2021-07-15T15:46:15,183 Created temporary directory: /tmp/pip-ephem-wheel-cache-gwwrpiqu 2021-07-15T15:46:15,187 Created temporary directory: /tmp/pip-req-tracker-gqkzxv_e 2021-07-15T15:46:15,187 Initialized build tracking at /tmp/pip-req-tracker-gqkzxv_e 2021-07-15T15:46:15,187 Created build tracker: /tmp/pip-req-tracker-gqkzxv_e 2021-07-15T15:46:15,188 Entered build tracker: /tmp/pip-req-tracker-gqkzxv_e 2021-07-15T15:46:15,188 Created temporary directory: /tmp/pip-wheel-2ra_xz32 2021-07-15T15:46:15,217 1 location(s) to search for versions of mgkit: 2021-07-15T15:46:15,217 * https://pypi.org/simple/mgkit/ 2021-07-15T15:46:15,218 Fetching project page and analyzing links: https://pypi.org/simple/mgkit/ 2021-07-15T15:46:15,218 Getting page https://pypi.org/simple/mgkit/ 2021-07-15T15:46:15,220 Found index url https://pypi.org/simple 2021-07-15T15:46:15,422 Found link https://files.pythonhosted.org/packages/79/a0/40ef7592a18a3a15ed08222e5ee8aea3632821585918dc4b7f82a6ba9f8c/mgkit-0.1.10.tar.gz#sha256=cb221a732000713fd1b8b7e0a9c27fcf627d84ccd4a8f436b219de6ef663f40c (from https://pypi.org/simple/mgkit/), version: 0.1.10 2021-07-15T15:46:15,422 Found link https://files.pythonhosted.org/packages/91/57/15b259097a455e4d5c2b89fe2218f3cbdb1eae0e0dd861759f3e09d968ce/mgkit-0.1.11.tar.gz#sha256=03961e790667cbdef223e426e26c4a8bb134f1c97fd94b37b1381dbc8dd071d4 (from https://pypi.org/simple/mgkit/), version: 0.1.11 2021-07-15T15:46:15,423 Found link https://files.pythonhosted.org/packages/87/d8/bdb7fc80e9ab0953c76290a706f7042ebf5139dc5f74968bab1cbcaf01c0/mgkit-0.1.12.tar.gz#sha256=0927dbf3a5312c921b5e5f56901a3e1a7ef4f23b6407f72aced47418b85e6028 (from https://pypi.org/simple/mgkit/), version: 0.1.12 2021-07-15T15:46:15,423 Found link 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tags (py2-none-any) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/7c/36/2991fd0a032c8e7f7dae0b33a7139148df149968409c445e54bc8e0380b1/mgkit-0.2.3-py2-none-any.whl#sha256=b80dd8ce8e4c5f7a755ceded51d60810a5e58560ae6221d2e6411d83e83a64e1 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,445 Found link https://files.pythonhosted.org/packages/f7/14/88dd1e83833dba85b017f4fccba17ade03707347bf77bb88f3c8c48d16dc/mgkit-0.2.3.macosx-10.11-intel.tar.gz#sha256=1ea940960fd3fef9fab61ef66e78462f8c96eb7fd01582cb57a9f7080715178c (from https://pypi.org/simple/mgkit/), version: 0.2.3.macosx-10.11-intel 2021-07-15T15:46:15,445 Found link https://files.pythonhosted.org/packages/50/3c/43f9fb982f43d1cf5ffb9906c6e122e215c088c712f8fb6c7cc6a97e572f/mgkit-0.2.3.tar.gz#sha256=d679d048e9500f088c305bdef350af43fc7830b029dc7c4f0c5ef3799b04648a (from https://pypi.org/simple/mgkit/), version: 0.2.3 2021-07-15T15:46:15,446 Skipping link: none of the wheel's tags (py2-none-any) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5b/e5/4798a81b8912de65332fed4de0ddf46a0ad22787928f59fe70a5aedcece5/mgkit-0.2.4-py2-none-any.whl#sha256=632ef692699c2ee53e2d82a03100e8a53966705f6b33d11ea3157282646bd80e (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,446 Found link https://files.pythonhosted.org/packages/dd/79/b808c7db6e8f3d5a414219ab18d1bf43ee049be3cc48c38462dc582bafc6/mgkit-0.2.4.macosx-10.11-intel.tar.gz#sha256=db24fbb3cd8020c51da073ce6eec1b9379f99fb7f616d427203ce4800ed99fd3 (from https://pypi.org/simple/mgkit/), version: 0.2.4.macosx-10.11-intel 2021-07-15T15:46:15,446 Found link https://files.pythonhosted.org/packages/7b/7b/a015ad8e0d60135088f4cedaf750e7bd789189b4e1b9384a4c1022923710/mgkit-0.2.4.tar.gz#sha256=3c8278d3671242255ad89c1122a0e12edb596997bd58e3e181e74b5964e94f4e (from https://pypi.org/simple/mgkit/), version: 0.2.4 2021-07-15T15:46:15,447 Skipping link: none of the wheel's tags (py2-none-any) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/50/19/be4c1d3d8fce83f594a69af6f9098ee3efb59d6ef7988e3cf9262b8f753b/mgkit-0.2.5-py2-none-any.whl#sha256=c48123143f9cca6c158a9a9de41f8b7b82d6f58bfc717f46b2830bda2ccf2776 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,447 Found link https://files.pythonhosted.org/packages/e6/7d/093121f7d6921d0203c678fb566dadfe3d9442bee23800b655f045060ed7/mgkit-0.2.5.macosx-10.11-intel.tar.gz#sha256=13926193d29720e9e6dd242b290453c0093be67629087b51f398fa29992af2c6 (from https://pypi.org/simple/mgkit/), version: 0.2.5.macosx-10.11-intel 2021-07-15T15:46:15,447 Found link https://files.pythonhosted.org/packages/56/8b/c848c8af1b4affa444c5a72362e7cee472ad28f948dfc9af147770ff2cde/mgkit-0.2.5.tar.gz#sha256=bcb15ea755a7afab1c3291ce9afd9e3467429cbe29b5e92890e6a7d28326f2f8 (from https://pypi.org/simple/mgkit/), version: 0.2.5 2021-07-15T15:46:15,448 Skipping link: none of the wheel's tags (py2-none-any) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/51/9f/0009ca2558c00693d16a21914466edaf46a7ccb26dda9b0c6cfe0f8f96e3/mgkit-0.3.0-py2-none-any.whl#sha256=ef5831c86d2807d4b8a43f51bb58e97f6b6fbb092a7aaee0df4ab294c08862f0 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,448 Found link https://files.pythonhosted.org/packages/4a/59/7c098894b744f8f938eae8401f37bafda7460416a674a39d3c31a19dc49d/mgkit-0.3.0.macosx-10.11-intel.tar.gz#sha256=ab8705e2e89dfca72142008cb8d507df405f1fdc4dbef24aad285159dc2c4ada (from https://pypi.org/simple/mgkit/), version: 0.3.0.macosx-10.11-intel 2021-07-15T15:46:15,448 Found link https://files.pythonhosted.org/packages/bd/2b/a227340be64f3ab18ee4e864b87803f1f613bb700f355bcefd6ea20d3680/mgkit-0.3.0.tar.gz#sha256=07738f5bcaf94ea94696ed34852b1f8837012dd3b584349d1b131c21e8e87bfd (from https://pypi.org/simple/mgkit/), version: 0.3.0 2021-07-15T15:46:15,449 Skipping link: none of the wheel's tags (cp27-none-macosx_10_11_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e3/11/1e96964180416f118726ff9681ab45e8651464333bfd295f8085e02e7d38/mgkit-0.3.2-cp27-none-macosx_10_11_intel.whl#sha256=cc1866b20fd71ad829f21e6d69becc8d874d104121681e736be087829554c8d3 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,449 Found link https://files.pythonhosted.org/packages/28/2d/6e7b11f026942135e101890bc7b649e55ca8bad5115c7c5013b17af1b799/mgkit-0.3.2.tar.gz#sha256=dc49bf1ab983528a5673c4a0f1fb9a36d80e0f3cfcb22088d3c5300e85d97a26 (from https://pypi.org/simple/mgkit/), version: 0.3.2 2021-07-15T15:46:15,449 Found link https://files.pythonhosted.org/packages/dc/b1/b5133106dda33d9726afc858f3ef47ad51391ec2e43731510fc8af478296/mgkit-0.3.3.tar.gz#sha256=d9104d0c4113e3efafc140ff2e7af634fa2448c7e2584e17e66fea4d8105092a (from https://pypi.org/simple/mgkit/), version: 0.3.3 2021-07-15T15:46:15,450 Found link https://files.pythonhosted.org/packages/f3/fe/ac6168cb5a6bf676cdb18e304a00aea88434422c94a3211fff4e80f8b9a3/mgkit-0.3.4.tar.gz#sha256=635d6b8c6874492925635ac7bf8d2bddf12dd5cb5a5cc8d7aac008e20f7c5941 (from https://pypi.org/simple/mgkit/), version: 0.3.4 2021-07-15T15:46:15,450 Found link https://files.pythonhosted.org/packages/55/e8/542cb162422510002792bf2c9a95665f071879f6e6daf6b6a6019ec4747a/mgkit-0.4.0.tar.gz#sha256=17364ca56eac62ce3313f18fe3059267bf177b5fb855332995c8f740bd74c3b4 (from https://pypi.org/simple/mgkit/), version: 0.4.0 2021-07-15T15:46:15,450 Found link https://files.pythonhosted.org/packages/32/36/049aa9750da61265b729628942d7857f883e04f0c904d3d2dc658625ee70/mgkit-0.4.1.tar.gz#sha256=33a1f83130e3a93ca767cfa61a63abb6dc360882dfd7907a27ce5ab4969af8fe (from https://pypi.org/simple/mgkit/), version: 0.4.1 2021-07-15T15:46:15,451 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/7c/60/4651f7cd1eab088917fed5cc5abc90b6190d7597979c97184d5b41ecefc8/mgkit-0.4.2-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b330ee1acce3f92bfaea9af76cf81f667126f9a8faf20a693f89b55a2a55e244 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,451 Found link https://files.pythonhosted.org/packages/24/97/ae8e3503289e7d05308575222b95922eaf93534d8b1055ea911e41553f02/mgkit-0.4.2.tar.gz#sha256=7bdd19ab58618a5cb6e1c275d0b93adff84a329a0fe9da071ed4c35eab92d325 (from https://pypi.org/simple/mgkit/), version: 0.4.2 2021-07-15T15:46:15,451 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/52/59/2acaae952375b323d339d489d5526d8fdcd09cd650da57050f9af40fee6a/mgkit-0.4.3-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=ce2ec99bf762d8feb9e1fadd59436192107107c53b050ea6977b2789d1bf1499 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,452 Found link https://files.pythonhosted.org/packages/1e/6e/9bacfeee743cccc4b7b0504eea4b79a19c5104ea647240b0a1781265efe3/mgkit-0.4.3.tar.gz#sha256=8b4276ffbe3a25bd296cbcba866610fccee1257cf16d69e8e6813dc49c0b4a89 (from https://pypi.org/simple/mgkit/), version: 0.4.3 2021-07-15T15:46:15,452 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/13/a3/6d260cf0ec7aeb5f7739bbc08a682a05d0c758be62823b3f4b0c50973d6f/mgkit-0.5.0-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=75d4d527e6744e689cf910ae6cb452c4b077bc5dee3667cd06cec6ffab0afdac (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,452 Found link https://files.pythonhosted.org/packages/c7/f5/71856cbc1598e7d04a8636c158df2f5e07f2e75de908782a30faf975dce5/mgkit-0.5.0.tar.gz#sha256=98c757ecc2b640adbeb27563535f4f218dae65646bf8b20e947388fa3735ee77 (from https://pypi.org/simple/mgkit/), version: 0.5.0 2021-07-15T15:46:15,453 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/45/60/4151bf950a55bc4a3ec463590eb1c1b5f19a709c2888c6b431d15bf6fa65/mgkit-0.5.1-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=7d060198311bd9d1210a6b0973ba81aa82bcbf98808341d1d582cc9c06d2e814 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,453 Found link https://files.pythonhosted.org/packages/4b/c7/7477ef3c06b3cebd434305f0a15badf6be9697dbac4034e7dfb9864a031e/mgkit-0.5.1.tar.gz#sha256=0c9d51396f0f0074639d2a467c92f8a4bddaa7dead652896311e8e661d802705 (from https://pypi.org/simple/mgkit/), version: 0.5.1 2021-07-15T15:46:15,454 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/03/68/56e2a61d2173b70764f1e74a4f2845f761506d105d372cc6e0446b25aff4/mgkit-0.5.2-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=8b0c81ecbd0b68ec1fc92b6a75f17780f731eec4b7e138d5199b05c5e9c0e5c3 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,454 Found link https://files.pythonhosted.org/packages/5d/f0/502390012e7d6ee3116745103845b46308982bebc71ce03ad4a0cc8eaddd/mgkit-0.5.2.tar.gz#sha256=09b651f16f574d2e2035d38c1ebfcda831e003879a3610ee159e56bbc5c9f525 (from https://pypi.org/simple/mgkit/), version: 0.5.2 2021-07-15T15:46:15,454 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6b/63/5da8ebd4fbd4bc8da9e4781cb081b0d7ca4ebab8695d557b932c44764469/mgkit-0.5.3-cp38-cp38-macosx_10_9_x86_64.whl#sha256=6fa9bfbd846f3af280c584da0063aa7edadd8f985144022201d223dab652457c (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,455 Found link https://files.pythonhosted.org/packages/b4/16/8bc71a99d55881d31d80a8de2a4c38bae06f52fcbe1ebf1aacafae5b096d/mgkit-0.5.3.tar.gz#sha256=391e97a40ecd74a4d07d179be563c38fb6158e79727863db890cea87e139b9e4 (from https://pypi.org/simple/mgkit/), version: 0.5.3 2021-07-15T15:46:15,455 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/db/b1/02cdce1781c53d7f71fec5f1fd6f23de735127037783fc6d12e1ae7ae535/mgkit-0.5.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=99a0c8f70265ca2272497ff6dd2f57516d71d36508324a7180e0b901abcad530 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,455 Found link https://files.pythonhosted.org/packages/74/80/25255ea4d63da6108f297c5764d555ac81f1ddea90bd85ded6e6bdb3eded/mgkit-0.5.4.tar.gz#sha256=dae7e72dd3fab98328b9b26969088716dbf8245be61fb6495f55459bc608b25b (from https://pypi.org/simple/mgkit/), version: 0.5.4 2021-07-15T15:46:15,456 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/62/52/68c5b85d4f8a14a8db73c5b73c151adefd15b07d1c1aec2a9ccf72b5c2ad/mgkit-0.5.5-cp38-cp38-macosx_10_9_x86_64.whl#sha256=b6b7c04baf27df8251334f126bb59d41f2eeac58872612ab20b631e5dda2e5cb (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,456 Found link https://files.pythonhosted.org/packages/11/cd/aafab787514f3b2b61fbf03f2cd415c4b4e38455c863aacae6e9655de0b3/mgkit-0.5.5.tar.gz#sha256=ff53d622ddc7d6c2e9d1355b68b80879e7e3f56eeb8fe2c59704ef231ab80922 (from https://pypi.org/simple/mgkit/), version: 0.5.5 2021-07-15T15:46:15,457 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/38/08/a9bb0df31aee34219a48c48b3b167e5ec2a45639f7cb04b8ebf97a2f6d2b/mgkit-0.5.6-cp38-cp38-macosx_10_9_x86_64.whl#sha256=d28937d2713456f464c9a52badf36146238821c0e2f8278221bd2268ccb302d4 (from https://pypi.org/simple/mgkit/) 2021-07-15T15:46:15,457 Found link https://files.pythonhosted.org/packages/52/8b/4917c3f4572d5413771b360286ca880ad3bd01b682b436b51c7d8cf04e63/mgkit-0.5.6.tar.gz#sha256=5cc88cd04280e3d078b42da2dc8635b7e702680a1bedb7d3bdf9746a3a63a394 (from https://pypi.org/simple/mgkit/), version: 0.5.6 2021-07-15T15:46:15,457 Skipping link: