2021-07-15T16:36:44,554 Created temporary directory: /tmp/pip-ephem-wheel-cache-rcedynfg 2021-07-15T16:36:44,557 Created temporary directory: /tmp/pip-req-tracker-j29_ssxy 2021-07-15T16:36:44,558 Initialized build tracking at /tmp/pip-req-tracker-j29_ssxy 2021-07-15T16:36:44,558 Created build tracker: /tmp/pip-req-tracker-j29_ssxy 2021-07-15T16:36:44,558 Entered build tracker: /tmp/pip-req-tracker-j29_ssxy 2021-07-15T16:36:44,559 Created temporary directory: /tmp/pip-wheel-wqstugnq 2021-07-15T16:36:44,586 1 location(s) to search for versions of bx-python: 2021-07-15T16:36:44,586 * https://pypi.org/simple/bx-python/ 2021-07-15T16:36:44,587 Fetching project page and analyzing links: https://pypi.org/simple/bx-python/ 2021-07-15T16:36:44,587 Getting page https://pypi.org/simple/bx-python/ 2021-07-15T16:36:44,589 Found index url https://pypi.org/simple 2021-07-15T16:36:44,824 Found link https://files.pythonhosted.org/packages/ad/17/2f1c2fd7777a6fe0b3ffd8c45172a1462a9c2b0bac9c587739a7f8ef06d4/bx-python-0.6.0.tar.gz#sha256=bf2dbfcca0df7762d69a97ceabb696bbbd21650a17d6ef1447b396e6d9d99910 (from https://pypi.org/simple/bx-python/), version: 0.6.0 2021-07-15T16:36:44,825 Found link https://files.pythonhosted.org/packages/7b/8d/45cb4a291802a40fab711c55bd51904161a3074a03c9600c2dac7c16ed88/bx-python-0.7.1.tar.gz#sha256=9ff7b5354de03c463da6d245d3256a41966e718a16f4021b7f8d4861305c9ea1 (from https://pypi.org/simple/bx-python/), version: 0.7.1 2021-07-15T16:36:44,825 Found link https://files.pythonhosted.org/packages/9d/17/57c5925e099d7a61cbfdb41fc9acbfca404b83730a1af534e2bcddd23289/bx-python-0.7.2.tar.gz#sha256=b083b2c87807bbfa5b11196754768147ca5bb15001cb0dd76ef217065b4ca451 (from https://pypi.org/simple/bx-python/), version: 0.7.2 2021-07-15T16:36:44,825 Found link https://files.pythonhosted.org/packages/55/db/fa76af59a03c88ad80494fc0df2948740bbd58cd3b3ed5c31319624687cc/bx-python-0.7.3.tar.gz#sha256=518895e2dca313d7634c5cf48190b4020a463d6aa6adb42a261630bbd7e0e297 (from https://pypi.org/simple/bx-python/), version: 0.7.3 2021-07-15T16:36:44,826 Found link https://files.pythonhosted.org/packages/74/3e/f19be7f3fb6c6f7d4932050e3dfb1634354c6e896e27d2301ba4df9145e0/bx-python-0.8.1.tar.gz#sha256=057b560c669527a784197a2f8005689d331f62f4765ae4d14bc2217e82dcd8af (from https://pypi.org/simple/bx-python/), version: 0.8.1 2021-07-15T16:36:44,826 Found link https://files.pythonhosted.org/packages/7b/b9/fb458d37d89fa71ce39475d9a44d7830950c3cd6533879a2115a42ac122b/bx-python-0.8.2.tar.gz#sha256=faeb0c7c9fcb2f95c4fc1995af4f45287641deee43a01659bd30fe95c5d37386 (from https://pypi.org/simple/bx-python/), version: 0.8.2 2021-07-15T16:36:44,843 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8c/8a/51cc793ef328dbf61aaae3b21b72d493ee235a93bb1a2171198b7a6da401/bx_python-0.8.2-cp27-cp27m-macosx_10_6_intel.whl#sha256=3522c03f2604f5f070ef1129c66ae0b5763ac30399e357b0c96c8f29dc054e4e (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,844 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/57/29/e45e37b501d037256b6bef11089c824603a9328bc2f3c3177c3b81bf54e0/bx_python-0.8.2-cp27-cp27m-manylinux1_i686.whl#sha256=03a5599f3dc593f86ef6e36fef1af1c5cdb79b6a0819d8bca5258f29de9316d0 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,845 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f8/d8/d588dbf6ea9a46a91bf60fcbdf54690ead1014b538725a3db9594acdf73f/bx_python-0.8.2-cp27-cp27m-manylinux1_x86_64.whl#sha256=c9132bc8fe10fda342eb97924504f2d1072b917892842b19c3557ce656d68ccc (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,845 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c9/0d/86159e1b51cb9b8c0d243351ea8f4a04c3b6a29a99e0996d74747e71f26a/bx_python-0.8.2-cp27-cp27mu-manylinux1_i686.whl#sha256=8d712bff8e6df0937bcf9a7efbaecabab09952a254e7941f7a1f95453f65fc6a (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,845 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c3/70/499015270cf0569e3eae13d847364f955b1ed9f837e8dbf5d62ab636ef57/bx_python-0.8.2-cp27-cp27mu-manylinux1_x86_64.whl#sha256=8c9ce86aac8afab9636541b1e5d9cf7e919ec30277639db29db4b2fd06506f36 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,846 Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/17/74/8648c9dcdbb8901852de538cbe6a70f6c725ec8e14a92c416d8db54396a1/bx_python-0.8.2-cp34-cp34m-macosx_10_6_intel.whl#sha256=087675bc4153082d6f9fa07447566f3acbd2ae1daffee17495aad655a1f9aca0 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,846 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/83/95/ad170d3253051a6821f119406eabf30281d8d67fe411bbf5c10d45c66626/bx_python-0.8.2-cp35-cp35m-macosx_10_6_intel.whl#sha256=5ccc13a32e16636898c2cccd460819c2e32aa6a5f20c441912af55bd8fa7387e (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,848 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f0/a9/c3f55652261d8e22ccb87332a17ea5eee9e296c063cdc559cc4c5cb077a5/bx_python-0.8.2-cp35-cp35m-manylinux1_i686.whl#sha256=8a2d031eee8d84500047fc434d1a1f67305f5e07b427afe4a4283ef8be3cbb5a (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,848 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/de/c2/4bd23312465b448017a8f66e1eba1bee0f8ff1dcd3168c0e134222309edc/bx_python-0.8.2-cp35-cp35m-manylinux1_x86_64.whl#sha256=218dd6b7d83c84fe3ae4ba906101e59fdcd553540253124d743f79a0ccd00b74 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,849 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e1/d5/75bb409db607116f7e2b6ceb199a43e35ec052b08ec27e0eeb0a94403972/bx_python-0.8.2-cp36-cp36m-macosx_10_6_intel.whl#sha256=e10e66d96c399ca21326af919b405055f3f1c66880ab569f55b0d54fcd424a71 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,849 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/b8/b607e495154b0397f37da09dde4caa617cae48e3191b0842edd505c51ba4/bx_python-0.8.2-cp36-cp36m-manylinux1_i686.whl#sha256=f3e568f5858a11a2f9fc573036b983d189857ae90c6da40fc1ca3c15c5556a8f (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,850 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/a0/6a8d14ae2ee8eb9c903969b65d598c9f0d4f0dcd7c849dda3ad7b9bb0bcb/bx_python-0.8.2-cp36-cp36m-manylinux1_x86_64.whl#sha256=1600342b4b9cff53e1a4554f75486d110726f647d9a46db25ed64d1b7f3b054c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,850 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5e/cc/46e368445c8b288c4049ea3c8065321e19d21052f8f57061dfef54fec15e/bx_python-0.8.2-cp37-cp37m-macosx_10_6_intel.whl#sha256=b96e8afa295d45e3db53468d7d01c1adea1671accc3c64b51b2e1598eaf50c03 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,851 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2a/13/1a5d6ca25e16aff4b95cbbc6f84614ed83f93eae9a4b8d5c074dd350f666/bx_python-0.8.2-cp37-cp37m-manylinux1_i686.whl#sha256=d391ca89a8b939890dc6f72d87e3ca22a62fa183269a4651967bf9f9b48ec0dd (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,851 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/da/fe/ef6f4eac24793a24d25da79a3bcfa429739a54597e493a2a7a78efa953dd/bx_python-0.8.2-cp37-cp37m-manylinux1_x86_64.whl#sha256=0b773d36f62faf4848b1088af2e94c226494474eab27e69da5d564ca61222dfb (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,851 Found link https://files.pythonhosted.org/packages/ff/49/8f37bbd3e618c6ef7fd70d255b712dfce41b69059069d46e0660691cacb5/bx-python-0.8.3.tar.gz#sha256=5ba295d3c2cf4d106d069dc53d8d09e4a129b8cc8cb41ee7d72f562b3930c339 (from https://pypi.org/simple/bx-python/), version: 0.8.3 2021-07-15T16:36:44,852 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4f/13/9b864ccd3b7b206f174b8942f38bced8c39ae1070b40329e8e75789c0ae7/bx_python-0.8.3-cp27-cp27m-macosx_10_6_intel.whl#sha256=67c35882c542b6b7966f930c8d252298a5ecd1b731eb861aced74af4fabf934a (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,852 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6b/0f/e5a25c17e4730f2afe770a43898eaaadc6f9264ec73b589dc2d981614098/bx_python-0.8.3-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=1d00f65639b924ad14f616babf68f96d1b4d238079732c7e7ddcb4977933e4d7 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,853 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5e/93/0c0bd7b0bcba395b30ded9d249667a48eb5ca34746c97c5051f4dbf92002/bx_python-0.8.3-cp27-cp27m-manylinux1_i686.whl#sha256=bb6f9bdd97246e9997a19a933dd7dc42cabc6f219a99e171322890f5aafd7fdb (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,853 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/9e/42/0c71892e96ca96214faa48c2189f6d0b9fb22811c16c71733344f10de943/bx_python-0.8.3-cp27-cp27m-manylinux1_x86_64.whl#sha256=8b2113c277e104846e4340034ca7caf3289e41e1adb6f2a51cca2f1f96fd58c2 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,854 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/45/7f/129997471d4b8aceec55a3d383fedc8e0b13f5c1b2cb99572d31a00d4997/bx_python-0.8.3-cp27-cp27mu-manylinux1_i686.whl#sha256=7a3b632113f16e5fb16bdaa92502ba4081bcbca16c67fb35d66bcba5d9ba520c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,854 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/82/b8/2cf1d86c44040487f7d65a9c663c4a7ffa6444eb590395fcb5714696625e/bx_python-0.8.3-cp27-cp27mu-manylinux1_x86_64.whl#sha256=a80fe51a637de53a1b8465eec9495eaf28d725ceb4f6e68eb1ba5231d3a368b6 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,855 Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/cf/a0/f476fc33b50248e7c38e4f6ad3a6cc573df9611f4676e470c2bb0b09571e/bx_python-0.8.3-cp34-cp34m-macosx_10_6_intel.whl#sha256=9795c6d17ba7d0fb140980fd625c0d0b61d74d9dc09493a5741658553ba1d0eb (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,855 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ba/18/d1a2040f69ad038e18d8c6cf2abffb30ddab9ff145606c6579d151c4d520/bx_python-0.8.3-cp34-cp34m-manylinux1_i686.whl#sha256=4242c3c18dc1fac4692285e0df62958319aeb7c4c82896d88b0ad73db16be022 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,855 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c9/61/3db50d123078c32a205bed303b000ee43cc8f27dc80c168e7d4bc7901b84/bx_python-0.8.3-cp34-cp34m-manylinux1_x86_64.whl#sha256=468af6576d21f442ac2a01d4127a33682607900a32aab01c145a5d501fc0a6f4 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,856 Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6e/2e/12578ff7e08fbeb679fe3e210b865ce990851449bc7884a6fb91e990db23/bx_python-0.8.3-cp35-cp35m-macosx_10_6_intel.whl#sha256=20c17a70b25cc298bcb5f4a0dca66bcd9fb0b7873fb3278786260d1af2745e54 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,856 Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4f/00/e5354ec07020c85138233794823f094f0ddd4fdbabfc49e17b1d2fe8e4dc/bx_python-0.8.3-cp35-cp35m-macosx_10_9_x86_64.whl#sha256=68ea36307387e563f9a154982e9b26a88b9b7bca73e5aeb280cf7456ddab6409 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,857 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/20/d8/4f3b480d634bc375aedc95bb937df62b93549753da4a2c56520e1cc95d45/bx_python-0.8.3-cp36-cp36m-manylinux1_i686.whl#sha256=a5065d491c9b09892d987fcfa6161424bdc483997d2a594eef7c7d56e4098504 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,859 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/42/9e/77e265b366d82e05f0e6ded64edc9a9ac85c2f90b8a7282c3499c8b87f8d/bx_python-0.8.3-cp36-cp36m-manylinux1_x86_64.whl#sha256=36671c09ffddf5d563adbcfc04957f5b2ae5283cf6701b3f432ea4224a7a2cbe (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,860 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5d/6f/6b2432445d12d657bfbf470f7174a7c8713ceb67617aea4387815004a375/bx_python-0.8.3-cp37-cp37m-macosx_10_6_intel.whl#sha256=ec18074209cf68530db9e9459b45e9b0ff295565804d38809eb0b8a9661ed3d7 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,860 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/33/d4ea2daae22fba3f58dad92627faefd4652f2ac54a714645fc2c43ce7572/bx_python-0.8.3-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=531bfacdb0b57f7ffa6aa2cad18068ff75e91cd10e1534749655b9aae67f7290 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,861 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/38/fe/875f36c5dd357b28f2b6ddf08831c12a0322092ec43d07891059a7fc6b83/bx_python-0.8.3-cp37-cp37m-manylinux1_i686.whl#sha256=0f264de97f1075d9e69ff019bd714cc2bdbbdf269e786eb9f337ca2f366a8a3c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,861 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8c/9d/54252e8406a16c3caad7afef21508050578c467160a574ae01d672648029/bx_python-0.8.3-cp37-cp37m-manylinux1_x86_64.whl#sha256=4edac451aec0603daed406d2abd6043f920e78afa9e4b6402021bad149b81da5 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,861 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4d/c5/9c8bc28c0e58c1f88bd66bb0f42cd20b82f289935f766501d57818972e0c/bx_python-0.8.3-cp38-cp38-macosx_10_9_x86_64.whl#sha256=0f8b9ab987a6914b5bae5146211aa5e1536b8ab9cf73f6fa6ff8ca79b127347c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,862 Skipping link: none of the wheel's tags (cp39-cp39-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/9f/55/84d2bfff30b994740e61acbdf4f37a9b8d616c5ab115bd0f655f42b94af5/bx_python-0.8.3-cp39-cp39-macosx_10_9_x86_64.whl#sha256=a12d573834814fb4d407a10a1453846e77ba16b22594129f967172c6cc6ea6c3 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,862 Skipping link: none of the wheel's tags (pp27-pypy_73-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0e/43/d5aef355dcea90ee753003158f7701bf65a625a66f0c79725274652e4cc4/bx_python-0.8.3-pp27-pypy_73-macosx_10_9_x86_64.whl#sha256=ea46f1703e8b16faecda111eb9d99a6ca7e4542f06bb8c17a9a5a38714fe640f (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,863 Found link https://files.pythonhosted.org/packages/7f/0a/2e6f962221f12ac2aabb51dc31dd08ed5f769cad5abef831619d7ef42e80/bx-python-0.8.4.tar.gz#sha256=9698390a777a41d3b7f5e833ec1bacb8193fea847889a2092c848afd6b8a7b85 (from https://pypi.org/simple/bx-python/), version: 0.8.4 2021-07-15T16:36:44,863 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/02/74/ba10104095bb2c208b6bdf7164674aba07069c22f75da1be22a71364a18f/bx_python-0.8.4-cp27-cp27m-macosx_10_6_intel.whl#sha256=0a1fad247a647efd79e5ad771f60a5e2e61bbdc502440da37c367840874b7b9d (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,864 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/a4/a9df49abc7d3d7a5f0efbe3a59f255b6f3d08b56178f39c1ae71e0334431/bx_python-0.8.4-cp27-cp27m-manylinux1_i686.whl#sha256=6a393293cfa5494706e68f39cc731921f6f18fcbcadaba9b1acaf885e175ff44 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,864 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a3/f7/1019ff3c57d68d9839adacdaa4fc380b477b994fab38b5bff0e282cc56d0/bx_python-0.8.4-cp27-cp27m-manylinux1_x86_64.whl#sha256=913960f27bfd61a906aaeef58103f7d926e408d2a876ab2a6b4c8810c8963197 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,864 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f8/a9/6d62f61f8bd65c5e95b11add9a125a59db66c9f37c7eddfbda950e8788fc/bx_python-0.8.4-cp27-cp27mu-manylinux1_i686.whl#sha256=ce24d1d10376e2861892e05a65a193737407d0508096195d7a8b99a5680111e7 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,865 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/55/fd/fad7621833686f26f7d5cbeae03584599d13c289ba980af41355e7ef27ae/bx_python-0.8.4-cp27-cp27mu-manylinux1_x86_64.whl#sha256=b5dab08d51ced45fb49589ea23f88be3b77af6f130a8434e6ef593862575e114 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,865 Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/02/a7/78b4dd40a91ce9f0edad78ec7a59cdc80e54251e12d220a617db92e4b8ee/bx_python-0.8.4-cp34-cp34m-manylinux1_x86_64.whl#sha256=051f3ac05966d9d126f6fcda4e2974af95f765e47f39bc949f3caae2e53a8c63 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,867 Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a0/83/9349d58458a4be5e83c46441de52e262bc73927f59ecaeff8b1132b33299/bx_python-0.8.4-cp35-cp35m-macosx_10_6_intel.whl#sha256=5915a8b725dd628c4a19a1b137dc871300731d24c7e54afc1306867401bde44c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,867 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/04/bb/53c90ff62c9eef8440e9fffb45306eba7cd6ccedd4d4ea2f09c6d748b1b6/bx_python-0.8.4-cp35-cp35m-manylinux1_i686.whl#sha256=9d3acd92a7add8ab80710fc18cbc81b81d0a9c8a8328944540139ba3551d9d14 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,868 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/73/74/c67d3fee1c6430679bb91304cde970fe440f13726fbc238367bd39cc6a0d/bx_python-0.8.4-cp35-cp35m-manylinux1_x86_64.whl#sha256=10e1546250dc3912df9fddbac1ea63790dc806dd92bf8e960ae8c926533371a5 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,868 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/42/85/30944623168a67f4e29b65bf2fef058b438d36ede86daa744d305aaa01a3/bx_python-0.8.4-cp36-cp36m-manylinux1_x86_64.whl#sha256=b904e804d11b0d28fc2447ccc66433b0a10f8fb193c8f89794d077e4c3075d3a (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,869 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/bf/78/5e69362f2b449a21b508980b94949b18f87b8eb3735c081128e0c7ffd545/bx_python-0.8.4-cp37-cp37m-macosx_10_6_intel.whl#sha256=1d45d63c419aab89b302ab15bbffc9119ec379d5d01f7ae17708c4ddbc3ba6bf (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,870 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/24/4c/834ddffde232a14e2fd230ad3193cedacdbd4495667aea9313346ee048d9/bx_python-0.8.4-cp37-cp37m-manylinux1_i686.whl#sha256=d0fba78794b3f24ee402c89c1a2fda0fbb4d3ce5a617195c713b28fd286a2e5f (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,870 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/57/66/2f55a309ddb7406155d4653a3f75ae6a041f04b833964e907ee950c1b227/bx_python-0.8.4-cp37-cp37m-manylinux1_x86_64.whl#sha256=6a83b0e97d79150c03eb634a6d5171fcfa6f504b274ab34f4ec51715a3cac1a1 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,871 Found link https://files.pythonhosted.org/packages/83/14/90c855fdd0f696f9d42433cd3f11cc35ac25faf4459fbff5f5defcd3a05c/bx-python-0.8.5.tar.gz#sha256=a01921da9c862c7a568dd7e4896de5a96eb4faaa990edc3baaf68186a158d981 (from https://pypi.org/simple/bx-python/), version: 0.8.5 2021-07-15T16:36:44,871 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/34/92/14237a6dccb848128a1f9e83fe0153d019c714d9c5a72a637a530efb4a9f/bx_python-0.8.5-cp27-cp27m-macosx_10_6_intel.whl#sha256=890f3fcd6e4569e48e50fcc4383351ab740121242134ca35bde9184c4bf04d29 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,872 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/69/fb/b10eeba2bf259e8baa0dc23fa8f93b4d159bd5dc4b8862fd4181988235a1/bx_python-0.8.5-cp27-cp27m-manylinux1_i686.whl#sha256=b575de5943852daeecc325dc3e2b0036fb4059cc00af9fb149b3fc5c249aa0fa (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,872 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/90/cb/bb3cebd69dd5d0905dc2d7e621e0eb72e0b3d6a07f6b520c81876e11ef6d/bx_python-0.8.5-cp27-cp27m-manylinux1_x86_64.whl#sha256=e4e7efc66fc1fb6551cce22dee2ec00d501bcf7d73e49f28a266cfa4542d28d9 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,872 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6c/5a/aa134b89abbac90f5215c98758ebeefeb307a839921bd8982af161ddc9d5/bx_python-0.8.5-cp27-cp27mu-manylinux1_i686.whl#sha256=5197ed272e1f1d1db1d824f18d10196d5d4c3596cf4ce3e4932c8057a6e4d307 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,873 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/14/b8/1c40ee1582302784ffe32c8b2ff32d3562ff43b37b8b32a471ef74ab781d/bx_python-0.8.5-cp27-cp27mu-manylinux1_x86_64.whl#sha256=77a317d87c561bf7eab8b2460e799d633da85047d5d6190ff62fb01fb2324143 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,873 Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d0/bf/27fba4dbd8c871c298102a6284177dca829e2b44bf90dafbc667316de8d2/bx_python-0.8.5-cp34-cp34m-macosx_10_6_intel.whl#sha256=571e7b7e563a95269f10b28cee4b3e2e9b48f51323492c61ecad812ab3e4c796 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,874 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/04/93/c068b540aee17ff56f67889a98cf01e2937c73746ad871fe83f4c5da76a5/bx_python-0.8.5-cp34-cp34m-manylinux1_i686.whl#sha256=2f0ed1c1753bb3a9dd2b4e18afb28098285c5826978dcc60664b36dde3a9af9e (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,874 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c8/a1/fbc49d46986ecbd18fee8b3ccb81a4ac81392a0982cfabb19ebd644618b2/bx_python-0.8.5-cp34-cp34m-manylinux1_x86_64.whl#sha256=f5ceee121b235a339e0dd0ec4b916fc5652a614cf6e0b9b6ea90709420b5b7f1 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,875 Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f8/01/c8b093789bcc75dee484064d067e8dcb988fe2d206683e12ec5af989772d/bx_python-0.8.5-cp35-cp35m-macosx_10_6_intel.whl#sha256=e8d43ae52ccbae5677c1bd18e5f7fde696089e8a409e90255998cc51093a28df (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,875 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/bd/2894e64a7509bdafd6e52d466441445b39e2577092789efaffc6ac5a56ed/bx_python-0.8.5-cp35-cp35m-manylinux1_i686.whl#sha256=c16866889d099d8fb2bfadf8baf92590120681c5cd93b0274c36b4173a7acd7e (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,876 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/6b/09/770b928aae101d4cabb0594421995dbf2f3fac0712933cb281530fa159f4/bx_python-0.8.5-cp36-cp36m-manylinux1_i686.whl#sha256=c241be5fc818aea7897c70e865f590c9397a9c6a15debd9476024a59f06c1ed7 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,877 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8d/98/d041efb521a6a85e9305f07678c880f7c51e54509b19492ea20659021f60/bx_python-0.8.5-cp36-cp36m-manylinux1_x86_64.whl#sha256=5cf382c6c03d23856a1380a99d4a6405b844b24898e86004037d12c212868e98 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,877 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/de/61/faf4cc59b794b8f7fc38e5f934064b8a19c4e253f7631f02a0a0c4c015a9/bx_python-0.8.5-cp37-cp37m-macosx_10_6_intel.whl#sha256=f5dfaf074bd3e0da90f856b8a55fbaeb3b50757c89c6771ce0e3883cd84fe8f6 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,878 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8d/e6/29b183b50fbdc77cf0482fbd25df8978d28b3ded35f926d6b12487fd3910/bx_python-0.8.5-cp37-cp37m-manylinux1_i686.whl#sha256=e4aa38a28efc6c9838acb57e70a6488a8d8c3f76477f18e74b611814f38c7c1b (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,878 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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2021-07-15T16:36:44,879 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8a/ad/b6ca5674007c0434fe2be300d65faf99a77e9d022a93c09b778f3d3e2294/bx_python-0.8.6-cp27-cp27m-manylinux1_i686.whl#sha256=86778e9eb4f195160cd4439fb46fcb22bae4219d714982f08c17c13d71d9602c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,880 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a8/4e/498dca333572492dccce17d94b7e9eea04df51d25c85c5c616178f53e2a2/bx_python-0.8.6-cp27-cp27m-manylinux1_x86_64.whl#sha256=4dae36031d30154a5aae40020f7c0cfc27dc142e412ff224304dbf6633a408a9 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,880 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/70/9e/1db1e6263a146d5a2e87467b6ca4cd4ff4a06f72206d6ff81f7f25afb2c1/bx_python-0.8.6-cp27-cp27m-manylinux2010_i686.whl#sha256=078cdcefe7e1fbb90bf037c32486df1b20d7518c3cbb880ea5d7efa530475b1f (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,881 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6f/43/86b935d3626eec97978b12de73242fdc6c251f3c073bd6c19321d2a6dc95/bx_python-0.8.6-cp27-cp27m-manylinux2010_x86_64.whl#sha256=e5dd177782d186ce33a343e6c7ca9def3dcc5e1228c14b1810cb0b1eade2f86b (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,881 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a5/ec/2cb819195027d79b95e6bd292d62d8cdf9469da68bdfcd71ffa77fb3c86a/bx_python-0.8.6-cp27-cp27mu-manylinux1_i686.whl#sha256=7bbfdfa38f493157dba22001e5d96bdcdc553138584af30fa63fd8e5739fe7d7 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,882 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/43/7d/ec1b6eac2b3579062cb87a33b5e514a35737d85a18422e69f3d54373d2a1/bx_python-0.8.6-cp27-cp27mu-manylinux1_x86_64.whl#sha256=747a7372e13fbb115a98593654617134a2c3cd02ede62113539a2b7296821fec (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,882 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/b2/5c/59eba4e4b79426c77f81823dc7c0d77bf7765e51204051f43d009a870889/bx_python-0.8.6-cp27-cp27mu-manylinux2010_i686.whl#sha256=83816b45f2ede9158d9c18a5f2bdf0c9fe6c5c868e63fc259ddedaf048fd94be (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,883 Skipping link: none of the wheel's tags (cp27-cp27mu-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f2/73/66ecaee12aad7c4955a0451b7f621b4fb3ed9fe0868caa80b60d16e4b806/bx_python-0.8.6-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=980c65a6119cd71026696e833df9d4d1fca0c83a75125fd1bbacecd833713178 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,883 Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/32/1f/ac5914fcfa04bb557482761fa4454c2d953439896fa704396cab87e62ea1/bx_python-0.8.6-cp35-cp35m-macosx_10_6_intel.whl#sha256=ebfd8751fd8a4ceb24a69b6fc1a8c29ff1b3a681fa4e4a1fd39a7e322b96fbfb (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,883 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/43/6b/a8841c21c6e09a0bf042b1327c5d24953d62edddaef127f527925ec19649/bx_python-0.8.6-cp35-cp35m-manylinux1_i686.whl#sha256=cf97e9b3def0814af58164b1f3ffba21a6910af8ee45e9154b11bf20da003916 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,884 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/a5/d1/2e20ce2b89077eec5543d55601bdc94f89ad36fd73bcd12417692aba1214/bx_python-0.8.6-cp35-cp35m-manylinux2010_x86_64.whl#sha256=cee5454447e6e3545f94e650564e519c5688375b47b4b8dbd60b7f937bc0d21d (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,885 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_6_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a6/b9/a35beffd3322c8cb2abc536acc93428b8080e161f43205aa5b3d6cbb1bc0/bx_python-0.8.6-cp36-cp36m-macosx_10_6_intel.whl#sha256=070d3e716e600a9dc6be26392f1e4d5e8764b8eb573fabdb2b1ff5f493c993a3 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,886 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/9b/80/df46bdec8c073a34893e6e15962752607ceb4379503857a414e21e03be42/bx_python-0.8.6-cp36-cp36m-manylinux1_i686.whl#sha256=a48a57e60f5f4ebbc76b85f077eb48e31d1ac28c9c8aaf60b28f74ca0116ea9a (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,886 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/27/c3/9c70a1544b332626ba607b6c6f6b82365087ba5c6c21b7db3126406f707a/bx_python-0.8.6-cp36-cp36m-manylinux1_x86_64.whl#sha256=ef05a445b5480031b977d144b5984a0ea5f6bb59e2b18db4da0b047e82fb3303 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,887 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/f7/12/1bb56f5b2364e9ff213d3c8bb2d1a603353e2426f4817896e87111adf742/bx_python-0.8.6-cp37-cp37m-macosx_10_6_intel.whl#sha256=097932e2be98df0dd8f3efe3dae0129c3e8e73f817d7bbda09f72e95ffc071d3 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,888 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4a/73/99fbb7ec8a3a96907027690ed700e762592944395eb9864d0299267f5f32/bx_python-0.8.6-cp37-cp37m-manylinux1_i686.whl#sha256=c80e1c41b5dbfe77388689dd46e7f57ce8e88a86c8341a6438bfed1cdccbba93 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,888 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/b4/d5/09b47275929b83679949d8ab61065536c0beec809e009192fee0abce2050/bx_python-0.8.6-cp37-cp37m-manylinux1_x86_64.whl#sha256=09c3e2baede99fc296a44030626e51b01383fae5367ce54c06640cac88951606 (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,889 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2f/f8/2c3da7e7b502ea17561dfae2040eaef3713ec3971c3d6561da1cb706988c/bx_python-0.8.6-cp37-cp37m-manylinux2010_i686.whl#sha256=9c9cd0f17f0f0293f7e5309a194b56169eed052f3d1124702139e44eab1e5d2c (from https://pypi.org/simple/bx-python/) 2021-07-15T16:36:44,889 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0c/17/7ee812ec078a9034789f626133be5a29be87a40bb980bcb14217e675141c/bx_python-0.8.9-pp36-pypy36_pp73-manylinux1_x86_64.whl#sha256=f1e2e195dc435af0b51ba71c5870112968e67b71f7daff068fda86db1809f480 (from https://pypi.org/simple/bx-python/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*) 2021-07-15T16:36:44,938 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/79/d721f55cec220ba73c87bccb16cf3d232c3c152da83c921f7748dc7e6963/bx_python-0.8.9-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=4c78c7f5847b0826b044db52651c3ac168f30b0163b990e2c15da6e7067e57f7 (from https://pypi.org/simple/bx-python/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*) 2021-07-15T16:36:44,939 Found link https://files.pythonhosted.org/packages/e9/0d/cdde9b57ae1f62da0302b73e3e7983723f081b8098f745a9115af3bc89ab/bx-python-0.8.10.tar.gz#sha256=f1e17b85ee5830b6e634d3f7e7f95adab8b713b9d10511feca4d8bd921c27304 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6), version: 0.8.10 2021-07-15T16:36:44,939 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5a/15/7adb95c9da8fdf2f947240b7cf1746c63b8699decf9c9f0b02b50a7e9322/bx_python-0.8.10-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=5511008cad21f921e0025eaa665d9ddd41926d95144ceff9b30b0f45c4d15525 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,940 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/11/64/11d88881ff08a5bcd0721eb9a34c8f157433a1fffd3a4fef2e16a0a37c1d/bx_python-0.8.10-cp36-cp36m-manylinux1_i686.whl#sha256=f5a51fac77ffe78f9aa41d85fbf6e75a697cd7950797f92d79301776a7706375 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,940 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5b/98/52825b4bc72e3274891cfe105a559118b65e272aac3b24a9dfaf7aa395bf/bx_python-0.8.10-cp36-cp36m-manylinux1_x86_64.whl#sha256=d80aafda0f90be99572c84ba99a1da59062296f6234e5342a56a42f70aa75a5b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,941 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/63/1b/4cee3239bb0ec441b16e22707da1ed4bf692085830751a88abbeb16c15ff/bx_python-0.8.10-cp36-cp36m-manylinux2010_i686.whl#sha256=72d864eaefed000e35c1a7859524b2c2828047c5bb32c5bd1596ddc5b775e307 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,941 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/e3/353511735f350ba528dcc2aa7ef90f76a3779dcd4876ca61c41e4f9cc026/bx_python-0.8.10-cp36-cp36m-manylinux2010_x86_64.whl#sha256=3ca443537eabd6f1901b7f253e893742a0bcf50e9f2f3986a8080ad01beab1a8 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,941 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a8/05/946515212957a09309192e2c100ea09b36d1b7c0a20b230aa96c89dfa00f/bx_python-0.8.10-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=76c6fdb02b3154ef7445cb9535185543c47ce136b5da71a29cfb28a82814ecd4 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,942 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/64/ec84f907f77a539b47b8bf53b8b1fcea99115a7766337e1fcf571101ccfe/bx_python-0.8.10-cp37-cp37m-manylinux1_i686.whl#sha256=e60ef8a7ea3f2448d4ce9aee9ae0b806948c8158001794af0b1195bebd477d93 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,942 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a7/9f/35bf1540470c9b80b96b86a6e4ac1a75c566f19bc3f4e08b2e4e141b4af6/bx_python-0.8.10-cp37-cp37m-manylinux1_x86_64.whl#sha256=fe7c1bab4e264acdef278e04895943a2b9185629c82069699cb5f7c2ee3aa77c (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,943 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a7/44/8b00881dfa6c2b49f5102f43166fdeb873a544ff94aaf0f62cba1c0d1bde/bx_python-0.8.10-cp37-cp37m-manylinux2010_i686.whl#sha256=6a35dd006e73815501ed645ad11efee57ff95209d9ffe0bfe5177d498887f516 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,943 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/05/62/d29d52bde474dd07f370c2a2d88cb411a7869c6c98bc3c6c26a5e753f4f3/bx_python-0.8.10-cp37-cp37m-manylinux2010_x86_64.whl#sha256=c3b7bbcd008e14d0ddfd0c312485402c901db81af0b598f64d60ead6633334dd (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,944 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e4/26/3d2d33313678e3b76d53988d30753fc2ab34c824a46d5bfd56eb2f8fb67e/bx_python-0.8.10-cp38-cp38-macosx_10_9_x86_64.whl#sha256=34e8dcd22521a744ad218749dc46688da2ae410d176b1eb8222e853343bda7cf (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,944 Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3f/a5/f4fd1c7bdf95fa4c175a9829d591b33f4b89a978aaefd43a9496badd6b8d/bx_python-0.8.10-cp38-cp38-manylinux1_i686.whl#sha256=5ead629c48f072400f2d92b4b7c0263d3e04544993436190b8816c49a006d8da (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,945 Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e8/20/9d09d53fb8f10d0e1a8beafb389a6138a0bba3dc5c38caa703360fbee2e8/bx_python-0.8.10-cp38-cp38-manylinux1_x86_64.whl#sha256=1a157f14e16e5bd887aba38a77477c45a7148a4a91e890317759c4164930836b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,945 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/96/a8/97843069ec65305d6b2bc8e9f1c41c16dfa1087297ac66d4f57f41ef53ca/bx_python-0.8.10-cp38-cp38-manylinux2010_i686.whl#sha256=dc4f0b8c4194f497726223ee4371841675aefc88a972c3aa581014c35969b96b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,945 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/45/fd/4e61f1b043de87f691ba95aa2908bfa8a4a2e2fe103c83c240280461df05/bx_python-0.8.10-cp38-cp38-manylinux2010_x86_64.whl#sha256=c12f8b920ad5dd8314d0f899e38cd6db2345d223979474cb11aa23e8d9012631 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,946 Skipping link: none of the wheel's tags (cp39-cp39-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3a/71/f552a7bc9757e70976b6fb89ffd4f65414e64c8877788c3ed22e8f14973d/bx_python-0.8.10-cp39-cp39-macosx_10_9_x86_64.whl#sha256=b4257626878e92736057971755a9818839111abb715214aa940b819168a5476e (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,946 Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/72/ee/e9cf75b0fbe389125ecabc45e3eacabf0180e8670c622d9db05d63cb5154/bx_python-0.8.10-cp39-cp39-manylinux1_i686.whl#sha256=dd9bbcbe35ae37abbb4ce95db90ae0649a2659be4ca1193d028bbc518a525c58 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,947 Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4d/4c/8f943d44576ed83ae7442f5e2d491dedcb435af40e69ac4593ba5c705a27/bx_python-0.8.10-cp39-cp39-manylinux1_x86_64.whl#sha256=57140f120ef02f06410543f04b8d7c1051bcac08c7a10088ba5797fe154888e5 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,947 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/43/dc/1de7b82d1b96b246cff9fcfba17ea2d6136bf66d987bdf5bde59e62bd05e/bx_python-0.8.10-cp39-cp39-manylinux2010_i686.whl#sha256=6792bc5a71f1caa67114c26c5eafe10abb1896a55ad7d326b108e791c9804130 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,948 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c7/78/fb2fb4e52e688cae1fd9bf1a441eb0a5beb062666cfff673611335b08dd3/bx_python-0.8.10-cp39-cp39-manylinux2010_x86_64.whl#sha256=6a267531c544f4dfbc31b94b384966004be5718aab4dd0141072b337696767dd (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,948 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8b/e5/51ff86a839d79e47b514c9fa4b067b4ac63fc4a8ab4bd6a965de5a29bbdd/bx_python-0.8.10-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=76e960201699d3f8a0746f82e30296ca3cef713f6f928112d3a6134078f87d6e (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,949 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/52/4b/78a3fbdc30d7754c426c308f7dc16542bd886a631747edc9f5015e789d4a/bx_python-0.8.10-pp36-pypy36_pp73-manylinux1_x86_64.whl#sha256=bea61fc3d1e70423feb1f0e5ad5fe0a2cc9709258ba5e97eddb30b4a875ce751 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,949 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/1e/03/91f741328629e5b65489a69b88a57720fff97644519c29684c3e3ef963e6/bx_python-0.8.10-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=491b80194abb27ce4a5896e478fe53744139bd8692b96c7e248a7f8fe196c76c (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,949 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/65/81/8962aaf607080f670136562af5171a4e29b963a0321d7c1662d5c2088500/bx_python-0.8.10-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=c05018a0d34dfc3185185cead9b12b275341e527fd7626830cc4cc358d01926d (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,950 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5d/63/e131946f1bed548aeeb75d2ad4cb48526ebd4aaeb40f61f50b4242afdb07/bx_python-0.8.10-pp37-pypy37_pp73-manylinux1_x86_64.whl#sha256=68bd2dfc301eec76b357a6d354b06c4f0247c61c8d112a80f9c5828371f5dcf2 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,950 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/7d/2e/a9994987c16f0c5993ca071f590bbbd9a1ae00d5bc1c51b70643acfe8559/bx_python-0.8.10-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=c6dee68077e27200df7596ebcb1f376a8ed7724b7d53595118a9bb12c45c4d8f (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,951 Found link https://files.pythonhosted.org/packages/09/06/34d30efc7ee4f94945335a1aa4c5fc461e406f3c9f9f73f6102d26bf1932/bx-python-0.8.11.tar.gz#sha256=7f26c2a5516b999f4330887f2b126608b4d96ed0f1de6e62ee59f3d066586974 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6), version: 0.8.11 2021-07-15T16:36:44,951 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8b/aa/56315a902f6a126e45a2f249ce7ba44acea3a329031200c29473799cacec/bx_python-0.8.11-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c8a61e3944c888e1099e98caadae84cfb8944c04675235a8417c4cd5b1ca7c16 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,952 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/10/77/969b74a8a2c4610cde8fccb3628a79e979d7b1fd671ae9bb6b79c9da5b98/bx_python-0.8.11-cp36-cp36m-manylinux1_i686.whl#sha256=219381dfecad8d87cbc09c135e3183f312ef0b66778b53a41d2e208819034791 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,952 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0b/ac/fe999126a74ef16b1bbaae444b3502c582544162b26a6c0b139787331a3f/bx_python-0.8.11-cp36-cp36m-manylinux1_x86_64.whl#sha256=ffd619286de4ebe75642f7a4a9156f3bab7a48ef7992bada6f662767a11c1bc8 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,953 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d5/1e/580a7c1a0c03ecd1d91d35d4d5e69c52454c3f115c742a611c1b4e4edf10/bx_python-0.8.11-cp36-cp36m-manylinux2010_i686.whl#sha256=19603a14783af56280e0de7f092b8de775b2ce786a87724a40d8a5bc60fd78bb (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,953 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/32/0e/3e65963a1aafee0e36d5fdec16b5d6a965d7ec31afdbf59668f12d85fd3a/bx_python-0.8.11-cp36-cp36m-manylinux2010_x86_64.whl#sha256=25deb190b107ecdb91b23f1c68cbdde0ccb27df632eab06c0824792f888767bb (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,954 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/62/7a/552f13359097301b07358cee4a2b7cace6e844542967aa9390ebe41e079d/bx_python-0.8.11-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=7df75fe1488530103732eb7d2b4ab99e91d2006b4a52f955cb8908069da4d06b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,954 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a1/60/5b6c19daf08b4a39f6a229351f4497231181603f4a799173020ffcf61e48/bx_python-0.8.11-cp37-cp37m-manylinux1_i686.whl#sha256=2375cd26a82f538bf4ad96e8f70e276ca18de0f234d857817e6005bbdf7f6b16 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,955 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e2/c8/d619fb52e487fe3823ba50e7d3ebba7ecb3eb5d2339d85702b364429bce3/bx_python-0.8.11-cp37-cp37m-manylinux1_x86_64.whl#sha256=f1ea0429bc882cb5fbb987888ed416b46fe365a0c6bc15056704f16f19083e4b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,955 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5c/56/e5e1238d7a88a4eb56c41552b9b3ebd1cca24cba87b8c70810ceed8b6cd5/bx_python-0.8.11-cp37-cp37m-manylinux2010_i686.whl#sha256=03b66e7d40e430363be53129501307ed747079357c11d3eacfd9629f642c0a72 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,955 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c9/18/04f562cbc03594d7713b35aec0578cf2cfcb99623350778c9df4d1d122cc/bx_python-0.8.11-cp37-cp37m-manylinux2010_x86_64.whl#sha256=7192b17f977eed99ef2aef07408d623a81722e079437f55a44ce48d03b3d93ee (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,956 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5b/d9/a10de8e92ebd96d791f5977b9514de81ed155d4db0a4fb54e8900f3c6b75/bx_python-0.8.11-cp38-cp38-macosx_10_9_x86_64.whl#sha256=859ea10fd4e78ebb2dedb3ff1927241a50fd2087ffb8475bc3e68462bd2537e1 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,956 Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/41/96/f9c70e5074a536a17c39b85a3b50d3bea2aaeb5f0f6ecb19286182e4c24d/bx_python-0.8.11-cp38-cp38-manylinux1_i686.whl#sha256=6f9695f36e50a05e83223ce24b496dab124b08f71c85969886ce1d630f2d5302 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,957 Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/00/77/82c2a7a81ad5e92829c71b6a7dd115db4f443c58c205a9ece9d49f93b481/bx_python-0.8.11-cp38-cp38-manylinux1_x86_64.whl#sha256=6754abcaa9368d456f45da1271a1aae990c0e6ae6907b22ce9f2a6131bc4ba9b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,957 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/74/fa/54b3ad4cbd9295e6381e5b7e2893102370fd11705b607c2706802697a787/bx_python-0.8.11-cp38-cp38-manylinux2010_i686.whl#sha256=f192b848f99b62c61578093b4cce4eef6f97d0390c55103e51e38c053d37c3af (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,958 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/af/15/8ccc0b60252c717e1047596d71d17f21a7a3076a938963d2aa3550a2aed2/bx_python-0.8.11-cp38-cp38-manylinux2010_x86_64.whl#sha256=a380b44ae954ff5c5c5b504b95a75a35e4d38e9bd8080fa5dd3c9b41f38dc5dd (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,958 Skipping link: none of the wheel's tags (cp39-cp39-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6b/75/73976b2491a4b0a4b78b6fca974bb42b1a3fa445f348a6dfa83dfda170f8/bx_python-0.8.11-cp39-cp39-macosx_10_9_x86_64.whl#sha256=631313cfc6b1c57f561155352009ee102af2c3baf4708c0e5828ee86f535d242 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,958 Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/aa/c9/0ca6679e46386ccf434efd4e0c612174d3e3f8500dc6625244bc8d8af923/bx_python-0.8.11-cp39-cp39-manylinux1_i686.whl#sha256=fd2f3529e0310fbb45a7682b2fed67c604bcd1e83a4de67db5b8ae913929a3b9 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,959 Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/b1/0f/ebc077a5f9af238d7a31b99fce1a470e8fce90a50f1bfc8230cbca2f0311/bx_python-0.8.11-cp39-cp39-manylinux1_x86_64.whl#sha256=c9bb843ae52a292587767ec188b6f8e2cdc006333a43968c9bab5c49e80a52cf (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,959 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_i686) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/dd/54/39ae5f5b0fa0e707c0b58fdc17d859762674b2259dd09e2546f0e97e6c0b/bx_python-0.8.11-cp39-cp39-manylinux2010_i686.whl#sha256=68c52125cfb2b7872f4370f69dd3f206d557483533aa20ea747c8509ae08bb5a (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,960 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6c/b4/427cf1d6e6090ee580f51d12d0b0133570b682703fa39514bff301268727/bx_python-0.8.11-cp39-cp39-manylinux2010_x86_64.whl#sha256=b291113f656becea27c2ea3c1f1f3061c2bf822b376f46dc89f588b77410cc30 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,960 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/30/0a/fc92d003024fe3b2d3a3cd550d7479832ca7701ded9c3c4a9667c89be4ba/bx_python-0.8.11-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=4ca0619a9d1853e755441bb6c6a57ba40ab8a5cca301ef23796c50bdac2e49b7 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,961 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ba/60/cffbc0eb0e67b135fbfa8bae65cecf5b0014a1bf3e19d67e03ecc769daa7/bx_python-0.8.11-pp36-pypy36_pp73-manylinux1_x86_64.whl#sha256=4d3fb29373a53b97e66ec91ce8c1b3260472cfcb1a9be1ef96ca59404feee12e (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,961 Skipping link: none of the wheel's tags (pp36-pypy36_pp73-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/85/55/79dd532576cb1b9e7ad45ac75b21c582cd9f0c1e191b27900fcaf9be4add/bx_python-0.8.11-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=4c3af8ddfb7481f3ef8c69aaa5851043edf27f042ec95a8b6d88c2f0dbf3a36d (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,962 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/23/40/88476393f6c5b371204677ecb62177bfa8bb9f719d23fa025c809400c563/bx_python-0.8.11-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=3a2adbad10c540b24e21b2ca5c71abbb99dd1617d38b2e53455b23d0f638176b (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,962 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8c/62/d7df582698ce4c6bbe4ef3c27f65fd6622cf31b5f5b9d82d74dd9edf7d8f/bx_python-0.8.11-pp37-pypy37_pp73-manylinux1_x86_64.whl#sha256=53516c1b68c7222a95182f55597f977c4803fb57a37277bbbf00c90773c3f3b4 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,963 Skipping link: none of the wheel's tags (pp37-pypy37_pp73-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8a/6e/3c16ac592a4fa3dacb0ae83f6b4a2485c28b3f0ba07a3a1d6df0677e1b1a/bx_python-0.8.11-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=b785703d01cbd58b8398dbd4e1faabe48957b8ae0a1760f7870f761a86c520e6 (from https://pypi.org/simple/bx-python/) (requires-python:>=3.6) 2021-07-15T16:36:44,963 Skipping link: not a file: https://pypi.org/simple/bx-python/ 2021-07-15T16:36:44,966 Given no hashes to check 1 links for project 'bx-python': discarding no candidates 2021-07-15T16:36:44,985 Collecting bx-python==0.8.8 2021-07-15T16:36:44,986 Created temporary directory: /tmp/pip-unpack-0fo_4w63 2021-07-15T16:36:45,876 Downloading bx-python-0.8.8.tar.gz (1.4 MB) 2021-07-15T16:36:47,016 Added bx-python==0.8.8 from https://files.pythonhosted.org/packages/5c/7f/03375de727d21c5aecd4ee210ce458a045203e723999f706325e06a81c4f/bx-python-0.8.8.tar.gz#sha256=ad0808ab19c007e8beebadc31827e0d7560ac0e935f1100fb8cc93607400bb47 to build tracker '/tmp/pip-req-tracker-j29_ssxy' 2021-07-15T16:36:47,017 Running setup.py (path:/tmp/pip-wheel-wqstugnq/bx-python_7ca90c84ca324d708a36a5f548fedb65/setup.py) egg_info for package bx-python 2021-07-15T16:36:47,018 Created temporary directory: /tmp/pip-pip-egg-info-tz55racq 2021-07-15T16:36:47,019 Running command python setup.py egg_info 2021-07-15T16:36:48,971 running egg_info 2021-07-15T16:36:48,973 creating /tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info 2021-07-15T16:36:48,974 writing /tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/PKG-INFO 2021-07-15T16:36:48,977 writing dependency_links to /tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/dependency_links.txt 2021-07-15T16:36:48,979 writing requirements to /tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/requires.txt 2021-07-15T16:36:48,980 writing top-level names to /tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/top_level.txt 2021-07-15T16:36:48,982 writing manifest file '/tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/SOURCES.txt' 2021-07-15T16:36:49,023 reading manifest file '/tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/SOURCES.txt' 2021-07-15T16:36:49,025 reading manifest template 'MANIFEST.in' 2021-07-15T16:36:49,027 warning: no files found matching 'distribute_setup.py' 2021-07-15T16:36:49,296 adding license file 'LICENSE' 2021-07-15T16:36:49,304 writing manifest file '/tmp/pip-pip-egg-info-tz55racq/bx_python.egg-info/SOURCES.txt' 2021-07-15T16:36:49,416 Source in /tmp/pip-wheel-wqstugnq/bx-python_7ca90c84ca324d708a36a5f548fedb65 has version 0.8.8, which satisfies requirement bx-python==0.8.8 from https://files.pythonhosted.org/packages/5c/7f/03375de727d21c5aecd4ee210ce458a045203e723999f706325e06a81c4f/bx-python-0.8.8.tar.gz#sha256=ad0808ab19c007e8beebadc31827e0d7560ac0e935f1100fb8cc93607400bb47 2021-07-15T16:36:49,417 Removed bx-python==0.8.8 from https://files.pythonhosted.org/packages/5c/7f/03375de727d21c5aecd4ee210ce458a045203e723999f706325e06a81c4f/bx-python-0.8.8.tar.gz#sha256=ad0808ab19c007e8beebadc31827e0d7560ac0e935f1100fb8cc93607400bb47 from build tracker '/tmp/pip-req-tracker-j29_ssxy' 2021-07-15T16:36:49,427 Created temporary directory: /tmp/pip-unpack-pia7d4ie 2021-07-15T16:36:49,428 Building wheels for collected packages: bx-python 2021-07-15T16:36:49,433 Created temporary directory: /tmp/pip-wheel-az3ncafo 2021-07-15T16:36:49,433 Building wheel for bx-python (setup.py): started 2021-07-15T16:36:49,434 Destination directory: /tmp/pip-wheel-az3ncafo 2021-07-15T16:36:49,434 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wqstugnq/bx-python_7ca90c84ca324d708a36a5f548fedb65/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wqstugnq/bx-python_7ca90c84ca324d708a36a5f548fedb65/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-az3ncafo 2021-07-15T16:36:51,447 running bdist_wheel 2021-07-15T16:36:51,453 running build 2021-07-15T16:36:51,453 running build_py 2021-07-15T16:36:51,461 creating build 2021-07-15T16:36:51,462 creating build/lib.linux-armv7l-3.9 2021-07-15T16:36:51,463 copying lib/psyco_full.py -> build/lib.linux-armv7l-3.9 2021-07-15T16:36:51,466 creating build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,467 copying lib/bx/__init__.