2021-07-15T08:48:43,363 Created temporary directory: /tmp/pip-ephem-wheel-cache-bu03gcbs 2021-07-15T08:48:43,366 Created temporary directory: /tmp/pip-req-tracker-llu2a0c6 2021-07-15T08:48:43,367 Initialized build tracking at /tmp/pip-req-tracker-llu2a0c6 2021-07-15T08:48:43,367 Created build tracker: /tmp/pip-req-tracker-llu2a0c6 2021-07-15T08:48:43,367 Entered build tracker: /tmp/pip-req-tracker-llu2a0c6 2021-07-15T08:48:43,368 Created temporary directory: /tmp/pip-wheel-nvasu9xg 2021-07-15T08:48:43,397 1 location(s) to search for versions of amlearn: 2021-07-15T08:48:43,397 * https://pypi.org/simple/amlearn/ 2021-07-15T08:48:43,398 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T08:48:43,399 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T08:48:43,401 Found index url https://pypi.org/simple 2021-07-15T08:48:43,499 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T08:48:43,499 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T08:48:43,500 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T08:48:43,500 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T08:48:43,501 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T08:48:43,501 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T08:48:43,501 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T08:48:43,502 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T08:48:43,502 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T08:48:43,503 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T08:48:43,503 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T08:48:43,503 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T08:48:43,504 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T08:48:43,504 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T08:48:43,525 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T08:48:43,546 Collecting amlearn==0.3.1 2021-07-15T08:48:43,547 Created temporary directory: /tmp/pip-unpack-hc9hjh0w 2021-07-15T08:48:43,846 Downloading amlearn-0.3.1.tar.gz (84 kB) 2021-07-15T08:48:44,028 Added amlearn==0.3.1 from https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 to build tracker '/tmp/pip-req-tracker-llu2a0c6' 2021-07-15T08:48:44,029 Running setup.py (path:/tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/setup.py) egg_info for package amlearn 2021-07-15T08:48:44,029 Created temporary directory: /tmp/pip-pip-egg-info-8f_hr3lg 2021-07-15T08:48:44,030 Running command python setup.py egg_info 2021-07-15T08:48:45,787 running egg_info 2021-07-15T08:48:45,788 running build_src 2021-07-15T08:48:45,791 build_src 2021-07-15T08:48:45,791 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:48:45,792 f2py options: [] 2021-07-15T08:48:45,792 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:48:45,792 creating build 2021-07-15T08:48:45,792 creating build/src.linux-armv7l-3.9 2021-07-15T08:48:45,793 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:45,794 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:45,795 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:46,000 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,002 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,003 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:46,003 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:46,044 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,056 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,060 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,061 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,272 Reading fortran codes... 2021-07-15T08:48:46,272 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:46,272 Post-processing... 2021-07-15T08:48:46,273 Block: utils 2021-07-15T08:48:46,273 Block: determinant_func 2021-07-15T08:48:46,273 Block: determinant 2021-07-15T08:48:46,273 Block: distance 2021-07-15T08:48:46,273 Block: distance_info 2021-07-15T08:48:46,273 Block: quicksort 2021-07-15T08:48:46,273 Block: quick_sort 2021-07-15T08:48:46,274 Block: cg_function 2021-07-15T08:48:46,274 Block: calculate_cg 2021-07-15T08:48:46,274 Block: angle 2021-07-15T08:48:46,274 Block: angle_info 2021-07-15T08:48:46,274 Block: c_stats 2021-07-15T08:48:46,274 Block: customize_stats 2021-07-15T08:48:46,275 Block: a_stats 2021-07-15T08:48:46,275 Block: all_stats 2021-07-15T08:48:46,275 Post-processing (stage 2)... 2021-07-15T08:48:46,275 Block: utils 2021-07-15T08:48:46,275 Block: unknown_interface 2021-07-15T08:48:46,275 Block: determinant_func 2021-07-15T08:48:46,276 Block: determinant 2021-07-15T08:48:46,276 Block: distance 2021-07-15T08:48:46,276 Block: distance_info 2021-07-15T08:48:46,276 Block: quicksort 2021-07-15T08:48:46,276 Block: quick_sort 2021-07-15T08:48:46,277 Block: cg_function 2021-07-15T08:48:46,277 Block: calculate_cg 2021-07-15T08:48:46,277 Block: angle 2021-07-15T08:48:46,277 Block: angle_info 2021-07-15T08:48:46,277 Block: c_stats 2021-07-15T08:48:46,277 Block: customize_stats 2021-07-15T08:48:46,278 Block: a_stats 2021-07-15T08:48:46,278 Block: all_stats 2021-07-15T08:48:46,278 Building modules... 2021-07-15T08:48:46,278 Building module "utils"... 2021-07-15T08:48:46,278 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:46,278 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:46,279 deter_value = determinant(matrix) 2021-07-15T08:48:46,279 Constructing F90 module support for "distance"... 2021-07-15T08:48:46,279 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:46,279 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,279 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:46,279 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:46,279 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:46,280 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:46,280 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:46,280 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:46,280 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:46,280 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:46,280 Constructing F90 module support for "angle"... 2021-07-15T08:48:46,281 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:46,281 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,281 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:46,281 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:46,281 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:46,281 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:46,282 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:46,282 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:46,282 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:46,282 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:46,282 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T08:48:46,282 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T08:48:46,283 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:46,283 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:46,283 creating build/src.linux-armv7l-3.9/build 2021-07-15T08:48:46,283 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:46,283 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:46,283 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:46,284 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:46,284 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:46,284 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:46,284 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:48:46,284 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:48:46,285 f2py options: [] 2021-07-15T08:48:46,285 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T08:48:46,525 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,526 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,527 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:46,528 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:46,594 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,603 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,606 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:46,608 appenddecl: "dimension" not implemented. 2021-07-15T08:48:46,925 Reading fortran codes... 