not a file: https://pypi.org/simple/mgkit/ 2021-07-15T15:46:15,463 Given no hashes to check 1 links for project 'mgkit': discarding no candidates 2021-07-15T15:46:15,482 Collecting mgkit==0.4.2 2021-07-15T15:46:15,484 Created temporary directory: /tmp/pip-unpack-222v3tf4 2021-07-15T15:46:18,917 Downloading mgkit-0.4.2.tar.gz (11.6 MB) 2021-07-15T15:46:21,231 Added mgkit==0.4.2 from https://files.pythonhosted.org/packages/24/97/ae8e3503289e7d05308575222b95922eaf93534d8b1055ea911e41553f02/mgkit-0.4.2.tar.gz#sha256=7bdd19ab58618a5cb6e1c275d0b93adff84a329a0fe9da071ed4c35eab92d325 to build tracker '/tmp/pip-req-tracker-gqkzxv_e' 2021-07-15T15:46:21,232 Running setup.py (path:/tmp/pip-wheel-2ra_xz32/mgkit_61c672758e6d4a1bb125bf04fd9bd57c/setup.py) egg_info for package mgkit 2021-07-15T15:46:21,232 Created temporary directory: /tmp/pip-pip-egg-info-9uzh3e1b 2021-07-15T15:46:21,233 Running command python setup.py egg_info 2021-07-15T15:46:22,378 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead 2021-07-15T15:46:22,379 warnings.warn( 2021-07-15T15:46:22,617 running egg_info 2021-07-15T15:46:22,619 creating /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info 2021-07-15T15:46:22,620 writing /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/PKG-INFO 2021-07-15T15:46:22,622 writing dependency_links to /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/dependency_links.txt 2021-07-15T15:46:22,624 writing entry points to /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/entry_points.txt 2021-07-15T15:46:22,626 writing requirements to /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/requires.txt 2021-07-15T15:46:22,627 writing top-level names to /tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/top_level.txt 2021-07-15T15:46:22,628 writing manifest file '/tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/SOURCES.txt' 2021-07-15T15:46:22,990 reading manifest file '/tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/SOURCES.txt' 2021-07-15T15:46:22,993 reading manifest template 'MANIFEST.in' 2021-07-15T15:46:23,060 warning: no previously-included files matching '*' found under directory 'docs/build' 2021-07-15T15:46:23,105 warning: no previously-included files matching '*' found under directory 'tests/mg_data' 2021-07-15T15:46:23,107 warning: no previously-included files matching '*.gz' found under directory 'docs/source/examples/db' 2021-07-15T15:46:23,108 warning: no previously-included files matching 'asse*' found under directory 'docs/source/examples/db' 2021-07-15T15:46:23,109 warning: no previously-included files matching 'gff-dbm' found under directory 'docs/source/examples/db' 2021-07-15T15:46:23,110 warning: no previously-included files matching '.DS_Store' found under directory 'docs' 2021-07-15T15:46:23,110 warning: no previously-included files matching '__MACOSX' found under directory '.' 2021-07-15T15:46:23,112 warning: no previously-included files matching 'tutorial-*data*' found under directory 'docs/source/pipeline/' 2021-07-15T15:46:23,124 writing manifest file '/tmp/pip-pip-egg-info-9uzh3e1b/mgkit.egg-info/SOURCES.txt' 2021-07-15T15:46:23,211 Source in /tmp/pip-wheel-2ra_xz32/mgkit_61c672758e6d4a1bb125bf04fd9bd57c has version 0.4.2, which satisfies requirement mgkit==0.4.2 from https://files.pythonhosted.org/packages/24/97/ae8e3503289e7d05308575222b95922eaf93534d8b1055ea911e41553f02/mgkit-0.4.2.tar.gz#sha256=7bdd19ab58618a5cb6e1c275d0b93adff84a329a0fe9da071ed4c35eab92d325 2021-07-15T15:46:23,212 Removed mgkit==0.4.2 from https://files.pythonhosted.org/packages/24/97/ae8e3503289e7d05308575222b95922eaf93534d8b1055ea911e41553f02/mgkit-0.4.2.tar.gz#sha256=7bdd19ab58618a5cb6e1c275d0b93adff84a329a0fe9da071ed4c35eab92d325 from build tracker '/tmp/pip-req-tracker-gqkzxv_e' 2021-07-15T15:46:23,217 Created temporary directory: /tmp/pip-unpack-wwmrwsl1 2021-07-15T15:46:23,217 Building wheels for collected packages: mgkit 2021-07-15T15:46:23,221 Created temporary directory: /tmp/pip-wheel-42axampk 2021-07-15T15:46:23,222 Building wheel for mgkit (setup.py): started 2021-07-15T15:46:23,222 Destination directory: /tmp/pip-wheel-42axampk 2021-07-15T15:46:23,222 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2ra_xz32/mgkit_61c672758e6d4a1bb125bf04fd9bd57c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2ra_xz32/mgkit_61c672758e6d4a1bb125bf04fd9bd57c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-42axampk 2021-07-15T15:46:24,349 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead 2021-07-15T15:46:24,350 warnings.warn( 2021-07-15T15:46:24,613 running bdist_wheel 2021-07-15T15:46:24,778 running build 2021-07-15T15:46:24,779 running build_py 2021-07-15T15:46:24,920 creating build 2021-07-15T15:46:24,920 creating build/lib.linux-armv7l-3.9 2021-07-15T15:46:24,921 creating build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,922 copying mgkit/logger.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,924 copying mgkit/taxon.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,927 copying mgkit/align.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,929 copying mgkit/graphs.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,931 copying mgkit/kegg.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,934 copying mgkit/__init__.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,936 copying mgkit/simple_cache.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,938 copying mgkit/consts.py -> build/lib.linux-armv7l-3.9/mgkit 2021-07-15T15:46:24,940 creating build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,941 copying mgkit/snps/mapper.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,943 copying mgkit/snps/classes.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,946 copying mgkit/snps/filter.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,948 copying mgkit/snps/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,950 copying mgkit/snps/conv_func.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,952 copying mgkit/snps/funcs.py -> build/lib.linux-armv7l-3.9/mgkit/snps 2021-07-15T15:46:24,956 creating build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,957 copying mgkit/workflow/blast2gff.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,959 copying mgkit/workflow/sampling_utils.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,962 copying mgkit/workflow/filter_gff.