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2021-07-15T10:42:51,688 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/5e/f1/d4d9a4bcac51e602457f7b44b7dd69f9eda0f40cbfa029a8ebde73a36e80/atropos-1.1.23-py3.6-macosx-10.14-x86_64.egg#sha256=67f47114a53a76bedf65a5f539d81b8e7021e70f83a4b103299bb88cd2d18c1f (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,688 Found link https://files.pythonhosted.org/packages/d2/60/c78b463063920f7638bd54883e314448d34ee7215021f357d0bf7adae238/atropos-1.1.23.tar.gz#sha256=e1a9d030fcaff21a10ca2d5a569451e52f2d6f8f6b2a34ab3574453bda46da9f (from https://pypi.org/simple/atropos/), version: 1.1.23 2021-07-15T10:42:51,689 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/45/66/54a62870a89664f0e3882489663b548f6a437c3d0299569943f4306e5fb8/atropos-1.1.24-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=78ba27244ca2562f2797c01d693303e3cf472ac5665bac791ce33837eaee3307 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,689 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/ff/04ba086b6eff20bc140cd737ab5697bc8b31b56eab98c1b4f44fa3affc53/atropos-1.1.24-py3.6-macosx-10.14-x86_64.egg#sha256=dbb4d3245e6c34932cfd44a30376c6bb9aaa6017d753fa1e1b7b129755c000f2 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,689 Found link https://files.pythonhosted.org/packages/a9/91/09d9099f432f511d1b90868025f4ca2198355262f9a3730f39b42e6a2b4a/atropos-1.1.24.tar.gz#sha256=fb745ef629a6662fca55129a4414b9811320749a86d65d454a5860fc44905dfd (from https://pypi.org/simple/atropos/), version: 1.1.24 2021-07-15T10:42:51,690 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ad/21/ff90e0d5bc835283014660b62be9b96926f865bbdc01fb33afe02bf86e27/atropos-1.1.25-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=a926ff0bdb8f110797d1642734c65ea5e359232ba4d69e4f5c4e1da675fe2938 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,690 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/07/ea553301cf2ee3b7e2fe4af14ae615e0b3474bfe3f6b4ce66bf6a372deb5/atropos-1.1.25-py3.6-macosx-10.14-x86_64.egg#sha256=c06eca93dc5d6b43e96de1983acff22da2ffbc7bb945fe2e536673b25ba4208e (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,691 Found link https://files.pythonhosted.org/packages/62/f2/789f02733aa401b9c07f3a21ec1ef0ad2906d7f40107c299e6dc6684252e/atropos-1.1.25.tar.gz#sha256=d09e639baed19c1063596d62dcce5d55ab4c1cebbdca02f0aa049f6a53877cf2 (from https://pypi.org/simple/atropos/), version: 1.1.25 2021-07-15T10:42:51,691 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/59/eea84e96f8e08d8be7528acc45ad0d1f35c3ffa3727a32b8923cb3756771/atropos-1.1.26-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=0502ede3ad404b08f1d8c7e79ecd3b1747e192c044276b0944da98fb184e261c (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,692 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a1/a7/b13f86fe6937cadde70f2a0010778211626e5aa19c5313f8442e6be45cb4/atropos-1.1.26-py3.6-macosx-10.14-x86_64.egg#sha256=4725e0b0952c202ba4c52795871e0780cefb9456042bb2e46331da06536fbdcd (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,692 Found link https://files.pythonhosted.org/packages/c3/17/3e3ffe239bfdd9edef9819bb4aa9f7d25d5c9cfbcea95335b5126cb7c5e9/atropos-1.1.26.tar.gz#sha256=d17d566739789a75cf0086403ef587d0dbd2356382d9e73323ad6392d51faed8 (from https://pypi.org/simple/atropos/), version: 1.1.26 2021-07-15T10:42:51,693 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/19/d94857abe6a2a5a144974a8c68249bd5ade9981220d1854a57140c736372/atropos-1.1.27-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=bead780e9e3e778a95ed5550becfba07a01091baefc59794633c56fa9032a1b0 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,693 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c2/76/73ef18afade988fab4e02a96b5ad33952fcafe9bc9e9712b53d005dee244/atropos-1.1.27-py3.6-macosx-10.14-x86_64.egg#sha256=94cb1e60dfff272b1985b2e0a4dbd4d5b6c7af48a06561f4a3b78a2b3a840e17 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,693 Found link https://files.pythonhosted.org/packages/0b/97/b92663f63b05cec9daaa0e049472305ce2181c36681919c6968d8615f6c6/atropos-1.1.27.tar.gz#sha256=7aabff3e47896fbb287479cc3d27b8902b1b684828140e491d0b357f7bf0c61e (from https://pypi.org/simple/atropos/), version: 1.1.27 2021-07-15T10:42:51,694 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/7a/12/2f96d965c8041584fdfc089bf0ff34465f9aaf073fef67997bf5b9457d3e/atropos-1.1.28-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=fcba3b4d6878ca731fbc792818e87e517a89a3972e57562dcc8667e727f9ade0 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,694 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/e1/77a7956bf278d98e4f504aacaeb4c803d49f3d298b3a44bd2847bca10617/atropos-1.1.28-py3.6-macosx-10.14-x86_64.egg#sha256=239066f5f7891b1706c5ab411a70a5bca238a93dd44cfbf6840ac690b2f17449 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,695 Found link https://files.pythonhosted.org/packages/1a/b2/6e0f436070c50af53de5832facffda28c6126358b0e13719ae4fbc4aa165/atropos-1.1.28.tar.gz#sha256=0effe978e4f4e75fdccb68ab3904c99eca7c7b80e98c75e77fc8a48033bca4ae (from https://pypi.org/simple/atropos/), version: 1.1.28 2021-07-15T10:42:51,695 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ad/ff/d6f1231c0d9cc907316c9db327567a66a10b859348b2038119af3b79e008/atropos-1.1.29-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=e5395c121e927a49c31aa9d7d6efb262a7a9b086f6aef1911279a6cefca1e647 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,696 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d5/37/66bb03241afda53d8d3d4bc04bd44b3ddfbdd44d4ddad64cf222a4b36e4d/atropos-1.1.29-py3.6-macosx-10.14-x86_64.egg#sha256=6572fe8315654d8187e2b3a2bb3c313abc5128494e3ee2e44be317ab3af755b5 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,696 Found link https://files.pythonhosted.org/packages/cf/47/5d10763f4e1f77464bb58c25a9684881cd3896955f2882908251f1e083df/atropos-1.1.29.tar.gz#sha256=904a9e5dedf13bc0d49b06577935bd66ec0d65375f82587ac31cb9eb915f3c50 (from https://pypi.org/simple/atropos/), version: 1.1.29 2021-07-15T10:42:51,697 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4b/bc/cc67d8b4325db34086f46b8c84b08777add846094d51c362ef24811b7d2b/atropos-1.1.31-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=24681c34af3d69447d401568509ca8d850345c768aae0c32bd9ee1b2889fc66c (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,697 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4a/59/f0dc925dcfcd4bccf5fdc1ba6552931a07ecc20d550a0d19668fdf269cbb/atropos-1.1.31-py3.6-macosx-10.14-x86_64.egg#sha256=8a0a07f33f35972813b1606ef2de37299db1a11a5227c1cdfdaead62e1597bb1 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,697 Found link https://files.pythonhosted.org/packages/5f/30/17beaa053265f6985825d3deb7e32fe073ff2e077d63dff5cb030dc78fda/atropos-1.1.31.tar.gz#sha256=5219575de12334d4b6a365ff682d6271d54fb01568ae52cc27522e33684789c6 (from https://pypi.org/simple/atropos/), version: 1.1.31 