2021-07-15T08:53:14,543 Created temporary directory: /tmp/pip-ephem-wheel-cache-7a2480_t 2021-07-15T08:53:14,545 Created temporary directory: /tmp/pip-req-tracker-0ysw3gme 2021-07-15T08:53:14,546 Initialized build tracking at /tmp/pip-req-tracker-0ysw3gme 2021-07-15T08:53:14,546 Created build tracker: /tmp/pip-req-tracker-0ysw3gme 2021-07-15T08:53:14,546 Entered build tracker: /tmp/pip-req-tracker-0ysw3gme 2021-07-15T08:53:14,546 Created temporary directory: /tmp/pip-wheel-qh4o4dvy 2021-07-15T08:53:14,573 1 location(s) to search for versions of amlearn: 2021-07-15T08:53:14,573 * https://pypi.org/simple/amlearn/ 2021-07-15T08:53:14,573 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T08:53:14,574 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T08:53:14,576 Found index url https://pypi.org/simple 2021-07-15T08:53:14,676 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T08:53:14,677 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T08:53:14,677 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T08:53:14,677 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T08:53:14,678 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T08:53:14,678 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T08:53:14,678 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T08:53:14,678 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T08:53:14,679 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T08:53:14,679 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T08:53:14,679 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T08:53:14,680 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T08:53:14,680 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T08:53:14,680 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T08:53:14,699 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T08:53:14,718 Collecting amlearn==0.3.2 2021-07-15T08:53:14,720 Created temporary directory: /tmp/pip-unpack-ujs48h5i 2021-07-15T08:53:14,950 Downloading amlearn-0.3.2.tar.gz (84 kB) 2021-07-15T08:53:15,110 Added amlearn==0.3.2 from https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e to build tracker '/tmp/pip-req-tracker-0ysw3gme' 2021-07-15T08:53:15,111 Running setup.py (path:/tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/setup.py) egg_info for package amlearn 2021-07-15T08:53:15,112 Created temporary directory: /tmp/pip-pip-egg-info-l37chzgv 2021-07-15T08:53:15,112 Running command python setup.py egg_info 2021-07-15T08:53:16,771 running egg_info 2021-07-15T08:53:16,773 running build_src 2021-07-15T08:53:16,776 build_src 2021-07-15T08:53:16,776 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:53:16,776 f2py options: [] 2021-07-15T08:53:16,777 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:53:16,778 creating build 2021-07-15T08:53:16,778 creating build/src.linux-armv7l-3.9 2021-07-15T08:53:16,779 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:53:16,780 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:16,781 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:16,974 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:16,975 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:16,976 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:16,977 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:17,016 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,028 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,032 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:17,034 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,244 Reading fortran codes... 2021-07-15T08:53:17,244 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:17,244 Post-processing... 2021-07-15T08:53:17,245 Block: utils 2021-07-15T08:53:17,245 Block: determinant_func 2021-07-15T08:53:17,245 Block: determinant 2021-07-15T08:53:17,245 Block: distance 2021-07-15T08:53:17,245 Block: distance_info 2021-07-15T08:53:17,245 Block: quicksort 2021-07-15T08:53:17,245 Block: quick_sort 2021-07-15T08:53:17,245 Block: cg_function 2021-07-15T08:53:17,245 Block: calculate_cg 2021-07-15T08:53:17,246 Block: angle 2021-07-15T08:53:17,246 Block: angle_info 2021-07-15T08:53:17,246 Block: c_stats 2021-07-15T08:53:17,246 Block: customize_stats 2021-07-15T08:53:17,246 Block: a_stats 2021-07-15T08:53:17,246 Block: all_stats 2021-07-15T08:53:17,246 Post-processing (stage 2)... 2021-07-15T08:53:17,246 Block: utils 2021-07-15T08:53:17,246 Block: unknown_interface 2021-07-15T08:53:17,247 Block: determinant_func 2021-07-15T08:53:17,247 Block: determinant 2021-07-15T08:53:17,247 Block: distance 2021-07-15T08:53:17,247 Block: distance_info 2021-07-15T08:53:17,247 Block: quicksort 2021-07-15T08:53:17,247 Block: quick_sort 2021-07-15T08:53:17,247 Block: cg_function 2021-07-15T08:53:17,247 Block: calculate_cg 2021-07-15T08:53:17,247 Block: angle 2021-07-15T08:53:17,248 Block: angle_info 2021-07-15T08:53:17,248 Block: c_stats 2021-07-15T08:53:17,248 Block: customize_stats 2021-07-15T08:53:17,248 Block: a_stats 2021-07-15T08:53:17,248 Block: all_stats 2021-07-15T08:53:17,248 Building modules... 2021-07-15T08:53:17,248 Building module "utils"... 2021-07-15T08:53:17,248 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:17,248 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:17,248 deter_value = determinant(matrix) 2021-07-15T08:53:17,249 Constructing F90 module support for "distance"... 2021-07-15T08:53:17,249 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:17,249 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:17,249 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:17,249 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:17,249 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:17,250 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:17,250 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:17,250 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:17,250 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:17,250 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:17,251 Constructing F90 module support for "angle"... 2021-07-15T08:53:17,251 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:17,251 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:17,251 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:17,251 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:17,252 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:17,252 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:17,252 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:17,252 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:17,253 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:17,253 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:17,253 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T08:53:17,253 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T08:53:17,253 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:17,254 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:17,254 creating build/src.linux-armv7l-3.9/build 2021-07-15T08:53:17,254 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:53:17,254 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:53:17,255 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:17,255 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:17,255 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:17,256 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:17,258 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:53:17,258 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:53:17,259 f2py options: [] 2021-07-15T08:53:17,259 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T08:53:17,453 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:17,455 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:17,455 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:17,455 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:17,506 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,512 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,515 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:17,516 appenddecl: "dimension" not implemented. 2021-07-15T08:53:17,810 Reading fortran codes... 