2021-07-15T09:52:20,664 Created temporary directory: /tmp/pip-ephem-wheel-cache-yaqoxr48 2021-07-15T09:52:20,667 Created temporary directory: /tmp/pip-req-tracker-zcx6gfww 2021-07-15T09:52:20,667 Initialized build tracking at /tmp/pip-req-tracker-zcx6gfww 2021-07-15T09:52:20,667 Created build tracker: /tmp/pip-req-tracker-zcx6gfww 2021-07-15T09:52:20,667 Entered build tracker: /tmp/pip-req-tracker-zcx6gfww 2021-07-15T09:52:20,668 Created temporary directory: /tmp/pip-wheel-5htrcrl6 2021-07-15T09:52:20,694 1 location(s) to search for versions of amlearn: 2021-07-15T09:52:20,694 * https://pypi.org/simple/amlearn/ 2021-07-15T09:52:20,695 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2021-07-15T09:52:20,695 Getting page https://pypi.org/simple/amlearn/ 2021-07-15T09:52:20,697 Found index url https://pypi.org/simple 2021-07-15T09:52:20,861 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz#sha256=3feb0259f07d515171eb3f5dbcd60a40a90a2c04b9114be537d617d1df4addee (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2021-07-15T09:52:20,862 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz#sha256=20a099bc7da2324c247c1f5bd4c61cbf207ad59248a0c161fac0a08d11112f36 (from https://pypi.org/simple/amlearn/), version: 0.1.0 2021-07-15T09:52:20,862 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz#sha256=02a6393944cbf8a784db0d554708f37a035c9203518531e46e870bc1453cef7f (from https://pypi.org/simple/amlearn/), version: 0.2.0 2021-07-15T09:52:20,862 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz#sha256=036b1f5f9152145124dc681a3345d518f374c1a8785f602addf4bc27494917f3 (from https://pypi.org/simple/amlearn/), version: 0.2.1 2021-07-15T09:52:20,863 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz#sha256=1ad6512e2146f4e145e097463f4575427820335c59fca3e6bfb41806c786799d (from https://pypi.org/simple/amlearn/), version: 0.2.2 2021-07-15T09:52:20,863 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz#sha256=5d1ffea09b0267bdfef9ce1d7fcb8340ca8ece762a08885f8aa3be17281aa2b5 (from https://pypi.org/simple/amlearn/), version: 0.2.3 2021-07-15T09:52:20,863 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz#sha256=22907a9b4dd8df1858b2336d5b5a163fba110e8ef9d2eb28bba7b28c5133fee2 (from https://pypi.org/simple/amlearn/), version: 0.2.4 2021-07-15T09:52:20,864 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz#sha256=da9d07b7f81cc8aa7114bb9fc490c58fefd304dec5478a29816104b8cc3c7e6c (from https://pypi.org/simple/amlearn/), version: 0.2.5 2021-07-15T09:52:20,864 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz#sha256=e99afe2a58a6f749d7fdce86fb760b9e73911e2966ab5f52d3d6f42fadf887ba (from https://pypi.org/simple/amlearn/), version: 0.2.6 2021-07-15T09:52:20,864 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz#sha256=c0fa0da13a6313d767f9f752ccdad3ab97fe4adba1ad74a7f1a138093796d1a2 (from https://pypi.org/simple/amlearn/), version: 0.3.1 2021-07-15T09:52:20,864 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz#sha256=752577af6877785f9b335816d6f6f4b08dcd9755c4170b619bb10d9666304a7e (from https://pypi.org/simple/amlearn/), version: 0.3.2 2021-07-15T09:52:20,865 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz#sha256=f180e4f9cbcc0839eea4c86823b319ffd4e793b63997712fe99c9f163ca94e9d (from https://pypi.org/simple/amlearn/), version: 0.3.3 2021-07-15T09:52:20,865 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 (from https://pypi.org/simple/amlearn/), version: 0.3.4 2021-07-15T09:52:20,865 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2021-07-15T09:52:20,884 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2021-07-15T09:52:20,903 Collecting amlearn==0.3.4 2021-07-15T09:52:20,904 Created temporary directory: /tmp/pip-unpack-7ilyj621 2021-07-15T09:52:21,083 Downloading amlearn-0.3.4.tar.gz (86 kB) 2021-07-15T09:52:21,254 Added amlearn==0.3.4 from https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 to build tracker '/tmp/pip-req-tracker-zcx6gfww' 2021-07-15T09:52:21,255 Running setup.py (path:/tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/setup.py) egg_info for package amlearn 2021-07-15T09:52:21,256 Created temporary directory: /tmp/pip-pip-egg-info-rlsy4xsg 2021-07-15T09:52:21,256 Running command python setup.py egg_info 2021-07-15T09:52:22,727 running egg_info 2021-07-15T09:52:22,729 running build_src 2021-07-15T09:52:22,731 build_src 2021-07-15T09:52:22,731 building extension "amlearn.featurize.src.utils" sources 2021-07-15T09:52:22,732 f2py options: [] 2021-07-15T09:52:22,732 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c 2021-07-15T09:52:22,732 creating build 2021-07-15T09:52:22,732 creating build/src.linux-armv7l-3.9 2021-07-15T09:52:22,733 creating build/src.linux-armv7l-3.9/amlearn 2021-07-15T09:52:22,734 creating build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:22,734 creating build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:23,042 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,044 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,044 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:23,045 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:23,085 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,097 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,100 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,101 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,314 Reading fortran codes... 2021-07-15T09:52:23,314 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:23,315 Post-processing... 2021-07-15T09:52:23,315 Block: utils 2021-07-15T09:52:23,315 Block: determinant_func 2021-07-15T09:52:23,315 Block: determinant 2021-07-15T09:52:23,315 Block: distance 2021-07-15T09:52:23,315 Block: distance_info 2021-07-15T09:52:23,315 Block: quicksort 2021-07-15T09:52:23,315 Block: quick_sort 2021-07-15T09:52:23,316 Block: cg_function 2021-07-15T09:52:23,316 Block: calculate_cg 2021-07-15T09:52:23,316 Block: angle 2021-07-15T09:52:23,316 Block: angle_info 2021-07-15T09:52:23,316 Block: c_stats 2021-07-15T09:52:23,316 Block: customize_stats 2021-07-15T09:52:23,316 Block: a_stats 2021-07-15T09:52:23,316 Block: all_stats 2021-07-15T09:52:23,316 Post-processing (stage 2)... 2021-07-15T09:52:23,317 Block: utils 2021-07-15T09:52:23,317 Block: unknown_interface 2021-07-15T09:52:23,317 Block: determinant_func 2021-07-15T09:52:23,317 Block: determinant 2021-07-15T09:52:23,317 Block: distance 2021-07-15T09:52:23,317 Block: distance_info 2021-07-15T09:52:23,317 Block: quicksort 2021-07-15T09:52:23,318 Block: quick_sort 2021-07-15T09:52:23,318 Block: cg_function 2021-07-15T09:52:23,318 Block: calculate_cg 2021-07-15T09:52:23,318 Block: angle 2021-07-15T09:52:23,318 Block: angle_info 2021-07-15T09:52:23,318 Block: c_stats 2021-07-15T09:52:23,318 Block: customize_stats 2021-07-15T09:52:23,318 Block: a_stats 2021-07-15T09:52:23,318 Block: all_stats 2021-07-15T09:52:23,319 Building modules... 2021-07-15T09:52:23,319 Building module "utils"... 2021-07-15T09:52:23,319 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:23,319 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:23,319 deter_value = determinant(matrix) 2021-07-15T09:52:23,319 Constructing F90 module support for "distance"... 2021-07-15T09:52:23,319 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:23,319 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:23,320 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:23,320 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:23,320 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:23,320 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:23,320 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:23,320 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:23,321 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:23,321 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:23,321 Constructing F90 module support for "angle"... 2021-07-15T09:52:23,321 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:23,321 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:23,321 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:23,321 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:23,321 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:23,321 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:23,321 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:23,322 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:23,322 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:23,322 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:23,322 Wrote C/API module "utils" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c" 2021-07-15T09:52:23,322 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90" 2021-07-15T09:52:23,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:23,322 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:23,322 creating build/src.linux-armv7l-3.9/build 2021-07-15T09:52:23,322 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T09:52:23,323 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T09:52:23,323 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:23,323 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:23,323 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:23,327 copying /home/piwheels/.local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:23,330 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T09:52:23,330 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T09:52:23,330 f2py options: [] 2021-07-15T09:52:23,330 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c 2021-07-15T09:52:23,526 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,527 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,528 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:23,528 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:23,578 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,585 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,588 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:23,588 appenddecl: "dimension" not implemented. 