2021-07-15T10:42:51,698 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/17/d6/f61706d3e314662e0cb2d69191df07ac62534306e15098ef53362ba8dc78/atropos-2.0.0a1-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=9cd379d2925850dd7e02905375115d2363237a610b76f32ab264e6418fa6f85f (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,698 Found link https://files.pythonhosted.org/packages/6b/ac/5504814209982eb939996f00bd3f6f2fc8bc0715980f568ac6d42acc4c7c/atropos-2.0.0a1.tar.gz#sha256=b19c03ee7972011b3e8401466244cb3ad063b50cdae1803bcd6808a16a7eeea8 (from https://pypi.org/simple/atropos/), version: 2.0.0a1 2021-07-15T10:42:51,699 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/c2/0c778025981bc8711c96ae5b9ad8ec18ff9a4dce58b65d8fc591fd980bde/atropos-2.0.0a2-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=80f7a593e89f2e0e6a1dffe04c56e3135dc8b2b6b3e7ae85d55a91c0a996f0a0 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,699 Found link https://files.pythonhosted.org/packages/82/a2/9f1cd425174848cd85a9fbf58b5f35d98e0db0f8868c6516c567d8befc6e/atropos-2.0.0a2.tar.gz#sha256=e9a9136d6e69e3e6f35fa6e6be3a75bf3a8ae61f21bad045641a76da66e6d8f2 (from https://pypi.org/simple/atropos/), version: 2.0.0a2 2021-07-15T10:42:51,700 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/98/37/d4c57bf65703bd1be7b0a51d6d407f8d61d5d945c5c5f27b1ae72a32e4a6/atropos-2.0.0a3-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=2848e0e5fbc40df052d2516b2a093473400479d09b44d76e983779843d29f528 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,700 Found link https://files.pythonhosted.org/packages/5e/a3/6e402579127c1d96d280182d205c65576a3d96a209bf85bb4a799d589edc/atropos-2.0.0a3.tar.gz#sha256=39049b85d18b3c4870c5dbc42dafae32380dc49953b8e5b856db42b6c8427a91 (from https://pypi.org/simple/atropos/), version: 2.0.0a3 2021-07-15T10:42:51,701 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/b4/af/4c0aa8d5860513332987aa4b32d9a9df0bb1f3c5236b3aaf3c976279424f/atropos-2.0.0a4-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=38d8dec3041749cb7177e0ed2a695f0f6f0af3ce91e96658169b7492ef0444bd (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,702 Found link https://files.pythonhosted.org/packages/1c/85/eea95080a599a35b446346073006c76725d7a07ded0e61f8818f2929948b/atropos-2.0.0a4.tar.gz#sha256=22ff46b3a7488cc9ac7eedc5601047fdd4f6160d41f7f6557b512f68bea4f955 (from https://pypi.org/simple/atropos/), version: 2.0.0a4 2021-07-15T10:42:51,702 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2f/08/1f4eb912e7f677abd037fb367795f15953a399dcaa9368127391938b414f/atropos-2.0.0a5-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=29c1a6228ac9bcddfa2605bd085a8caf427dcce9c957cd428bd9ed4b0976dd1c (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,703 Found link https://files.pythonhosted.org/packages/f3/61/840762024f12582f498591e447f92ea249643212c57d99224cdf9903c2d6/atropos-2.0.0a5.tar.gz#sha256=03e04aa1f0871651cdcdbbbd41908e0169755d0e604c60836f05721ffb9ed9f7 (from https://pypi.org/simple/atropos/), version: 2.0.0a5 2021-07-15T10:42:51,703 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f3/3b/a515e3b361db21abfd9572935a911f23a6edd1d5ff74d654d2be156b724b/atropos-2.0.0a6-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=2014d829785f55fb5a47a4f0fd7ea55ca006370361b567d554bc89b070d7ce43 (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,704 Found link https://files.pythonhosted.org/packages/0e/dd/7bd01a0341f61892b0f8159c61a1550647808720f16fea734e836c76a9ce/atropos-2.0.0a6.tar.gz#sha256=36c7c46c6bb9ba99dbf093513eaa3f027aaa9f80e0652a93e20a3ce3d6862edd (from https://pypi.org/simple/atropos/), version: 2.0.0a6 2021-07-15T10:42:51,704 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3a/ff/6d2e69bb02356a05dec6fc8162b092d1ab15d1966e7ff3b72788e5788c7f/atropos-2.0.0a7-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=9029a39f8f03593088be98487f6e1c9b606388b5cbe287b67bf1e567744f211a (from https://pypi.org/simple/atropos/) 2021-07-15T10:42:51,705 Found link https://files.pythonhosted.org/packages/05/89/a8011e8d200e78c8c7dd5c93d4db3bfe2a0e8d9fda235a056a62227e1a17/atropos-2.0.0a7.tar.gz#sha256=4a872d6ad71dddb23c183c09a5d451920462140b479a4a494406f5a6a668581a (from https://pypi.org/simple/atropos/), version: 2.0.0a7 2021-07-15T10:42:51,705 Skipping link: not a file: https://pypi.org/simple/atropos/ 2021-07-15T10:42:51,715 Given no hashes to check 1 links for project 'atropos': discarding no candidates 2021-07-15T10:42:51,736 Collecting atropos==1.1.25 2021-07-15T10:42:51,737 Created temporary directory: /tmp/pip-unpack-tkdp7lcj 2021-07-15T10:42:51,778 Downloading atropos-1.1.25.tar.gz (7.9 MB) 2021-07-15T10:42:54,021 Added atropos==1.1.25 from https://files.pythonhosted.org/packages/62/f2/789f02733aa401b9c07f3a21ec1ef0ad2906d7f40107c299e6dc6684252e/atropos-1.1.25.tar.gz#sha256=d09e639baed19c1063596d62dcce5d55ab4c1cebbdca02f0aa049f6a53877cf2 to build tracker '/tmp/pip-req-tracker-v7sgmas5' 2021-07-15T10:42:54,022 Running setup.py (path:/tmp/pip-wheel-4j8feibd/atropos_08fb969e5ad442a5974913d10738d627/setup.py) egg_info for package atropos 2021-07-15T10:42:54,023 Created temporary directory: /tmp/pip-pip-egg-info-jdlf952j 2021-07-15T10:42:54,023 Running command python setup.py egg_info 2021-07-15T10:42:55,310 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-15T10:42:55,311 warnings.warn( 2021-07-15T10:42:55,487 running egg_info 2021-07-15T10:42:55,490 creating /tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info 2021-07-15T10:42:55,491 writing /tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/PKG-INFO 2021-07-15T10:42:55,494 writing dependency_links to /tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/dependency_links.txt 2021-07-15T10:42:55,497 writing requirements to /tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/requires.txt 2021-07-15T10:42:55,498 writing top-level names to /tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/top_level.txt 2021-07-15T10:42:55,500 writing manifest file '/tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/SOURCES.txt' 2021-07-15T10:42:55,552 reading manifest file '/tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/SOURCES.txt' 2021-07-15T10:42:55,554 reading manifest template 'MANIFEST.in' 2021-07-15T10:42:55,556 warning: no files found matching 'README.rst' 2021-07-15T10:42:55,557 warning: no files found matching 'LICENSE.txt' 2021-07-15T10:42:55,563 warning: no files found matching 'atropos/report/templates/*' 2021-07-15T10:42:55,579 adding license file 'LICENSE' 2021-07-15T10:42:55,592 writing manifest file '/tmp/pip-pip-egg-info-jdlf952j/atropos.egg-info/SOURCES.txt' 2021-07-15T10:42:55,677 Source in /tmp/pip-wheel-4j8feibd/atropos_08fb969e5ad442a5974913d10738d627 has version 1.1.25, which satisfies requirement atropos==1.1.25 from https://files.pythonhosted.org/packages/62/f2/789f02733aa401b9c07f3a21ec1ef0ad2906d7f40107c299e6dc6684252e/atropos-1.1.25.tar.gz#sha256=d09e639baed19c1063596d62dcce5d55ab4c1cebbdca02f0aa049f6a53877cf2 