2021-07-15T08:48:46,925 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T08:48:46,926 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:48:46,926 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T08:48:46,926 analyzeline: Could not crack the use statement. 2021-07-15T08:48:46,926 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:46,926 Post-processing... 2021-07-15T08:48:46,926 Block: voronoi_nn 2021-07-15T08:48:46,927 Block: determinant 2021-07-15T08:48:46,927 Block: voronoi 2021-07-15T08:48:46,927 Block: determinant_func 2021-07-15T08:48:46,927 Block: determinant 2021-07-15T08:48:46,927 Block: distance 2021-07-15T08:48:46,927 Block: distance_info 2021-07-15T08:48:46,928 Block: quicksort 2021-07-15T08:48:46,928 Block: quick_sort 2021-07-15T08:48:46,928 Block: cg_function 2021-07-15T08:48:46,928 Block: calculate_cg 2021-07-15T08:48:46,928 Block: angle 2021-07-15T08:48:46,928 Block: angle_info 2021-07-15T08:48:46,928 Block: c_stats 2021-07-15T08:48:46,929 Block: customize_stats 2021-07-15T08:48:46,929 Block: a_stats 2021-07-15T08:48:46,929 Block: all_stats 2021-07-15T08:48:46,929 Post-processing (stage 2)... 2021-07-15T08:48:46,929 Block: voronoi_nn 2021-07-15T08:48:46,929 Block: unknown_interface 2021-07-15T08:48:46,930 Block: determinant 2021-07-15T08:48:46,930 Block: voronoi 2021-07-15T08:48:46,930 Block: determinant_func 2021-07-15T08:48:46,930 Block: determinant 2021-07-15T08:48:46,930 Block: distance 2021-07-15T08:48:46,930 Block: distance_info 2021-07-15T08:48:46,931 Block: quicksort 2021-07-15T08:48:46,931 Block: quick_sort 2021-07-15T08:48:46,931 Block: cg_function 2021-07-15T08:48:46,931 Block: calculate_cg 2021-07-15T08:48:46,931 Block: angle 2021-07-15T08:48:46,931 Block: angle_info 2021-07-15T08:48:46,932 Block: c_stats 2021-07-15T08:48:46,932 Block: customize_stats 2021-07-15T08:48:46,932 Block: a_stats 2021-07-15T08:48:46,932 Block: all_stats 2021-07-15T08:48:46,932 Building modules... 2021-07-15T08:48:46,932 Building module "voronoi_nn"... 2021-07-15T08:48:46,932 Constructing wrapper function "determinant"... 2021-07-15T08:48:46,933 deter_value = determinant(face) 2021-07-15T08:48:46,933 Constructing wrapper function "voronoi"... 2021-07-15T08:48:46,933 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:46,933 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:46,933 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:46,934 deter_value = determinant(matrix) 2021-07-15T08:48:46,934 Constructing F90 module support for "distance"... 2021-07-15T08:48:46,934 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:46,934 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,934 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:46,934 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:46,934 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:46,935 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:46,935 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:46,935 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:46,935 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:46,935 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:46,935 Constructing F90 module support for "angle"... 2021-07-15T08:48:46,935 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:46,936 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:46,936 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:46,936 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:46,936 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:46,936 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:46,937 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:46,937 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:46,937 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:46,937 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:46,937 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T08:48:46,937 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T08:48:46,938 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:46,938 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:46,938 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:46,938 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:48:46,938 f2py options: [] 2021-07-15T08:48:46,938 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T08:48:47,158 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,160 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,161 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:47,161 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:47,207 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T08:48:47,276 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,289 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,293 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:47,294 appenddecl: "dimension" not implemented. 2021-07-15T08:48:47,951 Reading fortran codes... 2021-07-15T08:48:47,951 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T08:48:47,951 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:48:47,952 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:48:47,952 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,952 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:48:47,952 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:48:47,952 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,952 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T08:48:47,953 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T08:48:47,953 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,953 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T08:48:47,953 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T08:48:47,953 analyzeline: Could not crack the use statement. 2021-07-15T08:48:47,953 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:47,954 Post-processing... 2021-07-15T08:48:47,954 Block: voronoi_stats 2021-07-15T08:48:47,954 Block: voronoi_index 2021-07-15T08:48:47,954 Block: i_fold_symmetry 2021-07-15T08:48:47,954 Block: line_percent 2021-07-15T08:48:47,954 {} 2021-07-15T08:48:47,954 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:48:47,955 vars2fortran: No typespec for argument "n_voro". 2021-07-15T08:48:47,955 {} 2021-07-15T08:48:47,955 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:48:47,955 vars2fortran: No typespec for argument "n_target". 2021-07-15T08:48:47,955 Block: character_motif 2021-07-15T08:48:47,955 Block: area_wt_i_fold_symmetry 2021-07-15T08:48:47,955 Block: vol_wt_i_fold_symmetry 2021-07-15T08:48:47,956 Block: voronoi_area_stats 2021-07-15T08:48:47,956 Block: voronoi_area_stats_separate 2021-07-15T08:48:47,956 Block: voronoi_vol_stats 2021-07-15T08:48:47,956 Block: voronoi_vol_stats_separate 2021-07-15T08:48:47,956 Block: voronoi_distance_stats 2021-07-15T08:48:47,956 Block: determinant_func 2021-07-15T08:48:47,957 Block: determinant 2021-07-15T08:48:47,957 Block: distance 2021-07-15T08:48:47,957 Block: distance_info 2021-07-15T08:48:47,957 Block: quicksort 2021-07-15T08:48:47,957 Block: quick_sort 2021-07-15T08:48:47,957 Block: cg_function 2021-07-15T08:48:47,957 Block: calculate_cg 2021-07-15T08:48:47,958 Block: angle 2021-07-15T08:48:47,958 Block: angle_info 2021-07-15T08:48:47,958 Block: c_stats 2021-07-15T08:48:47,958 Block: customize_stats 2021-07-15T08:48:47,958 Block: a_stats 2021-07-15T08:48:47,958 Block: all_stats 2021-07-15T08:48:47,959 Post-processing (stage 2)... 2021-07-15T08:48:47,959 Block: voronoi_stats 2021-07-15T08:48:47,959 Block: unknown_interface 2021-07-15T08:48:47,959 Block: voronoi_index 2021-07-15T08:48:47,959 Block: i_fold_symmetry 2021-07-15T08:48:47,959 Block: line_percent 2021-07-15T08:48:47,959 Block: character_motif 2021-07-15T08:48:47,960 Block: area_wt_i_fold_symmetry 2021-07-15T08:48:47,960 Block: vol_wt_i_fold_symmetry 2021-07-15T08:48:47,960 Block: voronoi_area_stats 2021-07-15T08:48:47,960 Block: voronoi_area_stats_separate 2021-07-15T08:48:47,960 Block: voronoi_vol_stats 2021-07-15T08:48:47,960 Block: voronoi_vol_stats_separate 2021-07-15T08:48:47,961 Block: voronoi_distance_stats 2021-07-15T08:48:47,961 Block: determinant_func 2021-07-15T08:48:47,961 Block: determinant 2021-07-15T08:48:47,961 Block: distance 2021-07-15T08:48:47,961 Block: distance_info 2021-07-15T08:48:47,961 Block: quicksort 2021-07-15T08:48:47,961 Block: quick_sort 2021-07-15T08:48:47,961 Block: cg_function 2021-07-15T08:48:47,962 Block: calculate_cg 2021-07-15T08:48:47,962 Block: angle 2021-07-15T08:48:47,962 Block: angle_info 2021-07-15T08:48:47,962 Block: c_stats 2021-07-15T08:48:47,962 Block: customize_stats 2021-07-15T08:48:47,962 Block: a_stats 2021-07-15T08:48:47,962 Block: all_stats 2021-07-15T08:48:47,963 Building modules... 