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,468 copying lib/bx/filter.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,470 copying lib/bx/interval_index_file.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,473 copying lib/bx/wiggle_tests.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,476 copying lib/bx/binned_array_tests.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,478 copying lib/bx/gene_reader.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,491 copying lib/bx/bitset_utils.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,494 copying lib/bx/interval_index_file_tests.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,496 copying lib/bx/bitset_tests.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,499 copying lib/bx/wiggle.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,501 copying lib/bx/seqmapping.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,504 copying lib/bx/binned_array.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,507 copying lib/bx/bitset_builders.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,510 copying lib/bx/seqmapping_tests.py -> build/lib.linux-armv7l-3.9/bx 2021-07-15T16:36:51,514 creating build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,515 copying lib/bx_extras/__init__.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,517 copying lib/bx_extras/fpconst.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,519 copying lib/bx_extras/lrucache.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,522 copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,524 copying lib/bx_extras/pstat.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,528 copying lib/bx_extras/pyparsing.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,535 copying lib/bx_extras/stats.py -> build/lib.linux-armv7l-3.9/bx_extras 2021-07-15T16:36:51,543 creating build/lib.linux-armv7l-3.9/bx/bbi 2021-07-15T16:36:51,544 copying lib/bx/bbi/__init__.py -> build/lib.linux-armv7l-3.9/bx/bbi 2021-07-15T16:36:51,546 copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-armv7l-3.9/bx/bbi 2021-07-15T16:36:51,549 creating build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,550 copying lib/bx/seq/core.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,552 copying lib/bx/seq/__init__.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,554 copying lib/bx/seq/qdna.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,557 copying lib/bx/seq/nib.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,559 copying lib/bx/seq/twobit.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,561 copying lib/bx/seq/fasta.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,563 copying lib/bx/seq/twobit_tests.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,564 copying lib/bx/seq/fasta_tests.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,566 copying lib/bx/seq/seq_tests.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,568 copying lib/bx/seq/qdna_tests.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,570 copying lib/bx/seq/seq.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,572 copying lib/bx/seq/nib_tests.py -> build/lib.linux-armv7l-3.9/bx/seq 2021-07-15T16:36:51,575 creating build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,576 copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,579 copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,581 copying lib/bx/pwm/__init__.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,583 copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,585 copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,587 copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,589 copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,591 copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,593 copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-armv7l-3.9/bx/pwm 2021-07-15T16:36:51,597 creating build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,598 copying lib/bx/phylo/__init__.py -> build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,600 copying lib/bx/phylo/phast.py -> build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,602 copying lib/bx/phylo/newick_tests.py -> build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,604 copying lib/bx/phylo/newick.py -> build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,607 copying lib/bx/phylo/phast_tests.py -> build/lib.linux-armv7l-3.9/bx/phylo 2021-07-15T16:36:51,610 creating build/lib.linux-armv7l-3.9/bx/arrays 2021-07-15T16:36:51,610 copying lib/bx/arrays/__init__.py -> build/lib.linux-armv7l-3.9/bx/arrays 2021-07-15T16:36:51,612 copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-armv7l-3.9/bx/arrays 2021-07-15T16:36:51,616 creating build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,616 copying lib/bx/cookbook/progress_bar.py -> build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,619 copying lib/bx/cookbook/__init__.py -> build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,621 copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,622 copying lib/bx/cookbook/argparse.py -> build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,628 copying lib/bx/cookbook/attribute.py -> build/lib.linux-armv7l-3.9/bx/cookbook 2021-07-15T16:36:51,631 creating build/lib.linux-armv7l-3.9/bx/intseq 2021-07-15T16:36:51,631 copying lib/bx/intseq/__init__.py -> build/lib.linux-armv7l-3.9/bx/intseq 2021-07-15T16:36:51,635 creating build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,635 copying lib/bx/misc/__init__.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,638 copying lib/bx/misc/filecache.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,640 copying lib/bx/misc/readlengths.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,642 copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,644 copying lib/bx/misc/cdb_tests.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,646 copying lib/bx/misc/cdb.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,659 copying lib/bx/misc/seeklzop.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,662 copying lib/bx/misc/filecache_tests.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,664 copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,666 copying lib/bx/misc/binary_file.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,669 copying lib/bx/misc/seekbzip2.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,672 copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-armv7l-3.9/bx/misc 2021-07-15T16:36:51,676 creating build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,677 copying lib/bx/align/core.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,680 copying lib/bx/align/__init__.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,682 copying lib/bx/align/maf_tests.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,684 copying lib/bx/align/maf.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,687 copying lib/bx/align/axt.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,689 copying lib/bx/align/score.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,692 copying lib/bx/align/epo_tests.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,694 copying lib/bx/align/lav_tests.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,696 copying lib/bx/align/lav.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,699 copying lib/bx/align/epo.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,702 copying lib/bx/align/score_tests.py -> build/lib.linux-armv7l-3.9/bx/align 2021-07-15T16:36:51,705 creating build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,706 copying lib/bx/intervals/__init__.py -> build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,708 copying lib/bx/intervals/random_intervals.py -> build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,711 copying lib/bx/intervals/io.py -> build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,713 copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,716 copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-armv7l-3.9/bx/intervals 2021-07-15T16:36:51,718 creating build/lib.linux-armv7l-3.9/bx/tabular 2021-07-15T16:36:51,719 copying lib/bx/tabular/__init__.py -> build/lib.linux-armv7l-3.9/bx/tabular 2021-07-15T16:36:51,721 copying lib/bx/tabular/io.py -> build/lib.linux-armv7l-3.9/bx/tabular 2021-07-15T16:36:51,724 creating build/lib.linux-armv7l-3.9/bx/motif 2021-07-15T16:36:51,725 copying lib/bx/motif/__init__.py -> build/lib.linux-armv7l-3.9/bx/motif 2021-07-15T16:36:51,727 copying lib/bx/motif/pwm.py -> build/lib.linux-armv7l-3.9/bx/motif 2021-07-15T16:36:51,730 copying lib/bx/motif/pwm_tests.py -> build/lib.linux-armv7l-3.9/bx/motif 2021-07-15T16:36:51,733 creating build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,734 copying lib/bx/align/tools/__init__.py -> build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,736 copying lib/bx/align/tools/chop.py -> build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,738 copying lib/bx/align/tools/tile.py -> build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,740 copying lib/bx/align/tools/thread.py -> build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,741 copying lib/bx/align/tools/fuse.py -> build/lib.linux-armv7l-3.9/bx/align/tools 2021-07-15T16:36:51,744 creating build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,745 copying lib/bx/align/sitemask/core.py -> build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,747 copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,749 copying lib/bx/align/sitemask/quality.py -> build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,751 copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,753 copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-armv7l-3.9/bx/align/sitemask 2021-07-15T16:36:51,756 creating build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,757 copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,759 copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,761 copying lib/bx/intervals/operations/join.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,763 copying lib/bx/intervals/operations/concat.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,765 copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,768 copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,770 copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,772 copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,774 copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,776 copying lib/bx/intervals/operations/merge.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,778 copying lib/bx/intervals/operations/complement.py -> build/lib.linux-armv7l-3.9/bx/intervals/operations 2021-07-15T16:36:51,781 creating build/lib.linux-armv7l-3.9/bx/motif/logo 2021-07-15T16:36:51,782 copying lib/bx/motif/logo/__init__.py -> build/lib.linux-armv7l-3.9/bx/motif/logo 2021-07-15T16:36:51,785 creating build/lib.linux-armv7l-3.9/bx/motif/io 2021-07-15T16:36:51,786 copying lib/bx/motif/io/__init__.py -> build/lib.linux-armv7l-3.9/bx/motif/io 2021-07-15T16:36:51,787 copying lib/bx/motif/io/transfac.py -> build/lib.linux-armv7l-3.9/bx/motif/io 2021-07-15T16:36:51,790 copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-armv7l-3.9/bx/motif/io 2021-07-15T16:36:51,792 copying lib/bx/motif/logo/template.ps -> build/lib.linux-armv7l-3.9/bx/motif/logo 2021-07-15T16:36:51,976 Skipping optional fixer: buffer 2021-07-15T16:36:52,046 Skipping optional fixer: idioms 2021-07-15T16:36:52,217 Skipping optional fixer: set_literal 2021-07-15T16:36:52,319 Skipping optional fixer: ws_comma 2021-07-15T16:37:15,547 running build_ext 2021-07-15T16:37:15,623 skipping 'lib/bx/bitset.c' Cython extension (up-to-date) 2021-07-15T16:37:15,624 skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) 2021-07-15T16:37:15,625 skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) 2021-07-15T16:37:15,626 skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) 2021-07-15T16:37:15,627 skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) 2021-07-15T16:37:15,628 skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) 2021-07-15T16:37:15,629 skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) 2021-07-15T16:37:15,630 skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) 2021-07-15T16:37:15,631 skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) 2021-07-15T16:37:15,632 skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) 2021-07-15T16:37:15,633 skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) 2021-07-15T16:37:15,633 skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) 2021-07-15T16:37:15,634 skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) 2021-07-15T16:37:15,636 skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) 2021-07-15T16:37:15,636 skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) 2021-07-15T16:37:15,638 skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) 2021-07-15T16:37:15,638 skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) 2021-07-15T16:37:15,639 skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) 2021-07-15T16:37:15,640 skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) 2021-07-15T16:37:15,641 skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) 2021-07-15T16:37:15,643 skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) 2021-07-15T16:37:15,644 skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) 2021-07-15T16:37:15,644 building 'bx.bitset' extension 2021-07-15T16:37:15,645 creating build/temp.linux-armv7l-3.9 2021-07-15T16:37:15,645 creating build/temp.linux-armv7l-3.9/lib 2021-07-15T16:37:15,646 creating build/temp.linux-armv7l-3.9/lib/bx 2021-07-15T16:37:15,647 creating build/temp.linux-armv7l-3.9/src 2021-07-15T16:37:15,647 creating build/temp.linux-armv7l-3.9/src/kent 2021-07-15T16:37:15,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c lib/bx/bitset.c -o build/temp.linux-armv7l-3.9/lib/bx/bitset.o 2021-07-15T16:37:16,172 lib/bx/bitset.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:16,176 lib/bx/bitset.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,176 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,176 | ^ 2021-07-15T16:37:16,177 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,177 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,177 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,178 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,178 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,178 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,182 lib/bx/bitset.c:6775:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,182 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,182 | ^ 2021-07-15T16:37:16,183 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,183 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,183 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,183 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:16,183 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:16,183 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,187 lib/bx/bitset.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,187 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,188 | ^ 2021-07-15T16:37:16,188 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,188 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,188 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,188 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,188 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,188 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,192 lib/bx/bitset.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,193 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,193 | ^ 2021-07-15T16:37:16,193 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,193 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,193 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,193 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,193 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,198 lib/bx/bitset.c:6775:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,198 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,198 | ^ 2021-07-15T16:37:16,198 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,198 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,198 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,198 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:16,199 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:16,199 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,203 lib/bx/bitset.c:6775:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,203 6775 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,203 | ^ 2021-07-15T16:37:16,203 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,203 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,204 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,204 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,204 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,204 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,209 lib/bx/bitset.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,209 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,209 | ^ 2021-07-15T16:37:16,210 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,210 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,210 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,210 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,210 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,210 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,214 lib/bx/bitset.c:6791:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,214 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,215 | ^ 2021-07-15T16:37:16,215 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,215 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,215 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,215 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:16,215 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:16,215 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,220 lib/bx/bitset.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,220 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,220 | ^ 2021-07-15T16:37:16,220 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,220 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,220 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,220 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,221 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,225 lib/bx/bitset.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,225 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,225 | ^ 2021-07-15T16:37:16,225 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,225 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,226 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,226 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,226 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,226 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,230 lib/bx/bitset.c:6791:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,230 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,230 | ^ 2021-07-15T16:37:16,231 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,231 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,231 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,231 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:16,231 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:16,231 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:16,235 lib/bx/bitset.c:6791:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:16,235 6791 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:16,235 | ^ 2021-07-15T16:37:16,236 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:16,236 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:16,236 from lib/bx/bitset.c:4: 2021-07-15T16:37:16,236 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:16,236 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:16,236 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:21,142 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/binBits.c -o build/temp.linux-armv7l-3.9/src/binBits.o 2021-07-15T16:37:21,574 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/bits.c -o build/temp.linux-armv7l-3.9/src/kent/bits.o 2021-07-15T16:37:21,727 src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2021-07-15T16:37:21,727 9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; 2021-07-15T16:37:21,727 | ^~~~~ 2021-07-15T16:37:22,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/common.c -o build/temp.linux-armv7l-3.9/src/kent/common.o 2021-07-15T16:37:22,230 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bitset.o build/temp.linux-armv7l-3.9/src/binBits.o build/temp.linux-armv7l-3.9/src/kent/bits.o build/temp.linux-armv7l-3.9/src/kent/common.o -o build/lib.linux-armv7l-3.9/bx/bitset.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:22,375 building 'bx.intervals.intersection' extension 2021-07-15T16:37:22,376 creating build/temp.linux-armv7l-3.9/lib/bx/intervals 2021-07-15T16:37:22,376 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/intervals/intersection.c -o build/temp.linux-armv7l-3.9/lib/bx/intervals/intersection.o 2021-07-15T16:37:22,929 lib/bx/intervals/intersection.