2021-07-15T08:54:08,120 Created temporary directory: /tmp/pip-ephem-wheel-cache-l28eqiha 2021-07-15T08:54:08,123 Created temporary directory: /tmp/pip-req-tracker-7rq1ckc2 2021-07-15T08:54:08,123 Initialized build tracking at /tmp/pip-req-tracker-7rq1ckc2 2021-07-15T08:54:08,124 Created build tracker: /tmp/pip-req-tracker-7rq1ckc2 2021-07-15T08:54:08,124 Entered build tracker: /tmp/pip-req-tracker-7rq1ckc2 2021-07-15T08:54:08,124 Created temporary directory: /tmp/pip-wheel-xwv7o5tx 2021-07-15T08:54:08,153 1 location(s) to search for versions of amlearn: 2021-07-15T08:54:08,153 * https://pypi.org/simple/amlearn/ 2021-07-15T08:54:08,154 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T08:54:08,154 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T08:54:08,156 Found index url https://pypi.org/simple 2021-07-15T08:54:08,249 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T08:54:08,250 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T08:54:08,250 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T08:54:08,251 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T08:54:08,251 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T08:54:08,251 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T08:54:08,251 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T08:54:08,252 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T08:54:08,252 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T08:54:08,255 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T08:54:08,256 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T08:54:08,256 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T08:54:08,256 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T08:54:08,256 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T08:54:08,276 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T08:54:08,295 Collecting amlearn==0.3.3 2021-07-15T08:54:08,296 Created temporary directory: /tmp/pip-unpack-1wvzl1nz 2021-07-15T08:54:08,652 Downloading amlearn-0.3.3.tar.gz (84 kB) 2021-07-15T08:54:08,843 Added amlearn==0.3.3 from https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d to build tracker '/tmp/pip-req-tracker-7rq1ckc2' 2021-07-15T08:54:08,844 Running setup.py (path:/tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/setup.py) egg_info for package amlearn 2021-07-15T08:54:08,845 Created temporary directory: /tmp/pip-pip-egg-info-63i3mwjm 2021-07-15T08:54:08,845 Running command python setup.py egg_info 2021-07-15T08:54:10,535 running egg_info 2021-07-15T08:54:10,536 running build_src 2021-07-15T08:54:10,539 build_src 2021-07-15T08:54:10,539 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:54:10,539 f2py options: [] 2021-07-15T08:54:10,539 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:54:10,539 creating build 2021-07-15T08:54:10,540 creating build/src.linux-armv7l-3.9 2021-07-15T08:54:10,540 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:54:10,541 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:10,542 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:10,737 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:10,738 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:10,739 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:10,739 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:10,779 appenddecl: "dimension" not implemented. 2021-07-15T08:54:10,791 appenddecl: "dimension" not implemented. 2021-07-15T08:54:10,795 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:10,796 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,012 Reading fortran codes... 2021-07-15T08:54:11,013 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:11,013 Post-processing... 2021-07-15T08:54:11,013 Block: utils 2021-07-15T08:54:11,013 Block: determinant_func 2021-07-15T08:54:11,013 Block: determinant 2021-07-15T08:54:11,013 Block: distance 2021-07-15T08:54:11,013 Block: distance_info 2021-07-15T08:54:11,013 Block: quicksort 2021-07-15T08:54:11,014 Block: quick_sort 2021-07-15T08:54:11,014 Block: cg_function 2021-07-15T08:54:11,014 Block: calculate_cg 2021-07-15T08:54:11,014 Block: angle 2021-07-15T08:54:11,014 Block: angle_info 2021-07-15T08:54:11,014 Block: c_stats 2021-07-15T08:54:11,014 Block: customize_stats 2021-07-15T08:54:11,014 Block: a_stats 2021-07-15T08:54:11,015 Block: all_stats 2021-07-15T08:54:11,015 Post-processing (stage 2)... 2021-07-15T08:54:11,015 Block: utils 2021-07-15T08:54:11,015 Block: unknown_interface 2021-07-15T08:54:11,015 Block: determinant_func 2021-07-15T08:54:11,015 Block: determinant 2021-07-15T08:54:11,015 Block: distance 2021-07-15T08:54:11,015 Block: distance_info 2021-07-15T08:54:11,016 Block: quicksort 2021-07-15T08:54:11,016 Block: quick_sort 2021-07-15T08:54:11,016 Block: cg_function 2021-07-15T08:54:11,016 Block: calculate_cg 2021-07-15T08:54:11,016 Block: angle 2021-07-15T08:54:11,016 Block: angle_info 2021-07-15T08:54:11,016 Block: c_stats 2021-07-15T08:54:11,016 Block: customize_stats 2021-07-15T08:54:11,017 Block: a_stats 2021-07-15T08:54:11,017 Block: all_stats 2021-07-15T08:54:11,017 Building modules... 2021-07-15T08:54:11,017 Building module "utils"... 2021-07-15T08:54:11,017 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:11,017 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:11,017 deter_value = determinant(matrix) 2021-07-15T08:54:11,018 Constructing F90 module support for "distance"... 2021-07-15T08:54:11,018 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:11,018 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:11,018 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:11,018 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:11,018 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:11,018 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:11,018 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:11,019 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:11,019 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:11,019 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:11,019 Constructing F90 module support for "angle"... 2021-07-15T08:54:11,019 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:11,019 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:11,019 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:11,020 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:11,020 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:11,020 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:11,020 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:11,020 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:11,020 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:11,020 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:11,020 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T08:54:11,021 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T08:54:11,021 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:11,021 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:11,021 creating build/src.linux-armv7l-3.9/build 2021-07-15T08:54:11,021 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:54:11,021 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:54:11,021 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:11,022 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:11,022 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:11,022 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:11,023 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:54:11,023 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:54:11,023 f2py options: [] 2021-07-15T08:54:11,023 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T08:54:11,227 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,228 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,229 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:11,229 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:11,279 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,286 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,288 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,289 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,594 Reading fortran codes... 