2021-07-15T09:52:23,889 Reading fortran codes... 2021-07-15T09:52:23,889 Reading file 'amlearn/featurize/src/voronoi_nn.f90' (format:free) 2021-07-15T09:52:23,889 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T09:52:23,889 Line #39 in amlearn/featurize/src/voronoi_nn.f90:" use :: distance " 2021-07-15T09:52:23,890 analyzeline: Could not crack the use statement. 2021-07-15T09:52:23,890 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:23,890 Post-processing... 2021-07-15T09:52:23,890 Block: voronoi_nn 2021-07-15T09:52:23,890 Block: determinant 2021-07-15T09:52:23,890 Block: voronoi 2021-07-15T09:52:23,890 Block: determinant_func 2021-07-15T09:52:23,890 Block: determinant 2021-07-15T09:52:23,891 Block: distance 2021-07-15T09:52:23,891 Block: distance_info 2021-07-15T09:52:23,891 Block: quicksort 2021-07-15T09:52:23,891 Block: quick_sort 2021-07-15T09:52:23,891 Block: cg_function 2021-07-15T09:52:23,891 Block: calculate_cg 2021-07-15T09:52:23,891 Block: angle 2021-07-15T09:52:23,891 Block: angle_info 2021-07-15T09:52:23,891 Block: c_stats 2021-07-15T09:52:23,892 Block: customize_stats 2021-07-15T09:52:23,892 Block: a_stats 2021-07-15T09:52:23,892 Block: all_stats 2021-07-15T09:52:23,892 Post-processing (stage 2)... 2021-07-15T09:52:23,892 Block: voronoi_nn 2021-07-15T09:52:23,892 Block: unknown_interface 2021-07-15T09:52:23,892 Block: determinant 2021-07-15T09:52:23,892 Block: voronoi 2021-07-15T09:52:23,892 Block: determinant_func 2021-07-15T09:52:23,893 Block: determinant 2021-07-15T09:52:23,893 Block: distance 2021-07-15T09:52:23,893 Block: distance_info 2021-07-15T09:52:23,893 Block: quicksort 2021-07-15T09:52:23,893 Block: quick_sort 2021-07-15T09:52:23,893 Block: cg_function 2021-07-15T09:52:23,893 Block: calculate_cg 2021-07-15T09:52:23,893 Block: angle 2021-07-15T09:52:23,893 Block: angle_info 2021-07-15T09:52:23,894 Block: c_stats 2021-07-15T09:52:23,894 Block: customize_stats 2021-07-15T09:52:23,894 Block: a_stats 2021-07-15T09:52:23,894 Block: all_stats 2021-07-15T09:52:23,894 Building modules... 2021-07-15T09:52:23,894 Building module "voronoi_nn"... 2021-07-15T09:52:23,894 Constructing wrapper function "determinant"... 2021-07-15T09:52:23,894 deter_value = determinant(face) 2021-07-15T09:52:23,894 Constructing wrapper function "voronoi"... 2021-07-15T09:52:23,895 n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists = voronoi(atom_type,atom_coords,cutoff,allow_neighbor_limit,small_face_thres,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_area_lists,neighbor_vol_lists,neighbor_distance_lists,neighbor_edge_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T09:52:23,895 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:23,895 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:23,895 deter_value = determinant(matrix) 2021-07-15T09:52:23,895 Constructing F90 module support for "distance"... 2021-07-15T09:52:23,895 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:23,895 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:23,895 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:23,896 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:23,896 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:23,896 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:23,896 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:23,896 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:23,896 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:23,896 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:23,896 Constructing F90 module support for "angle"... 2021-07-15T09:52:23,896 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:23,897 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:23,897 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:23,897 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:23,897 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:23,897 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:23,897 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:23,897 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:23,897 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:23,897 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:23,898 Wrote C/API module "voronoi_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nnmodule.c" 2021-07-15T09:52:23,898 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90" 2021-07-15T09:52:23,898 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:23,898 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:23,898 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T09:52:23,898 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T09:52:23,898 f2py options: [] 2021-07-15T09:52:23,898 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c 2021-07-15T09:52:24,109 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:24,111 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:24,111 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:24,112 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:24,153 sortvarnames: failed to compute dependencies because of cyclic dependencies between target_voro_idx, voronoi_index_list, motif_one_hot, n_voro, n_target, n_atoms 2021-07-15T09:52:24,214 appenddecl: "dimension" not implemented. 2021-07-15T09:52:24,226 appenddecl: "dimension" not implemented. 2021-07-15T09:52:24,230 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:24,231 appenddecl: "dimension" not implemented. 2021-07-15T09:52:24,869 Reading fortran codes... 2021-07-15T09:52:24,870 Reading file 'amlearn/featurize/src/voronoi_stats.f90' (format:free) 2021-07-15T09:52:24,870 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T09:52:24,870 Line #205 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T09:52:24,870 analyzeline: Could not crack the use statement. 2021-07-15T09:52:24,870 {'before': '', 'this': 'use', 'after': ':: a_stats, only: all_stats '} 2021-07-15T09:52:24,870 Line #230 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only: all_stats " 2021-07-15T09:52:24,870 analyzeline: Could not crack the use statement. 2021-07-15T09:52:24,871 {'before': '', 'this': 'use', 'after': ':: a_stats, only : all_stats '} 2021-07-15T09:52:24,871 Line #318 in amlearn/featurize/src/voronoi_stats.f90:" use :: a_stats, only : all_stats " 2021-07-15T09:52:24,871 analyzeline: Could not crack the use statement. 2021-07-15T09:52:24,871 {'before': '', 'this': 'use', 'after': ':: c_stats, only : customize_stats '} 2021-07-15T09:52:24,871 Line #320 in amlearn/featurize/src/voronoi_stats.f90:" use :: c_stats, only : customize_stats " 2021-07-15T09:52:24,871 analyzeline: Could not crack the use statement. 2021-07-15T09:52:24,871 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:24,871 Post-processing... 2021-07-15T09:52:24,871 Block: voronoi_stats 2021-07-15T09:52:24,872 Block: voronoi_index 2021-07-15T09:52:24,872 Block: i_fold_symmetry 2021-07-15T09:52:24,872 Block: line_percent 2021-07-15T09:52:24,872 {} 2021-07-15T09:52:24,872 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T09:52:24,872 vars2fortran: No typespec for argument "n_voro". 2021-07-15T09:52:24,872 {} 2021-07-15T09:52:24,872 In: :voronoi_stats:amlearn/featurize/src/voronoi_stats.f90:character_motif 2021-07-15T09:52:24,873 vars2fortran: No typespec for argument "n_target". 2021-07-15T09:52:24,873 Block: character_motif 2021-07-15T09:52:24,873 Block: area_wt_i_fold_symmetry 2021-07-15T09:52:24,873 Block: vol_wt_i_fold_symmetry 2021-07-15T09:52:24,873 Block: voronoi_area_stats 2021-07-15T09:52:24,873 Block: voronoi_area_stats_separate 2021-07-15T09:52:24,873 Block: voronoi_vol_stats 2021-07-15T09:52:24,873 Block: voronoi_vol_stats_separate 2021-07-15T09:52:24,873 Block: voronoi_distance_stats 2021-07-15T09:52:24,874 Block: determinant_func 2021-07-15T09:52:24,874 Block: determinant 2021-07-15T09:52:24,874 Block: distance 2021-07-15T09:52:24,874 Block: distance_info 2021-07-15T09:52:24,874 Block: quicksort 2021-07-15T09:52:24,874 Block: quick_sort 2021-07-15T09:52:24,874 Block: cg_function 2021-07-15T09:52:24,874 Block: calculate_cg 2021-07-15T09:52:24,874 Block: angle 2021-07-15T09:52:24,875 Block: angle_info 2021-07-15T09:52:24,875 Block: c_stats 2021-07-15T09:52:24,875 Block: customize_stats 2021-07-15T09:52:24,875 Block: a_stats 2021-07-15T09:52:24,875 Block: all_stats 2021-07-15T09:52:24,875 Post-processing (stage 2)... 