2021-07-15T08:53:17,810 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T08:53:17,810 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:53:17,811 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T08:53:17,811 analyzeline: Could not crack the use statement. 2021-07-15T08:53:17,811 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:17,811 Post-processing... 2021-07-15T08:53:17,811 Block: voronoi_nn 2021-07-15T08:53:17,812 Block: determinant 2021-07-15T08:53:17,812 Block: voronoi 2021-07-15T08:53:17,812 Block: determinant_func 2021-07-15T08:53:17,812 Block: determinant 2021-07-15T08:53:17,812 Block: distance 2021-07-15T08:53:17,812 Block: distance_info 2021-07-15T08:53:17,813 Block: quicksort 2021-07-15T08:53:17,813 Block: quick_sort 2021-07-15T08:53:17,813 Block: cg_function 2021-07-15T08:53:17,813 Block: calculate_cg 2021-07-15T08:53:17,813 Block: angle 2021-07-15T08:53:17,813 Block: angle_info 2021-07-15T08:53:17,813 Block: c_stats 2021-07-15T08:53:17,813 Block: customize_stats 2021-07-15T08:53:17,813 Block: a_stats 2021-07-15T08:53:17,814 Block: all_stats 2021-07-15T08:53:17,814 Post-processing (stage 2)... 2021-07-15T08:53:17,814 Block: voronoi_nn 2021-07-15T08:53:17,814 Block: unknown_interface 2021-07-15T08:53:17,814 Block: determinant 2021-07-15T08:53:17,814 Block: voronoi 2021-07-15T08:53:17,814 Block: determinant_func 2021-07-15T08:53:17,814 Block: determinant 2021-07-15T08:53:17,815 Block: distance 2021-07-15T08:53:17,815 Block: distance_info 2021-07-15T08:53:17,815 Block: quicksort 2021-07-15T08:53:17,815 Block: quick_sort 2021-07-15T08:53:17,815 Block: cg_function 2021-07-15T08:53:17,815 Block: calculate_cg 2021-07-15T08:53:17,815 Block: angle 2021-07-15T08:53:17,816 Block: angle_info 2021-07-15T08:53:17,816 Block: c_stats 2021-07-15T08:53:17,816 Block: customize_stats 2021-07-15T08:53:17,816 Block: a_stats 2021-07-15T08:53:17,816 Block: all_stats 2021-07-15T08:53:17,816 Building modules... 2021-07-15T08:53:17,816 Building module "voronoi_nn"... 2021-07-15T08:53:17,816 Constructing wrapper function "determinant"... 2021-07-15T08:53:17,817 deter_value = determinant(face) 2021-07-15T08:53:17,817 Constructing wrapper function "voronoi"... 2021-07-15T08:53:17,817 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:53:17,817 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:17,817 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:17,817 deter_value = determinant(matrix) 2021-07-15T08:53:17,817 Constructing F90 module support for "distance"... 2021-07-15T08:53:17,817 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:17,818 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:17,818 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:17,818 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:17,818 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:17,818 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:17,818 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:17,818 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:17,818 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:17,818 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:17,818 Constructing F90 module support for "angle"... 2021-07-15T08:53:17,819 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:17,819 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:17,819 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:17,819 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:17,819 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:17,819 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:17,819 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:17,819 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:17,820 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:17,820 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:17,820 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T08:53:17,820 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T08:53:17,820 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:17,820 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:17,820 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:53:17,820 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:53:17,820 f2py options: [] 2021-07-15T08:53:17,821 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T08:53:18,029 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:18,030 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:18,031 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:18,031 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:18,073 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T08:53:18,133 appenddecl: "dimension" not implemented. 2021-07-15T08:53:18,145 appenddecl: "dimension" not implemented. 2021-07-15T08:53:18,148 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:18,149 appenddecl: "dimension" not implemented. 2021-07-15T08:53:18,768 Reading fortran codes... 2021-07-15T08:53:18,768 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T08:53:18,768 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:53:18,768 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:53:18,769 analyzeline: Could not crack the use statement. 2021-07-15T08:53:18,769 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:53:18,769 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:53:18,769 analyzeline: Could not crack the use statement. 2021-07-15T08:53:18,770 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T08:53:18,770 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T08:53:18,770 analyzeline: Could not crack the use statement. 2021-07-15T08:53:18,770 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T08:53:18,770 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T08:53:18,770 analyzeline: Could not crack the use statement. 2021-07-15T08:53:18,770 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:18,771 Post-processing... 2021-07-15T08:53:18,771 Block: voronoi_stats 2021-07-15T08:53:18,771 Block: voronoi_index 2021-07-15T08:53:18,771 Block: i_fold_symmetry 2021-07-15T08:53:18,771 Block: line_percent 2021-07-15T08:53:18,771 {} 2021-07-15T08:53:18,771 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:53:18,771 vars2fortran: No typespec for argument "n_voro". 2021-07-15T08:53:18,772 {} 2021-07-15T08:53:18,772 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:53:18,772 vars2fortran: No typespec for argument "n_target". 2021-07-15T08:53:18,772 Block: character_motif 2021-07-15T08:53:18,772 Block: area_wt_i_fold_symmetry 2021-07-15T08:53:18,772 Block: vol_wt_i_fold_symmetry 2021-07-15T08:53:18,772 Block: voronoi_area_stats 2021-07-15T08:53:18,772 Block: voronoi_area_stats_separate 2021-07-15T08:53:18,772 Block: voronoi_vol_stats 2021-07-15T08:53:18,773 Block: voronoi_vol_stats_separate 2021-07-15T08:53:18,773 Block: voronoi_distance_stats 2021-07-15T08:53:18,773 Block: determinant_func 2021-07-15T08:53:18,773 Block: determinant 2021-07-15T08:53:18,773 Block: distance 2021-07-15T08:53:18,773 Block: distance_info 2021-07-15T08:53:18,773 Block: quicksort 2021-07-15T08:53:18,774 Block: quick_sort 2021-07-15T08:53:18,774 Block: cg_function 2021-07-15T08:53:18,774 Block: calculate_cg 2021-07-15T08:53:18,774 Block: angle 2021-07-15T08:53:18,774 Block: angle_info 2021-07-15T08:53:18,774 Block: c_stats 2021-07-15T08:53:18,774 Block: customize_stats 2021-07-15T08:53:18,774 Block: a_stats 2021-07-15T08:53:18,775 Block: all_stats 2021-07-15T08:53:18,775 Post-processing (stage 2)... 2021-07-15T08:53:18,775 Block: voronoi_stats 2021-07-15T08:53:18,775 Block: unknown_interface 2021-07-15T08:53:18,775 Block: voronoi_index 2021-07-15T08:53:18,775 Block: i_fold_symmetry 2021-07-15T08:53:18,775 Block: line_percent 2021-07-15T08:53:18,775 Block: character_motif 2021-07-15T08:53:18,775 Block: area_wt_i_fold_symmetry 2021-07-15T08:53:18,776 Block: vol_wt_i_fold_symmetry 2021-07-15T08:53:18,776 Block: voronoi_area_stats 2021-07-15T08:53:18,776 Block: voronoi_area_stats_separate 2021-07-15T08:53:18,776 Block: voronoi_vol_stats 2021-07-15T08:53:18,776 Block: voronoi_vol_stats_separate 2021-07-15T08:53:18,776 Block: voronoi_distance_stats 2021-07-15T08:53:18,776 Block: determinant_func 2021-07-15T08:53:18,776 Block: determinant 2021-07-15T08:53:18,776 Block: distance 2021-07-15T08:53:18,777 Block: distance_info 2021-07-15T08:53:18,777 Block: quicksort 2021-07-15T08:53:18,777 Block: quick_sort 2021-07-15T08:53:18,777 Block: cg_function 2021-07-15T08:53:18,777 Block: calculate_cg 2021-07-15T08:53:18,777 Block: angle 2021-07-15T08:53:18,777 Block: angle_info 2021-07-15T08:53:18,777 Block: c_stats 2021-07-15T08:53:18,777 Block: customize_stats 2021-07-15T08:53:18,778 Block: a_stats 2021-07-15T08:53:18,778 Block: all_stats 2021-07-15T08:53:18,778 Building modules... 