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:22,934 lib/bx/intervals/intersection.c:10396:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,934 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,935 | ^ 2021-07-15T16:37:22,935 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,936 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,936 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,936 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,936 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,936 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,943 lib/bx/intervals/intersection.c:10396:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,943 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,943 | ^ 2021-07-15T16:37:22,943 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,943 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,943 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,944 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:22,944 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:22,944 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,950 lib/bx/intervals/intersection.c:10396:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,950 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,951 | ^ 2021-07-15T16:37:22,951 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,951 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,951 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,951 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,951 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,951 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,958 lib/bx/intervals/intersection.c:10396:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,958 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,958 | ^ 2021-07-15T16:37:22,958 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,959 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,959 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,959 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,959 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,965 lib/bx/intervals/intersection.c:10396:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,965 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,966 | ^ 2021-07-15T16:37:22,966 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,966 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,966 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,966 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:22,966 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:22,966 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,971 lib/bx/intervals/intersection.c:10396:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,972 10396 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,972 | ^ 2021-07-15T16:37:22,972 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,972 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,972 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,972 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,973 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,973 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,979 lib/bx/intervals/intersection.c:10412:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,980 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,980 | ^ 2021-07-15T16:37:22,980 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,980 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,980 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,980 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,980 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,980 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,985 lib/bx/intervals/intersection.c:10412:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,986 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,986 | ^ 2021-07-15T16:37:22,986 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,986 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,986 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,986 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:22,986 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:22,986 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,992 lib/bx/intervals/intersection.c:10412:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,992 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,992 | ^ 2021-07-15T16:37:22,992 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,992 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,992 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,993 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,993 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,993 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:22,998 lib/bx/intervals/intersection.c:10412:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:22,998 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:22,998 | ^ 2021-07-15T16:37:22,998 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:22,999 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:22,999 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:22,999 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:22,999 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:22,999 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:23,004 lib/bx/intervals/intersection.c:10412:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:23,004 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:23,005 | ^ 2021-07-15T16:37:23,005 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:23,005 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:23,005 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:23,005 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:23,005 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:23,005 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:23,011 lib/bx/intervals/intersection.c:10412:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:23,011 10412 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:23,011 | ^ 2021-07-15T16:37:23,011 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:23,011 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:23,011 from lib/bx/intervals/intersection.c:4: 2021-07-15T16:37:23,011 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:23,012 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:23,012 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:31,659 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/intervals/intersection.o -o build/lib.linux-armv7l-3.9/bx/intervals/intersection.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:31,810 building 'bx.align._core' extension 2021-07-15T16:37:31,811 creating build/temp.linux-armv7l-3.9/lib/bx/align 2021-07-15T16:37:31,811 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/_core.c -o build/temp.linux-armv7l-3.9/lib/bx/align/_core.o 2021-07-15T16:37:32,190 lib/bx/align/_core.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:32,191 lib/bx/align/_core.c:1729:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,191 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,191 | ^ 2021-07-15T16:37:32,191 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,192 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,192 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,192 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,192 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,192 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,192 lib/bx/align/_core.c:1729:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,192 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,192 | ^ 2021-07-15T16:37:32,193 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,193 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,193 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,193 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:32,193 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:32,193 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,193 lib/bx/align/_core.c:1729:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,194 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,194 | ^ 2021-07-15T16:37:32,194 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,194 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,194 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,194 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,194 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,195 lib/bx/align/_core.c:1729:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,195 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,195 | ^ 2021-07-15T16:37:32,195 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,195 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,195 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,195 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,195 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,196 lib/bx/align/_core.c:1729:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,196 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,196 | ^ 2021-07-15T16:37:32,196 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,196 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,196 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,196 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:32,196 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:32,197 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,197 lib/bx/align/_core.c:1729:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,197 1729 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,197 | ^ 2021-07-15T16:37:32,197 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,197 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,197 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,197 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,198 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,198 lib/bx/align/_core.c:1745:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,198 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,198 | ^ 2021-07-15T16:37:32,198 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,198 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,198 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,199 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,199 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,199 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,199 lib/bx/align/_core.c:1745:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,199 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,199 | ^ 2021-07-15T16:37:32,199 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,199 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,200 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,200 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:32,200 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:32,200 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,200 lib/bx/align/_core.c:1745:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,200 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,200 | ^ 2021-07-15T16:37:32,200 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,200 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,201 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,201 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,201 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,201 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,201 lib/bx/align/_core.c:1745:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,201 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,201 | ^ 2021-07-15T16:37:32,201 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,201 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,202 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,202 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,202 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,202 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,202 lib/bx/align/_core.c:1745:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,202 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,202 | ^ 2021-07-15T16:37:32,202 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,203 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,203 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,203 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:32,203 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:32,203 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:32,203 lib/bx/align/_core.c:1745:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:32,203 1745 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:32,204 | ^ 2021-07-15T16:37:32,204 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:32,204 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:32,204 from lib/bx/align/_core.c:4: 2021-07-15T16:37:32,204 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:32,204 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:32,204 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,054 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/align/_core.o -o build/lib.linux-armv7l-3.9/bx/align/_core.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:33,169 building 'bx.seq._nib' extension 2021-07-15T16:37:33,170 creating build/temp.linux-armv7l-3.9/lib/bx/seq 2021-07-15T16:37:33,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_nib.c -o build/temp.linux-armv7l-3.9/lib/bx/seq/_nib.o 2021-07-15T16:37:33,564 lib/bx/seq/_nib.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:33,565 lib/bx/seq/_nib.c:2041:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,565 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,565 | ^ 2021-07-15T16:37:33,567 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,567 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,567 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,567 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,567 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,567 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,569 lib/bx/seq/_nib.c:2041:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,569 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,569 | ^ 2021-07-15T16:37:33,569 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,569 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,570 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,570 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:33,570 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:33,570 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,570 lib/bx/seq/_nib.c:2041:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,570 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,571 | ^ 2021-07-15T16:37:33,571 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,571 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,571 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,571 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,571 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,571 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,571 lib/bx/seq/_nib.c:2041:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,572 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,572 | ^ 2021-07-15T16:37:33,572 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,572 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,572 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,572 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,572 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,572 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,573 lib/bx/seq/_nib.c:2041:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,573 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,573 | ^ 2021-07-15T16:37:33,573 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,573 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,573 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,573 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:33,573 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:33,573 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,574 lib/bx/seq/_nib.c:2041:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,574 2041 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,574 | ^ 2021-07-15T16:37:33,574 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,574 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,574 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,574 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,574 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,575 lib/bx/seq/_nib.c:2057:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,575 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,575 | ^ 2021-07-15T16:37:33,575 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,575 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,576 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,576 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,576 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,576 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,576 lib/bx/seq/_nib.c:2057:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,576 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,576 | ^ 2021-07-15T16:37:33,576 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,577 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,577 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,577 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:33,577 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:33,577 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,577 lib/bx/seq/_nib.c:2057:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,577 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,577 | ^ 2021-07-15T16:37:33,577 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,578 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,578 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,578 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,578 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,578 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,578 lib/bx/seq/_nib.c:2057:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,578 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,578 | ^ 2021-07-15T16:37:33,579 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,579 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,579 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,579 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,579 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,579 lib/bx/seq/_nib.c:2057:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,580 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,580 | ^ 2021-07-15T16:37:33,580 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,580 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,580 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,580 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:33,580 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:33,580 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:33,580 lib/bx/seq/_nib.c:2057:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:33,581 2057 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:33,581 | ^ 2021-07-15T16:37:33,581 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:33,581 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:33,581 from lib/bx/seq/_nib.c:4: 2021-07-15T16:37:33,581 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:33,581 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:33,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:34,758 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/seq/_nib.o -o build/lib.linux-armv7l-3.9/bx/seq/_nib.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:34,870 building 'bx.seq._twobit' extension 2021-07-15T16:37:34,870 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_twobit.c -o build/temp.linux-armv7l-3.9/lib/bx/seq/_twobit.o 2021-07-15T16:37:35,284 lib/bx/seq/_twobit.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:35,286 lib/bx/seq/_twobit.c:3212:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,286 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,286 | ^ 2021-07-15T16:37:35,287 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,287 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,287 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,287 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,287 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,288 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,289 lib/bx/seq/_twobit.c:3212:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,290 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,290 | ^ 2021-07-15T16:37:35,290 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,290 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,290 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,290 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:35,291 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:35,291 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,293 lib/bx/seq/_twobit.c:3212:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,293 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,293 | ^ 2021-07-15T16:37:35,293 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,293 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,293 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,293 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,293 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,294 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,296 lib/bx/seq/_twobit.c:3212:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,296 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,296 | ^ 2021-07-15T16:37:35,296 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,296 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,296 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,297 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,297 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,297 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,299 lib/bx/seq/_twobit.c:3212:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,299 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,299 | ^ 2021-07-15T16:37:35,299 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,299 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,299 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,300 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:35,300 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:35,300 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,302 lib/bx/seq/_twobit.c:3212:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,302 3212 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,302 | ^ 2021-07-15T16:37:35,302 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,302 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,302 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,303 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,305 lib/bx/seq/_twobit.c:3228:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,306 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,306 | ^ 2021-07-15T16:37:35,306 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,306 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,306 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,306 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,306 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,307 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,308 lib/bx/seq/_twobit.c:3228:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,309 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,309 | ^ 2021-07-15T16:37:35,309 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,309 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,309 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,309 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:35,309 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:35,310 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,311 lib/bx/seq/_twobit.c:3228:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,312 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,312 | ^ 2021-07-15T16:37:35,312 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,312 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,312 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,312 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,312 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,313 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,314 lib/bx/seq/_twobit.c:3228:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,315 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,315 | ^ 2021-07-15T16:37:35,315 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,315 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,315 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,315 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,315 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,316 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,317 lib/bx/seq/_twobit.c:3228:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,318 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,318 | ^ 2021-07-15T16:37:35,318 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,318 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,318 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,318 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:35,318 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:35,318 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:35,320 lib/bx/seq/_twobit.c:3228:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:35,321 3228 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:35,321 | ^ 2021-07-15T16:37:35,321 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:35,321 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:35,321 from lib/bx/seq/_twobit.c:4: 2021-07-15T16:37:35,321 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:35,321 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:35,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,155 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/seq/_twobit.o -o build/lib.linux-armv7l-3.9/bx/seq/_twobit.