2021-07-15T09:52:24,875 Block: voronoi_stats 2021-07-15T09:52:24,875 Block: unknown_interface 2021-07-15T09:52:24,875 Block: voronoi_index 2021-07-15T09:52:24,876 Block: i_fold_symmetry 2021-07-15T09:52:24,876 Block: line_percent 2021-07-15T09:52:24,876 Block: character_motif 2021-07-15T09:52:24,876 Block: area_wt_i_fold_symmetry 2021-07-15T09:52:24,876 Block: vol_wt_i_fold_symmetry 2021-07-15T09:52:24,876 Block: voronoi_area_stats 2021-07-15T09:52:24,876 Block: voronoi_area_stats_separate 2021-07-15T09:52:24,876 Block: voronoi_vol_stats 2021-07-15T09:52:24,876 Block: voronoi_vol_stats_separate 2021-07-15T09:52:24,877 Block: voronoi_distance_stats 2021-07-15T09:52:24,877 Block: determinant_func 2021-07-15T09:52:24,877 Block: determinant 2021-07-15T09:52:24,877 Block: distance 2021-07-15T09:52:24,877 Block: distance_info 2021-07-15T09:52:24,877 Block: quicksort 2021-07-15T09:52:24,877 Block: quick_sort 2021-07-15T09:52:24,877 Block: cg_function 2021-07-15T09:52:24,878 Block: calculate_cg 2021-07-15T09:52:24,878 Block: angle 2021-07-15T09:52:24,878 Block: angle_info 2021-07-15T09:52:24,878 Block: c_stats 2021-07-15T09:52:24,878 Block: customize_stats 2021-07-15T09:52:24,878 Block: a_stats 2021-07-15T09:52:24,878 Block: all_stats 2021-07-15T09:52:24,878 Building modules... 2021-07-15T09:52:24,878 Building module "voronoi_stats"... 2021-07-15T09:52:24,878 Constructing wrapper function "voronoi_index"... 2021-07-15T09:52:24,879 voronoi_index_list = voronoi_index(voronoi_index_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,879 Constructing wrapper function "i_fold_symmetry"... 2021-07-15T09:52:24,879 i_symm_list = i_fold_symmetry(i_symm_list,n_neighbor_list,neighbor_edge_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,879 Constructing wrapper function "line_percent"... 2021-07-15T09:52:24,879 percent_list = line_percent(percent_list,value_list,[n_atoms,n_values]) 2021-07-15T09:52:24,879 Constructing wrapper function "character_motif"... 2021-07-15T09:52:24,879 motif_one_hot = character_motif(motif_one_hot,voronoi_index_list,edge_min,target_voro_idx,frank_kasper,[n_atoms,n_voro,n_target]) 2021-07-15T09:52:24,879 Constructing wrapper function "area_wt_i_fold_symmetry"... 2021-07-15T09:52:24,879 area_wt_i_symm_list = area_wt_i_fold_symmetry(area_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,880 Constructing wrapper function "vol_wt_i_fold_symmetry"... 2021-07-15T09:52:24,880 vol_wt_i_symm_list = vol_wt_i_fold_symmetry(vol_wt_i_symm_list,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,880 Constructing wrapper function "voronoi_area_stats"... 2021-07-15T09:52:24,880 area_stats = voronoi_area_stats(area_stats,n_neighbor_list,neighbor_area_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,880 Constructing wrapper function "voronoi_area_stats_separate"... 2021-07-15T09:52:24,880 area_stats_separate = voronoi_area_stats_separate(area_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_area_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,880 Constructing wrapper function "voronoi_vol_stats"... 2021-07-15T09:52:24,880 vol_stats = voronoi_vol_stats(vol_stats,n_neighbor_list,neighbor_vol_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,880 Constructing wrapper function "voronoi_vol_stats_separate"... 2021-07-15T09:52:24,881 vol_stats_separate = voronoi_vol_stats_separate(vol_stats_separate,n_neighbor_list,neighbor_edge_lists,neighbor_vol_lists,edge_min,edge_max,include_beyond_edge_max,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,881 Constructing wrapper function "voronoi_distance_stats"... 2021-07-15T09:52:24,881 distance_stats = voronoi_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,neighbor_num_limit]) 2021-07-15T09:52:24,881 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:24,881 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:24,881 deter_value = determinant(matrix) 2021-07-15T09:52:24,881 Constructing F90 module support for "distance"... 2021-07-15T09:52:24,881 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:24,881 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:24,882 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:24,882 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:24,882 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:24,882 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:24,882 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:24,882 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:24,882 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:24,882 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:24,882 Constructing F90 module support for "angle"... 2021-07-15T09:52:24,883 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:24,883 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:24,883 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:24,883 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:24,883 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:24,883 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:24,883 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:24,883 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:24,883 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:24,884 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:24,884 Wrote C/API module "voronoi_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_statsmodule.c" 2021-07-15T09:52:24,884 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90" 2021-07-15T09:52:24,884 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:24,884 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:24,884 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:24,884 building extension "amlearn.featurize.src.boop" sources 2021-07-15T09:52:24,884 f2py options: [] 2021-07-15T09:52:24,884 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c 2021-07-15T09:52:25,234 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,235 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,236 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:25,236 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:25,284 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,291 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,293 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,294 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,567 Reading fortran codes... 2021-07-15T09:52:25,567 Reading file 'amlearn/featurize/src/boop.f90' (format:free) 2021-07-15T09:52:25,567 {'before': '', 'this': 'use', 'after': ':: angle '} 2021-07-15T09:52:25,567 Line #9 in amlearn/featurize/src/boop.f90:" use :: angle " 2021-07-15T09:52:25,567 analyzeline: Could not crack the use statement. 2021-07-15T09:52:25,568 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:25,568 Post-processing... 2021-07-15T09:52:25,568 Block: boop 2021-07-15T09:52:25,568 Block: calculate_boop 2021-07-15T09:52:25,568 Block: determinant_func 2021-07-15T09:52:25,568 Block: determinant 2021-07-15T09:52:25,568 Block: distance 2021-07-15T09:52:25,568 Block: distance_info 2021-07-15T09:52:25,569 Block: quicksort 2021-07-15T09:52:25,569 Block: quick_sort 2021-07-15T09:52:25,569 Block: cg_function 2021-07-15T09:52:25,569 Block: calculate_cg 2021-07-15T09:52:25,569 Block: angle 2021-07-15T09:52:25,569 Block: angle_info 2021-07-15T09:52:25,569 Block: c_stats 2021-07-15T09:52:25,569 Block: customize_stats 2021-07-15T09:52:25,569 Block: a_stats 2021-07-15T09:52:25,570 Block: all_stats 2021-07-15T09:52:25,570 Post-processing (stage 2)... 2021-07-15T09:52:25,570 Block: boop 2021-07-15T09:52:25,570 Block: unknown_interface 2021-07-15T09:52:25,570 Block: calculate_boop 2021-07-15T09:52:25,570 Block: determinant_func 2021-07-15T09:52:25,570 Block: determinant 2021-07-15T09:52:25,570 Block: distance 2021-07-15T09:52:25,571 Block: distance_info 2021-07-15T09:52:25,571 Block: quicksort 2021-07-15T09:52:25,571 Block: quick_sort 2021-07-15T09:52:25,571 Block: cg_function 2021-07-15T09:52:25,571 Block: calculate_cg 2021-07-15T09:52:25,571 Block: angle 2021-07-15T09:52:25,571 Block: angle_info 2021-07-15T09:52:25,571 Block: c_stats 2021-07-15T09:52:25,571 Block: customize_stats 2021-07-15T09:52:25,571 Block: a_stats 2021-07-15T09:52:25,572 Block: all_stats 2021-07-15T09:52:25,572 Building modules... 2021-07-15T09:52:25,572 Building module "boop"... 2021-07-15T09:52:25,572 Constructing wrapper function "calculate_boop"... 2021-07-15T09:52:25,572 ql,wlbar,coarse_ql,coarse_wlbar = calculate_boop(atom_coords,pbc,bds,n_neighbor_list,neighbor_lists,low_order,higher_order,coarse_lower_order,coarse_higher_order,ql,wlbar,coarse_ql,coarse_wlbar,[n_atoms,n_neighbor_limit]) 2021-07-15T09:52:25,572 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:25,572 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:25,572 deter_value = determinant(matrix) 2021-07-15T09:52:25,572 Constructing F90 module support for "distance"... 2021-07-15T09:52:25,573 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:25,573 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:25,573 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:25,573 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:25,573 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:25,573 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:25,573 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:25,573 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:25,573 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:25,573 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:25,574 Constructing F90 module support for "angle"... 