2021-07-15T10:42:55,678 Removed atropos==1.1.25 from https://files.pythonhosted.org/packages/62/f2/789f02733aa401b9c07f3a21ec1ef0ad2906d7f40107c299e6dc6684252e/atropos-1.1.25.tar.gz#sha256=d09e639baed19c1063596d62dcce5d55ab4c1cebbdca02f0aa049f6a53877cf2 from build tracker '/tmp/pip-req-tracker-v7sgmas5' 2021-07-15T10:42:55,683 Created temporary directory: /tmp/pip-unpack-r84tj4oo 2021-07-15T10:42:55,683 Building wheels for collected packages: atropos 2021-07-15T10:42:55,687 Created temporary directory: /tmp/pip-wheel-6nmbwz2y 2021-07-15T10:42:55,688 Building wheel for atropos (setup.py): started 2021-07-15T10:42:55,688 Destination directory: /tmp/pip-wheel-6nmbwz2y 2021-07-15T10:42:55,688 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4j8feibd/atropos_08fb969e5ad442a5974913d10738d627/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4j8feibd/atropos_08fb969e5ad442a5974913d10738d627/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6nmbwz2y 2021-07-15T10:42:56,948 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-15T10:42:56,949 warnings.warn( 2021-07-15T10:42:57,151 running bdist_wheel 2021-07-15T10:42:57,157 running build 2021-07-15T10:42:57,157 running build_py 2021-07-15T10:42:57,164 creating build 2021-07-15T10:42:57,164 creating build/lib.linux-armv7l-3.9 2021-07-15T10:42:57,165 creating build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,167 copying tests/test_multicore.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,169 copying tests/test_xopen.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,171 copying tests/test_modifiers.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,174 copying tests/test_seqio.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,176 copying tests/test_colorspace.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,179 copying tests/__init__.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,181 copying tests/test_atropos.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,183 copying tests/utils.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,186 copying tests/test_qualtrim.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,189 copying tests/test_commands.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,191 copying tests/test_align.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,193 copying tests/test_trim.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,196 copying tests/test_adapters.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,198 copying tests/test_filters.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,201 copying tests/test_paired.py -> build/lib.linux-armv7l-3.9/tests 2021-07-15T10:42:57,205 creating build/lib.linux-armv7l-3.9/atropos 2021-07-15T10:42:57,206 copying atropos/__init__.py -> build/lib.linux-armv7l-3.9/atropos 2021-07-15T10:42:57,208 copying atropos/_version.py -> build/lib.linux-armv7l-3.9/atropos 2021-07-15T10:42:57,211 creating build/lib.linux-armv7l-3.9/atropos/align 2021-07-15T10:42:57,212 copying atropos/align/__init__.py -> build/lib.linux-armv7l-3.9/atropos/align 2021-07-15T10:42:57,216 creating build/lib.linux-armv7l-3.9/atropos/adapters 2021-07-15T10:42:57,217 copying atropos/adapters/__init__.py -> build/lib.linux-armv7l-3.9/atropos/adapters 2021-07-15T10:42:57,222 creating build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,222 copying atropos/commands/stats.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,226 copying atropos/commands/base.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,229 copying atropos/commands/reports.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,231 copying atropos/commands/cli.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,234 copying atropos/commands/legacy_report.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,238 copying atropos/commands/__init__.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,240 copying atropos/commands/multicore.py -> build/lib.linux-armv7l-3.9/atropos/commands 2021-07-15T10:42:57,243 creating build/lib.linux-armv7l-3.9/atropos/io 2021-07-15T10:42:57,244 copying atropos/io/__init__.py -> build/lib.linux-armv7l-3.9/atropos/io 2021-07-15T10:42:57,247 copying atropos/io/progress.py -> build/lib.linux-armv7l-3.9/atropos/io 2021-07-15T10:42:57,249 copying atropos/io/seqio.py -> build/lib.linux-armv7l-3.9/atropos/io 2021-07-15T10:42:57,253 copying atropos/io/compression.py -> build/lib.linux-armv7l-3.9/atropos/io 2021-07-15T10:42:57,256 creating build/lib.linux-armv7l-3.9/atropos/util 2021-07-15T10:42:57,257 copying atropos/util/__init__.py -> build/lib.linux-armv7l-3.9/atropos/util 2021-07-15T10:42:57,260 copying atropos/util/colorspace.py -> build/lib.linux-armv7l-3.9/atropos/util 2021-07-15T10:42:57,262 creating build/lib.linux-armv7l-3.9/atropos/commands/error 2021-07-15T10:42:57,263 copying atropos/commands/error/reports.py -> build/lib.linux-armv7l-3.9/atropos/commands/error 2021-07-15T10:42:57,265 copying atropos/commands/error/cli.py -> build/lib.linux-armv7l-3.9/atropos/commands/error 2021-07-15T10:42:57,267 copying atropos/commands/error/__init__.py -> build/lib.linux-armv7l-3.9/atropos/commands/error 2021-07-15T10:42:57,271 creating build/lib.linux-armv7l-3.9/atropos/commands/qc 2021-07-15T10:42:57,271 copying atropos/commands/qc/reports.py -> build/lib.linux-armv7l-3.9/atropos/commands/qc 2021-07-15T10:42:57,273 copying atropos/commands/qc/cli.py -> build/lib.linux-armv7l-3.9/atropos/commands/qc 2021-07-15T10:42:57,275 copying atropos/commands/qc/__init__.py -> build/lib.linux-armv7l-3.9/atropos/commands/qc 2021-07-15T10:42:57,278 creating build/lib.linux-armv7l-3.9/atropos/commands/detect 2021-07-15T10:42:57,279 copying atropos/commands/detect/reports.py -> build/lib.linux-armv7l-3.9/atropos/commands/detect 2021-07-15T10:42:57,281 copying atropos/commands/detect/cli.py -> build/lib.linux-armv7l-3.9/atropos/commands/detect 2021-07-15T10:42:57,283 copying atropos/commands/detect/__init__.py -> build/lib.linux-armv7l-3.9/atropos/commands/detect 2021-07-15T10:42:57,287 creating build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,288 copying atropos/commands/trim/qualtrim.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,290 copying atropos/commands/trim/reports.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,292 copying atropos/commands/trim/cli.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,295 copying atropos/commands/trim/__init__.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,298 copying atropos/commands/trim/filters.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,301 copying atropos/commands/trim/multicore.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,303 copying atropos/commands/trim/modifiers.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,306 copying atropos/commands/trim/writers.py -> build/lib.