2021-07-15T08:53:18,778 Building module "voronoi_stats"... 2021-07-15T08:53:18,778 Constructing wrapper function "voronoi_index"... 2021-07-15T08:53:18,778 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,778 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T08:53:18,778 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,778 Constructing wrapper function "line_percent"... 2021-07-15T08:53:18,779 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T08:53:18,779 Constructing wrapper function "character_motif"... 2021-07-15T08:53:18,779 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T08:53:18,779 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T08:53:18,779 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,779 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T08:53:18,779 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,779 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T08:53:18,779 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,780 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T08:53:18,780 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,780 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T08:53:18,780 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,780 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T08:53:18,780 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,780 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T08:53:18,780 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:53:18,780 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:18,781 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:18,781 deter_value = determinant(matrix) 2021-07-15T08:53:18,781 Constructing F90 module support for "distance"... 2021-07-15T08:53:18,781 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:18,781 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:18,781 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:18,781 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:18,781 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:18,782 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:18,782 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:18,782 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:18,782 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:18,782 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:18,782 Constructing F90 module support for "angle"... 2021-07-15T08:53:18,782 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:18,782 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:18,782 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:18,782 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:18,783 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:18,783 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:18,783 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:18,783 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:18,783 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:18,783 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:18,783 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T08:53:18,783 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T08:53:18,783 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:18,784 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:18,784 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:18,784 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:53:18,784 f2py options: [] 2021-07-15T08:53:18,784 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T08:53:19,129 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,130 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,131 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:19,131 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:19,178 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,185 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,188 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,189 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,455 Reading fortran codes... 2021-07-15T08:53:19,455 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T08:53:19,455 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T08:53:19,455 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T08:53:19,456 analyzeline: Could not crack the use statement. 2021-07-15T08:53:19,456 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:19,456 Post-processing... 2021-07-15T08:53:19,456 Block: boop 2021-07-15T08:53:19,456 Block: calculate_boop 2021-07-15T08:53:19,457 Block: determinant_func 2021-07-15T08:53:19,457 Block: determinant 2021-07-15T08:53:19,457 Block: distance 2021-07-15T08:53:19,457 Block: distance_info 2021-07-15T08:53:19,457 Block: quicksort 2021-07-15T08:53:19,457 Block: quick_sort 2021-07-15T08:53:19,458 Block: cg_function 2021-07-15T08:53:19,458 Block: calculate_cg 2021-07-15T08:53:19,458 Block: angle 2021-07-15T08:53:19,458 Block: angle_info 2021-07-15T08:53:19,458 Block: c_stats 2021-07-15T08:53:19,458 Block: customize_stats 2021-07-15T08:53:19,459 Block: a_stats 2021-07-15T08:53:19,459 Block: all_stats 2021-07-15T08:53:19,459 Post-processing (stage 2)... 2021-07-15T08:53:19,459 Block: boop 2021-07-15T08:53:19,459 Block: unknown_interface 2021-07-15T08:53:19,459 Block: calculate_boop 2021-07-15T08:53:19,459 Block: determinant_func 2021-07-15T08:53:19,459 Block: determinant 2021-07-15T08:53:19,459 Block: distance 2021-07-15T08:53:19,460 Block: distance_info 2021-07-15T08:53:19,460 Block: quicksort 2021-07-15T08:53:19,460 Block: quick_sort 2021-07-15T08:53:19,460 Block: cg_function 2021-07-15T08:53:19,460 Block: calculate_cg 2021-07-15T08:53:19,460 Block: angle 2021-07-15T08:53:19,460 Block: angle_info 2021-07-15T08:53:19,460 Block: c_stats 2021-07-15T08:53:19,460 Block: customize_stats 2021-07-15T08:53:19,461 Block: a_stats 2021-07-15T08:53:19,461 Block: all_stats 2021-07-15T08:53:19,461 Building modules... 2021-07-15T08:53:19,461 Building module "boop"... 2021-07-15T08:53:19,461 Constructing wrapper function "calculate_boop"... 2021-07-15T08:53:19,461 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T08:53:19,461 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:19,461 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:19,461 deter_value = determinant(matrix) 2021-07-15T08:53:19,461 Constructing F90 module support for "distance"... 2021-07-15T08:53:19,462 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:19,462 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:19,462 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:19,462 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:19,462 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:19,462 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:19,462 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:19,462 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:19,462 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:19,463 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:19,463 Constructing F90 module support for "angle"... 