2021-07-15T09:52:25,574 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:25,574 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:25,574 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:25,574 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:25,574 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:25,574 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:25,574 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:25,574 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:25,575 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:25,575 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:25,575 Wrote C/API module "boop" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/boopmodule.c" 2021-07-15T09:52:25,575 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90" 2021-07-15T09:52:25,575 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:25,575 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:25,575 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T09:52:25,575 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T09:52:25,575 f2py options: [] 2021-07-15T09:52:25,576 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c 2021-07-15T09:52:25,673 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,674 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,675 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:25,675 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:25,717 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,729 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,733 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:25,734 appenddecl: "dimension" not implemented. 2021-07-15T09:52:25,981 Reading fortran codes... 2021-07-15T09:52:25,981 Reading file 'amlearn/featurize/src/mro_stats.f90' (format:free) 2021-07-15T09:52:25,981 {'before': '', 'this': 'use', 'after': ':: c_stats '} 2021-07-15T09:52:25,982 Line #5 in amlearn/featurize/src/mro_stats.f90:" use :: c_stats " 2021-07-15T09:52:25,982 analyzeline: Could not crack the use statement. 2021-07-15T09:52:25,982 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:25,982 Post-processing... 2021-07-15T09:52:25,982 Block: mro_stats 2021-07-15T09:52:25,982 {'attrspec': ['intent(in)']} 2021-07-15T09:52:25,982 In: :mro_stats:amlearn/featurize/src/mro_stats.f90:sro_to_mro 2021-07-15T09:52:25,982 vars2fortran: No typespec for argument "n_neighbor_limit". 2021-07-15T09:52:25,983 Block: sro_to_mro 2021-07-15T09:52:25,983 Block: determinant_func 2021-07-15T09:52:25,983 Block: determinant 2021-07-15T09:52:25,983 Block: distance 2021-07-15T09:52:25,983 Block: distance_info 2021-07-15T09:52:25,983 Block: quicksort 2021-07-15T09:52:25,983 Block: quick_sort 2021-07-15T09:52:25,983 Block: cg_function 2021-07-15T09:52:25,983 Block: calculate_cg 2021-07-15T09:52:25,984 Block: angle 2021-07-15T09:52:25,984 Block: angle_info 2021-07-15T09:52:25,984 Block: c_stats 2021-07-15T09:52:25,984 Block: customize_stats 2021-07-15T09:52:25,984 Block: a_stats 2021-07-15T09:52:25,984 Block: all_stats 2021-07-15T09:52:25,984 Post-processing (stage 2)... 2021-07-15T09:52:25,984 Block: mro_stats 2021-07-15T09:52:25,985 Block: unknown_interface 2021-07-15T09:52:25,985 Block: sro_to_mro 2021-07-15T09:52:25,985 Block: determinant_func 2021-07-15T09:52:25,985 Block: determinant 2021-07-15T09:52:25,985 Block: distance 2021-07-15T09:52:25,985 Block: distance_info 2021-07-15T09:52:25,985 Block: quicksort 2021-07-15T09:52:25,985 Block: quick_sort 2021-07-15T09:52:25,985 Block: cg_function 2021-07-15T09:52:25,986 Block: calculate_cg 2021-07-15T09:52:25,986 Block: angle 2021-07-15T09:52:25,986 Block: angle_info 2021-07-15T09:52:25,986 Block: c_stats 2021-07-15T09:52:25,986 Block: customize_stats 2021-07-15T09:52:25,986 Block: a_stats 2021-07-15T09:52:25,986 Block: all_stats 2021-07-15T09:52:25,986 Building modules... 2021-07-15T09:52:25,986 Building module "mro_stats"... 2021-07-15T09:52:25,986 Constructing wrapper function "sro_to_mro"... 2021-07-15T09:52:25,987 mro_feature = sro_to_mro(sro_feature,n_neighbor_list,neighbor_lists,stats_types,mro_feature,[n_atoms,n_neighbor_limit,sum_stats_types]) 2021-07-15T09:52:25,987 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:25,987 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:25,987 deter_value = determinant(matrix) 2021-07-15T09:52:25,987 Constructing F90 module support for "distance"... 2021-07-15T09:52:25,987 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:25,987 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:25,987 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:25,988 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:25,988 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:25,988 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:25,988 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:25,988 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:25,988 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:25,988 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:25,988 Constructing F90 module support for "angle"... 2021-07-15T09:52:25,988 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:25,989 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:25,989 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:25,989 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:25,989 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:25,989 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:25,989 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:25,989 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:25,989 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:25,989 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:25,990 Wrote C/API module "mro_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_statsmodule.c" 2021-07-15T09:52:25,990 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90" 2021-07-15T09:52:25,990 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:25,990 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:25,990 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:25,990 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T09:52:25,990 f2py options: [] 2021-07-15T09:52:25,990 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c 2021-07-15T09:52:26,098 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,100 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,100 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:26,100 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:26,131 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,138 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,140 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,141 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,390 Reading fortran codes... 2021-07-15T09:52:26,391 Reading file 'amlearn/featurize/src/neighbor_data.f90' (format:free) 2021-07-15T09:52:26,391 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:26,391 Post-processing... 2021-07-15T09:52:26,391 Block: neighbor_data 2021-07-15T09:52:26,391 Block: add_neighbor_features 2021-07-15T09:52:26,391 Block: determinant_func 2021-07-15T09:52:26,391 Block: determinant 2021-07-15T09:52:26,391 Block: distance 2021-07-15T09:52:26,392 Block: distance_info 2021-07-15T09:52:26,392 Block: quicksort 2021-07-15T09:52:26,392 Block: quick_sort 2021-07-15T09:52:26,392 Block: cg_function 2021-07-15T09:52:26,392 Block: calculate_cg 2021-07-15T09:52:26,392 Block: angle 2021-07-15T09:52:26,392 Block: angle_info 2021-07-15T09:52:26,392 Block: c_stats 2021-07-15T09:52:26,393 Block: customize_stats 2021-07-15T09:52:26,393 Block: a_stats 2021-07-15T09:52:26,393 Block: all_stats 2021-07-15T09:52:26,393 Post-processing (stage 2)... 2021-07-15T09:52:26,393 Block: neighbor_data 2021-07-15T09:52:26,393 Block: unknown_interface 2021-07-15T09:52:26,393 Block: add_neighbor_features 2021-07-15T09:52:26,393 Block: determinant_func 2021-07-15T09:52:26,393 Block: determinant 2021-07-15T09:52:26,394 Block: distance 2021-07-15T09:52:26,394 Block: distance_info 2021-07-15T09:52:26,394 Block: quicksort 2021-07-15T09:52:26,394 Block: quick_sort 2021-07-15T09:52:26,394 Block: cg_function 2021-07-15T09:52:26,394 Block: calculate_cg 2021-07-15T09:52:26,394 Block: angle 2021-07-15T09:52:26,394 Block: angle_info 2021-07-15T09:52:26,394 Block: c_stats 2021-07-15T09:52:26,395 Block: customize_stats 2021-07-15T09:52:26,395 Block: a_stats 2021-07-15T09:52:26,395 Block: all_stats 2021-07-15T09:52:26,395 Building modules... 2021-07-15T09:52:26,395 Building module "neighbor_data"... 2021-07-15T09:52:26,395 Constructing wrapper function "add_neighbor_features"... 2021-07-15T09:52:26,395 features_new = add_neighbor_features(pred_last,neigh_voro,probs,features_new,[n_atoms,n_neighs,n_probs,n_features]) 2021-07-15T09:52:26,395 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:26,395 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:26,395 deter_value = determinant(matrix) 2021-07-15T09:52:26,396 Constructing F90 module support for "distance"... 2021-07-15T09:52:26,396 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:26,396 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:26,396 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:26,396 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:26,396 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:26,396 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:26,396 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:26,397 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:26,397 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:26,397 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:26,397 Constructing F90 module support for "angle"... 