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:42:57,311 copying atropos/adapters/sequencing_adapters.fa -> build/lib.linux-armv7l-3.9/atropos/adapters 2021-07-15T10:42:57,323 UPDATING build/lib.linux-armv7l-3.9/atropos/_version.py 2021-07-15T10:42:57,324 set build/lib.linux-armv7l-3.9/atropos/_version.py to '1.1.25' 2021-07-15T10:42:57,324 running build_ext 2021-07-15T10:42:57,331 building 'atropos.align._align' extension 2021-07-15T10:42:57,332 creating build/temp.linux-armv7l-3.9 2021-07-15T10:42:57,332 creating build/temp.linux-armv7l-3.9/atropos 2021-07-15T10:42:57,333 creating build/temp.linux-armv7l-3.9/atropos/align 2021-07-15T10:42:57,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/align/_align.c -o build/temp.linux-armv7l-3.9/atropos/align/_align.o 2021-07-15T10:42:57,965 atropos/align/_align.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T10:42:57,970 atropos/align/_align.c:9500:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:57,970 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:57,970 | ^ 2021-07-15T10:42:57,971 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:57,971 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:57,971 from atropos/align/_align.c:17: 2021-07-15T10:42:57,972 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:57,972 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:57,972 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:57,978 atropos/align/_align.c:9500:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:57,978 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:57,978 | ^ 2021-07-15T10:42:57,979 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:57,979 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:57,979 from atropos/align/_align.c:17: 2021-07-15T10:42:57,979 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:42:57,979 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:42:57,979 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:57,985 atropos/align/_align.c:9500:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:57,986 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:57,986 | ^ 2021-07-15T10:42:57,986 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:57,986 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:57,986 from atropos/align/_align.c:17: 2021-07-15T10:42:57,986 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:57,987 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:57,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:57,993 atropos/align/_align.c:9500:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:57,993 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:57,993 | ^ 2021-07-15T10:42:57,993 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:57,994 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:57,994 from atropos/align/_align.c:17: 2021-07-15T10:42:57,994 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:57,994 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:57,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,000 atropos/align/_align.c:9500:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,000 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,000 | ^ 2021-07-15T10:42:58,001 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,001 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,001 from atropos/align/_align.c:17: 2021-07-15T10:42:58,001 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:42:58,001 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:42:58,002 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,007 atropos/align/_align.c:9500:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,008 9500 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,008 | ^ 2021-07-15T10:42:58,008 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,008 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,009 from atropos/align/_align.c:17: 2021-07-15T10:42:58,009 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:58,009 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:58,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,016 atropos/align/_align.c:9516:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,017 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,017 | ^ 2021-07-15T10:42:58,017 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,017 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,017 from atropos/align/_align.c:17: 2021-07-15T10:42:58,018 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:58,018 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:58,018 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,024 atropos/align/_align.c:9516:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,024 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,024 | ^ 2021-07-15T10:42:58,024 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,025 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,025 from atropos/align/_align.c:17: 2021-07-15T10:42:58,025 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:42:58,025 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:42:58,025 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,031 atropos/align/_align.c:9516:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,031 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,032 | ^ 2021-07-15T10:42:58,032 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,032 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,032 from atropos/align/_align.c:17: 2021-07-15T10:42:58,032 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:58,032 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:58,033 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,039 atropos/align/_align.c:9516:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,039 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,039 | ^ 2021-07-15T10:42:58,039 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,039 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,040 from atropos/align/_align.c:17: 2021-07-15T10:42:58,040 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:58,040 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:58,040 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,046 atropos/align/_align.c:9516:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,046 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,046 | ^ 2021-07-15T10:42:58,047 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,047 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,047 from atropos/align/_align.c:17: 2021-07-15T10:42:58,047 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:42:58,047 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:42:58,047 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:42:58,053 atropos/align/_align.c:9516:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:42:58,054 9516 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:42:58,054 | ^ 2021-07-15T10:42:58,054 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:42:58,054 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:42:58,054 from atropos/align/_align.c:17: 2021-07-15T10:42:58,054 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:42:58,055 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:42:58,055 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:12,684 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/atropos/align/_align.o -o build/lib.linux-armv7l-3.9/atropos/align/_align.cpython-39-arm-linux-gnueabihf.so 2021-07-15T10:43:12,880 building 'atropos.commands.trim._qualtrim' extension 2021-07-15T10:43:12,881 creating build/temp.linux-armv7l-3.9/atropos/commands 2021-07-15T10:43:12,882 creating build/temp.linux-armv7l-3.9/atropos/commands/trim 2021-07-15T10:43:12,885 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-armv7l-3.9/atropos/commands/trim/_qualtrim.o 2021-07-15T10:43:13,288 atropos/commands/trim/_qualtrim.