2021-07-15T08:53:19,463 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:19,463 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:19,463 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:19,463 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:19,463 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:19,463 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:19,463 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:19,464 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:19,464 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:19,464 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:19,464 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T08:53:19,464 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T08:53:19,464 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:19,464 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:19,465 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:53:19,465 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:53:19,465 f2py options: [] 2021-07-15T08:53:19,465 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T08:53:19,560 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,562 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,562 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:19,563 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:19,604 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,616 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,620 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,621 appenddecl: "dimension" not implemented. 2021-07-15T08:53:19,863 Reading fortran codes... 2021-07-15T08:53:19,863 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T08:53:19,863 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T08:53:19,863 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T08:53:19,864 analyzeline: Could not crack the use statement. 2021-07-15T08:53:19,864 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:19,864 Post-processing... 2021-07-15T08:53:19,864 Block: mro_stats 2021-07-15T08:53:19,864 {'attrspec': ['intent(in)']} 2021-07-15T08:53:19,865 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T08:53:19,865 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T08:53:19,865 Block: sro_to_mro 2021-07-15T08:53:19,865 Block: determinant_func 2021-07-15T08:53:19,865 Block: determinant 2021-07-15T08:53:19,866 Block: distance 2021-07-15T08:53:19,866 Block: distance_info 2021-07-15T08:53:19,866 Block: quicksort 2021-07-15T08:53:19,866 Block: quick_sort 2021-07-15T08:53:19,866 Block: cg_function 2021-07-15T08:53:19,866 Block: calculate_cg 2021-07-15T08:53:19,867 Block: angle 2021-07-15T08:53:19,867 Block: angle_info 2021-07-15T08:53:19,867 Block: c_stats 2021-07-15T08:53:19,867 Block: customize_stats 2021-07-15T08:53:19,867 Block: a_stats 2021-07-15T08:53:19,867 Block: all_stats 2021-07-15T08:53:19,867 Post-processing (stage 2)... 2021-07-15T08:53:19,867 Block: mro_stats 2021-07-15T08:53:19,867 Block: unknown_interface 2021-07-15T08:53:19,867 Block: sro_to_mro 2021-07-15T08:53:19,868 Block: determinant_func 2021-07-15T08:53:19,868 Block: determinant 2021-07-15T08:53:19,868 Block: distance 2021-07-15T08:53:19,868 Block: distance_info 2021-07-15T08:53:19,868 Block: quicksort 2021-07-15T08:53:19,868 Block: quick_sort 2021-07-15T08:53:19,868 Block: cg_function 2021-07-15T08:53:19,868 Block: calculate_cg 2021-07-15T08:53:19,868 Block: angle 2021-07-15T08:53:19,869 Block: angle_info 2021-07-15T08:53:19,869 Block: c_stats 2021-07-15T08:53:19,869 Block: customize_stats 2021-07-15T08:53:19,869 Block: a_stats 2021-07-15T08:53:19,869 Block: all_stats 2021-07-15T08:53:19,869 Building modules... 2021-07-15T08:53:19,869 Building module "mro_stats"... 2021-07-15T08:53:19,869 Constructing wrapper function "sro_to_mro"... 2021-07-15T08:53:19,870 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T08:53:19,870 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:19,870 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:19,870 deter_value = determinant(matrix) 2021-07-15T08:53:19,870 Constructing F90 module support for "distance"... 2021-07-15T08:53:19,870 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:19,870 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:19,870 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:19,870 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:19,871 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:19,871 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:19,871 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:19,871 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:19,871 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:19,871 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:19,871 Constructing F90 module support for "angle"... 2021-07-15T08:53:19,871 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:19,871 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:19,872 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:19,872 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:19,872 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:19,872 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:19,872 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:19,872 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:19,872 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:19,872 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:19,872 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T08:53:19,873 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T08:53:19,873 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:19,873 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:19,873 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:19,873 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:53:19,873 f2py options: [] 2021-07-15T08:53:19,873 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T08:53:19,979 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,980 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:19,981 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:19,981 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:20,011 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,018 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,020 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,021 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,264 Reading fortran codes... 2021-07-15T08:53:20,265 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T08:53:20,265 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:20,265 Post-processing... 2021-07-15T08:53:20,265 Block: neighbor_data 2021-07-15T08:53:20,265 Block: add_neighbor_features 2021-07-15T08:53:20,266 Block: determinant_func 2021-07-15T08:53:20,266 Block: determinant 2021-07-15T08:53:20,266 Block: distance 2021-07-15T08:53:20,266 Block: distance_info 2021-07-15T08:53:20,267 Block: quicksort 2021-07-15T08:53:20,267 Block: quick_sort 2021-07-15T08:53:20,267 Block: cg_function 2021-07-15T08:53:20,267 Block: calculate_cg 2021-07-15T08:53:20,267 Block: angle 2021-07-15T08:53:20,267 Block: angle_info 2021-07-15T08:53:20,267 Block: c_stats 2021-07-15T08:53:20,267 Block: customize_stats 2021-07-15T08:53:20,267 Block: a_stats 2021-07-15T08:53:20,268 Block: all_stats 2021-07-15T08:53:20,268 Post-processing (stage 2)... 2021-07-15T08:53:20,268 Block: neighbor_data 2021-07-15T08:53:20,268 Block: unknown_interface 2021-07-15T08:53:20,268 Block: add_neighbor_features 2021-07-15T08:53:20,268 Block: determinant_func 2021-07-15T08:53:20,268 Block: determinant 2021-07-15T08:53:20,268 Block: distance 2021-07-15T08:53:20,268 Block: distance_info 2021-07-15T08:53:20,269 Block: quicksort 2021-07-15T08:53:20,269 Block: quick_sort 2021-07-15T08:53:20,269 Block: cg_function 2021-07-15T08:53:20,269 Block: calculate_cg 2021-07-15T08:53:20,269 Block: angle 2021-07-15T08:53:20,269 Block: angle_info 2021-07-15T08:53:20,269 Block: c_stats 2021-07-15T08:53:20,269 Block: customize_stats 2021-07-15T08:53:20,270 Block: a_stats 2021-07-15T08:53:20,270 Block: all_stats 2021-07-15T08:53:20,270 Building modules... 2021-07-15T08:53:20,270 Building module "neighbor_data"... 2021-07-15T08:53:20,270 Constructing wrapper function "add_neighbor_features"... 2021-07-15T08:53:20,270 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T08:53:20,271 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:20,271 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:20,271 deter_value = determinant(matrix) 2021-07-15T08:53:20,271 Constructing F90 module support for "distance"... 