2021-07-15T09:52:26,397 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:26,397 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:26,397 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:26,397 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:26,397 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:26,398 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:26,398 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:26,398 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:26,398 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:26,398 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:26,398 Wrote C/API module "neighbor_data" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_datamodule.c" 2021-07-15T09:52:26,398 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90" 2021-07-15T09:52:26,398 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:26,399 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:26,399 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T09:52:26,399 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T09:52:26,399 f2py options: [] 2021-07-15T09:52:26,399 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c 2021-07-15T09:52:26,502 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,504 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,505 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:26,505 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:26,535 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,542 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,544 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,545 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,798 Reading fortran codes... 2021-07-15T09:52:26,798 Reading file 'amlearn/featurize/src/distance_stats.f90' (format:free) 2021-07-15T09:52:26,798 {'before': '', 'this': 'use', 'after': ':: a_stats '} 2021-07-15T09:52:26,798 Line #17 in amlearn/featurize/src/distance_stats.f90:" use :: a_stats " 2021-07-15T09:52:26,798 analyzeline: Could not crack the use statement. 2021-07-15T09:52:26,798 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:26,799 Post-processing... 2021-07-15T09:52:26,799 Block: distance_stats 2021-07-15T09:52:26,799 Block: cn_dist 2021-07-15T09:52:26,799 Block: cutoff_distance_stats 2021-07-15T09:52:26,799 Block: determinant_func 2021-07-15T09:52:26,799 Block: determinant 2021-07-15T09:52:26,799 Block: distance 2021-07-15T09:52:26,799 Block: distance_info 2021-07-15T09:52:26,800 Block: quicksort 2021-07-15T09:52:26,800 Block: quick_sort 2021-07-15T09:52:26,800 Block: cg_function 2021-07-15T09:52:26,800 Block: calculate_cg 2021-07-15T09:52:26,800 Block: angle 2021-07-15T09:52:26,800 Block: angle_info 2021-07-15T09:52:26,800 Block: c_stats 2021-07-15T09:52:26,800 Block: customize_stats 2021-07-15T09:52:26,800 Block: a_stats 2021-07-15T09:52:26,801 Block: all_stats 2021-07-15T09:52:26,801 Post-processing (stage 2)... 2021-07-15T09:52:26,801 Block: distance_stats 2021-07-15T09:52:26,801 Block: unknown_interface 2021-07-15T09:52:26,801 Block: cn_dist 2021-07-15T09:52:26,801 Block: cutoff_distance_stats 2021-07-15T09:52:26,801 Block: determinant_func 2021-07-15T09:52:26,801 Block: determinant 2021-07-15T09:52:26,801 Block: distance 2021-07-15T09:52:26,802 Block: distance_info 2021-07-15T09:52:26,802 Block: quicksort 2021-07-15T09:52:26,802 Block: quick_sort 2021-07-15T09:52:26,802 Block: cg_function 2021-07-15T09:52:26,802 Block: calculate_cg 2021-07-15T09:52:26,802 Block: angle 2021-07-15T09:52:26,802 Block: angle_info 2021-07-15T09:52:26,802 Block: c_stats 2021-07-15T09:52:26,802 Block: customize_stats 2021-07-15T09:52:26,803 Block: a_stats 2021-07-15T09:52:26,803 Block: all_stats 2021-07-15T09:52:26,803 Building modules... 2021-07-15T09:52:26,803 Building module "distance_stats"... 2021-07-15T09:52:26,803 Constructing wrapper function "cn_dist"... 2021-07-15T09:52:26,803 cn = cn_dist(n_neighbor_list) 2021-07-15T09:52:26,803 Constructing wrapper function "cutoff_distance_stats"... 2021-07-15T09:52:26,803 cutoff_distance_stats(distance_stats,n_neighbor_list,neighbor_distance_lists,[n_atoms,n_neighbor_limit]) 2021-07-15T09:52:26,803 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:26,804 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:26,804 deter_value = determinant(matrix) 2021-07-15T09:52:26,804 Constructing F90 module support for "distance"... 2021-07-15T09:52:26,804 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:26,804 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:26,804 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:26,804 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:26,804 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:26,804 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:26,804 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:26,805 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:26,805 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:26,805 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:26,805 Constructing F90 module support for "angle"... 2021-07-15T09:52:26,805 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:26,805 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:26,805 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:26,805 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:26,805 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:26,806 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:26,806 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:26,806 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:26,806 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:26,806 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:26,806 Wrote C/API module "distance_stats" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_statsmodule.c" 2021-07-15T09:52:26,806 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90" 2021-07-15T09:52:26,806 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:26,806 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:26,807 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:26,807 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T09:52:26,807 f2py options: [] 2021-07-15T09:52:26,807 f2py:> build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c 2021-07-15T09:52:26,913 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,914 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,915 rmbadname1: Replacing "min" with "min_bn". 2021-07-15T09:52:26,915 rmbadname1: Replacing "max" with "max_bn". 2021-07-15T09:52:26,950 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,956 appenddecl: "dimension" not implemented. 2021-07-15T09:52:26,959 rmbadname1: Replacing "len" with "len_bn". 2021-07-15T09:52:26,960 appenddecl: "dimension" not implemented. 2021-07-15T09:52:27,221 Reading fortran codes... 2021-07-15T09:52:27,221 Reading file 'amlearn/featurize/src/distance_nn.f90' (format:free) 2021-07-15T09:52:27,222 {'before': '', 'this': 'use', 'after': ':: distance '} 2021-07-15T09:52:27,222 Line #24 in amlearn/featurize/src/distance_nn.f90:" use :: distance " 2021-07-15T09:52:27,222 analyzeline: Could not crack the use statement. 2021-07-15T09:52:27,222 {'before': '', 'this': 'use', 'after': ':: quicksort '} 2021-07-15T09:52:27,222 Line #26 in amlearn/featurize/src/distance_nn.f90:" use :: quicksort " 2021-07-15T09:52:27,222 analyzeline: Could not crack the use statement. 2021-07-15T09:52:27,222 Reading file 'amlearn/featurize/src/utils.f90' (format:free) 2021-07-15T09:52:27,223 Post-processing... 2021-07-15T09:52:27,223 Block: distance_nn 2021-07-15T09:52:27,223 Block: distance_neighbor 2021-07-15T09:52:27,223 Block: determinant_func 2021-07-15T09:52:27,223 Block: determinant 2021-07-15T09:52:27,223 Block: distance 2021-07-15T09:52:27,223 Block: distance_info 2021-07-15T09:52:27,223 Block: quicksort 2021-07-15T09:52:27,224 Block: quick_sort 2021-07-15T09:52:27,224 Block: cg_function 2021-07-15T09:52:27,224 Block: calculate_cg 2021-07-15T09:52:27,224 Block: angle 2021-07-15T09:52:27,224 Block: angle_info 2021-07-15T09:52:27,224 Block: c_stats 2021-07-15T09:52:27,225 Block: customize_stats 2021-07-15T09:52:27,225 Block: a_stats 2021-07-15T09:52:27,225 Block: all_stats 2021-07-15T09:52:27,225 Post-processing (stage 2)... 2021-07-15T09:52:27,225 Block: distance_nn 2021-07-15T09:52:27,225 Block: unknown_interface 2021-07-15T09:52:27,225 Block: distance_neighbor 2021-07-15T09:52:27,226 Block: determinant_func 2021-07-15T09:52:27,226 Block: determinant 2021-07-15T09:52:27,226 Block: distance 2021-07-15T09:52:27,226 Block: distance_info 2021-07-15T09:52:27,226 Block: quicksort 2021-07-15T09:52:27,226 Block: quick_sort 2021-07-15T09:52:27,226 Block: cg_function 2021-07-15T09:52:27,227 Block: calculate_cg 2021-07-15T09:52:27,227 Block: angle 2021-07-15T09:52:27,227 Block: angle_info 2021-07-15T09:52:27,227 Block: c_stats 2021-07-15T09:52:27,227 Block: customize_stats 2021-07-15T09:52:27,227 Block: a_stats 2021-07-15T09:52:27,228 Block: all_stats 2021-07-15T09:52:27,228 Building modules... 2021-07-15T09:52:27,228 Building module "distance_nn"... 