2021-07-15T08:48:47,963 Building module "voronoi_stats"... 2021-07-15T08:48:47,963 Constructing wrapper function "voronoi_index"... 2021-07-15T08:48:47,963 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,963 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T08:48:47,963 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,964 Constructing wrapper function "line_percent"... 2021-07-15T08:48:47,964 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T08:48:47,964 Constructing wrapper function "character_motif"... 2021-07-15T08:48:47,964 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T08:48:47,964 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T08:48:47,964 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,964 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T08:48:47,965 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,965 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T08:48:47,965 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,965 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T08:48:47,965 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,965 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T08:48:47,966 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,966 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T08:48:47,966 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,966 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T08:48:47,966 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:48:47,966 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:47,966 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:47,967 deter_value = determinant(matrix) 2021-07-15T08:48:47,967 Constructing F90 module support for "distance"... 2021-07-15T08:48:47,967 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:47,967 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,967 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:47,967 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:47,968 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:47,968 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:47,968 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:47,968 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:47,968 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:47,968 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:47,968 Constructing F90 module support for "angle"... 2021-07-15T08:48:47,969 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:47,969 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:47,969 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:47,969 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:47,969 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:47,969 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:47,969 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:47,970 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:47,970 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:47,970 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:47,970 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T08:48:47,970 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T08:48:47,970 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:47,971 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:47,971 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:47,971 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:48:47,971 f2py options: [] 2021-07-15T08:48:47,971 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T08:48:48,382 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,384 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,385 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:48,385 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:48,437 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,444 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,447 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,448 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,729 Reading fortran codes... 2021-07-15T08:48:48,729 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T08:48:48,729 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T08:48:48,729 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T08:48:48,729 analyzeline: Could not crack the use statement. 2021-07-15T08:48:48,730 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:48,730 Post-processing... 2021-07-15T08:48:48,730 Block: boop 2021-07-15T08:48:48,730 Block: calculate_boop 2021-07-15T08:48:48,730 Block: determinant_func 2021-07-15T08:48:48,730 Block: determinant 2021-07-15T08:48:48,730 Block: distance 2021-07-15T08:48:48,731 Block: distance_info 2021-07-15T08:48:48,731 Block: quicksort 2021-07-15T08:48:48,731 Block: quick_sort 2021-07-15T08:48:48,731 Block: cg_function 2021-07-15T08:48:48,731 Block: calculate_cg 2021-07-15T08:48:48,731 Block: angle 2021-07-15T08:48:48,732 Block: angle_info 2021-07-15T08:48:48,732 Block: c_stats 2021-07-15T08:48:48,732 Block: customize_stats 2021-07-15T08:48:48,732 Block: a_stats 2021-07-15T08:48:48,732 Block: all_stats 2021-07-15T08:48:48,732 Post-processing (stage 2)... 2021-07-15T08:48:48,733 Block: boop 2021-07-15T08:48:48,733 Block: unknown_interface 2021-07-15T08:48:48,733 Block: calculate_boop 2021-07-15T08:48:48,733 Block: determinant_func 2021-07-15T08:48:48,733 Block: determinant 2021-07-15T08:48:48,733 Block: distance 2021-07-15T08:48:48,733 Block: distance_info 2021-07-15T08:48:48,734 Block: quicksort 2021-07-15T08:48:48,734 Block: quick_sort 2021-07-15T08:48:48,734 Block: cg_function 2021-07-15T08:48:48,734 Block: calculate_cg 2021-07-15T08:48:48,734 Block: angle 2021-07-15T08:48:48,734 Block: angle_info 2021-07-15T08:48:48,734 Block: c_stats 2021-07-15T08:48:48,735 Block: customize_stats 2021-07-15T08:48:48,735 Block: a_stats 2021-07-15T08:48:48,735 Block: all_stats 2021-07-15T08:48:48,735 Building modules... 2021-07-15T08:48:48,735 Building module "boop"... 2021-07-15T08:48:48,735 Constructing wrapper function "calculate_boop"... 2021-07-15T08:48:48,736 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:48,736 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:48,736 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:48,736 deter_value = determinant(matrix) 2021-07-15T08:48:48,736 Constructing F90 module support for "distance"... 2021-07-15T08:48:48,736 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:48,737 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,737 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:48,737 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:48,737 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:48,737 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:48,737 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:48,737 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:48,738 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:48,738 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:48,738 Constructing F90 module support for "angle"... 