2021-07-15T08:54:11,594 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T08:54:11,594 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:54:11,594 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T08:54:11,594 analyzeline: Could not crack the use statement. 2021-07-15T08:54:11,595 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:11,595 Post-processing... 2021-07-15T08:54:11,595 Block: voronoi_nn 2021-07-15T08:54:11,595 Block: determinant 2021-07-15T08:54:11,595 Block: voronoi 2021-07-15T08:54:11,595 Block: determinant_func 2021-07-15T08:54:11,595 Block: determinant 2021-07-15T08:54:11,595 Block: distance 2021-07-15T08:54:11,596 Block: distance_info 2021-07-15T08:54:11,596 Block: quicksort 2021-07-15T08:54:11,596 Block: quick_sort 2021-07-15T08:54:11,596 Block: cg_function 2021-07-15T08:54:11,596 Block: calculate_cg 2021-07-15T08:54:11,596 Block: angle 2021-07-15T08:54:11,596 Block: angle_info 2021-07-15T08:54:11,596 Block: c_stats 2021-07-15T08:54:11,596 Block: customize_stats 2021-07-15T08:54:11,597 Block: a_stats 2021-07-15T08:54:11,597 Block: all_stats 2021-07-15T08:54:11,597 Post-processing (stage 2)... 2021-07-15T08:54:11,597 Block: voronoi_nn 2021-07-15T08:54:11,597 Block: unknown_interface 2021-07-15T08:54:11,597 Block: determinant 2021-07-15T08:54:11,597 Block: voronoi 2021-07-15T08:54:11,597 Block: determinant_func 2021-07-15T08:54:11,597 Block: determinant 2021-07-15T08:54:11,598 Block: distance 2021-07-15T08:54:11,598 Block: distance_info 2021-07-15T08:54:11,598 Block: quicksort 2021-07-15T08:54:11,598 Block: quick_sort 2021-07-15T08:54:11,598 Block: cg_function 2021-07-15T08:54:11,598 Block: calculate_cg 2021-07-15T08:54:11,598 Block: angle 2021-07-15T08:54:11,598 Block: angle_info 2021-07-15T08:54:11,598 Block: c_stats 2021-07-15T08:54:11,599 Block: customize_stats 2021-07-15T08:54:11,599 Block: a_stats 2021-07-15T08:54:11,599 Block: all_stats 2021-07-15T08:54:11,599 Building modules... 2021-07-15T08:54:11,599 Building module "voronoi_nn"... 2021-07-15T08:54:11,599 Constructing wrapper function "determinant"... 2021-07-15T08:54:11,599 deter_value = determinant(face) 2021-07-15T08:54:11,599 Constructing wrapper function "voronoi"... 2021-07-15T08:54:11,600 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:54:11,600 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:11,600 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:11,600 deter_value = determinant(matrix) 2021-07-15T08:54:11,600 Constructing F90 module support for "distance"... 2021-07-15T08:54:11,600 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:11,600 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:11,600 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:11,601 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:11,601 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:11,601 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:11,601 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:11,601 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:11,601 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:11,601 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:11,601 Constructing F90 module support for "angle"... 2021-07-15T08:54:11,601 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:11,601 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:11,602 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:11,602 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:11,602 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:11,602 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:11,602 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:11,602 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:11,602 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:11,602 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:11,602 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T08:54:11,603 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T08:54:11,603 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:11,603 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:11,603 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:54:11,603 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:54:11,603 f2py options: [] 2021-07-15T08:54:11,603 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T08:54:11,817 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,819 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,819 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:11,820 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:11,863 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T08:54:11,924 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,936 appenddecl: "dimension" not implemented. 2021-07-15T08:54:11,940 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:11,941 appenddecl: "dimension" not implemented. 2021-07-15T08:54:12,597 Reading fortran codes... 2021-07-15T08:54:12,598 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T08:54:12,598 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:54:12,598 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:54:12,598 analyzeline: Could not crack the use statement. 2021-07-15T08:54:12,598 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T08:54:12,598 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T08:54:12,599 analyzeline: Could not crack the use statement. 2021-07-15T08:54:12,599 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T08:54:12,599 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T08:54:12,599 analyzeline: Could not crack the use statement. 2021-07-15T08:54:12,599 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T08:54:12,600 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T08:54:12,600 analyzeline: Could not crack the use statement. 2021-07-15T08:54:12,600 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:12,600 Post-processing... 2021-07-15T08:54:12,600 Block: voronoi_stats 2021-07-15T08:54:12,600 Block: voronoi_index 2021-07-15T08:54:12,601 Block: i_fold_symmetry 2021-07-15T08:54:12,601 Block: line_percent 2021-07-15T08:54:12,601 {} 2021-07-15T08:54:12,601 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:54:12,601 vars2fortran: No typespec for argument "n_voro". 2021-07-15T08:54:12,601 {} 2021-07-15T08:54:12,602 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T08:54:12,602 vars2fortran: No typespec for argument "n_target". 2021-07-15T08:54:12,602 Block: character_motif 2021-07-15T08:54:12,602 Block: area_wt_i_fold_symmetry 2021-07-15T08:54:12,602 Block: vol_wt_i_fold_symmetry 2021-07-15T08:54:12,602 Block: voronoi_area_stats 2021-07-15T08:54:12,603 Block: voronoi_area_stats_separate 2021-07-15T08:54:12,603 Block: voronoi_vol_stats 2021-07-15T08:54:12,603 Block: voronoi_vol_stats_separate 2021-07-15T08:54:12,603 Block: voronoi_distance_stats 2021-07-15T08:54:12,603 Block: determinant_func 2021-07-15T08:54:12,603 Block: determinant 2021-07-15T08:54:12,604 Block: distance 2021-07-15T08:54:12,604 Block: distance_info 2021-07-15T08:54:12,604 Block: quicksort 2021-07-15T08:54:12,604 Block: quick_sort 2021-07-15T08:54:12,604 Block: cg_function 2021-07-15T08:54:12,605 Block: calculate_cg 2021-07-15T08:54:12,605 Block: angle 2021-07-15T08:54:12,605 Block: angle_info 2021-07-15T08:54:12,605 Block: c_stats 2021-07-15T08:54:12,605 Block: customize_stats 2021-07-15T08:54:12,605 Block: a_stats 2021-07-15T08:54:12,606 Block: all_stats 2021-07-15T08:54:12,606 Post-processing (stage 2)... 2021-07-15T08:54:12,606 Block: voronoi_stats 2021-07-15T08:54:12,606 Block: unknown_interface 2021-07-15T08:54:12,606 Block: voronoi_index 2021-07-15T08:54:12,606 Block: i_fold_symmetry 2021-07-15T08:54:12,607 Block: line_percent 2021-07-15T08:54:12,607 Block: character_motif 2021-07-15T08:54:12,607 Block: area_wt_i_fold_symmetry 2021-07-15T08:54:12,607 Block: vol_wt_i_fold_symmetry 2021-07-15T08:54:12,607 Block: voronoi_area_stats 2021-07-15T08:54:12,607 Block: voronoi_area_stats_separate 2021-07-15T08:54:12,607 Block: voronoi_vol_stats 2021-07-15T08:54:12,608 Block: voronoi_vol_stats_separate 2021-07-15T08:54:12,608 Block: voronoi_distance_stats 2021-07-15T08:54:12,608 Block: determinant_func 2021-07-15T08:54:12,608 Block: determinant 2021-07-15T08:54:12,608 Block: distance 2021-07-15T08:54:12,609 Block: distance_info 2021-07-15T08:54:12,609 Block: quicksort 2021-07-15T08:54:12,609 Block: quick_sort 2021-07-15T08:54:12,609 Block: cg_function 2021-07-15T08:54:12,609 Block: calculate_cg 2021-07-15T08:54:12,609 Block: angle 2021-07-15T08:54:12,610 Block: angle_info 2021-07-15T08:54:12,610 Block: c_stats 2021-07-15T08:54:12,610 Block: customize_stats 2021-07-15T08:54:12,610 Block: a_stats 2021-07-15T08:54:12,610 Block: all_stats 2021-07-15T08:54:12,610 Building modules... 