2021-07-15T09:52:27,228 Constructing wrapper function "distance_neighbor"... 2021-07-15T09:52:27,228 n_neighbor_list,neighbor_lists,neighbor_distance_lists = distance_neighbor(atom_type,atom_coords,distance_cutoff,allow_neighbor_limit,pbc,bds,n_neighbor_list,neighbor_lists,neighbor_distance_lists,print_freq,[n_atoms,n_neighbor_limit]) 2021-07-15T09:52:27,228 Constructing F90 module support for "determinant_func"... 2021-07-15T09:52:27,229 Constructing wrapper function "determinant_func.determinant"... 2021-07-15T09:52:27,229 deter_value = determinant(matrix) 2021-07-15T09:52:27,229 Constructing F90 module support for "distance"... 2021-07-15T09:52:27,229 Constructing wrapper function "distance.distance_info"... 2021-07-15T09:52:27,229 r,d = distance_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:27,229 Constructing F90 module support for "quicksort"... 2021-07-15T09:52:27,230 Creating wrapper for Fortran subroutine "quick_sort"("quick_sort")... 2021-07-15T09:52:27,230 Constructing wrapper function "quicksort.quick_sort"... 2021-07-15T09:52:27,230 quick_sort(array,sort_col,sort_index_min,sort_index_max) 2021-07-15T09:52:27,230 Constructing F90 module support for "cg_function"... 2021-07-15T09:52:27,230 Creating wrapper for Fortran function "calculate_cg"("calculate_cg")... 2021-07-15T09:52:27,230 Constructing wrapper function "cg_function.calculate_cg"... 2021-07-15T09:52:27,231 cg = calculate_cg(half_l_min,half_l_max) 2021-07-15T09:52:27,231 Constructing F90 module support for "angle"... 2021-07-15T09:52:27,231 Constructing wrapper function "angle.angle_info"... 2021-07-15T09:52:27,231 ksai,theta = angle_info(atom_coords_i,atom_coords_j,bds,pbc) 2021-07-15T09:52:27,231 Constructing F90 module support for "c_stats"... 2021-07-15T09:52:27,231 Creating wrapper for Fortran function "customize_stats"("customize_stats")... 2021-07-15T09:52:27,231 Constructing wrapper function "c_stats.customize_stats"... 2021-07-15T09:52:27,232 stats = customize_stats(list,stats_types,stats_types_sum,self_prop) 2021-07-15T09:52:27,232 Constructing F90 module support for "a_stats"... 2021-07-15T09:52:27,232 Creating wrapper for Fortran function "all_stats"("all_stats")... 2021-07-15T09:52:27,232 Constructing wrapper function "a_stats.all_stats"... 2021-07-15T09:52:27,232 stats = all_stats(list,[len_bn]) 2021-07-15T09:52:27,232 Wrote C/API module "distance_nn" to file "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nnmodule.c" 2021-07-15T09:52:27,233 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90" 2021-07-15T09:52:27,233 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:27,233 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:27,233 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T09:52:27,233 build_src: building npy-pkg config files 2021-07-15T09:52:27,233 creating /tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info 2021-07-15T09:52:27,234 writing /tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/PKG-INFO 2021-07-15T09:52:27,234 writing dependency_links to /tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/dependency_links.txt 2021-07-15T09:52:27,234 writing requirements to /tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/requires.txt 2021-07-15T09:52:27,234 writing top-level names to /tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/top_level.txt 2021-07-15T09:52:27,234 writing manifest file '/tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/SOURCES.txt' 2021-07-15T09:52:27,290 reading manifest file '/tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/SOURCES.txt' 2021-07-15T09:52:27,296 writing manifest file '/tmp/pip-pip-egg-info-rlsy4xsg/amlearn.egg-info/SOURCES.txt' 2021-07-15T09:52:27,437 Source in /tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5 has version 0.3.4, which satisfies requirement amlearn==0.3.4 from https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 2021-07-15T09:52:27,438 Removed amlearn==0.3.4 from https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz#sha256=35b993401f1b75cf97104aec6aca3f1c5d2d89dc7a991d18d2f60412f36ca428 from build tracker '/tmp/pip-req-tracker-zcx6gfww' 2021-07-15T09:52:27,442 Created temporary directory: /tmp/pip-unpack-ffzsaz73 2021-07-15T09:52:27,442 Building wheels for collected packages: amlearn 2021-07-15T09:52:27,446 Created temporary directory: /tmp/pip-wheel-3d_64vfy 2021-07-15T09:52:27,447 Building wheel for amlearn (setup.py): started 2021-07-15T09:52:27,447 Destination directory: /tmp/pip-wheel-3d_64vfy 2021-07-15T09:52:27,447 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3d_64vfy 2021-07-15T09:52:28,917 running bdist_wheel 2021-07-15T09:52:28,918 running build 2021-07-15T09:52:28,918 running config_cc 2021-07-15T09:52:28,918 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-15T09:52:28,919 running config_fc 2021-07-15T09:52:28,920 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-15T09:52:28,920 running build_src 2021-07-15T09:52:28,920 build_src 2021-07-15T09:52:28,920 building extension "amlearn.featurize.src.utils" sources 2021-07-15T09:52:28,920 f2py options: [] 2021-07-15T09:52:28,920 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:28,920 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,015 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/utils-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,016 building extension "amlearn.featurize.src.voronoi_nn" sources 2021-07-15T09:52:29,016 f2py options: [] 2021-07-15T09:52:29,016 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,016 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,016 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_nn-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,016 building extension "amlearn.featurize.src.voronoi_stats" sources 2021-07-15T09:52:29,017 f2py options: [] 2021-07-15T09:52:29,017 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,017 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,017 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/voronoi_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,017 building extension "amlearn.featurize.src.boop" sources 2021-07-15T09:52:29,017 f2py options: [] 2021-07-15T09:52:29,018 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,018 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,018 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/boop-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,018 building extension "amlearn.featurize.src.mro_stats" sources 2021-07-15T09:52:29,018 f2py options: [] 2021-07-15T09:52:29,018 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,019 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,019 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/mro_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,019 building extension "amlearn.featurize.src.neighbor_data" sources 2021-07-15T09:52:29,019 f2py options: [] 2021-07-15T09:52:29,019 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,019 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,019 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/neighbor_data-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,019 building extension "amlearn.featurize.src.distance_stats" sources 2021-07-15T09:52:29,020 f2py options: [] 2021-07-15T09:52:29,020 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,020 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,020 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_stats-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,020 building extension "amlearn.featurize.src.distance_nn" sources 2021-07-15T09:52:29,020 f2py options: [] 2021-07-15T09:52:29,020 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c' to sources. 2021-07-15T09:52:29,021 adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src' to include_dirs. 2021-07-15T09:52:29,021 adding 'build/src.linux-armv7l-3.9/amlearn/featurize/src/distance_nn-f2pywrappers2.f90' to sources. 2021-07-15T09:52:29,021 build_src: building npy-pkg config files 2021-07-15T09:52:29,022 running build_py 2021-07-15T09:52:29,026 creating build/lib.linux-armv7l-3.9 2021-07-15T09:52:29,026 creating build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,027 copying scripts/distribution.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,029 copying scripts/classification.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,031 copying scripts/featurize_interstice.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,033 copying scripts/featurize_bp_symmfunc.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,034 copying scripts/fractal_analysis.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,037 copying scripts/feature_violinplot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,039 copying scripts/regression.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,041 copying scripts/__init__.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,042 copying scripts/generalization.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,044 copying scripts/pdp_plot.py -> build/lib.linux-armv7l-3.9/scripts 2021-07-15T09:52:29,046 creating build/lib.linux-armv7l-3.9/amlearn 2021-07-15T09:52:29,047 copying amlearn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T09:52:29,048 copying amlearn/_version.py -> build/lib.linux-armv7l-3.9/amlearn 2021-07-15T09:52:29,050 creating build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,051 copying amlearn/learn/regressor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,054 copying amlearn/learn/predict.