2021-07-15T08:48:48,738 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:48,738 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:48,738 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:48,738 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:48,739 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:48,739 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:48,739 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:48,739 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:48,739 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:48,739 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:48,739 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T08:48:48,740 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T08:48:48,740 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:48,740 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:48,740 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:48:48,740 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:48:48,741 f2py options: [] 2021-07-15T08:48:48,741 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T08:48:48,861 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,862 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,863 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:48,863 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:48,919 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,935 appenddecl: "dimension" not implemented. 2021-07-15T08:48:48,940 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:48,942 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,244 Reading fortran codes... 2021-07-15T08:48:49,244 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T08:48:49,244 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T08:48:49,245 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T08:48:49,245 analyzeline: Could not crack the use statement. 2021-07-15T08:48:49,245 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:49,245 Post-processing... 2021-07-15T08:48:49,245 Block: mro_stats 2021-07-15T08:48:49,245 {'attrspec': ['intent(in)']} 2021-07-15T08:48:49,245 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T08:48:49,246 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T08:48:49,246 Block: sro_to_mro 2021-07-15T08:48:49,246 Block: determinant_func 2021-07-15T08:48:49,246 Block: determinant 2021-07-15T08:48:49,246 Block: distance 2021-07-15T08:48:49,246 Block: distance_info 2021-07-15T08:48:49,247 Block: quicksort 2021-07-15T08:48:49,247 Block: quick_sort 2021-07-15T08:48:49,247 Block: cg_function 2021-07-15T08:48:49,247 Block: calculate_cg 2021-07-15T08:48:49,247 Block: angle 2021-07-15T08:48:49,247 Block: angle_info 2021-07-15T08:48:49,248 Block: c_stats 2021-07-15T08:48:49,248 Block: customize_stats 2021-07-15T08:48:49,248 Block: a_stats 2021-07-15T08:48:49,248 Block: all_stats 2021-07-15T08:48:49,248 Post-processing (stage 2)... 2021-07-15T08:48:49,248 Block: mro_stats 2021-07-15T08:48:49,248 Block: unknown_interface 2021-07-15T08:48:49,249 Block: sro_to_mro 2021-07-15T08:48:49,249 Block: determinant_func 2021-07-15T08:48:49,249 Block: determinant 2021-07-15T08:48:49,249 Block: distance 2021-07-15T08:48:49,249 Block: distance_info 2021-07-15T08:48:49,249 Block: quicksort 2021-07-15T08:48:49,249 Block: quick_sort 2021-07-15T08:48:49,250 Block: cg_function 2021-07-15T08:48:49,250 Block: calculate_cg 2021-07-15T08:48:49,250 Block: angle 2021-07-15T08:48:49,250 Block: angle_info 2021-07-15T08:48:49,250 Block: c_stats 2021-07-15T08:48:49,250 Block: customize_stats 2021-07-15T08:48:49,250 Block: a_stats 2021-07-15T08:48:49,251 Block: all_stats 2021-07-15T08:48:49,251 Building modules... 2021-07-15T08:48:49,251 Building module "mro_stats"... 2021-07-15T08:48:49,251 Constructing wrapper function "sro_to_mro"... 2021-07-15T08:48:49,251 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T08:48:49,251 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:49,251 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:49,252 deter_value = determinant(matrix) 2021-07-15T08:48:49,252 Constructing F90 module support for "distance"... 2021-07-15T08:48:49,252 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:49,252 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,252 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:49,252 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:49,253 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:49,253 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:49,253 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:49,253 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:49,253 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:49,253 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:49,253 Constructing F90 module support for "angle"... 2021-07-15T08:48:49,254 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:49,254 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,254 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:49,254 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:49,254 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:49,254 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:49,255 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:49,255 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:49,255 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:49,255 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:49,255 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T08:48:49,255 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T08:48:49,256 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:49,256 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:49,256 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:49,256 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:48:49,256 f2py options: [] 2021-07-15T08:48:49,256 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T08:48:49,388 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,389 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,390 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:49,391 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:49,430 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,439 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,442 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,443 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,741 Reading fortran codes... 2021-07-15T08:48:49,741 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T08:48:49,741 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:49,741 Post-processing... 2021-07-15T08:48:49,742 Block: neighbor_data 2021-07-15T08:48:49,742 Block: add_neighbor_features 2021-07-15T08:48:49,742 Block: determinant_func 2021-07-15T08:48:49,742 Block: determinant 2021-07-15T08:48:49,742 Block: distance 2021-07-15T08:48:49,742 Block: distance_info 2021-07-15T08:48:49,742 Block: quicksort 2021-07-15T08:48:49,743 Block: quick_sort 2021-07-15T08:48:49,743 Block: cg_function 2021-07-15T08:48:49,743 Block: calculate_cg 2021-07-15T08:48:49,743 Block: angle 2021-07-15T08:48:49,743 Block: angle_info 2021-07-15T08:48:49,743 Block: c_stats 2021-07-15T08:48:49,744 Block: customize_stats 2021-07-15T08:48:49,744 Block: a_stats 2021-07-15T08:48:49,744 Block: all_stats 2021-07-15T08:48:49,744 Post-processing (stage 2)... 2021-07-15T08:48:49,744 Block: neighbor_data 2021-07-15T08:48:49,744 Block: unknown_interface 2021-07-15T08:48:49,745 Block: add_neighbor_features 2021-07-15T08:48:49,745 Block: determinant_func 2021-07-15T08:48:49,745 Block: determinant 2021-07-15T08:48:49,745 Block: distance 2021-07-15T08:48:49,745 Block: distance_info 2021-07-15T08:48:49,746 Block: quicksort 2021-07-15T08:48:49,746 Block: quick_sort 2021-07-15T08:48:49,746 Block: cg_function 2021-07-15T08:48:49,746 Block: calculate_cg 2021-07-15T08:48:49,746 Block: angle 2021-07-15T08:48:49,746 Block: angle_info 2021-07-15T08:48:49,746 Block: c_stats 2021-07-15T08:48:49,747 Block: customize_stats 2021-07-15T08:48:49,747 Block: a_stats 2021-07-15T08:48:49,747 Block: all_stats 2021-07-15T08:48:49,747 Building modules... 2021-07-15T08:48:49,747 Building module "neighbor_data"... 2021-07-15T08:48:49,747 Constructing wrapper function "add_neighbor_features"... 2021-07-15T08:48:49,748 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T08:48:49,748 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:49,748 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:49,748 deter_value = determinant(matrix) 2021-07-15T08:48:49,748 Constructing F90 module support for "distance"... 