2021-07-15T08:54:12,611 Building module "voronoi_stats"... 2021-07-15T08:54:12,611 Constructing wrapper function "voronoi_index"... 2021-07-15T08:54:12,611 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,611 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T08:54:12,611 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,611 Constructing wrapper function "line_percent"... 2021-07-15T08:54:12,612 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T08:54:12,612 Constructing wrapper function "character_motif"... 2021-07-15T08:54:12,612 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T08:54:12,612 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T08:54:12,612 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,613 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T08:54:12,613 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,613 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T08:54:12,613 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,613 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T08:54:12,613 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,614 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T08:54:12,614 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,614 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T08:54:12,614 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,614 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T08:54:12,614 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T08:54:12,615 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:12,615 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:12,615 deter_value = determinant(matrix) 2021-07-15T08:54:12,615 Constructing F90 module support for "distance"... 2021-07-15T08:54:12,615 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:12,616 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:12,616 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:12,616 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:12,616 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:12,616 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:12,616 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:12,617 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:12,617 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:12,617 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:12,617 Constructing F90 module support for "angle"... 2021-07-15T08:54:12,617 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:12,617 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:12,617 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:12,618 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:12,618 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:12,618 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:12,618 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:12,618 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:12,618 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:12,619 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:12,619 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T08:54:12,619 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T08:54:12,619 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:12,619 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:12,620 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:12,620 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:54:12,620 f2py options: [] 2021-07-15T08:54:12,620 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T08:54:12,973 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:12,974 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:12,975 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:12,975 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:13,022 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,029 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,032 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,033 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,314 Reading fortran codes... 2021-07-15T08:54:13,314 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T08:54:13,314 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T08:54:13,314 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T08:54:13,314 analyzeline: Could not crack the use statement. 2021-07-15T08:54:13,314 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:13,315 Post-processing... 2021-07-15T08:54:13,315 Block: boop 2021-07-15T08:54:13,315 Block: calculate_boop 2021-07-15T08:54:13,315 Block: determinant_func 2021-07-15T08:54:13,315 Block: determinant 2021-07-15T08:54:13,315 Block: distance 2021-07-15T08:54:13,315 Block: distance_info 2021-07-15T08:54:13,315 Block: quicksort 2021-07-15T08:54:13,316 Block: quick_sort 2021-07-15T08:54:13,316 Block: cg_function 2021-07-15T08:54:13,316 Block: calculate_cg 2021-07-15T08:54:13,316 Block: angle 2021-07-15T08:54:13,316 Block: angle_info 2021-07-15T08:54:13,316 Block: c_stats 2021-07-15T08:54:13,316 Block: customize_stats 2021-07-15T08:54:13,317 Block: a_stats 2021-07-15T08:54:13,317 Block: all_stats 2021-07-15T08:54:13,317 Post-processing (stage 2)... 2021-07-15T08:54:13,317 Block: boop 2021-07-15T08:54:13,317 Block: unknown_interface 2021-07-15T08:54:13,317 Block: calculate_boop 2021-07-15T08:54:13,317 Block: determinant_func 2021-07-15T08:54:13,317 Block: determinant 2021-07-15T08:54:13,317 Block: distance 2021-07-15T08:54:13,318 Block: distance_info 2021-07-15T08:54:13,318 Block: quicksort 2021-07-15T08:54:13,318 Block: quick_sort 2021-07-15T08:54:13,318 Block: cg_function 2021-07-15T08:54:13,318 Block: calculate_cg 2021-07-15T08:54:13,318 Block: angle 2021-07-15T08:54:13,318 Block: angle_info 2021-07-15T08:54:13,318 Block: c_stats 2021-07-15T08:54:13,318 Block: customize_stats 2021-07-15T08:54:13,318 Block: a_stats 2021-07-15T08:54:13,319 Block: all_stats 2021-07-15T08:54:13,319 Building modules... 2021-07-15T08:54:13,319 Building module "boop"... 2021-07-15T08:54:13,319 Constructing wrapper function "calculate_boop"... 2021-07-15T08:54:13,319 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T08:54:13,319 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:13,319 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:13,319 deter_value = determinant(matrix) 2021-07-15T08:54:13,319 Constructing F90 module support for "distance"... 2021-07-15T08:54:13,320 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:13,320 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:13,320 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:13,320 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:13,320 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:13,320 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:13,320 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:13,320 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:13,320 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:13,321 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:13,321 Constructing F90 module support for "angle"... 