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,965 copying mgkit/workflow/fastq_utils.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,967 copying mgkit/workflow/utils.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,969 copying mgkit/workflow/fasta_utils.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,971 copying mgkit/workflow/snp_parser.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,974 copying mgkit/workflow/hmmer2gff.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,977 copying mgkit/workflow/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,978 copying mgkit/workflow/extract_gff_info.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,981 copying mgkit/workflow/json2gff.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,983 copying mgkit/workflow/add_gff_info.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,987 copying mgkit/workflow/taxon_utils.py -> build/lib.linux-armv7l-3.9/mgkit/workflow 2021-07-15T15:46:24,990 creating build/lib.linux-armv7l-3.9/mgkit/db 2021-07-15T15:46:24,991 copying mgkit/db/mongo.py -> build/lib.linux-armv7l-3.9/mgkit/db 2021-07-15T15:46:24,994 copying mgkit/db/dbm.py -> build/lib.linux-armv7l-3.9/mgkit/db 2021-07-15T15:46:24,996 copying mgkit/db/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/db 2021-07-15T15:46:24,998 creating build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:24,999 copying mgkit/net/utils.py -> build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:25,001 copying mgkit/net/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:25,003 copying mgkit/net/uniprot.py -> build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:25,006 copying mgkit/net/embl.py -> build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:25,008 copying mgkit/net/pfam.py -> build/lib.linux-armv7l-3.9/mgkit/net 2021-07-15T15:46:25,011 creating build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,012 copying mgkit/filter/taxon.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,014 copying mgkit/filter/reads.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,016 copying mgkit/filter/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,018 copying mgkit/filter/gff.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,020 copying mgkit/filter/lists.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,022 copying mgkit/filter/common.py -> build/lib.linux-armv7l-3.9/mgkit/filter 2021-07-15T15:46:25,025 creating build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,026 copying mgkit/io/fasta.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,028 copying mgkit/io/snpdat.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,031 copying mgkit/io/fastq.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,033 copying mgkit/io/utils.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,036 copying mgkit/io/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,038 copying mgkit/io/uniprot.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,040 copying mgkit/io/gff.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,044 copying mgkit/io/glimmer.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,046 copying mgkit/io/blast.py -> build/lib.linux-armv7l-3.9/mgkit/io 2021-07-15T15:46:25,049 creating build/lib.linux-armv7l-3.9/mgkit/counts 2021-07-15T15:46:25,050 copying mgkit/counts/glm.py -> build/lib.linux-armv7l-3.9/mgkit/counts 2021-07-15T15:46:25,052 copying mgkit/counts/func.py -> build/lib.linux-armv7l-3.9/mgkit/counts 2021-07-15T15:46:25,055 copying mgkit/counts/scaling.py -> build/lib.linux-armv7l-3.9/mgkit/counts 2021-07-15T15:46:25,057 copying mgkit/counts/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/counts 2021-07-15T15:46:25,060 creating build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,064 copying mgkit/utils/dictionary.py -> build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,067 copying mgkit/utils/trans_tables.py -> build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,069 copying mgkit/utils/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,070 copying mgkit/utils/common.py -> build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,073 copying mgkit/utils/sequence.py -> build/lib.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,077 creating build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,078 copying mgkit/mappings/enzyme.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,081 copying mgkit/mappings/taxon.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,083 copying mgkit/mappings/pandas_map.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,085 copying mgkit/mappings/utils.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,087 copying mgkit/mappings/go.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,089 copying mgkit/mappings/eggnog.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,091 copying mgkit/mappings/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,093 copying mgkit/mappings/cazy.py -> build/lib.linux-armv7l-3.9/mgkit/mappings 2021-07-15T15:46:25,096 creating build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,097 copying mgkit/plots/heatmap.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,099 copying mgkit/plots/unused.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,102 copying mgkit/plots/utils.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,104 copying mgkit/plots/colors.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,105 copying mgkit/plots/__init__.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,107 copying mgkit/plots/abund.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,109 copying mgkit/plots/boxplot.py -> build/lib.linux-armv7l-3.9/mgkit/plots 2021-07-15T15:46:25,122 running build_ext 2021-07-15T15:46:25,129 building 'mgkit.utils._sequence' extension 2021-07-15T15:46:25,130 creating build/temp.linux-armv7l-3.9 2021-07-15T15:46:25,130 creating build/temp.linux-armv7l-3.9/mgkit 2021-07-15T15:46:25,131 creating build/temp.linux-armv7l-3.9/mgkit/utils 2021-07-15T15:46:25,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c mgkit/utils/_sequence.c -o build/temp.linux-armv7l-3.9/mgkit/utils/_sequence.o 2021-07-15T15:46:25,586 mgkit/utils/_sequence.