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:38,276 building 'bx._seqmapping' extension 2021-07-15T16:37:38,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/_seqmapping.c -o build/temp.linux-armv7l-3.9/lib/bx/_seqmapping.o 2021-07-15T16:37:38,657 lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: 2021-07-15T16:37:38,657 lib/bx/_seqmapping.c:1762:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,657 1762 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) 2021-07-15T16:37:38,657 | ^~~~~~~~~ 2021-07-15T16:37:38,658 In file included from /usr/include/python3.9/Python.h:151, 2021-07-15T16:37:38,658 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,658 /usr/include/python3.9/abstract.h:354:17: note: declared here 2021-07-15T16:37:38,658 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, 2021-07-15T16:37:38,658 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,662 lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: 2021-07-15T16:37:38,662 lib/bx/_seqmapping.c:1962:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,663 1962 | __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) 2021-07-15T16:37:38,663 | ^~~~~~~~~ 2021-07-15T16:37:38,663 In file included from /usr/include/python3.9/Python.h:151, 2021-07-15T16:37:38,663 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,663 /usr/include/python3.9/abstract.h:354:17: note: declared here 2021-07-15T16:37:38,663 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, 2021-07-15T16:37:38,663 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,680 lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: 2021-07-15T16:37:38,681 lib/bx/_seqmapping.c:3007:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,681 3007 | __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) 2021-07-15T16:37:38,681 | ^~~~~~~~~ 2021-07-15T16:37:38,681 In file included from /usr/include/python3.9/Python.h:151, 2021-07-15T16:37:38,682 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,682 /usr/include/python3.9/abstract.h:343:17: note: declared here 2021-07-15T16:37:38,682 343 | PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, 2021-07-15T16:37:38,682 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,685 lib/bx/_seqmapping.c:3108:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,685 3108 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) 2021-07-15T16:37:38,686 | ^~~~~~~~~ 2021-07-15T16:37:38,686 In file included from /usr/include/python3.9/Python.h:151, 2021-07-15T16:37:38,686 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,686 /usr/include/python3.9/abstract.h:354:17: note: declared here 2021-07-15T16:37:38,686 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, 2021-07-15T16:37:38,686 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,743 lib/bx/_seqmapping.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:38,746 lib/bx/_seqmapping.c:5720:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,746 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,746 | ^ 2021-07-15T16:37:38,747 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,747 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,747 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,747 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,747 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,747 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,750 lib/bx/_seqmapping.c:5720:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,750 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,750 | ^ 2021-07-15T16:37:38,750 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,751 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,751 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,751 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:38,751 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:38,751 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,753 lib/bx/_seqmapping.c:5720:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,753 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,754 | ^ 2021-07-15T16:37:38,754 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,754 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,754 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,754 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,754 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,754 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,757 lib/bx/_seqmapping.c:5720:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,757 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,757 | ^ 2021-07-15T16:37:38,757 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,757 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,757 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,757 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,757 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,757 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,760 lib/bx/_seqmapping.c:5720:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,760 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,760 | ^ 2021-07-15T16:37:38,760 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,760 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,760 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,761 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:38,761 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:38,761 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,763 lib/bx/_seqmapping.c:5720:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,763 5720 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,763 | ^ 2021-07-15T16:37:38,764 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,764 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,764 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,764 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,764 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,764 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,767 lib/bx/_seqmapping.c:5736:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,768 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,768 | ^ 2021-07-15T16:37:38,768 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,768 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,768 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,768 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,768 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,768 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,771 lib/bx/_seqmapping.c:5736:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,771 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,771 | ^ 2021-07-15T16:37:38,771 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,771 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,771 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,771 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:38,771 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:38,772 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,774 lib/bx/_seqmapping.c:5736:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,774 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,774 | ^ 2021-07-15T16:37:38,774 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,774 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,774 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,775 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,775 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,775 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,777 lib/bx/_seqmapping.c:5736:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,777 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,777 | ^ 2021-07-15T16:37:38,778 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,778 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,778 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,778 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,778 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,780 lib/bx/_seqmapping.c:5736:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,781 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,781 | ^ 2021-07-15T16:37:38,781 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,781 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,781 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,781 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:38,781 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:38,781 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:38,784 lib/bx/_seqmapping.c:5736:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:38,784 5736 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:38,784 | ^ 2021-07-15T16:37:38,784 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:38,784 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:38,784 from lib/bx/_seqmapping.c:4: 2021-07-15T16:37:38,784 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:38,785 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:38,785 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:43,743 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/_seqmapping.o -o build/lib.linux-armv7l-3.9/bx/_seqmapping.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:43,883 building 'bx.misc.bgzf' extension 2021-07-15T16:37:43,884 creating build/temp.linux-armv7l-3.9/lib/bx/misc 2021-07-15T16:37:43,885 creating build/temp.linux-armv7l-3.9/src/samtools 2021-07-15T16:37:43,885 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c lib/bx/misc/bgzf.c -o build/temp.linux-armv7l-3.9/lib/bx/misc/bgzf.o 2021-07-15T16:37:44,294 lib/bx/misc/bgzf.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:44,295 lib/bx/misc/bgzf.c:2501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,295 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,295 | ^ 2021-07-15T16:37:44,295 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,295 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,296 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,296 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,296 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,296 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,297 lib/bx/misc/bgzf.c:2501:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,297 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,297 | ^ 2021-07-15T16:37:44,297 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,297 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,297 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,297 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:44,297 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:44,298 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,298 lib/bx/misc/bgzf.c:2501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,298 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,298 | ^ 2021-07-15T16:37:44,298 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,298 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,298 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,299 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,299 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,299 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,299 lib/bx/misc/bgzf.c:2501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,299 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,300 | ^ 2021-07-15T16:37:44,300 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,300 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,300 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,300 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,300 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,300 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,300 lib/bx/misc/bgzf.c:2501:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,301 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,301 | ^ 2021-07-15T16:37:44,301 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,301 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,301 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,301 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:44,301 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:44,301 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,302 lib/bx/misc/bgzf.c:2501:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,302 2501 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,302 | ^ 2021-07-15T16:37:44,302 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,302 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,302 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,303 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,304 lib/bx/misc/bgzf.c:2517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,304 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,304 | ^ 2021-07-15T16:37:44,304 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,304 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,304 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,304 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,305 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,305 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,305 lib/bx/misc/bgzf.c:2517:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,305 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,305 | ^ 2021-07-15T16:37:44,305 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,306 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,306 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,306 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:44,306 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:44,306 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,306 lib/bx/misc/bgzf.c:2517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,306 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,307 | ^ 2021-07-15T16:37:44,307 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,307 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,307 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,307 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,307 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,307 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,308 lib/bx/misc/bgzf.c:2517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,308 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,308 | ^ 2021-07-15T16:37:44,308 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,308 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,308 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,308 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,308 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,308 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,309 lib/bx/misc/bgzf.c:2517:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,309 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,309 | ^ 2021-07-15T16:37:44,309 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,309 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,309 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,310 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:44,310 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:44,310 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:44,310 lib/bx/misc/bgzf.c:2517:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:44,310 2517 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:44,310 | ^ 2021-07-15T16:37:44,311 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:44,311 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:44,311 from lib/bx/misc/bgzf.c:4: 2021-07-15T16:37:44,311 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:44,311 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:44,311 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:46,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c src/samtools/bgzf.c -o build/temp.linux-armv7l-3.9/src/samtools/bgzf.o 2021-07-15T16:37:46,185 src/samtools/bgzf.c: In function ‘cache_block’: 2021-07-15T16:37:46,186 src/samtools/bgzf.c:422:40: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T16:37:46,186 422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { 2021-07-15T16:37:46,186 | ^ 2021-07-15T16:37:46,188 src/samtools/bgzf.c: In function ‘read_block’: 2021-07-15T16:37:46,188 src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T16:37:46,188 462 | if (count != sizeof(header)) { 2021-07-15T16:37:46,188 | ^~ 2021-07-15T16:37:46,191 src/samtools/bgzf.c: In function ‘bgzf_close’: 2021-07-15T16:37:46,191 src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 2021-07-15T16:37:46,192 603 | int count, block_length = deflate_block(fp, 0); 2021-07-15T16:37:46,192 | ^~~~~ 2021-07-15T16:37:46,873 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/misc/bgzf.o build/temp.linux-armv7l-3.9/src/samtools/bgzf.o -lz -o build/lib.linux-armv7l-3.9/bx/misc/bgzf.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:47,042 building 'bx.intervals.cluster' extension 2021-07-15T16:37:47,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intervals/cluster.c -o build/temp.linux-armv7l-3.9/lib/bx/intervals/cluster.o 2021-07-15T16:37:47,448 lib/bx/intervals/cluster.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:47,449 lib/bx/intervals/cluster.c:2654:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,449 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,450 | ^ 2021-07-15T16:37:47,450 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,450 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,450 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,450 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,450 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,451 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,451 lib/bx/intervals/cluster.c:2654:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,451 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,452 | ^ 2021-07-15T16:37:47,452 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,452 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,452 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,452 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:47,452 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:47,452 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,453 lib/bx/intervals/cluster.c:2654:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,453 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,453 | ^ 2021-07-15T16:37:47,453 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,453 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,453 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,453 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,454 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,454 lib/bx/intervals/cluster.c:2654:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,454 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,454 | ^ 2021-07-15T16:37:47,454 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,455 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,455 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,455 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,455 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,455 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,455 lib/bx/intervals/cluster.c:2654:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,456 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,456 | ^ 2021-07-15T16:37:47,456 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,456 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,456 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,456 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:47,456 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:47,456 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,457 lib/bx/intervals/cluster.c:2654:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,457 2654 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,457 | ^ 2021-07-15T16:37:47,457 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,457 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,458 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,458 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,458 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,458 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,459 lib/bx/intervals/cluster.c:2670:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,459 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,459 | ^ 2021-07-15T16:37:47,459 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,459 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,460 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,460 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,460 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,460 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,460 lib/bx/intervals/cluster.c:2670:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,461 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,461 | ^ 2021-07-15T16:37:47,461 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,461 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,461 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,461 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:47,461 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:47,461 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,462 lib/bx/intervals/cluster.c:2670:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,462 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,462 | ^ 2021-07-15T16:37:47,462 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,462 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,462 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,463 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,463 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,463 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,463 lib/bx/intervals/cluster.c:2670:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,463 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,463 | ^ 2021-07-15T16:37:47,464 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,464 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,464 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,464 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,464 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,464 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,465 lib/bx/intervals/cluster.c:2670:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,465 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,465 | ^ 2021-07-15T16:37:47,465 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,465 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,465 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,465 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:47,465 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:47,466 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:47,466 lib/bx/intervals/cluster.c:2670:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:47,466 2670 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:47,466 | ^ 2021-07-15T16:37:47,466 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:47,467 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:47,467 from lib/bx/intervals/cluster.c:4: 2021-07-15T16:37:47,467 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:47,467 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:47,467 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:49,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/cluster.c -o build/temp.linux-armv7l-3.9/src/cluster.o 2021-07-15T16:37:49,635 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/intervals/cluster.o build/temp.linux-armv7l-3.9/src/cluster.o -o build/lib.linux-armv7l-3.9/bx/intervals/cluster.