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T10:43:13,289 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,289 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,289 | ^ 2021-07-15T10:43:13,289 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,290 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,290 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,290 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,290 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,290 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,290 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,291 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,291 | ^ 2021-07-15T10:43:13,291 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,291 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,291 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,291 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:13,292 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:13,292 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,292 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,292 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,292 | ^ 2021-07-15T10:43:13,292 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,293 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,293 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,293 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,293 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,293 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,293 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,293 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,294 | ^ 2021-07-15T10:43:13,294 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,294 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,294 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,294 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,294 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,294 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,295 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,295 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,295 | ^ 2021-07-15T10:43:13,295 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,295 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,296 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,296 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:13,296 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:13,296 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,296 atropos/commands/trim/_qualtrim.c:2113:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,296 2113 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,297 | ^ 2021-07-15T10:43:13,297 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,297 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,297 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,297 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,297 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,297 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,298 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,298 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,298 | ^ 2021-07-15T10:43:13,298 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,298 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,298 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,299 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,299 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,299 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,299 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,299 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,299 | ^ 2021-07-15T10:43:13,299 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,300 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,300 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,300 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:13,300 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:13,300 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,300 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,300 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,301 | ^ 2021-07-15T10:43:13,301 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,301 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,301 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,301 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,301 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,301 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,302 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,302 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,302 | ^ 2021-07-15T10:43:13,302 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,302 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,302 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,303 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,303 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,303 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,303 | ^ 2021-07-15T10:43:13,303 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,304 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,304 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,304 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:13,304 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:13,304 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:13,305 atropos/commands/trim/_qualtrim.c:2129:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:13,305 2129 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:13,305 | ^ 2021-07-15T10:43:13,305 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:13,305 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:13,306 from atropos/commands/trim/_qualtrim.c:16: 2021-07-15T10:43:13,306 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:13,306 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:13,306 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,028 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/atropos/commands/trim/_qualtrim.o -o build/lib.linux-armv7l-3.9/atropos/commands/trim/_qualtrim.cpython-39-arm-linux-gnueabihf.so 2021-07-15T10:43:15,147 building 'atropos.io._seqio' extension 2021-07-15T10:43:15,147 creating build/temp.linux-armv7l-3.9/atropos/io 2021-07-15T10:43:15,148 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/io/_seqio.c -o build/temp.linux-armv7l-3.9/atropos/io/_seqio.o 2021-07-15T10:43:15,686 atropos/io/_seqio.