2021-07-15T08:53:20,271 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:20,271 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:20,271 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:20,271 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:20,271 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:20,272 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:20,272 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:20,272 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:20,272 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:20,272 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:20,272 Constructing F90 module support for "angle"... 2021-07-15T08:53:20,272 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:20,272 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:20,272 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:20,273 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:20,273 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:20,273 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:20,273 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:20,273 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:20,273 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:20,273 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:20,273 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T08:53:20,274 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T08:53:20,274 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:20,274 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:20,274 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:53:20,274 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:53:20,274 f2py options: [] 2021-07-15T08:53:20,274 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T08:53:20,375 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,377 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,378 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:20,378 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:20,408 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,415 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,417 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,418 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,665 Reading fortran codes... 2021-07-15T08:53:20,666 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T08:53:20,666 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T08:53:20,666 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T08:53:20,666 analyzeline: Could not crack the use statement. 2021-07-15T08:53:20,666 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:20,666 Post-processing... 2021-07-15T08:53:20,666 Block: distance_stats 2021-07-15T08:53:20,667 Block: cn_dist 2021-07-15T08:53:20,667 Block: cutoff_distance_stats 2021-07-15T08:53:20,667 Block: determinant_func 2021-07-15T08:53:20,667 Block: determinant 2021-07-15T08:53:20,667 Block: distance 2021-07-15T08:53:20,668 Block: distance_info 2021-07-15T08:53:20,668 Block: quicksort 2021-07-15T08:53:20,668 Block: quick_sort 2021-07-15T08:53:20,668 Block: cg_function 2021-07-15T08:53:20,668 Block: calculate_cg 2021-07-15T08:53:20,669 Block: angle 2021-07-15T08:53:20,669 Block: angle_info 2021-07-15T08:53:20,669 Block: c_stats 2021-07-15T08:53:20,669 Block: customize_stats 2021-07-15T08:53:20,669 Block: a_stats 2021-07-15T08:53:20,669 Block: all_stats 2021-07-15T08:53:20,669 Post-processing (stage 2)... 2021-07-15T08:53:20,669 Block: distance_stats 2021-07-15T08:53:20,669 Block: unknown_interface 2021-07-15T08:53:20,670 Block: cn_dist 2021-07-15T08:53:20,670 Block: cutoff_distance_stats 2021-07-15T08:53:20,670 Block: determinant_func 2021-07-15T08:53:20,670 Block: determinant 2021-07-15T08:53:20,670 Block: distance 2021-07-15T08:53:20,670 Block: distance_info 2021-07-15T08:53:20,670 Block: quicksort 2021-07-15T08:53:20,670 Block: quick_sort 2021-07-15T08:53:20,670 Block: cg_function 2021-07-15T08:53:20,671 Block: calculate_cg 2021-07-15T08:53:20,671 Block: angle 2021-07-15T08:53:20,671 Block: angle_info 2021-07-15T08:53:20,671 Block: c_stats 2021-07-15T08:53:20,671 Block: customize_stats 2021-07-15T08:53:20,671 Block: a_stats 2021-07-15T08:53:20,671 Block: all_stats 2021-07-15T08:53:20,671 Building modules... 2021-07-15T08:53:20,671 Building module "distance_stats"... 2021-07-15T08:53:20,672 Constructing wrapper function "cn_dist"... 2021-07-15T08:53:20,672 cn = cn_dist(n_neighbor_list) 2021-07-15T08:53:20,672 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T08:53:20,672 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T08:53:20,672 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:20,672 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:20,672 deter_value = determinant(matrix) 2021-07-15T08:53:20,672 Constructing F90 module support for "distance"... 2021-07-15T08:53:20,672 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:20,673 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:20,673 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:20,673 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:20,673 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:20,673 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:20,673 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:20,673 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:20,673 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:20,673 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:20,674 Constructing F90 module support for "angle"... 2021-07-15T08:53:20,674 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:20,674 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:20,674 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:20,674 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:20,674 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:20,674 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:20,674 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:20,674 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:20,674 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:20,675 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:20,675 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T08:53:20,675 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T08:53:20,675 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:20,675 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:20,675 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:20,675 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:53:20,675 f2py options: [] 2021-07-15T08:53:20,676 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T08:53:20,780 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,781 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,782 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:53:20,782 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:53:20,817 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,824 appenddecl: "dimension" not implemented. 2021-07-15T08:53:20,826 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:53:20,827 appenddecl: "dimension" not implemented. 2021-07-15T08:53:21,083 Reading fortran codes... 2021-07-15T08:53:21,083 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T08:53:21,084 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:53:21,084 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T08:53:21,084 analyzeline: Could not crack the use statement. 2021-07-15T08:53:21,084 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T08:53:21,084 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T08:53:21,084 analyzeline: Could not crack the use statement. 2021-07-15T08:53:21,084 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:53:21,085 Post-processing... 2021-07-15T08:53:21,085 Block: distance_nn 2021-07-15T08:53:21,085 Block: distance_neighbor 2021-07-15T08:53:21,085 Block: determinant_func 2021-07-15T08:53:21,085 Block: determinant 2021-07-15T08:53:21,085 Block: distance 2021-07-15T08:53:21,086 Block: distance_info 2021-07-15T08:53:21,086 Block: quicksort 2021-07-15T08:53:21,086 Block: quick_sort 2021-07-15T08:53:21,086 Block: cg_function 2021-07-15T08:53:21,086 Block: calculate_cg 2021-07-15T08:53:21,086 Block: angle 2021-07-15T08:53:21,087 Block: angle_info 2021-07-15T08:53:21,087 Block: c_stats 2021-07-15T08:53:21,087 Block: customize_stats 2021-07-15T08:53:21,087 Block: a_stats 2021-07-15T08:53:21,087 Block: all_stats 2021-07-15T08:53:21,088 Post-processing (stage 2)... 