2021-07-15T08:54:13,321 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:13,321 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:13,321 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:13,321 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:13,321 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:13,321 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:13,321 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:13,322 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:13,322 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:13,322 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:13,322 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T08:54:13,322 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T08:54:13,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:13,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:13,322 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:54:13,322 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:54:13,323 f2py options: [] 2021-07-15T08:54:13,323 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T08:54:13,422 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,423 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,424 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:13,424 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:13,491 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,503 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,506 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,507 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,758 Reading fortran codes... 2021-07-15T08:54:13,758 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T08:54:13,758 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T08:54:13,759 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T08:54:13,759 analyzeline: Could not crack the use statement. 2021-07-15T08:54:13,759 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:13,759 Post-processing... 2021-07-15T08:54:13,759 Block: mro_stats 2021-07-15T08:54:13,759 {'attrspec': ['intent(in)']} 2021-07-15T08:54:13,759 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T08:54:13,759 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T08:54:13,760 Block: sro_to_mro 2021-07-15T08:54:13,760 Block: determinant_func 2021-07-15T08:54:13,760 Block: determinant 2021-07-15T08:54:13,760 Block: distance 2021-07-15T08:54:13,760 Block: distance_info 2021-07-15T08:54:13,760 Block: quicksort 2021-07-15T08:54:13,760 Block: quick_sort 2021-07-15T08:54:13,760 Block: cg_function 2021-07-15T08:54:13,760 Block: calculate_cg 2021-07-15T08:54:13,761 Block: angle 2021-07-15T08:54:13,761 Block: angle_info 2021-07-15T08:54:13,761 Block: c_stats 2021-07-15T08:54:13,761 Block: customize_stats 2021-07-15T08:54:13,761 Block: a_stats 2021-07-15T08:54:13,761 Block: all_stats 2021-07-15T08:54:13,761 Post-processing (stage 2)... 2021-07-15T08:54:13,761 Block: mro_stats 2021-07-15T08:54:13,762 Block: unknown_interface 2021-07-15T08:54:13,762 Block: sro_to_mro 2021-07-15T08:54:13,762 Block: determinant_func 2021-07-15T08:54:13,762 Block: determinant 2021-07-15T08:54:13,762 Block: distance 2021-07-15T08:54:13,762 Block: distance_info 2021-07-15T08:54:13,762 Block: quicksort 2021-07-15T08:54:13,762 Block: quick_sort 2021-07-15T08:54:13,762 Block: cg_function 2021-07-15T08:54:13,763 Block: calculate_cg 2021-07-15T08:54:13,763 Block: angle 2021-07-15T08:54:13,763 Block: angle_info 2021-07-15T08:54:13,763 Block: c_stats 2021-07-15T08:54:13,763 Block: customize_stats 2021-07-15T08:54:13,763 Block: a_stats 2021-07-15T08:54:13,763 Block: all_stats 2021-07-15T08:54:13,763 Building modules... 2021-07-15T08:54:13,763 Building module "mro_stats"... 2021-07-15T08:54:13,764 Constructing wrapper function "sro_to_mro"... 2021-07-15T08:54:13,764 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T08:54:13,764 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:13,764 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:13,764 deter_value = determinant(matrix) 2021-07-15T08:54:13,764 Constructing F90 module support for "distance"... 2021-07-15T08:54:13,764 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:13,764 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:13,764 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:13,765 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:13,765 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:13,765 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:13,765 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:13,765 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:13,765 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:13,765 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:13,765 Constructing F90 module support for "angle"... 2021-07-15T08:54:13,765 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:13,766 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:13,766 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:13,766 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:13,766 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:13,766 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:13,766 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:13,766 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:13,766 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:13,766 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:13,767 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T08:54:13,767 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T08:54:13,767 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:13,767 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:13,767 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:13,767 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:54:13,767 f2py options: [] 2021-07-15T08:54:13,767 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T08:54:13,878 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,879 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,880 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:13,880 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:13,910 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,917 appenddecl: "dimension" not implemented. 2021-07-15T08:54:13,919 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:13,920 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,174 Reading fortran codes... 2021-07-15T08:54:14,174 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T08:54:14,174 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:14,174 Post-processing... 2021-07-15T08:54:14,175 Block: neighbor_data 2021-07-15T08:54:14,175 Block: add_neighbor_features 2021-07-15T08:54:14,175 Block: determinant_func 2021-07-15T08:54:14,175 Block: determinant 2021-07-15T08:54:14,175 Block: distance 2021-07-15T08:54:14,175 Block: distance_info 2021-07-15T08:54:14,175 Block: quicksort 2021-07-15T08:54:14,176 Block: quick_sort 2021-07-15T08:54:14,176 Block: cg_function 2021-07-15T08:54:14,176 Block: calculate_cg 2021-07-15T08:54:14,176 Block: angle 2021-07-15T08:54:14,176 Block: angle_info 2021-07-15T08:54:14,176 Block: c_stats 2021-07-15T08:54:14,176 Block: customize_stats 2021-07-15T08:54:14,176 Block: a_stats 2021-07-15T08:54:14,177 Block: all_stats 2021-07-15T08:54:14,177 Post-processing (stage 2)... 2021-07-15T08:54:14,177 Block: neighbor_data 2021-07-15T08:54:14,177 Block: unknown_interface 2021-07-15T08:54:14,177 Block: add_neighbor_features 2021-07-15T08:54:14,177 Block: determinant_func 2021-07-15T08:54:14,177 Block: determinant 2021-07-15T08:54:14,177 Block: distance 2021-07-15T08:54:14,177 Block: distance_info 2021-07-15T08:54:14,178 Block: quicksort 2021-07-15T08:54:14,178 Block: quick_sort 2021-07-15T08:54:14,178 Block: cg_function 2021-07-15T08:54:14,178 Block: calculate_cg 2021-07-15T08:54:14,178 Block: angle 2021-07-15T08:54:14,178 Block: angle_info 2021-07-15T08:54:14,178 Block: c_stats 2021-07-15T08:54:14,178 Block: customize_stats 2021-07-15T08:54:14,179 Block: a_stats 2021-07-15T08:54:14,179 Block: all_stats 2021-07-15T08:54:14,179 Building modules... 2021-07-15T08:54:14,179 Building module "neighbor_data"... 2021-07-15T08:54:14,179 Constructing wrapper function "add_neighbor_features"... 2021-07-15T08:54:14,179 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T08:54:14,179 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:14,179 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:14,179 deter_value = determinant(matrix) 2021-07-15T08:54:14,180 Constructing F90 module support for "distance"... 