2021-07-15T08:48:49,748 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:49,749 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,749 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:49,749 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:49,749 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:49,749 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:49,749 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:49,749 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:49,750 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:49,750 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:49,750 Constructing F90 module support for "angle"... 2021-07-15T08:48:49,750 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:49,750 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:49,750 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:49,751 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:49,751 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:49,751 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:49,751 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:49,751 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:49,751 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:49,752 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:49,752 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T08:48:49,752 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T08:48:49,752 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:49,752 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:49,752 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:48:49,753 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:48:49,753 f2py options: [] 2021-07-15T08:48:49,753 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T08:48:49,859 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,861 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,861 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:49,862 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:49,895 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,902 appenddecl: "dimension" not implemented. 2021-07-15T08:48:49,905 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:49,906 appenddecl: "dimension" not implemented. 2021-07-15T08:48:50,164 Reading fortran codes... 2021-07-15T08:48:50,164 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T08:48:50,165 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T08:48:50,165 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T08:48:50,165 analyzeline: Could not crack the use statement. 2021-07-15T08:48:50,165 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:50,165 Post-processing... 2021-07-15T08:48:50,166 Block: distance_stats 2021-07-15T08:48:50,166 Block: cn_dist 2021-07-15T08:48:50,166 Block: cutoff_distance_stats 2021-07-15T08:48:50,166 Block: determinant_func 2021-07-15T08:48:50,166 Block: determinant 2021-07-15T08:48:50,166 Block: distance 2021-07-15T08:48:50,166 Block: distance_info 2021-07-15T08:48:50,167 Block: quicksort 2021-07-15T08:48:50,167 Block: quick_sort 2021-07-15T08:48:50,167 Block: cg_function 2021-07-15T08:48:50,167 Block: calculate_cg 2021-07-15T08:48:50,167 Block: angle 2021-07-15T08:48:50,167 Block: angle_info 2021-07-15T08:48:50,168 Block: c_stats 2021-07-15T08:48:50,168 Block: customize_stats 2021-07-15T08:48:50,168 Block: a_stats 2021-07-15T08:48:50,168 Block: all_stats 2021-07-15T08:48:50,168 Post-processing (stage 2)... 2021-07-15T08:48:50,168 Block: distance_stats 2021-07-15T08:48:50,168 Block: unknown_interface 2021-07-15T08:48:50,169 Block: cn_dist 2021-07-15T08:48:50,169 Block: cutoff_distance_stats 2021-07-15T08:48:50,169 Block: determinant_func 2021-07-15T08:48:50,169 Block: determinant 2021-07-15T08:48:50,169 Block: distance 2021-07-15T08:48:50,169 Block: distance_info 2021-07-15T08:48:50,169 Block: quicksort 2021-07-15T08:48:50,170 Block: quick_sort 2021-07-15T08:48:50,170 Block: cg_function 2021-07-15T08:48:50,170 Block: calculate_cg 2021-07-15T08:48:50,170 Block: angle 2021-07-15T08:48:50,170 Block: angle_info 2021-07-15T08:48:50,170 Block: c_stats 2021-07-15T08:48:50,171 Block: customize_stats 2021-07-15T08:48:50,171 Block: a_stats 2021-07-15T08:48:50,171 Block: all_stats 2021-07-15T08:48:50,171 Building modules... 2021-07-15T08:48:50,171 Building module "distance_stats"... 2021-07-15T08:48:50,171 Constructing wrapper function "cn_dist"... 2021-07-15T08:48:50,172 cn = cn_dist(n_neighbor_list) 2021-07-15T08:48:50,172 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T08:48:50,172 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:50,172 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:50,172 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:50,172 deter_value = determinant(matrix) 2021-07-15T08:48:50,172 Constructing F90 module support for "distance"... 2021-07-15T08:48:50,173 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:50,173 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:50,173 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:50,173 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:50,173 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:50,173 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:50,174 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:50,174 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:50,174 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:50,174 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:50,174 Constructing F90 module support for "angle"... 2021-07-15T08:48:50,174 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:50,174 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:50,175 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:50,175 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:50,175 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:50,175 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:50,175 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:50,176 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:50,176 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:50,176 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:50,176 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T08:48:50,176 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T08:48:50,176 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:50,177 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:50,177 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:50,177 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:48:50,177 f2py options: [] 2021-07-15T08:48:50,177 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T08:48:50,287 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:50,288 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:50,289 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:48:50,289 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:48:50,327 appenddecl: "dimension" not implemented. 2021-07-15T08:48:50,334 appenddecl: "dimension" not implemented. 2021-07-15T08:48:50,337 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:48:50,338 appenddecl: "dimension" not implemented. 2021-07-15T08:48:50,606 Reading fortran codes... 2021-07-15T08:48:50,606 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T08:48:50,606 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:48:50,606 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T08:48:50,607 analyzeline: Could not crack the use statement. 2021-07-15T08:48:50,607 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T08:48:50,607 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T08:48:50,607 analyzeline: Could not crack the use statement. 2021-07-15T08:48:50,607 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:48:50,608 Post-processing... 2021-07-15T08:48:50,608 Block: distance_nn 2021-07-15T08:48:50,608 Block: distance_neighbor 2021-07-15T08:48:50,608 Block: determinant_func 2021-07-15T08:48:50,608 Block: determinant 2021-07-15T08:48:50,608 Block: distance 2021-07-15T08:48:50,608 Block: distance_info 2021-07-15T08:48:50,609 Block: quicksort 2021-07-15T08:48:50,609 Block: quick_sort 2021-07-15T08:48:50,609 Block: cg_function 2021-07-15T08:48:50,609 Block: calculate_cg 2021-07-15T08:48:50,609 Block: angle 2021-07-15T08:48:50,609 Block: angle_info 2021-07-15T08:48:50,609 Block: c_stats 2021-07-15T08:48:50,610 Block: customize_stats 2021-07-15T08:48:50,610 Block: a_stats 2021-07-15T08:48:50,610 Block: all_stats 2021-07-15T08:48:50,610 Post-processing (stage 2)... 