2021-07-15T08:53:21,088 Block: distance_nn 2021-07-15T08:53:21,088 Block: unknown_interface 2021-07-15T08:53:21,088 Block: distance_neighbor 2021-07-15T08:53:21,088 Block: determinant_func 2021-07-15T08:53:21,088 Block: determinant 2021-07-15T08:53:21,089 Block: distance 2021-07-15T08:53:21,089 Block: distance_info 2021-07-15T08:53:21,089 Block: quicksort 2021-07-15T08:53:21,089 Block: quick_sort 2021-07-15T08:53:21,090 Block: cg_function 2021-07-15T08:53:21,090 Block: calculate_cg 2021-07-15T08:53:21,090 Block: angle 2021-07-15T08:53:21,090 Block: angle_info 2021-07-15T08:53:21,090 Block: c_stats 2021-07-15T08:53:21,091 Block: customize_stats 2021-07-15T08:53:21,091 Block: a_stats 2021-07-15T08:53:21,091 Block: all_stats 2021-07-15T08:53:21,091 Building modules... 2021-07-15T08:53:21,091 Building module "distance_nn"... 2021-07-15T08:53:21,092 Constructing wrapper function "distance_neighbor"... 2021-07-15T08:53:21,092 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:53:21,092 Constructing F90 module support for "determinant_func"... 2021-07-15T08:53:21,092 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:53:21,093 deter_value = determinant(matrix) 2021-07-15T08:53:21,093 Constructing F90 module support for "distance"... 2021-07-15T08:53:21,093 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:53:21,093 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:21,093 Constructing F90 module support for "quicksort"... 2021-07-15T08:53:21,094 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:53:21,094 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:53:21,094 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:53:21,094 Constructing F90 module support for "cg_function"... 2021-07-15T08:53:21,094 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:53:21,095 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:53:21,095 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:53:21,095 Constructing F90 module support for "angle"... 2021-07-15T08:53:21,095 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:53:21,095 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:53:21,096 Constructing F90 module support for "c_stats"... 2021-07-15T08:53:21,096 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:53:21,096 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:53:21,096 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:53:21,097 Constructing F90 module support for "a_stats"... 2021-07-15T08:53:21,097 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:53:21,097 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:53:21,097 stats = all_stats(list,[len_bn]) 2021-07-15T08:53:21,097 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T08:53:21,098 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T08:53:21,098 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:21,098 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:21,098 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:53:21,098 build_src: building npy-pkg config files 2021-07-15T08:53:21,098 creating /tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info 2021-07-15T08:53:21,099 writing /tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/PKG-INFO 2021-07-15T08:53:21,099 writing dependency_links to /tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/dependency_links.txt 2021-07-15T08:53:21,099 writing requirements to /tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/requires.txt 2021-07-15T08:53:21,099 writing top-level names to /tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/top_level.txt 2021-07-15T08:53:21,099 writing manifest file '/tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:53:21,155 reading manifest file '/tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:53:21,161 writing manifest file '/tmp/pip-pip-egg-info-l37chzgv/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:53:21,302 Source in /tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280 has version 0.3.2, which satisfies requirement amlearn==0.3.2 from https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e 2021-07-15T08:53:21,302 Removed amlearn==0.3.2 from https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e from build tracker '/tmp/pip-req-tracker-0ysw3gme' 2021-07-15T08:53:21,307 Created temporary directory: /tmp/pip-unpack-ohjmocf8 2021-07-15T08:53:21,307 Building wheels for collected packages: amlearn 2021-07-15T08:53:21,311 Created temporary directory: /tmp/pip-wheel-qzj2yqxe 2021-07-15T08:53:21,312 Building wheel for amlearn (setup.py): started 2021-07-15T08:53:21,312 Destination directory: /tmp/pip-wheel-qzj2yqxe 2021-07-15T08:53:21,312 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qzj2yqxe 2021-07-15T08:53:22,965 running bdist_wheel 2021-07-15T08:53:22,966 running build 2021-07-15T08:53:22,967 running config_cc 2021-07-15T08:53:22,967 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T08:53:22,968 running config_fc 2021-07-15T08:53:22,968 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T08:53:22,968 running build_src 2021-07-15T08:53:22,968 build_src 2021-07-15T08:53:22,968 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:53:22,968 f2py options: [] 2021-07-15T08:53:22,968 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:22,969 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,062 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,062 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:53:23,062 f2py options: [] 2021-07-15T08:53:23,062 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,062 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,062 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,063 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:53:23,063 f2py options: [] 2021-07-15T08:53:23,063 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,063 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,063 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,063 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:53:23,064 f2py options: [] 2021-07-15T08:53:23,064 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,064 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,064 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,064 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:53:23,064 f2py options: [] 2021-07-15T08:53:23,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,065 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,065 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:53:23,065 f2py options: [] 2021-07-15T08:53:23,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,066 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,066 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:53:23,066 f2py options: [] 2021-07-15T08:53:23,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,066 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,067 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:53:23,067 f2py options: [] 2021-07-15T08:53:23,067 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:53:23,067 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:53:23,067 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:53:23,067 build_src: building npy-pkg config files 2021-07-15T08:53:23,068 running build_py 2021-07-15T08:53:23,072 creating build/lib.linux-armv7l-3.9 2021-07-15T08:53:23,072 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,074 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,076 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,077 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,079 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,081 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,083 copying scripts/classification.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,085 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,086 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,088 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,090 copying scripts/regression.