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T15:46:25,589 mgkit/utils/_sequence.c:5143:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,589 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,589 | ^ 2021-07-15T15:46:25,590 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,590 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,590 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,590 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,590 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,590 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,593 mgkit/utils/_sequence.c:5143:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,593 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,593 | ^ 2021-07-15T15:46:25,593 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,593 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,593 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,593 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T15:46:25,594 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T15:46:25,594 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,596 mgkit/utils/_sequence.c:5143:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,596 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,596 | ^ 2021-07-15T15:46:25,596 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,596 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,596 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,596 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,597 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,597 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,599 mgkit/utils/_sequence.c:5143:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,599 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,599 | ^ 2021-07-15T15:46:25,599 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,599 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,599 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,600 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,600 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,600 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,602 mgkit/utils/_sequence.c:5143:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,602 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,602 | ^ 2021-07-15T15:46:25,602 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,602 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,602 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,603 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T15:46:25,603 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T15:46:25,603 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,605 mgkit/utils/_sequence.c:5143:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,605 5143 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,605 | ^ 2021-07-15T15:46:25,605 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,606 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,606 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,606 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,606 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,606 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,609 mgkit/utils/_sequence.c:5159:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,609 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,609 | ^ 2021-07-15T15:46:25,609 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,610 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,610 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,610 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,610 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,610 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,612 mgkit/utils/_sequence.c:5159:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,612 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,612 | ^ 2021-07-15T15:46:25,612 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,612 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,613 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,613 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T15:46:25,613 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T15:46:25,613 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,615 mgkit/utils/_sequence.c:5159:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,615 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,615 | ^ 2021-07-15T15:46:25,615 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,616 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,616 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,616 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,616 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,616 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,618 mgkit/utils/_sequence.c:5159:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,618 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,618 | ^ 2021-07-15T15:46:25,619 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,619 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,619 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,619 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,619 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,621 mgkit/utils/_sequence.c:5159:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,621 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,621 | ^ 2021-07-15T15:46:25,622 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,622 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,622 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,622 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T15:46:25,622 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T15:46:25,622 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:25,624 mgkit/utils/_sequence.c:5159:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T15:46:25,624 5159 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T15:46:25,625 | ^ 2021-07-15T15:46:25,625 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T15:46:25,625 from /usr/include/python3.9/Python.h:97, 2021-07-15T15:46:25,625 from mgkit/utils/_sequence.c:16: 2021-07-15T15:46:25,625 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T15:46:25,625 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T15:46:25,625 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T15:46:32,234 