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:49,752 building 'bx.pwm._position_weight_matrix' extension 2021-07-15T16:37:49,753 creating build/temp.linux-armv7l-3.9/lib/bx/pwm 2021-07-15T16:37:49,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-armv7l-3.9/lib/bx/pwm/_position_weight_matrix.o 2021-07-15T16:37:50,131 lib/bx/pwm/_position_weight_matrix.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:50,132 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,132 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,132 | ^ 2021-07-15T16:37:50,133 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,133 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,134 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,134 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,134 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,134 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,135 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,135 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,135 | ^ 2021-07-15T16:37:50,135 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,136 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,136 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,136 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:50,136 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:50,136 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,137 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,137 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,137 | ^ 2021-07-15T16:37:50,138 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,138 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,138 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,138 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,138 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,138 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,139 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,139 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,140 | ^ 2021-07-15T16:37:50,140 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,140 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,140 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,140 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,140 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,140 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,141 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,142 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,142 | ^ 2021-07-15T16:37:50,142 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,142 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,142 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,142 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:50,142 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:50,142 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,143 lib/bx/pwm/_position_weight_matrix.c:1669:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,144 1669 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,144 | ^ 2021-07-15T16:37:50,144 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,144 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,144 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,144 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,144 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,145 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,146 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,146 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,146 | ^ 2021-07-15T16:37:50,147 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,147 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,147 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,147 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,147 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,147 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,148 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,148 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,149 | ^ 2021-07-15T16:37:50,149 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,149 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,149 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,149 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:50,149 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:50,149 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,150 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,150 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,150 | ^ 2021-07-15T16:37:50,150 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,150 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,150 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,150 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,150 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,151 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,151 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,151 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,151 | ^ 2021-07-15T16:37:50,151 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,151 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,151 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,151 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,151 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,152 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,152 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,152 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,152 | ^ 2021-07-15T16:37:50,152 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,152 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,152 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,152 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:50,153 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:50,153 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,153 lib/bx/pwm/_position_weight_matrix.c:1685:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:50,153 1685 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:50,153 | ^ 2021-07-15T16:37:50,153 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:50,153 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:50,154 from lib/bx/pwm/_position_weight_matrix.c:4: 2021-07-15T16:37:50,154 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:50,154 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:50,154 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:50,964 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/pwm_utils.c -o build/temp.linux-armv7l-3.9/src/pwm_utils.o 2021-07-15T16:37:51,048 src/pwm_utils.c: In function ‘main’: 2021-07-15T16:37:51,048 src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] 2021-07-15T16:37:51,048 11 | int string_size = strlen(argv[1]); 2021-07-15T16:37:51,049 | ^~~~~~ 2021-07-15T16:37:51,049 src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ 2021-07-15T16:37:51,049 src/pwm_utils.c:5:1: note: include ‘’ or provide a declaration of ‘strlen’ 2021-07-15T16:37:51,049 4 | #include 2021-07-15T16:37:51,049 +++ |+#include 2021-07-15T16:37:51,050 5 | 2021-07-15T16:37:51,050 src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T16:37:51,050 12 | if (strlen(argv[2]) != string_size) { 2021-07-15T16:37:51,050 | ^~ 2021-07-15T16:37:51,146 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-armv7l-3.9/src/pwm_utils.o -o build/lib.linux-armv7l-3.9/bx/pwm/_position_weight_matrix.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:51,261 building 'bx.motif._pwm' extension 2021-07-15T16:37:51,261 creating build/temp.linux-armv7l-3.9/lib/bx/motif 2021-07-15T16:37:51,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/motif/_pwm.c -o build/temp.linux-armv7l-3.9/lib/bx/motif/_pwm.o 2021-07-15T16:37:51,642 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:37:51,642 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:37:51,642 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:37:51,642 from lib/bx/motif/_pwm.c:596: 2021-07-15T16:37:51,642 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:37:51,643 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:37:51,643 | ^~~~~~~ 2021-07-15T16:37:51,702 lib/bx/motif/_pwm.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:51,702 lib/bx/motif/_pwm.c:2443:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,703 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,703 | ^ 2021-07-15T16:37:51,703 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,703 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,703 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,703 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,703 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,704 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,704 lib/bx/motif/_pwm.c:2443:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,704 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,704 | ^ 2021-07-15T16:37:51,705 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,705 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,705 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,705 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:51,705 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:51,705 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,705 lib/bx/motif/_pwm.c:2443:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,706 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,706 | ^ 2021-07-15T16:37:51,706 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,706 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,706 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,706 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,706 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,706 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,707 lib/bx/motif/_pwm.c:2443:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,707 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,707 | ^ 2021-07-15T16:37:51,707 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,707 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,707 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,708 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,708 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,708 lib/bx/motif/_pwm.c:2443:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,708 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,708 | ^ 2021-07-15T16:37:51,708 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,709 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,709 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,709 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:51,709 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:51,709 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,710 lib/bx/motif/_pwm.c:2443:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,710 2443 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,710 | ^ 2021-07-15T16:37:51,710 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,710 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,710 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,710 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,711 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,712 lib/bx/motif/_pwm.c:2459:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,712 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,712 | ^ 2021-07-15T16:37:51,712 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,712 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,712 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,712 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,712 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,713 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,713 lib/bx/motif/_pwm.c:2459:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,713 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,713 | ^ 2021-07-15T16:37:51,713 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,713 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,713 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,714 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:51,714 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:51,714 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,714 lib/bx/motif/_pwm.c:2459:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,714 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,714 | ^ 2021-07-15T16:37:51,715 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,715 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,715 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,715 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,715 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,715 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,715 lib/bx/motif/_pwm.c:2459:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,716 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,716 | ^ 2021-07-15T16:37:51,716 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,716 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,716 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,716 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,716 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,716 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,717 lib/bx/motif/_pwm.c:2459:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,717 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,717 | ^ 2021-07-15T16:37:51,717 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,717 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,717 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,717 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:51,717 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:51,718 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,718 lib/bx/motif/_pwm.c:2459:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:51,718 2459 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:51,718 | ^ 2021-07-15T16:37:51,718 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:51,718 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:51,719 from lib/bx/motif/_pwm.c:4: 2021-07-15T16:37:51,719 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:51,719 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:51,719 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:51,787 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-15T16:37:51,787 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:37:51,787 from lib/bx/motif/_pwm.c:596: 2021-07-15T16:37:51,787 At top level: 2021-07-15T16:37:51,787 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-15T16:37:51,788 1464 | _import_array(void) 2021-07-15T16:37:51,788 | ^~~~~~~~~~~~~ 2021-07-15T16:37:53,132 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/motif/_pwm.o -o build/lib.linux-armv7l-3.9/bx/motif/_pwm.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:37:53,250 building 'bx.arrays.array_tree' extension 2021-07-15T16:37:53,251 creating build/temp.linux-armv7l-3.9/lib/bx/arrays 2021-07-15T16:37:53,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/arrays/array_tree.c -o build/temp.linux-armv7l-3.9/lib/bx/arrays/array_tree.o 2021-07-15T16:37:53,627 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:37:53,627 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:37:53,627 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:37:53,627 from lib/bx/arrays/array_tree.c:598: 2021-07-15T16:37:53,628 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:37:53,628 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:37:53,628 | ^~~~~~~ 2021-07-15T16:37:54,186 lib/bx/arrays/array_tree.c: In function ‘__Pyx_import_all_from’: 2021-07-15T16:37:54,197 lib/bx/arrays/array_tree.c:21760:13: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,198 21760 | PyUnicode_AS_UNICODE(name)[0] == '_') 2021-07-15T16:37:54,198 | ^~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,198 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,198 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,198 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,198 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:54,198 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:54,199 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,338 lib/bx/arrays/array_tree.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:37:54,350 lib/bx/arrays/array_tree.c:23039:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,351 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,351 | ^ 2021-07-15T16:37:54,351 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,351 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,351 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,351 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,351 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,351 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,365 lib/bx/arrays/array_tree.c:23039:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,365 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,365 | ^ 2021-07-15T16:37:54,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,365 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,365 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,366 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:54,366 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:54,366 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,379 lib/bx/arrays/array_tree.c:23039:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,379 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,380 | ^ 2021-07-15T16:37:54,380 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,380 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,380 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,380 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,380 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,380 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,394 lib/bx/arrays/array_tree.c:23039:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,394 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,394 | ^ 2021-07-15T16:37:54,394 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,394 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,395 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,395 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,395 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,395 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,408 lib/bx/arrays/array_tree.c:23039:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,409 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,409 | ^ 2021-07-15T16:37:54,409 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,409 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,409 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,409 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:54,409 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:54,410 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,423 lib/bx/arrays/array_tree.c:23039:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,423 23039 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,423 | ^ 2021-07-15T16:37:54,424 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,424 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,424 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,424 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,424 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,440 lib/bx/arrays/array_tree.c:23055:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,441 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,441 | ^ 2021-07-15T16:37:54,441 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,441 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,441 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,441 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,441 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,455 lib/bx/arrays/array_tree.c:23055:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,455 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,455 | ^ 2021-07-15T16:37:54,456 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,456 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,456 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,456 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:54,456 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:54,456 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,470 lib/bx/arrays/array_tree.c:23055:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,470 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,470 | ^ 2021-07-15T16:37:54,470 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,470 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,470 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,471 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,471 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,471 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,484 lib/bx/arrays/array_tree.c:23055:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,485 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,485 | ^ 2021-07-15T16:37:54,485 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,485 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,485 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,485 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,485 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,485 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,499 lib/bx/arrays/array_tree.c:23055:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,499 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,499 | ^ 2021-07-15T16:37:54,500 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,500 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,500 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,500 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:37:54,500 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:37:54,500 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:37:54,513 lib/bx/arrays/array_tree.c:23055:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:37:54,514 23055 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:37:54,514 | ^ 2021-07-15T16:37:54,514 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:37:54,514 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:37:54,514 from lib/bx/arrays/array_tree.c:4: 2021-07-15T16:37:54,514 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:37:54,514 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:37:54,514 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:18,872 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/arrays/array_tree.o -o build/lib.linux-armv7l-3.9/bx/arrays/array_tree.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:38:19,075 building 'bx.bbi.bpt_file' extension 2021-07-15T16:38:19,076 creating build/temp.linux-armv7l-3.9/lib/bx/bbi 2021-07-15T16:38:19,076 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-armv7l-3.9/lib/bx/bbi/bpt_file.o 2021-07-15T16:38:19,472 lib/bx/bbi/bpt_file.c: In function ‘__pyx_pf_2bx_3bbi_8bpt_file_7BPTFile_6find’: 2021-07-15T16:38:19,473 lib/bx/bbi/bpt_file.c:2476:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T16:38:19,473 2476 | __pyx_t_2 = ((__pyx_t_1 > __pyx_v_self->key_size) != 0); 2021-07-15T16:38:19,474 | ^ 2021-07-15T16:38:19,475 lib/bx/bbi/bpt_file.c:2507:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T16:38:19,475 2507 | __pyx_t_2 = ((__pyx_t_1 < __pyx_v_self->key_size) != 0); 2021-07-15T16:38:19,475 | ^ 2021-07-15T16:38:19,519 lib/bx/bbi/bpt_file.