2021-07-15T08:48:50,610 Block: distance_nn 2021-07-15T08:48:50,610 Block: unknown_interface 2021-07-15T08:48:50,611 Block: distance_neighbor 2021-07-15T08:48:50,611 Block: determinant_func 2021-07-15T08:48:50,611 Block: determinant 2021-07-15T08:48:50,611 Block: distance 2021-07-15T08:48:50,611 Block: distance_info 2021-07-15T08:48:50,611 Block: quicksort 2021-07-15T08:48:50,611 Block: quick_sort 2021-07-15T08:48:50,612 Block: cg_function 2021-07-15T08:48:50,612 Block: calculate_cg 2021-07-15T08:48:50,612 Block: angle 2021-07-15T08:48:50,612 Block: angle_info 2021-07-15T08:48:50,612 Block: c_stats 2021-07-15T08:48:50,612 Block: customize_stats 2021-07-15T08:48:50,612 Block: a_stats 2021-07-15T08:48:50,613 Block: all_stats 2021-07-15T08:48:50,613 Building modules... 2021-07-15T08:48:50,613 Building module "distance_nn"... 2021-07-15T08:48:50,613 Constructing wrapper function "distance_neighbor"... 2021-07-15T08:48:50,613 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:48:50,613 Constructing F90 module support for "determinant_func"... 2021-07-15T08:48:50,614 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:48:50,614 deter_value = determinant(matrix) 2021-07-15T08:48:50,614 Constructing F90 module support for "distance"... 2021-07-15T08:48:50,614 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:48:50,614 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:50,614 Constructing F90 module support for "quicksort"... 2021-07-15T08:48:50,614 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:48:50,615 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:48:50,615 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:48:50,615 Constructing F90 module support for "cg_function"... 2021-07-15T08:48:50,615 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:48:50,615 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:48:50,616 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:48:50,616 Constructing F90 module support for "angle"... 2021-07-15T08:48:50,616 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:48:50,616 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:48:50,616 Constructing F90 module support for "c_stats"... 2021-07-15T08:48:50,616 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:48:50,617 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:48:50,617 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:48:50,617 Constructing F90 module support for "a_stats"... 2021-07-15T08:48:50,617 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:48:50,617 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:48:50,618 stats = all_stats(list,[len_bn]) 2021-07-15T08:48:50,618 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T08:48:50,618 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T08:48:50,618 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:50,618 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:50,619 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:50,619 build_src: building npy-pkg config files 2021-07-15T08:48:50,619 creating /tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info 2021-07-15T08:48:50,619 writing /tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/PKG-INFO 2021-07-15T08:48:50,619 writing dependency_links to /tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/dependency_links.txt 2021-07-15T08:48:50,619 writing requirements to /tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/requires.txt 2021-07-15T08:48:50,620 writing top-level names to /tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/top_level.txt 2021-07-15T08:48:50,620 writing manifest file '/tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:50,711 reading manifest file '/tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:50,718 writing manifest file '/tmp/pip-pip-egg-info-8f_hr3lg/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:48:50,877 Source in /tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01 has version 0.3.1, which satisfies requirement amlearn==0.3.1 from https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 2021-07-15T08:48:50,878 Removed amlearn==0.3.1 from https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 from build tracker '/tmp/pip-req-tracker-llu2a0c6' 2021-07-15T08:48:50,882 Created temporary directory: /tmp/pip-unpack-theuh6uq 2021-07-15T08:48:50,883 Building wheels for collected packages: amlearn 2021-07-15T08:48:50,887 Created temporary directory: /tmp/pip-wheel-05vzed11 2021-07-15T08:48:50,888 Building wheel for amlearn (setup.py): started 2021-07-15T08:48:50,888 Destination directory: /tmp/pip-wheel-05vzed11 2021-07-15T08:48:50,889 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-05vzed11 2021-07-15T08:48:52,656 running bdist_wheel 2021-07-15T08:48:52,658 running build 2021-07-15T08:48:52,658 running config_cc 2021-07-15T08:48:52,658 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T08:48:52,659 running config_fc 2021-07-15T08:48:52,659 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T08:48:52,660 running build_src 2021-07-15T08:48:52,660 build_src 2021-07-15T08:48:52,660 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:48:52,660 f2py options: [] 2021-07-15T08:48:52,661 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,661 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,759 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,759 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:48:52,759 f2py options: [] 2021-07-15T08:48:52,760 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,760 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,760 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,760 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:48:52,760 f2py options: [] 2021-07-15T08:48:52,761 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,761 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,761 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,761 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:48:52,761 f2py options: [] 2021-07-15T08:48:52,761 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,762 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,762 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,762 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:48:52,762 f2py options: [] 2021-07-15T08:48:52,762 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,762 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,763 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,763 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:48:52,763 f2py options: [] 2021-07-15T08:48:52,763 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,763 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,763 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,764 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:48:52,764 f2py options: [] 2021-07-15T08:48:52,764 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,764 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,764 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,764 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:48:52,765 f2py options: [] 2021-07-15T08:48:52,765 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:48:52,765 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:48:52,765 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:48:52,765 build_src: building npy-pkg config files 2021-07-15T08:48:52,766 running build_py 2021-07-15T08:48:52,769 creating build/lib.linux-armv7l-3.9 2021-07-15T08:48:52,770 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:52,771 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:52,773 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:48:52,775 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,776 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,778 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,779 copying scripts/classification.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,781 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,783 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,785 copying scripts/regression.