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,056 copying amlearn/learn/preprocessor.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,058 copying amlearn/learn/classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,060 copying amlearn/learn/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,062 copying amlearn/learn/base.py -> build/lib.linux-armv7l-3.9/amlearn/learn 2021-07-15T09:52:29,064 creating build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,065 copying amlearn/featurize/nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,067 copying amlearn/featurize/pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,069 copying amlearn/featurize/symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,071 copying amlearn/featurize/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,073 copying amlearn/featurize/medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,075 copying amlearn/featurize/base.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,076 copying amlearn/featurize/short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:29,081 creating build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,081 copying amlearn/utils/directory.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,083 copying amlearn/utils/basetest.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,085 copying amlearn/utils/data.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,086 copying amlearn/utils/backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,089 copying amlearn/utils/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,090 copying amlearn/utils/packing.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,091 copying amlearn/utils/logging.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,093 copying amlearn/utils/check.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,095 copying amlearn/utils/verbose.py -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,098 creating build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T09:52:29,098 copying amlearn/learn/tests/test_classifier.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T09:52:29,100 copying amlearn/learn/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/tests 2021-07-15T09:52:29,102 creating build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T09:52:29,103 copying amlearn/learn/sklearn_patch/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T09:52:29,104 copying amlearn/learn/sklearn_patch/_split.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T09:52:29,108 copying amlearn/learn/sklearn_patch/_validation.py -> build/lib.linux-armv7l-3.9/amlearn/learn/sklearn_patch 2021-07-15T09:52:29,112 creating build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,113 copying amlearn/featurize/tests/test_symmetry_function.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,115 copying amlearn/featurize/tests/test_featurizer_pipeline.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,117 copying amlearn/featurize/tests/test_nearest_neighbor.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,118 copying amlearn/featurize/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,120 copying amlearn/featurize/tests/test_medium_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,121 copying amlearn/featurize/tests/test_short_range_order.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/tests 2021-07-15T09:52:29,124 creating build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:29,125 copying amlearn/featurize/src/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:29,127 creating build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T09:52:29,128 copying amlearn/utils/tests/test_backend.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T09:52:29,130 copying amlearn/utils/tests/__init__.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T09:52:29,131 copying amlearn/utils/tests/test_data.py -> build/lib.linux-armv7l-3.9/amlearn/utils/tests 2021-07-15T09:52:29,132 copying amlearn/utils/amlearn_logging.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,134 copying amlearn/utils/default_environment.yaml -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,136 copying amlearn/utils/PTE.json -> build/lib.linux-armv7l-3.9/amlearn/utils 2021-07-15T09:52:29,144 running build_ext 2021-07-15T09:52:29,150 customize UnixCCompiler 2021-07-15T09:52:29,152 customize UnixCCompiler using build_ext 2021-07-15T09:52:29,302 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-15T09:52:29,302 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,304 creating /tmp/tmpuwavso5u/home 2021-07-15T09:52:29,304 creating /tmp/tmpuwavso5u/home/piwheels 2021-07-15T09:52:29,305 creating /tmp/tmpuwavso5u/home/piwheels/.local 2021-07-15T09:52:29,306 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib 2021-07-15T09:52:29,307 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9 2021-07-15T09:52:29,308 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages 2021-07-15T09:52:29,309 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-15T09:52:29,310 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-15T09:52:29,311 creating /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-15T09:52:29,312 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,312 extra options: '-march=native' 2021-07-15T09:52:29,406 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-15T09:52:29,407 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,407 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,407 extra options: '-O3' 2021-07-15T09:52:29,488 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-15T09:52:29,488 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,489 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,489 extra options: '-Werror' 2021-07-15T09:52:29,570 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-15T09:52:29,576 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-15T09:52:29,583 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-15T09:52:29,584 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,585 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,585 extra options: '-mfpu=neon' 2021-07-15T09:52:29,670 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T09:52:29,670 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,671 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,671 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-15T09:52:29,753 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-15T09:52:29,753 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,754 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,754 extra options: '-mfpu=neon-vfpv4' 2021-07-15T09:52:29,835 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-15T09:52:29,836 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:29,836 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:29,836 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-15T09:52:30,228 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-15T09:52:30,229 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:30,230 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:30,230 extra options: '-mfpu=neon -Werror' 2021-07-15T09:52:30,609 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T09:52:30,609 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:30,610 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:30,610 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-15T09:52:30,692 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-15T09:52:30,693 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:30,694 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:30,694 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-15T09:52:31,123 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-15T09:52:31,124 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:31,124 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:31,124 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-15T09:52:31,519 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-15T09:52:31,520 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:31,520 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:31,520 extra options: '-march=armv8.2-a+fp16' 2021-07-15T09:52:31,603 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-15T09:52:31,604 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:31,604 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:31,605 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-15T09:52:32,052 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-15T09:52:32,053 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:32,054 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:32,054 extra options: '-march=armv8.2-a+dotprod' 2021-07-15T09:52:32,136 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-15T09:52:32,137 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:32,138 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:32,138 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-15T09:52:32,571 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-15T09:52:32,572 /tmp/ccLDDedS.s: Assembler messages: 2021-07-15T09:52:32,572 /tmp/ccLDDedS.