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:38:19,521 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,521 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,521 | ^ 2021-07-15T16:38:19,522 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,522 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,522 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,522 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,522 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,522 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,524 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,524 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,524 | ^ 2021-07-15T16:38:19,525 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,525 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,525 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,525 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:19,525 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:19,525 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,526 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,527 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,527 | ^ 2021-07-15T16:38:19,527 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,527 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,527 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,527 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,527 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,527 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,529 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,529 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,529 | ^ 2021-07-15T16:38:19,529 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,529 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,530 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,530 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,530 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,531 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,531 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,531 | ^ 2021-07-15T16:38:19,532 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,532 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,532 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,532 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:19,532 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:19,532 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,534 lib/bx/bbi/bpt_file.c:4093:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,534 4093 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,534 | ^ 2021-07-15T16:38:19,534 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,534 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,534 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,534 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,534 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,537 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,537 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,537 | ^ 2021-07-15T16:38:19,537 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,537 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,537 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,538 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,538 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,538 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,539 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,539 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,539 | ^ 2021-07-15T16:38:19,540 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,540 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,540 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,540 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:19,540 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:19,540 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,541 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,542 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,542 | ^ 2021-07-15T16:38:19,542 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,542 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,542 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,542 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,542 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,542 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,544 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,544 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,544 | ^ 2021-07-15T16:38:19,544 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,544 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,545 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,545 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,545 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,545 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,546 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,546 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,547 | ^ 2021-07-15T16:38:19,547 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,547 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,547 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,547 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:19,547 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:19,547 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:19,549 lib/bx/bbi/bpt_file.c:4109:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:19,549 4109 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:19,549 | ^ 2021-07-15T16:38:19,549 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:19,549 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:19,549 from lib/bx/bbi/bpt_file.c:4: 2021-07-15T16:38:19,549 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:19,550 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:19,550 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:24,909 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bbi/bpt_file.o -o build/lib.linux-armv7l-3.9/bx/bbi/bpt_file.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:38:25,043 building 'bx.bbi.cirtree_file' extension 2021-07-15T16:38:25,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-armv7l-3.9/lib/bx/bbi/cirtree_file.o 2021-07-15T16:38:25,535 lib/bx/bbi/cirtree_file.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:38:25,538 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,538 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,539 | ^ 2021-07-15T16:38:25,540 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,540 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,540 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,540 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,540 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,540 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,544 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,544 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,544 | ^ 2021-07-15T16:38:25,544 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,544 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,544 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,545 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:25,545 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:25,545 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,548 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,548 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,548 | ^ 2021-07-15T16:38:25,549 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,549 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,549 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,549 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,549 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,549 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,553 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,553 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,553 | ^ 2021-07-15T16:38:25,553 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,553 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,554 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,554 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,554 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,554 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,557 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,557 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,558 | ^ 2021-07-15T16:38:25,558 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,558 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,558 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,558 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:25,558 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:25,559 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,562 lib/bx/bbi/cirtree_file.c:5469:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,562 5469 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,562 | ^ 2021-07-15T16:38:25,563 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,563 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,563 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,563 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,563 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,563 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,568 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,568 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,568 | ^ 2021-07-15T16:38:25,568 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,568 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,568 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,568 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,569 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,569 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,572 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,572 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,572 | ^ 2021-07-15T16:38:25,573 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,573 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,573 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,573 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:25,573 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:25,573 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,577 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,577 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,577 | ^ 2021-07-15T16:38:25,577 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,577 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,577 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,577 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,578 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,578 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,581 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,581 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,582 | ^ 2021-07-15T16:38:25,582 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,582 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,582 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,582 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,582 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,582 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,586 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,586 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,586 | ^ 2021-07-15T16:38:25,586 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,586 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,586 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,587 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:25,587 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:25,587 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:25,590 lib/bx/bbi/cirtree_file.c:5485:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:25,590 5485 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:25,590 | ^ 2021-07-15T16:38:25,591 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:25,591 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:25,591 from lib/bx/bbi/cirtree_file.c:4: 2021-07-15T16:38:25,591 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:25,591 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:25,591 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:34,798 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bbi/cirtree_file.o -o build/lib.linux-armv7l-3.9/bx/bbi/cirtree_file.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:38:34,943 building 'bx.bbi.bbi_file' extension 2021-07-15T16:38:34,943 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-armv7l-3.9/lib/bx/bbi/bbi_file.o 2021-07-15T16:38:35,330 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:38:35,330 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:38:35,330 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:38:35,330 from lib/bx/bbi/bbi_file.c:598: 2021-07-15T16:38:35,330 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:38:35,331 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:38:35,331 | ^~~~~~~ 2021-07-15T16:38:35,980 lib/bx/bbi/bbi_file.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:38:35,994 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:35,994 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:35,994 | ^ 2021-07-15T16:38:35,995 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:35,995 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:35,995 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:35,995 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:35,995 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:35,995 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,011 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,011 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,012 | ^ 2021-07-15T16:38:36,012 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,012 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,012 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,012 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:36,012 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:36,012 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,028 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,028 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,028 | ^ 2021-07-15T16:38:36,028 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,028 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,028 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,029 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,029 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,029 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,044 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,044 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,045 | ^ 2021-07-15T16:38:36,045 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,045 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,045 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,045 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,045 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,045 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,061 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,061 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,061 | ^ 2021-07-15T16:38:36,061 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,061 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,061 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,062 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:36,062 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:36,062 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,077 lib/bx/bbi/bbi_file.c:19545:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,077 19545 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,078 | ^ 2021-07-15T16:38:36,078 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,078 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,078 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,078 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,078 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,078 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,097 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,097 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,097 | ^ 2021-07-15T16:38:36,097 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,098 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,098 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,098 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,098 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,098 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,113 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,114 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,114 | ^ 2021-07-15T16:38:36,114 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,114 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,114 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,114 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:36,114 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:36,114 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,130 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,130 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,130 | ^ 2021-07-15T16:38:36,130 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,131 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,131 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,131 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,131 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,131 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,146 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,147 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,147 | ^ 2021-07-15T16:38:36,147 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,147 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,147 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,147 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,147 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,147 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,163 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,163 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,163 | ^ 2021-07-15T16:38:36,163 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,163 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,164 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,164 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:36,164 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:36,164 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:36,179 lib/bx/bbi/bbi_file.c:19561:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:36,179 19561 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:36,180 | ^ 2021-07-15T16:38:36,180 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:36,180 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:36,180 from lib/bx/bbi/bbi_file.c:4: 2021-07-15T16:38:36,180 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:36,180 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:36,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:56,690 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bbi/bbi_file.o -o build/lib.linux-armv7l-3.9/bx/bbi/bbi_file.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:38:56,889 building 'bx.bbi.bigwig_file' extension 2021-07-15T16:38:56,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-armv7l-3.9/lib/bx/bbi/bigwig_file.o 2021-07-15T16:38:57,311 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:38:57,311 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:38:57,312 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:38:57,312 from lib/bx/bbi/bigwig_file.c:598: 2021-07-15T16:38:57,312 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:38:57,312 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:38:57,312 | ^~~~~~~ 2021-07-15T16:38:57,386 lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: 2021-07-15T16:38:57,388 lib/bx/bbi/bigwig_file.c:3275:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T16:38:57,388 3275 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); 2021-07-15T16:38:57,388 | ^ 2021-07-15T16:38:57,390 lib/bx/bbi/bigwig_file.c:3304:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T16:38:57,390 3304 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); 2021-07-15T16:38:57,391 | ^ 2021-07-15T16:38:57,428 lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: 2021-07-15T16:38:57,431 lib/bx/bbi/bigwig_file.c:5183:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T16:38:57,431 5183 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { 2021-07-15T16:38:57,431 | ^ 2021-07-15T16:38:57,762 lib/bx/bbi/bigwig_file.