2021-07-15T08:54:14,180 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:14,180 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:14,180 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:14,180 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:14,180 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:14,180 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:14,180 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:14,181 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:14,181 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:14,181 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:14,181 Constructing F90 module support for "angle"... 2021-07-15T08:54:14,181 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:14,181 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:14,181 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:14,181 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:14,181 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:14,181 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:14,182 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:14,182 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:14,182 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:14,182 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:14,182 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T08:54:14,182 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T08:54:14,182 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:14,183 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:14,183 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:54:14,183 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:54:14,183 f2py options: [] 2021-07-15T08:54:14,183 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T08:54:14,289 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,290 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,291 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:14,291 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:14,322 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,328 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,331 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,332 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,588 Reading fortran codes... 2021-07-15T08:54:14,588 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T08:54:14,588 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T08:54:14,589 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T08:54:14,589 analyzeline: Could not crack the use statement. 2021-07-15T08:54:14,589 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:14,589 Post-processing... 2021-07-15T08:54:14,589 Block: distance_stats 2021-07-15T08:54:14,589 Block: cn_dist 2021-07-15T08:54:14,589 Block: cutoff_distance_stats 2021-07-15T08:54:14,589 Block: determinant_func 2021-07-15T08:54:14,590 Block: determinant 2021-07-15T08:54:14,590 Block: distance 2021-07-15T08:54:14,590 Block: distance_info 2021-07-15T08:54:14,590 Block: quicksort 2021-07-15T08:54:14,590 Block: quick_sort 2021-07-15T08:54:14,590 Block: cg_function 2021-07-15T08:54:14,590 Block: calculate_cg 2021-07-15T08:54:14,590 Block: angle 2021-07-15T08:54:14,591 Block: angle_info 2021-07-15T08:54:14,591 Block: c_stats 2021-07-15T08:54:14,591 Block: customize_stats 2021-07-15T08:54:14,591 Block: a_stats 2021-07-15T08:54:14,591 Block: all_stats 2021-07-15T08:54:14,591 Post-processing (stage 2)... 2021-07-15T08:54:14,591 Block: distance_stats 2021-07-15T08:54:14,591 Block: unknown_interface 2021-07-15T08:54:14,592 Block: cn_dist 2021-07-15T08:54:14,592 Block: cutoff_distance_stats 2021-07-15T08:54:14,592 Block: determinant_func 2021-07-15T08:54:14,592 Block: determinant 2021-07-15T08:54:14,592 Block: distance 2021-07-15T08:54:14,592 Block: distance_info 2021-07-15T08:54:14,592 Block: quicksort 2021-07-15T08:54:14,592 Block: quick_sort 2021-07-15T08:54:14,592 Block: cg_function 2021-07-15T08:54:14,593 Block: calculate_cg 2021-07-15T08:54:14,593 Block: angle 2021-07-15T08:54:14,593 Block: angle_info 2021-07-15T08:54:14,593 Block: c_stats 2021-07-15T08:54:14,593 Block: customize_stats 2021-07-15T08:54:14,593 Block: a_stats 2021-07-15T08:54:14,593 Block: all_stats 2021-07-15T08:54:14,593 Building modules... 2021-07-15T08:54:14,593 Building module "distance_stats"... 2021-07-15T08:54:14,593 Constructing wrapper function "cn_dist"... 2021-07-15T08:54:14,594 cn = cn_dist(n_neighbor_list) 2021-07-15T08:54:14,594 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T08:54:14,594 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T08:54:14,594 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:14,594 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:14,594 deter_value = determinant(matrix) 2021-07-15T08:54:14,594 Constructing F90 module support for "distance"... 2021-07-15T08:54:14,594 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:14,594 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:14,595 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:14,595 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:14,595 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:14,595 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:14,595 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:14,595 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:14,595 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:14,595 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:14,595 Constructing F90 module support for "angle"... 2021-07-15T08:54:14,596 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:14,596 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:14,596 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:14,596 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:14,596 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:14,596 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:14,596 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:14,596 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:14,596 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:14,597 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:14,597 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T08:54:14,597 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T08:54:14,597 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:14,597 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:14,597 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:14,597 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:54:14,597 f2py options: [] 2021-07-15T08:54:14,597 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T08:54:14,707 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,708 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,709 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T08:54:14,709 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T08:54:14,744 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,751 appenddecl: "dimension" not implemented. 2021-07-15T08:54:14,753 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T08:54:14,754 appenddecl: "dimension" not implemented. 2021-07-15T08:54:15,021 Reading fortran codes... 2021-07-15T08:54:15,021 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T08:54:15,021 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T08:54:15,021 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T08:54:15,021 analyzeline: Could not crack the use statement. 2021-07-15T08:54:15,021 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T08:54:15,022 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T08:54:15,022 analyzeline: Could not crack the use statement. 2021-07-15T08:54:15,022 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T08:54:15,022 Post-processing... 2021-07-15T08:54:15,022 Block: distance_nn 2021-07-15T08:54:15,022 Block: distance_neighbor 2021-07-15T08:54:15,022 Block: determinant_func 2021-07-15T08:54:15,022 Block: determinant 2021-07-15T08:54:15,023 Block: distance 2021-07-15T08:54:15,023 Block: distance_info 2021-07-15T08:54:15,023 Block: quicksort 2021-07-15T08:54:15,023 Block: quick_sort 2021-07-15T08:54:15,023 Block: cg_function 2021-07-15T08:54:15,023 Block: calculate_cg 2021-07-15T08:54:15,023 Block: angle 2021-07-15T08:54:15,023 Block: angle_info 2021-07-15T08:54:15,024 Block: c_stats 2021-07-15T08:54:15,024 Block: customize_stats 2021-07-15T08:54:15,024 Block: a_stats 2021-07-15T08:54:15,024 Block: all_stats 2021-07-15T08:54:15,024 Post-processing (stage 2)... 