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-15T09:52:32,579 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T09:52:32,586 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-15T09:52:32,587 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:32,587 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:32,587 extra options: '-march=armv8.2-a+fp16fml' 2021-07-15T09:52:32,670 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-15T09:52:32,671 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:32,672 compile options: '-I/usr/include/python3.9 -c' 2021-07-15T09:52:32,672 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-15T09:52:33,088 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpuwavso5u/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-15T09:52:33,088 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-15T09:52:33,088 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-15T09:52:33,089 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T09:52:33,089 | ^~~~~~~~~~~~~~ 2021-07-15T09:52:33,089 | vfmlal_low_f16 2021-07-15T09:52:33,089 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-15T09:52:33,089 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-15T09:52:33,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T09:52:33,089 | | 2021-07-15T09:52:33,089 | int 2021-07-15T09:52:33,090 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T09:52:33,090 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-15T09:52:33,090 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-15T09:52:33,090 | ~~~~~~~~~~~~^~~ 2021-07-15T09:52:33,090 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-15T09:52:33,090 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T09:52:33,090 | ^~~~~~~~~~~~~~~~ 2021-07-15T09:52:33,090 | vfmlslq_high_f16 2021-07-15T09:52:33,090 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-15T09:52:33,091 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-15T09:52:33,091 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T09:52:33,091 | | 2021-07-15T09:52:33,091 | int 2021-07-15T09:52:33,091 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-15T09:52:33,091 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-15T09:52:33,091 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-15T09:52:33,091 | ~~~~~~~~~~~~^~~ 2021-07-15T09:52:33,091 cc1: all warnings being treated as errors 2021-07-15T09:52:33,098 CCompilerOpt.feature_test[1477] : testing failed 2021-07-15T09:52:33,104 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-15T09:52:33,110 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-15T09:52:33,116 CCompilerOpt._parse_target_tokens[1934] : skip targets (SSE2 SSE42 XOP FMA4 VSX3 AVX512_SKX AVX512F (FMA3 AVX2) VSX2 VSX) not part of baseline or dispatch-able features 2021-07-15T09:52:33,123 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-15T09:52:33,128 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-15T09:52:33,221 get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2021-07-15T09:52:33,222 customize Gnu95FCompiler 2021-07-15T09:52:33,226 Found executable /usr/bin/gfortran 2021-07-15T09:52:33,276 customize Gnu95FCompiler 2021-07-15T09:52:33,323 customize Gnu95FCompiler using build_ext 2021-07-15T09:52:33,324 building 'amlearn.featurize.src.utils' extension 2021-07-15T09:52:33,326 compiling C sources 2021-07-15T09:52:33,327 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-15T09:52:33,328 creating build/temp.linux-armv7l-3.9/build 2021-07-15T09:52:33,329 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T09:52:33,547 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T09:52:33,548 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:33,549 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:33,551 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build 2021-07-15T09:52:33,551 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2021-07-15T09:52:33,552 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn 2021-07-15T09:52:33,553 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:33,554 creating build/temp.linux-armv7l-3.9/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:33,555 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T09:52:33,741 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.carm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c 2021-07-15T09:52:34,133 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T09:52:34,133 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T09:52:34,133 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T09:52:34,133 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T09:52:34,133 from build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:16: 2021-07-15T09:52:34,134 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T09:52:34,134 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T09:52:34,134 | ^~~~~~~ 2021-07-15T09:52:34,148 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T09:52:34,149 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T09:52:34,149 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T09:52:34,149 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.h:13, 2021-07-15T09:52:34,149 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src/fortranobject.c:2: 2021-07-15T09:52:34,149 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T09:52:34,149 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T09:52:34,149 | ^~~~~~~ 2021-07-15T09:52:34,212 build/src.linux-armv7l-3.9/amlearn/featurize/src/utilsmodule.c:109:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2021-07-15T09:52:34,212 109 | static int f2py_size(PyArrayObject* var, ...) 2021-07-15T09:52:34,212 | ^~~~~~~~~ 2021-07-15T09:52:35,375 compiling Fortran 90 module sources 2021-07-15T09:52:35,376 creating build/temp.linux-armv7l-3.9/amlearn 2021-07-15T09:52:35,376 creating build/temp.linux-armv7l-3.9/amlearn/featurize 2021-07-15T09:52:35,377 creating build/temp.linux-armv7l-3.9/amlearn/featurize/src 2021-07-15T09:52:35,379 Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T09:52:35,379 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T09:52:35,379 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2021-07-15T09:52:35,379 compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-15T09:52:35,379 extra options: '-Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src' 2021-07-15T09:52:35,385 gfortran:f90: amlearn/featurize/src/utils.f90 2021-07-15T09:52:35,453 amlearn/featurize/src/utils.f90:259:16: 2021-07-15T09:52:35,453 259 | REAL(16) :: std 2021-07-15T09:52:35,453 | 1 2021-07-15T09:52:35,454 Error: Kind 16 not supported for type REAL at (1) 2021-07-15T09:52:35,454 amlearn/featurize/src/utils.f90:285:18: 2021-07-15T09:52:35,455 285 | std = std + (list(atom) - mean)**2 2021-07-15T09:52:35,455 | 1 2021-07-15T09:52:35,455 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] 2021-07-15T09:52:35,461 error: Command "/usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops -Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amlearn/featurize/src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c -c amlearn/featurize/src/utils.f90 -o build/temp.linux-armv7l-3.9/amlearn/featurize/src/utils.o -Jbuild/temp.linux-armv7l-3.9/amlearn/featurize/src -Ibuild/temp.linux-armv7l-3.9/amlearn/featurize/src" failed with exit status 1 2021-07-15T09:52:35,462 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-15T09:52:35,462 Platform : 2021-07-15T09:52:35,462 Architecture: armhf 2021-07-15T09:52:35,462 Compiler : gcc 2021-07-15T09:52:35,463 CPU baseline : 2021-07-15T09:52:35,463 Requested : 'min' 2021-07-15T09:52:35,463 Enabled : none 2021-07-15T09:52:35,463 Flags : none 2021-07-15T09:52:35,463 Extra checks: none 2021-07-15T09:52:35,463 CPU dispatch : 2021-07-15T09:52:35,463 Requested : 'max -xop -fma4' 2021-07-15T09:52:35,463 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-15T09:52:35,464 Generated : none 2021-07-15T09:52:35,465 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-15T09:52:35,632 Building wheel for amlearn (setup.py): finished with status 'error' 2021-07-15T09:52:35,633 ERROR: Failed building wheel for amlearn 2021-07-15T09:52:35,634 Running setup.py clean for amlearn 2021-07-15T09:52:35,634 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5htrcrl6/amlearn_1555f4a1c063441fa7bf6b413d3f3cb5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T09:52:37,095 running clean 2021-07-15T09:52:37,095 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T09:52:37,110 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T09:52:37,134 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T09:52:37,134 'build/scripts.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T09:52:37,262 Failed to build amlearn 2021-07-15T09:52:37,263 ERROR: Failed to build one or more wheels 2021-07-15T09:52:37,264 Exception information: 2021-07-15T09:52:37,264 Traceback (most recent call last): 2021-07-15T09:52:37,264 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T09:52:37,264 status = self.run(options, args) 2021-07-15T09:52:37,264 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T09:52:37,264 return func(self, options, args) 2021-07-15T09:52:37,264 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T09:52:37,264 raise CommandError( 2021-07-15T09:52:37,264 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T09:52:37,266 Removed build tracker: '/tmp/pip-req-tracker-zcx6gfww'