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,787 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,789 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,791 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,793 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:48:52,796 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,797 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,799 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,800 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,803 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,805 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,808 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,810 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:52,815 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,816 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,818 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,820 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,823 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,826 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:48:52,828 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,829 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,832 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,834 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,835 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,837 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,839 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,841 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,843 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,846 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,848 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:52,849 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:52,851 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,852 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,855 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,856 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,859 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,862 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,864 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:48:52,866 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:52,867 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:52,869 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:52,872 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:48:52,877 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:52,878 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:52,880 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:48:52,883 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:52,884 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:52,886 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:52,888 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:48:52,890 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,893 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,895 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:48:52,905 running build_ext 2021-07-15T08:48:52,911 customize UnixCCompiler 2021-07-15T08:48:52,913 customize UnixCCompiler using build_ext 2021-07-15T08:48:53,039 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T08:48:53,040 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,040 creating /tmp/tmpamclzjg4/home 2021-07-15T08:48:53,041 creating /tmp/tmpamclzjg4/home/piwheels 2021-07-15T08:48:53,042 creating /tmp/tmpamclzjg4/home/piwheels/.local 2021-07-15T08:48:53,042 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib 2021-07-15T08:48:53,043 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9 2021-07-15T08:48:53,043 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T08:48:53,044 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T08:48:53,045 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T08:48:53,045 creating /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T08:48:53,046 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,046 extra options: '-march=native' 2021-07-15T08:48:53,145 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T08:48:53,145 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,146 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,146 extra options: '-O3' 2021-07-15T08:48:53,243 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T08:48:53,243 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,244 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,244 extra options: '-Werror' 2021-07-15T08:48:53,340 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T08:48:53,347 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T08:48:53,355 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T08:48:53,355 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,356 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,356 extra options: '-mfpu=neon' 2021-07-15T08:48:53,461 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T08:48:53,462 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,462 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,462 extra options: '-mfpu=neon -Werror' 2021-07-15T08:48:53,883 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:48:53,883 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,884 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,884 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T08:48:53,990 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:48:53,990 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:53,991 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:53,991 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T08:48:54,469 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T08:48:54,470 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:54,470 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:54,470 extra options: '-mfpu=neon-vfpv4' 2021-07-15T08:48:54,581 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T08:48:54,582 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:54,582 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:54,582 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T08:48:55,205 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:48:55,206 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:55,206 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:55,206 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T08:48:55,312 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:48:55,312 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:55,313 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:55,313 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T08:48:56,002 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T08:48:56,003 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:56,003 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:56,003 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T08:48:56,108 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T08:48:56,108 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:56,109 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:56,109 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T08:48:56,586 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T08:48:56,586 /tmp/ccKTI7Ah.s: Assembler messages: 2021-07-15T08:48:56,587 /tmp/ccKTI7Ah.