2021-07-15T08:54:15,024 Block: distance_nn 2021-07-15T08:54:15,024 Block: unknown_interface 2021-07-15T08:54:15,024 Block: distance_neighbor 2021-07-15T08:54:15,025 Block: determinant_func 2021-07-15T08:54:15,025 Block: determinant 2021-07-15T08:54:15,025 Block: distance 2021-07-15T08:54:15,025 Block: distance_info 2021-07-15T08:54:15,025 Block: quicksort 2021-07-15T08:54:15,025 Block: quick_sort 2021-07-15T08:54:15,025 Block: cg_function 2021-07-15T08:54:15,025 Block: calculate_cg 2021-07-15T08:54:15,026 Block: angle 2021-07-15T08:54:15,026 Block: angle_info 2021-07-15T08:54:15,026 Block: c_stats 2021-07-15T08:54:15,026 Block: customize_stats 2021-07-15T08:54:15,026 Block: a_stats 2021-07-15T08:54:15,026 Block: all_stats 2021-07-15T08:54:15,026 Building modules... 2021-07-15T08:54:15,026 Building module "distance_nn"... 2021-07-15T08:54:15,027 Constructing wrapper function "distance_neighbor"... 2021-07-15T08:54:15,027 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T08:54:15,027 Constructing F90 module support for "determinant_func"... 2021-07-15T08:54:15,027 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T08:54:15,027 deter_value = determinant(matrix) 2021-07-15T08:54:15,027 Constructing F90 module support for "distance"... 2021-07-15T08:54:15,027 Constructing wrapper function "distance.distance_info"... 2021-07-15T08:54:15,027 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:15,028 Constructing F90 module support for "quicksort"... 2021-07-15T08:54:15,028 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T08:54:15,028 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T08:54:15,028 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T08:54:15,028 Constructing F90 module support for "cg_function"... 2021-07-15T08:54:15,028 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T08:54:15,028 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T08:54:15,028 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T08:54:15,029 Constructing F90 module support for "angle"... 2021-07-15T08:54:15,029 Constructing wrapper function "angle.angle_info"... 2021-07-15T08:54:15,029 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T08:54:15,029 Constructing F90 module support for "c_stats"... 2021-07-15T08:54:15,029 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T08:54:15,029 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T08:54:15,029 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T08:54:15,029 Constructing F90 module support for "a_stats"... 2021-07-15T08:54:15,030 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T08:54:15,030 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T08:54:15,030 stats = all_stats(list,[len_bn]) 2021-07-15T08:54:15,030 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T08:54:15,030 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T08:54:15,030 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:15,030 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:15,031 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:54:15,031 build_src: building npy-pkg config files 2021-07-15T08:54:15,031 creating /tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info 2021-07-15T08:54:15,031 writing /tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/PKG-INFO 2021-07-15T08:54:15,031 writing dependency_links to /tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/dependency_links.txt 2021-07-15T08:54:15,031 writing requirements to /tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/requires.txt 2021-07-15T08:54:15,031 writing top-level names to /tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/top_level.txt 2021-07-15T08:54:15,032 writing manifest file '/tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:54:15,098 reading manifest file '/tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:54:15,107 writing manifest file '/tmp/pip-pip-egg-info-63i3mwjm/amlearn.egg-info/SOURCES.txt' 2021-07-15T08:54:15,250 Source in /tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269 has version 0.3.3, which satisfies requirement amlearn==0.3.3 from https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d 2021-07-15T08:54:15,251 Removed amlearn==0.3.3 from https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d from build tracker '/tmp/pip-req-tracker-7rq1ckc2' 2021-07-15T08:54:15,256 Created temporary directory: /tmp/pip-unpack-soip5s5p 2021-07-15T08:54:15,257 Building wheels for collected packages: amlearn 2021-07-15T08:54:15,261 Created temporary directory: /tmp/pip-wheel-tg0_u6r_ 2021-07-15T08:54:15,262 Building wheel for amlearn (setup.py): started 2021-07-15T08:54:15,262 Destination directory: /tmp/pip-wheel-tg0_u6r_ 2021-07-15T08:54:15,262 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tg0_u6r_ 2021-07-15T08:54:16,965 running bdist_wheel 2021-07-15T08:54:16,967 running build 2021-07-15T08:54:16,967 running config_cc 2021-07-15T08:54:16,967 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T08:54:16,968 running config_fc 2021-07-15T08:54:16,968 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T08:54:16,968 running build_src 2021-07-15T08:54:16,969 build_src 2021-07-15T08:54:16,969 building extension "amlearn.featurize.src.utils" sources 2021-07-15T08:54:16,969 f2py options: [] 2021-07-15T08:54:16,969 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:16,969 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,063 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,064 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T08:54:17,064 f2py options: [] 2021-07-15T08:54:17,064 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,064 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,064 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,064 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T08:54:17,064 f2py options: [] 2021-07-15T08:54:17,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,065 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,065 building extension "amlearn.featurize.src.boop" sources 2021-07-15T08:54:17,065 f2py options: [] 2021-07-15T08:54:17,065 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,066 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,066 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T08:54:17,066 f2py options: [] 2021-07-15T08:54:17,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,066 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,067 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,067 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T08:54:17,067 f2py options: [] 2021-07-15T08:54:17,067 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,067 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,067 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,067 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T08:54:17,068 f2py options: [] 2021-07-15T08:54:17,068 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,068 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,068 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,068 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T08:54:17,068 f2py options: [] 2021-07-15T08:54:17,068 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T08:54:17,069 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T08:54:17,069 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T08:54:17,069 build_src: building npy-pkg config files 2021-07-15T08:54:17,070 running build_py 2021-07-15T08:54:17,073 creating build/lib.linux-armv7l-3.9 2021-07-15T08:54:17,074 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:54:17,075 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:54:17,076 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T08:54:17,078 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,079 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,081 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,083 copying scripts/regression.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,085 copying scripts/classification.