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mgkit/utils/_sequence.o -o build/lib.linux-armv7l-3.9/mgkit/utils/_sequence.cpython-39-arm-linux-gnueabihf.so 2021-07-15T15:46:32,361 running build_scripts 2021-07-15T15:46:32,361 creating build/scripts-3.9 2021-07-15T15:46:32,363 copying scripts/download-taxonomy.sh -> build/scripts-3.9 2021-07-15T15:46:32,365 copying scripts/download-uniprot-taxa.sh -> build/scripts-3.9 2021-07-15T15:46:32,367 copying scripts/download-ncbi-taxa.sh -> build/scripts-3.9 2021-07-15T15:46:32,369 copying scripts/sort-gff.sh -> build/scripts-3.9 2021-07-15T15:46:32,370 changing mode of build/scripts-3.9/sort-gff.sh from 644 to 755 2021-07-15T15:46:32,380 installing to build/bdist.linux-armv7l/wheel 2021-07-15T15:46:32,380 running install 2021-07-15T15:46:32,382 running install_lib 2021-07-15T15:46:32,387 creating build/bdist.linux-armv7l 2021-07-15T15:46:32,388 creating build/bdist.linux-armv7l/wheel 2021-07-15T15:46:32,390 creating build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,391 copying build/lib.linux-armv7l-3.9/mgkit/logger.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,394 creating build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,395 copying build/lib.linux-armv7l-3.9/mgkit/snps/mapper.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,397 copying build/lib.linux-armv7l-3.9/mgkit/snps/classes.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,399 copying build/lib.linux-armv7l-3.9/mgkit/snps/filter.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,401 copying build/lib.linux-armv7l-3.9/mgkit/snps/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,403 copying build/lib.linux-armv7l-3.9/mgkit/snps/conv_func.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,405 copying build/lib.linux-armv7l-3.9/mgkit/snps/funcs.py -> build/bdist.linux-armv7l/wheel/mgkit/snps 2021-07-15T15:46:32,408 copying build/lib.linux-armv7l-3.9/mgkit/taxon.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,411 creating build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,412 copying build/lib.linux-armv7l-3.9/mgkit/workflow/blast2gff.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,415 copying build/lib.linux-armv7l-3.9/mgkit/workflow/sampling_utils.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,417 copying build/lib.linux-armv7l-3.9/mgkit/workflow/filter_gff.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,420 copying build/lib.linux-armv7l-3.9/mgkit/workflow/fastq_utils.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,423 copying build/lib.linux-armv7l-3.9/mgkit/workflow/utils.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,425 copying build/lib.linux-armv7l-3.9/mgkit/workflow/fasta_utils.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,427 copying build/lib.linux-armv7l-3.9/mgkit/workflow/snp_parser.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,430 copying build/lib.linux-armv7l-3.9/mgkit/workflow/hmmer2gff.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,432 copying build/lib.linux-armv7l-3.9/mgkit/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,434 copying build/lib.linux-armv7l-3.9/mgkit/workflow/extract_gff_info.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,437 copying build/lib.linux-armv7l-3.9/mgkit/workflow/json2gff.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,439 copying build/lib.linux-armv7l-3.9/mgkit/workflow/add_gff_info.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,443 copying build/lib.linux-armv7l-3.9/mgkit/workflow/taxon_utils.py -> build/bdist.linux-armv7l/wheel/mgkit/workflow 2021-07-15T15:46:32,447 creating build/bdist.linux-armv7l/wheel/mgkit/db 2021-07-15T15:46:32,448 copying build/lib.linux-armv7l-3.9/mgkit/db/mongo.py -> build/bdist.linux-armv7l/wheel/mgkit/db 2021-07-15T15:46:32,451 copying build/lib.linux-armv7l-3.9/mgkit/db/dbm.py -> build/bdist.linux-armv7l/wheel/mgkit/db 2021-07-15T15:46:32,453 copying build/lib.linux-armv7l-3.9/mgkit/db/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/db 2021-07-15T15:46:32,455 copying build/lib.linux-armv7l-3.9/mgkit/align.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,458 copying build/lib.linux-armv7l-3.9/mgkit/graphs.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,461 copying build/lib.linux-armv7l-3.9/mgkit/kegg.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,465 creating build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,466 copying build/lib.linux-armv7l-3.9/mgkit/net/utils.py -> build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,468 copying build/lib.linux-armv7l-3.9/mgkit/net/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,470 copying build/lib.linux-armv7l-3.9/mgkit/net/uniprot.py -> build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,473 copying build/lib.linux-armv7l-3.9/mgkit/net/embl.py -> build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,475 copying build/lib.linux-armv7l-3.9/mgkit/net/pfam.py -> build/bdist.linux-armv7l/wheel/mgkit/net 2021-07-15T15:46:32,478 creating build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,479 copying build/lib.linux-armv7l-3.9/mgkit/filter/taxon.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,481 copying build/lib.linux-armv7l-3.9/mgkit/filter/reads.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,483 copying build/lib.linux-armv7l-3.9/mgkit/filter/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,485 copying build/lib.linux-armv7l-3.9/mgkit/filter/gff.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,487 copying build/lib.linux-armv7l-3.9/mgkit/filter/lists.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,489 copying build/lib.linux-armv7l-3.9/mgkit/filter/common.py -> build/bdist.linux-armv7l/wheel/mgkit/filter 2021-07-15T15:46:32,492 creating build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,493 copying build/lib.linux-armv7l-3.9/mgkit/io/fasta.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,495 copying build/lib.linux-armv7l-3.9/mgkit/io/snpdat.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,498 copying build/lib.linux-armv7l-3.9/mgkit/io/fastq.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,500 copying build/lib.linux-armv7l-3.9/mgkit/io/utils.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,502 copying build/lib.linux-armv7l-3.9/mgkit/io/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,504 copying build/lib.linux-armv7l-3.9/mgkit/io/uniprot.