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:53:23,092 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:53:23,093 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:53:23,095 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:53:23,097 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,098 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,100 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,102 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,104 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,105 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,107 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,109 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,111 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,113 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,115 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,116 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,119 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,121 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,123 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,125 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:53:23,127 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,128 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,130 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,132 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,135 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,137 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,139 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,140 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:23,143 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:53:23,144 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:53:23,145 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:53:23,147 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:53:23,149 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:53:23,150 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:53:23,151 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:53:23,153 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:53:23,154 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:53:23,158 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:53:23,161 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:53:23,163 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:23,164 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:23,166 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,167 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,169 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,171 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,173 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,175 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,177 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:53:23,178 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,180 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,181 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:53:23,189 running build_ext 2021-07-15T08:53:23,195 customize UnixCCompiler 2021-07-15T08:53:23,196 customize UnixCCompiler using build_ext 2021-07-15T08:53:23,309 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T08:53:23,309 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,310 creating /tmp/tmpm20l40zv/home 2021-07-15T08:53:23,311 creating /tmp/tmpm20l40zv/home/piwheels 2021-07-15T08:53:23,311 creating /tmp/tmpm20l40zv/home/piwheels/.local 2021-07-15T08:53:23,312 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib 2021-07-15T08:53:23,313 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9 2021-07-15T08:53:23,313 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T08:53:23,314 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T08:53:23,315 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T08:53:23,315 creating /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T08:53:23,316 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,316 extra options: '-march=native' 2021-07-15T08:53:23,397 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T08:53:23,398 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,398 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,398 extra options: '-O3' 2021-07-15T08:53:23,479 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T08:53:23,479 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,480 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,480 extra options: '-Werror' 2021-07-15T08:53:23,560 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T08:53:23,566 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T08:53:23,573 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T08:53:23,573 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,574 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,574 extra options: '-mfpu=neon' 2021-07-15T08:53:23,655 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:53:23,656 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,656 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,656 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T08:53:23,737 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:53:23,738 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:23,738 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:23,738 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T08:53:24,144 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T08:53:24,144 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:24,145 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:24,145 extra options: '-mfpu=neon -Werror' 2021-07-15T08:53:24,512 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T08:53:24,512 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:24,512 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:24,512 extra options: '-mfpu=neon-vfpv4' 2021-07-15T08:53:24,594 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T08:53:24,594 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:24,595 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:24,595 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T08:53:24,987 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:53:24,987 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:24,987 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:24,988 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T08:53:25,068 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:53:25,069 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:25,070 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:25,070 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T08:53:25,496 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T08:53:25,497 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:25,497 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:25,497 extra options: '-march=armv8.2-a+fp16' 2021-07-15T08:53:25,578 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T08:53:25,578 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:25,579 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:25,579 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T08:53:26,026 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T08:53:26,027 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:26,027 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:26,027 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T08:53:26,108 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T08:53:26,109 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:26,109 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:26,109 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T08:53:26,529 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T08:53:26,529 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T08:53:26,529 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:53:26,529 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:53:26,530 | ^~~~~~~~~~~~~~ 2021-07-15T08:53:26,530 | vfmlal_low_f16 2021-07-15T08:53:26,530 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T08:53:26,530 