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,086 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,088 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,089 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,091 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,093 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,095 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T08:54:17,098 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,099 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,101 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,104 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,107 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,110 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T08:54:17,112 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,113 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,116 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,118 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,120 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,124 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,126 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,128 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:17,131 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,132 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,135 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,137 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,139 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,140 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,142 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,144 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,146 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,148 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,151 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:54:17,152 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:54:17,154 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T08:54:17,156 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:54:17,157 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:54:17,161 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:54:17,166 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T08:54:17,169 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:17,169 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:17,172 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,173 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,175 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,178 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,179 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,181 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,183 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T08:54:17,186 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:54:17,187 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:54:17,189 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:54:17,190 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T08:54:17,192 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,194 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,196 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T08:54:17,206 running build_ext 2021-07-15T08:54:17,212 customize UnixCCompiler 2021-07-15T08:54:17,214 customize UnixCCompiler using build_ext 2021-07-15T08:54:17,327 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T08:54:17,327 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:17,328 creating /tmp/tmpat3xjy_j/home 2021-07-15T08:54:17,329 creating /tmp/tmpat3xjy_j/home/piwheels 2021-07-15T08:54:17,329 creating /tmp/tmpat3xjy_j/home/piwheels/.local 2021-07-15T08:54:17,330 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib 2021-07-15T08:54:17,330 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9 2021-07-15T08:54:17,331 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T08:54:17,332 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T08:54:17,332 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T08:54:17,333 creating /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T08:54:17,333 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:17,334 extra options: '-march=native' 2021-07-15T08:54:17,426 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T08:54:17,427 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:17,427 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:17,427 extra options: '-O3' 2021-07-15T08:54:17,520 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T08:54:17,521 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:17,521 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:17,521 extra options: '-Werror' 2021-07-15T08:54:17,614 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T08:54:17,622 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T08:54:17,631 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T08:54:17,631 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:17,632 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:17,632 extra options: '-mfpu=neon' 2021-07-15T08:54:17,730 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T08:54:17,731 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:17,731 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:17,731 extra options: '-mfpu=neon -Werror' 2021-07-15T08:54:18,115 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:54:18,116 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:18,116 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:18,116 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T08:54:18,206 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T08:54:18,206 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:18,206 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:18,207 extra options: '-mfpu=neon-vfpv4' 2021-07-15T08:54:18,303 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T08:54:18,303 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:18,304 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:18,304 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T08:54:18,707 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T08:54:18,707 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:18,708 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:18,708 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T08:54:19,119 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:54:19,120 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:19,120 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:19,120 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T08:54:19,214 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T08:54:19,214 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:19,215 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:19,215 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T08:54:19,682 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T08:54:19,682 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:19,683 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:19,683 extra options: '-march=armv8.2-a+fp16' 2021-07-15T08:54:19,774 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T08:54:19,774 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:19,775 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:19,775 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T08:54:20,237 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T08:54:20,237 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:20,237 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:20,238 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T08:54:20,325 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T08:54:20,326 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:20,326 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:20,326 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T08:54:20,756 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T08:54:20,757 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T08:54:20,757 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:54:20,757 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:54:20,757 | ^~~~~~~~~~~~~~ 2021-07-15T08:54:20,757 | vfmlal_low_f16 2021-07-15T08:54:20,757 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T08:54:20,757 