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,506 copying build/lib.linux-armv7l-3.9/mgkit/io/gff.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,511 copying build/lib.linux-armv7l-3.9/mgkit/io/glimmer.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,512 copying build/lib.linux-armv7l-3.9/mgkit/io/blast.py -> build/bdist.linux-armv7l/wheel/mgkit/io 2021-07-15T15:46:32,515 copying build/lib.linux-armv7l-3.9/mgkit/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,517 copying build/lib.linux-armv7l-3.9/mgkit/simple_cache.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,520 creating build/bdist.linux-armv7l/wheel/mgkit/counts 2021-07-15T15:46:32,521 copying build/lib.linux-armv7l-3.9/mgkit/counts/glm.py -> build/bdist.linux-armv7l/wheel/mgkit/counts 2021-07-15T15:46:32,524 copying build/lib.linux-armv7l-3.9/mgkit/counts/func.py -> build/bdist.linux-armv7l/wheel/mgkit/counts 2021-07-15T15:46:32,527 copying build/lib.linux-armv7l-3.9/mgkit/counts/scaling.py -> build/bdist.linux-armv7l/wheel/mgkit/counts 2021-07-15T15:46:32,529 copying build/lib.linux-armv7l-3.9/mgkit/counts/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/counts 2021-07-15T15:46:32,531 creating build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,532 copying build/lib.linux-armv7l-3.9/mgkit/utils/dictionary.py -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,535 copying build/lib.linux-armv7l-3.9/mgkit/utils/trans_tables.py -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,537 copying build/lib.linux-armv7l-3.9/mgkit/utils/_sequence.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,551 copying build/lib.linux-armv7l-3.9/mgkit/utils/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,553 copying build/lib.linux-armv7l-3.9/mgkit/utils/common.py -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,556 copying build/lib.linux-armv7l-3.9/mgkit/utils/sequence.py -> build/bdist.linux-armv7l/wheel/mgkit/utils 2021-07-15T15:46:32,559 creating build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,560 copying build/lib.linux-armv7l-3.9/mgkit/mappings/enzyme.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,562 copying build/lib.linux-armv7l-3.9/mgkit/mappings/taxon.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,564 copying build/lib.linux-armv7l-3.9/mgkit/mappings/pandas_map.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,566 copying build/lib.linux-armv7l-3.9/mgkit/mappings/utils.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,568 copying build/lib.linux-armv7l-3.9/mgkit/mappings/go.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,570 copying build/lib.linux-armv7l-3.9/mgkit/mappings/eggnog.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,572 copying build/lib.linux-armv7l-3.9/mgkit/mappings/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,574 copying build/lib.linux-armv7l-3.9/mgkit/mappings/cazy.py -> build/bdist.linux-armv7l/wheel/mgkit/mappings 2021-07-15T15:46:32,576 creating build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,577 copying build/lib.linux-armv7l-3.9/mgkit/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,580 copying build/lib.linux-armv7l-3.9/mgkit/plots/unused.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,582 copying build/lib.linux-armv7l-3.9/mgkit/plots/utils.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,585 copying build/lib.linux-armv7l-3.9/mgkit/plots/colors.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,586 copying build/lib.linux-armv7l-3.9/mgkit/plots/__init__.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,588 copying build/lib.linux-armv7l-3.9/mgkit/plots/abund.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,591 copying build/lib.linux-armv7l-3.9/mgkit/plots/boxplot.py -> build/bdist.linux-armv7l/wheel/mgkit/plots 2021-07-15T15:46:32,593 copying build/lib.linux-armv7l-3.9/mgkit/consts.py -> build/bdist.linux-armv7l/wheel/mgkit 2021-07-15T15:46:32,595 running install_egg_info 2021-07-15T15:46:32,619 running egg_info 2021-07-15T15:46:32,620 writing mgkit.egg-info/PKG-INFO 2021-07-15T15:46:32,622 writing dependency_links to mgkit.egg-info/dependency_links.txt 2021-07-15T15:46:32,624 writing entry points to mgkit.egg-info/entry_points.txt 2021-07-15T15:46:32,625 writing requirements to mgkit.egg-info/requires.txt 2021-07-15T15:46:32,626 writing top-level names to mgkit.egg-info/top_level.txt 2021-07-15T15:46:32,674 reading manifest file 'mgkit.egg-info/SOURCES.txt' 2021-07-15T15:46:32,705 reading manifest template 'MANIFEST.in' 2021-07-15T15:46:32,782 warning: no previously-included files matching '*' found under directory 'docs/build' 2021-07-15T15:46:32,819 warning: no previously-included files matching '*' found under directory 'tests/mg_data' 2021-07-15T15:46:32,821 warning: no previously-included files matching '*.gz' found under directory 'docs/source/examples/db' 2021-07-15T15:46:32,822 warning: no previously-included files matching 'asse*' found under directory 'docs/source/examples/db' 2021-07-15T15:46:32,823 warning: no previously-included files matching 'gff-dbm' found under directory 'docs/source/examples/db' 2021-07-15T15:46:32,824 warning: no previously-included files matching '.DS_Store' found under directory 'docs' 2021-07-15T15:46:32,825 warning: no previously-included files matching '__MACOSX' found under directory '.' 2021-07-15T15:46:32,827 warning: no previously-included files matching 'tutorial-*data*' found under directory 'docs/source/pipeline/' 2021-07-15T15:46:32,842 writing manifest file 'mgkit.egg-info/SOURCES.txt' 2021-07-15T15:46:32,844 Copying mgkit.egg-info to build/bdist.linux-armv7l/wheel/mgkit-0.4.2-py3.9.egg-info 2021-07-15T15:46:32,857 running install_scripts 2021-07-15T15:46:32,941 creating build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data 2021-07-15T15:46:32,941 creating build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts 2021-07-15T15:46:32,942 copying build/scripts-3.9/download-uniprot-taxa.sh -> build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts 2021-07-15T15:46:32,945 copying build/scripts-3.9/download-taxonomy.sh -> build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts 2021-07-15T15:46:32,946 copying build/scripts-3.9/sort-gff.sh -> build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts 2021-07-15T15:46:32,948 copying build/scripts-3.9/download-ncbi-taxa.sh -> build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts 2021-07-15T15:46:32,949 changing mode of build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts/download-uniprot-taxa.sh to 755 2021-07-15T15:46:32,950 changing mode of build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts/download-taxonomy.sh to 755 2021-07-15T15:46:32,950 changing mode of build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts/sort-gff.sh to 755 2021-07-15T15:46:32,950 changing mode of build/bdist.linux-armv7l/wheel/mgkit-0.4.2.data/scripts/download-ncbi-taxa.sh to 755 2021-07-15T15:46:32,993 creating build/bdist.linux-armv7l/wheel/mgkit-0.4.2.dist-info/WHEEL 2021-07-15T15:46:32,995 creating '/tmp/pip-wheel-42axampk/mgkit-0.4.