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T10:43:15,690 atropos/io/_seqio.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,690 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,690 | ^ 2021-07-15T10:43:15,690 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,690 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,691 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,691 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,691 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,691 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,694 atropos/io/_seqio.c:6775:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,695 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,695 | ^ 2021-07-15T10:43:15,695 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,695 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,696 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,696 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:15,696 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:15,696 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,698 atropos/io/_seqio.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,699 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,699 | ^ 2021-07-15T10:43:15,699 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,699 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,699 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,699 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,699 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,703 atropos/io/_seqio.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,703 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,703 | ^ 2021-07-15T10:43:15,703 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,703 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,703 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,703 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,704 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,704 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,707 atropos/io/_seqio.c:6775:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,707 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,707 | ^ 2021-07-15T10:43:15,707 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,707 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,707 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,708 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:15,708 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:15,708 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,711 atropos/io/_seqio.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,711 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,711 | ^ 2021-07-15T10:43:15,711 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,711 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,712 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,712 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,712 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,712 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,716 atropos/io/_seqio.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,716 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,716 | ^ 2021-07-15T10:43:15,717 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,717 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,717 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,717 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,717 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,717 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,720 atropos/io/_seqio.c:6791:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,720 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,720 | ^ 2021-07-15T10:43:15,721 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,721 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,721 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,721 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:15,721 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:15,721 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,724 atropos/io/_seqio.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,724 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,725 | ^ 2021-07-15T10:43:15,725 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,725 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,725 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,725 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,725 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,725 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,728 atropos/io/_seqio.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,728 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,729 | ^ 2021-07-15T10:43:15,729 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,729 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,729 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,729 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,729 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,729 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,732 atropos/io/_seqio.c:6791:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,732 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,733 | ^ 2021-07-15T10:43:15,733 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,733 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,733 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,733 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T10:43:15,733 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T10:43:15,733 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:15,736 atropos/io/_seqio.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T10:43:15,737 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T10:43:15,737 | ^ 2021-07-15T10:43:15,737 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T10:43:15,737 from /usr/include/python3.9/Python.h:97, 2021-07-15T10:43:15,737 from atropos/io/_seqio.c:16: 2021-07-15T10:43:15,737 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T10:43:15,737 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T10:43:15,737 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T10:43:27,002 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/atropos/io/_seqio.o -o build/lib.linux-armv7l-3.9/atropos/io/_seqio.cpython-39-arm-linux-gnueabihf.so 2021-07-15T10:43:27,149 running build_scripts 2021-07-15T10:43:27,150 creating build/scripts-3.9 2021-07-15T10:43:27,151 copying and adjusting bin/atropos -> build/scripts-3.9 2021-07-15T10:43:27,153 changing mode of build/scripts-3.9/atropos from 644 to 755 2021-07-15T10:43:27,162 installing to build/bdist.linux-armv7l/wheel 2021-07-15T10:43:27,162 running install 2021-07-15T10:43:27,164 running install_lib 2021-07-15T10:43:27,169 creating build/bdist.linux-armv7l 2021-07-15T10:43:27,169 creating build/bdist.linux-armv7l/wheel 2021-07-15T10:43:27,172 creating build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,173 copying build/lib.linux-armv7l-3.9/tests/test_multicore.