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:53:26,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:53:26,530 | | 2021-07-15T08:53:26,530 | int 2021-07-15T08:53:26,530 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:53:26,531 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T08:53:26,531 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T08:53:26,531 | ~~~~~~~~~~~~^~~ 2021-07-15T08:53:26,531 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:53:26,531 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:53:26,531 | ^~~~~~~~~~~~~~~~ 2021-07-15T08:53:26,531 | vfmlslq_high_f16 2021-07-15T08:53:26,531 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T08:53:26,532 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:53:26,532 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:53:26,532 | | 2021-07-15T08:53:26,532 | int 2021-07-15T08:53:26,532 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:53:26,532 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T08:53:26,532 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T08:53:26,532 | ~~~~~~~~~~~~^~~ 2021-07-15T08:53:26,533 cc1: all warnings being treated as errors 2021-07-15T08:53:26,535 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:53:26,542 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T08:53:26,543 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:26,543 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:26,543 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T08:53:26,624 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T08:53:26,625 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:26,625 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:53:26,625 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T08:53:27,052 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpm20l40zv/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T08:53:27,052 /tmp/cc64SpGg.s: Assembler messages: 2021-07-15T08:53:27,052 /tmp/cc64SpGg.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T08:53:27,058 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:53:27,064 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T08:53:27,069 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T08:53:27,075 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE42 VSX2 FMA4 AVX512F VSX3 SSE2 VSX XOP (AVX2 FMA3) AVX512_SKX) not part of baseline or dispatch-able features 2021-07-15T08:53:27,081 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T08:53:27,086 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T08:53:27,137 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T08:53:27,137 customize Gnu95FCompiler 2021-07-15T08:53:27,165 Found executable /usr/bin/gfortran 2021-07-15T08:53:27,214 customize Gnu95FCompiler 2021-07-15T08:53:27,261 customize Gnu95FCompiler using build_ext 2021-07-15T08:53:27,262 building 'amlearn.featurize.src.utils' extension 2021-07-15T08:53:27,264 compiling C sources 2021-07-15T08:53:27,264 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:53:27,265 creating build/temp.linux-armv7l-3.9/build 2021-07-15T08:53:27,265 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:53:27,266 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:53:27,267 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:27,267 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:27,268 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T08:53:27,268 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:53:27,269 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:53:27,270 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:27,270 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:27,271 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:53:27,290 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:53:27,290 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T08:53:27,674 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:53:27,674 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:53:27,675 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:53:27,675 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:53:27,675 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T08:53:27,675 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:53:27,675 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:53:27,675 | ^~~~~~~ 2021-07-15T08:53:27,685 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:53:27,686 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:53:27,686 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:53:27,686 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:53:27,686 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T08:53:27,686 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:53:27,686 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:53:27,686 | ^~~~~~~ 2021-07-15T08:53:27,757 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T08:53:27,757 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T08:53:27,757 | ^~~~~~~~~ 2021-07-15T08:53:28,905 compiling Fortran 90 module sources 2021-07-15T08:53:28,906 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T08:53:28,906 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:53:28,907 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:53:28,908 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:53:28,909 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:53:28,909 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:53:28,909 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:53:28,909 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T08:53:28,914 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T08:53:28,982 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T08:53:28,983 259 | REAL(16) :: std 2021-07-15T08:53:28,983 | 1 2021-07-15T08:53:28,983 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T08:53:28,984 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T08:53:28,985 285 | std = std + (list(atom) - mean)**2 2021-07-15T08:53:28,985 | 1 2021-07-15T08:53:28,985 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T08:53:28,992 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T08:53:28,993 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T08:53:28,993 Platform : 2021-07-15T08:53:28,993 Architecture: armhf 2021-07-15T08:53:28,993 Compiler : gcc 2021-07-15T08:53:28,993 CPU baseline : 2021-07-15T08:53:28,994 Requested : 'min' 2021-07-15T08:53:28,994 Enabled : none 2021-07-15T08:53:28,994 Flags : none 2021-07-15T08:53:28,994 Extra checks: none 2021-07-15T08:53:28,994 CPU dispatch : 2021-07-15T08:53:28,994 Requested : 'max -xop -fma4' 2021-07-15T08:53:28,994 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T08:53:28,994 Generated : none 2021-07-15T08:53:28,996 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T08:53:29,159 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T08:53:29,160 ERROR: Failed building wheel for amlearn 2021-07-15T08:53:29,160 Running setup.py clean for amlearn 2021-07-15T08:53:29,161 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qh4o4dvy/amlearn_2fe6867e47884a94bc97855068aeb280/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T08:53:30,800 running clean 2021-07-15T08:53:30,801 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:53:30,816 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:53:30,839 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T08:53:30,839 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T08:53:30,969 Failed to build amlearn 2021-07-15T08:53:30,969 ERROR: Failed to build one or more wheels 2021-07-15T08:53:30,970 Exception information: 2021-07-15T08:53:30,970 Traceback (most recent call last): 2021-07-15T08:53:30,970 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T08:53:30,970 status = self.run(options, args) 2021-07-15T08:53:30,970 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T08:53:30,970 return func(self, options, args) 2021-07-15T08:53:30,970 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T08:53:30,970 raise CommandError( 2021-07-15T08:53:30,970 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T08:53:30,973 Removed build tracker: '/tmp/pip-req-tracker-0ysw3gme'