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-15T15:46:32,998 adding 'mgkit/__init__.py' 2021-07-15T15:46:33,001 adding 'mgkit/align.py' 2021-07-15T15:46:33,002 adding 'mgkit/consts.py' 2021-07-15T15:46:33,005 adding 'mgkit/graphs.py' 2021-07-15T15:46:33,009 adding 'mgkit/kegg.py' 2021-07-15T15:46:33,011 adding 'mgkit/logger.py' 2021-07-15T15:46:33,012 adding 'mgkit/simple_cache.py' 2021-07-15T15:46:33,018 adding 'mgkit/taxon.py' 2021-07-15T15:46:33,020 adding 'mgkit/counts/__init__.py' 2021-07-15T15:46:33,023 adding 'mgkit/counts/func.py' 2021-07-15T15:46:33,025 adding 'mgkit/counts/glm.py' 2021-07-15T15:46:33,026 adding 'mgkit/counts/scaling.py' 2021-07-15T15:46:33,028 adding 'mgkit/db/__init__.py' 2021-07-15T15:46:33,029 adding 'mgkit/db/dbm.py' 2021-07-15T15:46:33,031 adding 'mgkit/db/mongo.py' 2021-07-15T15:46:33,033 adding 'mgkit/filter/__init__.py' 2021-07-15T15:46:33,034 adding 'mgkit/filter/common.py' 2021-07-15T15:46:33,035 adding 'mgkit/filter/gff.py' 2021-07-15T15:46:33,036 adding 'mgkit/filter/lists.py' 2021-07-15T15:46:33,038 adding 'mgkit/filter/reads.py' 2021-07-15T15:46:33,039 adding 'mgkit/filter/taxon.py' 2021-07-15T15:46:33,041 adding 'mgkit/io/__init__.py' 2021-07-15T15:46:33,043 adding 'mgkit/io/blast.py' 2021-07-15T15:46:33,044 adding 'mgkit/io/fasta.py' 2021-07-15T15:46:33,046 adding 'mgkit/io/fastq.py' 2021-07-15T15:46:33,055 adding 'mgkit/io/gff.py' 2021-07-15T15:46:33,057 adding 'mgkit/io/glimmer.py' 2021-07-15T15:46:33,059 adding 'mgkit/io/snpdat.py' 2021-07-15T15:46:33,060 adding 'mgkit/io/uniprot.py' 2021-07-15T15:46:33,062 adding 'mgkit/io/utils.py' 2021-07-15T15:46:33,063 adding 'mgkit/mappings/__init__.py' 2021-07-15T15:46:33,065 adding 'mgkit/mappings/cazy.py' 2021-07-15T15:46:33,066 adding 'mgkit/mappings/eggnog.py' 2021-07-15T15:46:33,068 adding 'mgkit/mappings/enzyme.py' 2021-07-15T15:46:33,069 adding 'mgkit/mappings/go.py' 2021-07-15T15:46:33,070 adding 'mgkit/mappings/pandas_map.py' 2021-07-15T15:46:33,071 adding 'mgkit/mappings/taxon.py' 2021-07-15T15:46:33,073 adding 'mgkit/mappings/utils.py' 2021-07-15T15:46:33,075 adding 'mgkit/net/__init__.py' 2021-07-15T15:46:33,076 adding 'mgkit/net/embl.py' 2021-07-15T15:46:33,078 adding 'mgkit/net/pfam.py' 2021-07-15T15:46:33,080 adding 'mgkit/net/uniprot.py' 2021-07-15T15:46:33,081 adding 'mgkit/net/utils.py' 2021-07-15T15:46:33,083 adding 'mgkit/plots/__init__.py' 2021-07-15T15:46:33,085 adding 'mgkit/plots/abund.py' 2021-07-15T15:46:33,087 adding 'mgkit/plots/boxplot.py' 2021-07-15T15:46:33,088 adding 'mgkit/plots/colors.py' 2021-07-15T15:46:33,090 adding 'mgkit/plots/heatmap.py' 2021-07-15T15:46:33,092 adding 'mgkit/plots/unused.py' 2021-07-15T15:46:33,093 adding 'mgkit/plots/utils.py' 2021-07-15T15:46:33,095 adding 'mgkit/snps/__init__.py' 2021-07-15T15:46:33,097 adding 'mgkit/snps/classes.py' 2021-07-15T15:46:33,099 adding 'mgkit/snps/conv_func.py' 2021-07-15T15:46:33,100 adding 'mgkit/snps/filter.py' 2021-07-15T15:46:33,102 adding 'mgkit/snps/funcs.py' 2021-07-15T15:46:33,104 adding 'mgkit/snps/mapper.py' 2021-07-15T15:46:33,106 adding 'mgkit/utils/__init__.py' 2021-07-15T15:46:33,203 adding 'mgkit/utils/_sequence.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T15:46:33,208 adding 'mgkit/utils/common.py' 2021-07-15T15:46:33,210 adding 'mgkit/utils/dictionary.py' 2021-07-15T15:46:33,214 adding 'mgkit/utils/sequence.py' 2021-07-15T15:46:33,215 adding 'mgkit/utils/trans_tables.py' 2021-07-15T15:46:33,217 adding 'mgkit/workflow/__init__.py' 2021-07-15T15:46:33,222 adding 'mgkit/workflow/add_gff_info.py' 2021-07-15T15:46:33,224 adding 'mgkit/workflow/blast2gff.py' 2021-07-15T15:46:33,226 adding 'mgkit/workflow/extract_gff_info.py' 2021-07-15T15:46:33,228 adding 'mgkit/workflow/fasta_utils.py' 2021-07-15T15:46:33,229 adding 'mgkit/workflow/fastq_utils.py' 2021-07-15T15:46:33,232 adding 'mgkit/workflow/filter_gff.py' 2021-07-15T15:46:33,234 adding 'mgkit/workflow/hmmer2gff.py' 2021-07-15T15:46:33,235 adding 'mgkit/workflow/json2gff.py' 2021-07-15T15:46:33,237 adding 'mgkit/workflow/sampling_utils.py' 2021-07-15T15:46:33,239 adding 'mgkit/workflow/snp_parser.py' 2021-07-15T15:46:33,242 adding 'mgkit/workflow/taxon_utils.py' 2021-07-15T15:46:33,244 adding 'mgkit/workflow/utils.py' 2021-07-15T15:46:33,246 adding 'mgkit-0.4.2.data/scripts/download-ncbi-taxa.sh' 2021-07-15T15:46:33,247 adding 'mgkit-0.4.2.data/scripts/download-taxonomy.sh' 2021-07-15T15:46:33,248 adding 'mgkit-0.4.2.data/scripts/download-uniprot-taxa.sh' 2021-07-15T15:46:33,249 adding 'mgkit-0.4.2.data/scripts/sort-gff.sh' 2021-07-15T15:46:33,252 adding 'mgkit-0.4.2.dist-info/METADATA' 2021-07-15T15:46:33,253 adding 'mgkit-0.4.2.dist-info/WHEEL' 2021-07-15T15:46:33,254 adding 'mgkit-0.4.2.dist-info/entry_points.txt' 2021-07-15T15:46:33,255 adding 'mgkit-0.4.2.dist-info/top_level.txt' 2021-07-15T15:46:33,256 adding 'mgkit-0.4.2.dist-info/RECORD' 2021-07-15T15:46:33,264 removing build/bdist.linux-armv7l/wheel 2021-07-15T15:46:33,380 Building wheel for mgkit (setup.py): finished with status 'done' 2021-07-15T15:46:33,386 Created wheel for mgkit: filename=mgkit-0.4.2-cp39-cp39-linux_armv7l.whl size=354693 sha256=c3a509751bfb8ff942d89019905cbbd1b2f6a947378f644c19cf13d997ef2f45 2021-07-15T15:46:33,386 Stored in directory: /tmp/pip-ephem-wheel-cache-gwwrpiqu/wheels/f1/5e/b3/ec8511cbbc45ea6279e405adee187771ab8e444974914ad5ff 2021-07-15T15:46:33,398 Successfully built mgkit 2021-07-15T15:46:33,419 Removed build tracker: '/tmp/pip-req-tracker-gqkzxv_e'