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,175 copying build/lib.linux-armv7l-3.9/tests/test_xopen.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,177 copying build/lib.linux-armv7l-3.9/tests/test_modifiers.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,180 copying build/lib.linux-armv7l-3.9/tests/test_seqio.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,183 copying build/lib.linux-armv7l-3.9/tests/test_colorspace.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,186 copying build/lib.linux-armv7l-3.9/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,187 copying build/lib.linux-armv7l-3.9/tests/test_atropos.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,190 copying build/lib.linux-armv7l-3.9/tests/utils.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,192 copying build/lib.linux-armv7l-3.9/tests/test_qualtrim.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,194 copying build/lib.linux-armv7l-3.9/tests/test_commands.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,196 copying build/lib.linux-armv7l-3.9/tests/test_align.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,199 copying build/lib.linux-armv7l-3.9/tests/test_trim.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,201 copying build/lib.linux-armv7l-3.9/tests/test_adapters.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,203 copying build/lib.linux-armv7l-3.9/tests/test_filters.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,206 copying build/lib.linux-armv7l-3.9/tests/test_paired.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-15T10:43:27,210 creating build/bdist.linux-armv7l/wheel/atropos 2021-07-15T10:43:27,211 creating build/bdist.linux-armv7l/wheel/atropos/align 2021-07-15T10:43:27,213 copying build/lib.linux-armv7l-3.9/atropos/align/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/align 2021-07-15T10:43:27,216 copying build/lib.linux-armv7l-3.9/atropos/align/_align.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/atropos/align 2021-07-15T10:43:27,251 creating build/bdist.linux-armv7l/wheel/atropos/adapters 2021-07-15T10:43:27,252 copying build/lib.linux-armv7l-3.9/atropos/adapters/sequencing_adapters.fa -> build/bdist.linux-armv7l/wheel/atropos/adapters 2021-07-15T10:43:27,255 copying build/lib.linux-armv7l-3.9/atropos/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/adapters 2021-07-15T10:43:27,259 creating build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,260 copying build/lib.linux-armv7l-3.9/atropos/commands/stats.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,263 copying build/lib.linux-armv7l-3.9/atropos/commands/base.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,267 creating build/bdist.linux-armv7l/wheel/atropos/commands/error 2021-07-15T10:43:27,268 copying build/lib.linux-armv7l-3.9/atropos/commands/error/reports.py -> build/bdist.linux-armv7l/wheel/atropos/commands/error 2021-07-15T10:43:27,271 copying build/lib.linux-armv7l-3.9/atropos/commands/error/cli.py -> build/bdist.linux-armv7l/wheel/atropos/commands/error 2021-07-15T10:43:27,273 copying build/lib.linux-armv7l-3.9/atropos/commands/error/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/commands/error 2021-07-15T10:43:27,276 copying build/lib.linux-armv7l-3.9/atropos/commands/reports.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,279 copying build/lib.linux-armv7l-3.9/atropos/commands/cli.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,282 copying build/lib.linux-armv7l-3.9/atropos/commands/legacy_report.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,286 copying build/lib.linux-armv7l-3.9/atropos/commands/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,289 creating build/bdist.linux-armv7l/wheel/atropos/commands/qc 2021-07-15T10:43:27,290 copying build/lib.linux-armv7l-3.9/atropos/commands/qc/reports.py -> build/bdist.linux-armv7l/wheel/atropos/commands/qc 2021-07-15T10:43:27,292 copying build/lib.linux-armv7l-3.9/atropos/commands/qc/cli.py -> build/bdist.linux-armv7l/wheel/atropos/commands/qc 2021-07-15T10:43:27,294 copying build/lib.linux-armv7l-3.9/atropos/commands/qc/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/commands/qc 2021-07-15T10:43:27,296 copying build/lib.linux-armv7l-3.9/atropos/commands/multicore.py -> build/bdist.linux-armv7l/wheel/atropos/commands 2021-07-15T10:43:27,299 creating build/bdist.linux-armv7l/wheel/atropos/commands/detect 2021-07-15T10:43:27,300 copying build/lib.linux-armv7l-3.9/atropos/commands/detect/reports.py -> build/bdist.linux-armv7l/wheel/atropos/commands/detect 2021-07-15T10:43:27,302 copying build/lib.linux-armv7l-3.9/atropos/commands/detect/cli.py -> build/bdist.linux-armv7l/wheel/atropos/commands/detect 2021-07-15T10:43:27,305 copying build/lib.linux-armv7l-3.9/atropos/commands/detect/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/commands/detect 2021-07-15T10:43:27,308 creating build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,309 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/qualtrim.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,312 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/_qualtrim.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,317 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/reports.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,318 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/cli.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,322 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,325 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/filters.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,327 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/multicore.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,329 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/modifiers.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,333 copying build/lib.linux-armv7l-3.9/atropos/commands/trim/writers.py -> build/bdist.linux-armv7l/wheel/atropos/commands/trim 2021-07-15T10:43:27,335 copying build/lib.linux-armv7l-3.9/atropos/__init__.py -> build/bdist.linux-armv7l/wheel/atropos 2021-07-15T10:43:27,337 creating build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,338 copying build/lib.linux-armv7l-3.9/atropos/io/_seqio.