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T08:54:20,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:54:20,758 | | 2021-07-15T08:54:20,758 | int 2021-07-15T08:54:20,758 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:54:20,758 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T08:54:20,758 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T08:54:20,758 | ~~~~~~~~~~~~^~~ 2021-07-15T08:54:20,758 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T08:54:20,759 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:54:20,759 | ^~~~~~~~~~~~~~~~ 2021-07-15T08:54:20,759 | vfmlslq_high_f16 2021-07-15T08:54:20,759 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T08:54:20,759 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T08:54:20,759 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T08:54:20,759 | | 2021-07-15T08:54:20,759 | int 2021-07-15T08:54:20,760 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T08:54:20,760 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T08:54:20,760 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T08:54:20,760 | ~~~~~~~~~~~~^~~ 2021-07-15T08:54:20,760 cc1: all warnings being treated as errors 2021-07-15T08:54:20,763 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:54:20,770 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T08:54:20,770 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:20,771 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:20,771 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T08:54:20,868 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T08:54:20,869 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:20,869 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T08:54:20,869 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T08:54:21,316 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpat3xjy_j/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T08:54:21,317 /tmp/ccLsyLta.s: Assembler messages: 2021-07-15T08:54:21,317 /tmp/ccLsyLta.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T08:54:21,323 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T08:54:21,329 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T08:54:21,334 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T08:54:21,340 CCompilerOpt._parse_target_tokens[1934] : skip targets (AVX512_SKX (FMA3 AVX2) VSX2 SSE42 VSX SSE2 XOP FMA4 AVX512F VSX3) not part of baseline or dispatch-able features 2021-07-15T08:54:21,346 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T08:54:21,352 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T08:54:21,406 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T08:54:21,407 customize Gnu95FCompiler 2021-07-15T08:54:21,409 Found executable /usr/bin/gfortran 2021-07-15T08:54:21,469 customize Gnu95FCompiler 2021-07-15T08:54:21,533 customize Gnu95FCompiler using build_ext 2021-07-15T08:54:21,534 building 'amlearn.featurize.src.utils' extension 2021-07-15T08:54:21,537 compiling C sources 2021-07-15T08:54:21,537 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T08:54:21,538 creating build/temp.linux-armv7l-3.9/build 2021-07-15T08:54:21,538 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:54:21,539 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:54:21,540 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:21,541 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:21,542 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T08:54:21,542 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T08:54:21,543 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T08:54:21,544 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:21,545 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:21,545 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:54:21,568 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T08:54:21,970 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:54:21,971 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:54:21,971 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:54:21,971 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:54:21,971 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T08:54:21,972 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:54:21,972 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:54:21,972 | ^~~~~~~ 2021-07-15T08:54:21,974 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T08:54:21,974 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T08:54:21,974 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T08:54:21,974 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T08:54:21,975 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T08:54:21,975 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T08:54:21,975 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T08:54:21,975 | ^~~~~~~ 2021-07-15T08:54:22,044 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T08:54:22,044 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T08:54:22,045 | ^~~~~~~~~ 2021-07-15T08:54:23,205 compiling Fortran 90 module sources 2021-07-15T08:54:23,206 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T08:54:23,206 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T08:54:23,207 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T08:54:23,208 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:54:23,208 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:54:23,208 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T08:54:23,209 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T08:54:23,209 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T08:54:23,210 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T08:54:23,291 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T08:54:23,291 259 | REAL(16) :: std 2021-07-15T08:54:23,291 | 1 2021-07-15T08:54:23,291 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T08:54:23,292 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T08:54:23,293 285 | std = std + (list(atom) - mean)**2 2021-07-15T08:54:23,293 | 1 2021-07-15T08:54:23,293 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T08:54:23,299 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T08:54:23,300 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T08:54:23,300 Platform : 2021-07-15T08:54:23,300 Architecture: armhf 2021-07-15T08:54:23,301 Compiler : gcc 2021-07-15T08:54:23,301 CPU baseline : 2021-07-15T08:54:23,301 Requested : 'min' 2021-07-15T08:54:23,301 Enabled : none 2021-07-15T08:54:23,301 Flags : none 2021-07-15T08:54:23,301 Extra checks: none 2021-07-15T08:54:23,302 CPU dispatch : 2021-07-15T08:54:23,302 Requested : 'max -xop -fma4' 2021-07-15T08:54:23,302 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T08:54:23,302 Generated : none 2021-07-15T08:54:23,302 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T08:54:23,474 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T08:54:23,475 ERROR: Failed building wheel for amlearn 2021-07-15T08:54:23,476 Running setup.py clean for amlearn 2021-07-15T08:54:23,476 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xwv7o5tx/amlearn_923f770a87374263a31ab6223eda4269/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T08:54:25,149 running clean 2021-07-15T08:54:25,150 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:54:25,164 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T08:54:25,187 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T08:54:25,188 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T08:54:25,319 Failed to build amlearn 2021-07-15T08:54:25,320 ERROR: Failed to build one or more wheels 2021-07-15T08:54:25,320 Exception information: 2021-07-15T08:54:25,320 Traceback (most recent call last): 2021-07-15T08:54:25,320 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T08:54:25,320 status = self.run(options, args) 2021-07-15T08:54:25,320 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T08:54:25,320 return func(self, options, args) 2021-07-15T08:54:25,320 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T08:54:25,320 raise CommandError( 2021-07-15T08:54:25,320 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T08:54:25,323 Removed build tracker: '/tmp/pip-req-tracker-7rq1ckc2'