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T08:48:56,593 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:48:56,605 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T08:48:56,605 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:56,606 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:56,606 extra options: '-march=armv8.2-a+fp16' 2021-07-15T08:48:56,703 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T08:48:56,703 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:56,704 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:56,704 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T08:48:57,308 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T08:48:57,309 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:57,309 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:57,309 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T08:48:57,403 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T08:48:57,403 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:57,404 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:48:57,404 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T08:48:57,868 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpamclzjg4/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T08:48:57,869 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T08:48:57,869 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:48:57,869 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:48:57,869 | ^~~~~~~~~~~~~~ 2021-07-15T08:48:57,869 | vfmlal_low_f16 2021-07-15T08:48:57,869 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T08:48:57,869 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:48:57,870 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:48:57,870 | | 2021-07-15T08:48:57,870 | int 2021-07-15T08:48:57,870 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:48:57,870 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T08:48:57,870 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T08:48:57,870 | ~~~~~~~~~~~~^~~ 2021-07-15T08:48:57,870 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:48:57,871 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:48:57,871 | ^~~~~~~~~~~~~~~~ 2021-07-15T08:48:57,871 | vfmlslq_high_f16 2021-07-15T08:48:57,871 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T08:48:57,871 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:48:57,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:48:57,871 | | 2021-07-15T08:48:57,871 | int 2021-07-15T08:48:57,872 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:48:57,872 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T08:48:57,872 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T08:48:57,872 | ~~~~~~~~~~~~^~~ 2021-07-15T08:48:57,872 cc1: all warnings being treated as errors 2021-07-15T08:48:57,876 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:48:57,882 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T08:48:57,889 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T08:48:57,896 CCompilerOpt._parse_target_tokens[1934] : skip targets (AVX512_SKX AVX512F SSE42 SSE2 FMA4 VSX3 XOP (AVX2 FMA3) VSX VSX2) not part of baseline or dispatch-able features 2021-07-15T08:48:57,902 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T08:48:57,908 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T08:48:57,993 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T08:48:57,993 customize Gnu95FCompiler 2021-07-15T08:48:57,995 Found executable /usr/bin/gfortran 2021-07-15T08:48:58,051 customize Gnu95FCompiler 2021-07-15T08:48:58,107 customize Gnu95FCompiler using build_ext 2021-07-15T08:48:58,108 building 'amlearn.featurize.src.utils' extension 2021-07-15T08:48:58,110 compiling C sources 2021-07-15T08:48:58,111 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:48:58,112 creating build/temp.linux-armv7l-3.9/build 2021-07-15T08:48:58,112 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:58,113 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:58,114 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:58,115 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:58,116 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T08:48:58,117 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:48:58,118 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:48:58,119 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:48:58,120 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:48:58,120 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:48:58,143 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T08:48:58,155 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:48:58,567 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:48:58,567 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:48:58,568 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:48:58,568 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:48:58,568 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T08:48:58,568 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:48:58,568 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:48:58,569 | ^~~~~~~ 2021-07-15T08:48:58,645 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T08:48:58,645 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T08:48:58,645 | ^~~~~~~~~ 2021-07-15T08:48:58,660 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:48:58,661 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:48:58,661 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:48:58,661 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:48:58,661 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T08:48:58,662 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:48:58,662 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:48:58,662 | ^~~~~~~ 2021-07-15T08:49:00,316 compiling Fortran 90 module sources 2021-07-15T08:49:00,317 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T08:49:00,318 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:49:00,318 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:49:00,319 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:49:00,320 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:49:00,320 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:49:00,320 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:49:00,321 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T08:49:00,321 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T08:49:00,401 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T08:49:00,402 259 | REAL(16) :: std 2021-07-15T08:49:00,402 | 1 2021-07-15T08:49:00,402 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T08:49:00,403 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T08:49:00,403 285 | std = std + (list(atom) - mean)**2 2021-07-15T08:49:00,404 | 1 2021-07-15T08:49:00,404 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T08:49:00,410 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T08:49:00,411 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T08:49:00,411 Platform : 2021-07-15T08:49:00,412 Architecture: armhf 2021-07-15T08:49:00,412 Compiler : gcc 2021-07-15T08:49:00,412 CPU baseline : 2021-07-15T08:49:00,413 Requested : 'min' 2021-07-15T08:49:00,413 Enabled : none 2021-07-15T08:49:00,413 Flags : none 2021-07-15T08:49:00,413 Extra checks: none 2021-07-15T08:49:00,414 CPU dispatch : 2021-07-15T08:49:00,414 Requested : 'max -xop -fma4' 2021-07-15T08:49:00,414 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T08:49:00,414 Generated : none 2021-07-15T08:49:00,414 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T08:49:00,600 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T08:49:00,600 ERROR: Failed building wheel for amlearn 2021-07-15T08:49:00,601 Running setup.py clean for amlearn 2021-07-15T08:49:00,602 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nvasu9xg/amlearn_fdf57f8f46a545c8a48678125ab3ce01/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T08:49:02,468 running clean 2021-07-15T08:49:02,470 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:49:02,488 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:49:02,515 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T08:49:02,515 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T08:49:02,662 Failed to build amlearn 2021-07-15T08:49:02,663 ERROR: Failed to build one or more wheels 2021-07-15T08:49:02,664 Exception information: 2021-07-15T08:49:02,664 Traceback (most recent call last): 2021-07-15T08:49:02,664 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T08:49:02,664 status = self.run(options, args) 2021-07-15T08:49:02,664 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T08:49:02,664 return func(self, options, args) 2021-07-15T08:49:02,664 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T08:49:02,664 raise CommandError( 2021-07-15T08:49:02,664 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T08:49:02,667 Removed build tracker: '/tmp/pip-req-tracker-llu2a0c6'