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,355 copying build/lib.linux-armv7l-3.9/atropos/io/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,357 copying build/lib.linux-armv7l-3.9/atropos/io/progress.py -> build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,360 copying build/lib.linux-armv7l-3.9/atropos/io/seqio.py -> build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,363 copying build/lib.linux-armv7l-3.9/atropos/io/compression.py -> build/bdist.linux-armv7l/wheel/atropos/io 2021-07-15T10:43:27,365 copying build/lib.linux-armv7l-3.9/atropos/_version.py -> build/bdist.linux-armv7l/wheel/atropos 2021-07-15T10:43:27,368 creating build/bdist.linux-armv7l/wheel/atropos/util 2021-07-15T10:43:27,369 copying build/lib.linux-armv7l-3.9/atropos/util/__init__.py -> build/bdist.linux-armv7l/wheel/atropos/util 2021-07-15T10:43:27,372 copying build/lib.linux-armv7l-3.9/atropos/util/colorspace.py -> build/bdist.linux-armv7l/wheel/atropos/util 2021-07-15T10:43:27,373 running install_egg_info 2021-07-15T10:43:27,393 running egg_info 2021-07-15T10:43:27,394 writing atropos.egg-info/PKG-INFO 2021-07-15T10:43:27,397 writing dependency_links to atropos.egg-info/dependency_links.txt 2021-07-15T10:43:27,399 writing requirements to atropos.egg-info/requires.txt 2021-07-15T10:43:27,400 writing top-level names to atropos.egg-info/top_level.txt 2021-07-15T10:43:27,449 reading manifest file 'atropos.egg-info/SOURCES.txt' 2021-07-15T10:43:27,520 reading manifest template 'MANIFEST.in' 2021-07-15T10:43:27,521 warning: no files found matching 'README.rst' 2021-07-15T10:43:27,521 warning: no files found matching 'LICENSE.txt' 2021-07-15T10:43:27,526 warning: no files found matching 'atropos/report/templates/*' 2021-07-15T10:43:27,536 adding license file 'LICENSE' 2021-07-15T10:43:27,556 writing manifest file 'atropos.egg-info/SOURCES.txt' 2021-07-15T10:43:27,558 Copying atropos.egg-info to build/bdist.linux-armv7l/wheel/atropos-1.1.25-py3.9.egg-info 2021-07-15T10:43:27,570 running install_scripts 2021-07-15T10:43:27,638 creating build/bdist.linux-armv7l/wheel/atropos-1.1.25.data 2021-07-15T10:43:27,638 creating build/bdist.linux-armv7l/wheel/atropos-1.1.25.data/scripts 2021-07-15T10:43:27,639 copying build/scripts-3.9/atropos -> build/bdist.linux-armv7l/wheel/atropos-1.1.25.data/scripts 2021-07-15T10:43:27,641 changing mode of build/bdist.linux-armv7l/wheel/atropos-1.1.25.data/scripts/atropos to 755 2021-07-15T10:43:27,670 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-15T10:43:27,675 creating build/bdist.linux-armv7l/wheel/atropos-1.1.25.dist-info/WHEEL 2021-07-15T10:43:27,678 creating '/tmp/pip-wheel-6nmbwz2y/atropos-1.1.25-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-15T10:43:27,681 adding 'atropos/__init__.py' 2021-07-15T10:43:27,682 adding 'atropos/_version.py' 2021-07-15T10:43:27,688 adding 'atropos/adapters/__init__.py' 2021-07-15T10:43:27,691 adding 'atropos/adapters/sequencing_adapters.fa' 2021-07-15T10:43:27,694 adding 'atropos/align/__init__.py' 2021-07-15T10:43:27,884 adding 'atropos/align/_align.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T10:43:27,893 adding 'atropos/commands/__init__.py' 2021-07-15T10:43:27,895 adding 'atropos/commands/base.py' 2021-07-15T10:43:27,898 adding 'atropos/commands/cli.py' 2021-07-15T10:43:27,902 adding 'atropos/commands/legacy_report.py' 2021-07-15T10:43:27,904 adding 'atropos/commands/multicore.py' 2021-07-15T10:43:27,906 adding 'atropos/commands/reports.py' 2021-07-15T10:43:27,908 adding 'atropos/commands/stats.py' 2021-07-15T10:43:27,913 adding 'atropos/commands/detect/__init__.py' 2021-07-15T10:43:27,915 adding 'atropos/commands/detect/cli.py' 2021-07-15T10:43:27,917 adding 'atropos/commands/detect/reports.py' 2021-07-15T10:43:27,919 adding 'atropos/commands/error/__init__.py' 2021-07-15T10:43:27,920 adding 'atropos/commands/error/cli.py' 2021-07-15T10:43:27,922 adding 'atropos/commands/error/reports.py' 2021-07-15T10:43:27,924 adding 'atropos/commands/qc/__init__.py' 2021-07-15T10:43:27,925 adding 'atropos/commands/qc/cli.py' 2021-07-15T10:43:27,926 adding 'atropos/commands/qc/reports.py' 2021-07-15T10:43:27,931 adding 'atropos/commands/trim/__init__.py' 2021-07-15T10:43:27,956 adding 'atropos/commands/trim/_qualtrim.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T10:43:27,962 adding 'atropos/commands/trim/cli.py' 2021-07-15T10:43:27,964 adding 'atropos/commands/trim/filters.py' 2021-07-15T10:43:27,969 adding 'atropos/commands/trim/modifiers.py' 2021-07-15T10:43:27,971 adding 'atropos/commands/trim/multicore.py' 2021-07-15T10:43:27,972 adding 'atropos/commands/trim/qualtrim.py' 2021-07-15T10:43:27,974 adding 'atropos/commands/trim/reports.py' 2021-07-15T10:43:27,975 adding 'atropos/commands/trim/writers.py' 2021-07-15T10:43:27,977 adding 'atropos/io/__init__.py' 2021-07-15T10:43:28,126 adding 'atropos/io/_seqio.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T10:43:28,133 adding 'atropos/io/compression.py' 2021-07-15T10:43:28,135 adding 'atropos/io/progress.py' 2021-07-15T10:43:28,140 adding 'atropos/io/seqio.py' 2021-07-15T10:43:28,143 adding 'atropos/util/__init__.py' 2021-07-15T10:43:28,145 adding 'atropos/util/colorspace.py' 2021-07-15T10:43:28,147 adding 'atropos-1.1.25.data/scripts/atropos' 2021-07-15T10:43:28,150 adding 'tests/__init__.py' 2021-07-15T10:43:28,151 adding 'tests/test_adapters.py' 2021-07-15T10:43:28,153 adding 'tests/test_align.py' 2021-07-15T10:43:28,156 adding 'tests/test_atropos.py' 2021-07-15T10:43:28,158 adding 'tests/test_colorspace.py' 2021-07-15T10:43:28,159 adding 'tests/test_commands.py' 2021-07-15T10:43:28,160 adding 'tests/test_filters.py' 2021-07-15T10:43:28,163 adding 'tests/test_modifiers.py' 2021-07-15T10:43:28,165 adding 'tests/test_multicore.py' 2021-07-15T10:43:28,167 adding 'tests/test_paired.py' 2021-07-15T10:43:28,169 adding 'tests/test_qualtrim.py' 2021-07-15T10:43:28,171 adding 'tests/test_seqio.py' 2021-07-15T10:43:28,172 adding 'tests/test_trim.py' 2021-07-15T10:43:28,174 adding 'tests/test_xopen.py' 2021-07-15T10:43:28,175 adding 'tests/utils.py' 2021-07-15T10:43:28,176 adding 'atropos-1.1.25.dist-info/LICENSE' 2021-07-15T10:43:28,178 adding 'atropos-1.1.25.dist-info/METADATA' 2021-07-15T10:43:28,179 adding 'atropos-1.1.25.dist-info/WHEEL' 2021-07-15T10:43:28,180 adding 'atropos-1.1.25.dist-info/top_level.txt' 2021-07-15T10:43:28,182 adding 'atropos-1.1.25.dist-info/RECORD' 2021-07-15T10:43:28,197 removing build/bdist.linux-armv7l/wheel 2021-07-15T10:43:28,309 Building wheel for atropos (setup.py): finished with status 'done' 2021-07-15T10:43:28,324 Created wheel for atropos: filename=atropos-1.1.25-cp39-cp39-linux_armv7l.whl size=768243 sha256=dbc59bc9d798cbe99edd1ce4012a5b05d77a40eea7216ab62610c337d89ec052 2021-07-15T10:43:28,325 Stored in directory: /tmp/pip-ephem-wheel-cache-iklcy16j/wheels/e4/ff/01/853e00d790f59f8ea98b94693f79c30869d6561fb5b78d4d19 2021-07-15T10:43:28,341 Successfully built atropos 2021-07-15T10:43:28,375 Removed build tracker: '/tmp/pip-req-tracker-v7sgmas5'