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:38:57,770 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,770 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,771 | ^ 2021-07-15T16:38:57,771 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,772 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,772 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,772 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,772 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,782 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,782 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,782 | ^ 2021-07-15T16:38:57,782 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,783 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,783 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,783 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:57,783 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:57,783 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,793 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,793 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,793 | ^ 2021-07-15T16:38:57,793 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,793 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,794 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,794 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,794 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,794 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,804 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,804 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,804 | ^ 2021-07-15T16:38:57,804 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,804 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,804 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,805 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,805 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,805 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,815 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,815 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,815 | ^ 2021-07-15T16:38:57,815 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,815 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,815 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,815 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:57,816 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:57,816 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,825 lib/bx/bbi/bigwig_file.c:15068:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,826 15068 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,826 | ^ 2021-07-15T16:38:57,826 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,826 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,826 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,826 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,826 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,838 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,839 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,839 | ^ 2021-07-15T16:38:57,839 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,839 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,839 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,839 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,839 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,849 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,850 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,850 | ^ 2021-07-15T16:38:57,850 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,850 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,850 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,850 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:57,851 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:57,851 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,860 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,861 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,861 | ^ 2021-07-15T16:38:57,861 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,861 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,861 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,861 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,862 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,862 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,871 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,872 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,872 | ^ 2021-07-15T16:38:57,872 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,872 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,872 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,872 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,873 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,873 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,882 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,883 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,883 | ^ 2021-07-15T16:38:57,883 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,883 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,883 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,883 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:38:57,883 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:38:57,884 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:38:57,893 lib/bx/bbi/bigwig_file.c:15084:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:38:57,893 15084 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:38:57,894 | ^ 2021-07-15T16:38:57,894 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:38:57,894 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:38:57,894 from lib/bx/bbi/bigwig_file.c:4: 2021-07-15T16:38:57,894 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:38:57,894 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:38:57,894 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:06,433 lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: 2021-07-15T16:39:06,435 lib/bx/bbi/bigwig_file.c:3361:18: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:06,435 3361 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) 2021-07-15T16:39:06,436 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:06,438 lib/bx/bbi/bigwig_file.c:3304:51: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:06,438 3304 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); 2021-07-15T16:39:06,438 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T16:39:06,440 lib/bx/bbi/bigwig_file.c:3275:53: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:06,440 3275 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); 2021-07-15T16:39:06,440 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T16:39:12,650 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bbi/bigwig_file.o -o build/lib.linux-armv7l-3.9/bx/bbi/bigwig_file.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:12,823 building 'bx.bbi.bigbed_file' extension 2021-07-15T16:39:12,823 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-armv7l-3.9/lib/bx/bbi/bigbed_file.o 2021-07-15T16:39:13,226 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:39:13,226 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:39:13,227 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:39:13,227 from lib/bx/bbi/bigbed_file.c:598: 2021-07-15T16:39:13,227 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:39:13,227 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:39:13,227 | ^~~~~~~ 2021-07-15T16:39:13,527 lib/bx/bbi/bigbed_file.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:13,533 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,533 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,533 | ^ 2021-07-15T16:39:13,534 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,534 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,534 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,535 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,535 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,542 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,542 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,542 | ^ 2021-07-15T16:39:13,543 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,543 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,543 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,543 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:13,543 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:13,543 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,551 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,551 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,551 | ^ 2021-07-15T16:39:13,551 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,551 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,551 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,552 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,552 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,552 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,559 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,559 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,560 | ^ 2021-07-15T16:39:13,560 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,560 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,560 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,560 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,560 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,560 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,568 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,568 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,568 | ^ 2021-07-15T16:39:13,568 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,568 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,569 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,569 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:13,569 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:13,569 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,576 lib/bx/bbi/bigbed_file.c:11350:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,576 11350 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,576 | ^ 2021-07-15T16:39:13,577 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,577 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,577 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,577 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,577 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,577 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,586 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,587 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,587 | ^ 2021-07-15T16:39:13,587 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,587 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,587 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,587 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,588 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,588 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,596 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,596 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,596 | ^ 2021-07-15T16:39:13,596 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,597 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,597 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,597 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:13,597 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:13,597 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,606 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,606 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,606 | ^ 2021-07-15T16:39:13,606 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,607 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,607 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,607 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,607 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,607 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,613 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,614 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,614 | ^ 2021-07-15T16:39:13,614 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,614 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,614 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,614 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,614 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,614 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,621 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,621 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,621 | ^ 2021-07-15T16:39:13,621 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,621 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,621 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,621 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:13,621 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:13,622 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:13,628 lib/bx/bbi/bigbed_file.c:11366:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:13,628 11366 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:13,628 | ^ 2021-07-15T16:39:13,628 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:13,628 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:13,628 from lib/bx/bbi/bigbed_file.c:4: 2021-07-15T16:39:13,629 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:13,629 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:13,629 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:23,361 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/bbi/bigbed_file.o -o build/lib.linux-armv7l-3.9/bx/bbi/bigbed_file.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:23,514 building 'bx.align._epo' extension 2021-07-15T16:39:23,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/align/_epo.c -o build/temp.linux-armv7l-3.9/lib/bx/align/_epo.o 2021-07-15T16:39:23,892 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T16:39:23,892 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T16:39:23,892 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T16:39:23,892 from lib/bx/align/_epo.c:598: 2021-07-15T16:39:23,892 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T16:39:23,893 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T16:39:23,893 | ^~~~~~~ 2021-07-15T16:39:24,035 lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: 2021-07-15T16:39:24,038 lib/bx/align/_epo.c:5390:237: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-15T16:39:24,038 5390 | __pyx_t_4 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_19, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); 2021-07-15T16:39:24,038 | ^~ 2021-07-15T16:39:24,173 lib/bx/align/_epo.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:24,178 lib/bx/align/_epo.c:9730:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,178 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,178 | ^ 2021-07-15T16:39:24,179 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,179 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,179 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,179 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,179 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,179 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,185 lib/bx/align/_epo.c:9730:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,185 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,185 | ^ 2021-07-15T16:39:24,185 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,185 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,185 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,185 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:24,185 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:24,186 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,191 lib/bx/align/_epo.c:9730:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,191 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,191 | ^ 2021-07-15T16:39:24,191 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,191 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,191 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,192 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,192 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,192 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,197 lib/bx/align/_epo.c:9730:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,197 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,197 | ^ 2021-07-15T16:39:24,197 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,197 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,197 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,198 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,198 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,203 lib/bx/align/_epo.c:9730:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,203 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,203 | ^ 2021-07-15T16:39:24,203 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,203 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,204 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,204 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:24,204 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:24,204 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,209 lib/bx/align/_epo.c:9730:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,209 9730 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,209 | ^ 2021-07-15T16:39:24,209 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,210 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,210 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,210 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,210 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,210 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,216 lib/bx/align/_epo.c:9746:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,217 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,217 | ^ 2021-07-15T16:39:24,217 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,217 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,217 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,217 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,217 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,218 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,222 lib/bx/align/_epo.c:9746:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,223 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,223 | ^ 2021-07-15T16:39:24,223 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,223 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,223 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,223 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:24,223 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:24,224 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,229 lib/bx/align/_epo.c:9746:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,229 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,229 | ^ 2021-07-15T16:39:24,229 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,229 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,229 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,229 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,229 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,230 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,235 lib/bx/align/_epo.c:9746:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,235 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,235 | ^ 2021-07-15T16:39:24,235 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,235 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,235 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,235 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,236 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,236 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,241 lib/bx/align/_epo.c:9746:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,241 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,241 | ^ 2021-07-15T16:39:24,241 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,241 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,241 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,242 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:24,242 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:24,242 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:24,247 lib/bx/align/_epo.c:9746:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:24,247 9746 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:24,247 | ^ 2021-07-15T16:39:24,247 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:24,247 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:24,248 from lib/bx/align/_epo.c:4: 2021-07-15T16:39:24,248 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:24,248 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:24,248 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,013 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/align/_epo.o -o build/lib.linux-armv7l-3.9/bx/align/_epo.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:37,165 building 'bx.arrays.bed' extension 2021-07-15T16:39:37,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/bed.c -o build/temp.linux-armv7l-3.9/lib/bx/arrays/bed.o 2021-07-15T16:39:37,577 lib/bx/arrays/bed.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:37,578 lib/bx/arrays/bed.c:3344:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,578 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,578 | ^ 2021-07-15T16:39:37,579 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,579 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,579 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,579 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,579 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,581 lib/bx/arrays/bed.c:3344:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,581 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,581 | ^ 2021-07-15T16:39:37,581 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,581 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,581 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,581 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:37,582 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:37,582 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,583 lib/bx/arrays/bed.c:3344:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,583 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,583 | ^ 2021-07-15T16:39:37,583 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,583 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,583 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,583 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,583 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,584 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,584 lib/bx/arrays/bed.c:3344:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,585 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,585 | ^ 2021-07-15T16:39:37,585 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,585 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,585 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,585 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,585 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,586 lib/bx/arrays/bed.c:3344:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,586 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,587 | ^ 2021-07-15T16:39:37,587 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,587 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,587 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,587 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:37,587 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:37,587 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,588 lib/bx/arrays/bed.c:3344:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,588 3344 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,588 | ^ 2021-07-15T16:39:37,589 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,589 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,589 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,589 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,589 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,589 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,591 lib/bx/arrays/bed.c:3360:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,591 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,591 | ^ 2021-07-15T16:39:37,591 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,591 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,591 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,592 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,592 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,592 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,593 lib/bx/arrays/bed.c:3360:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,593 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,593 | ^ 2021-07-15T16:39:37,593 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,593 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,593 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,593 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:37,593 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:37,594 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,594 lib/bx/arrays/bed.c:3360:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,595 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,595 | ^ 2021-07-15T16:39:37,595 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,595 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,595 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,595 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,595 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,595 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,596 lib/bx/arrays/bed.c:3360:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,597 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,597 | ^ 2021-07-15T16:39:37,597 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,597 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,597 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,597 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,597 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,597 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,598 lib/bx/arrays/bed.c:3360:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,598 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,598 | ^ 2021-07-15T16:39:37,599 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,599 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,599 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,599 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:37,599 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:37,599 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:37,600 lib/bx/arrays/bed.c:3360:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:37,600 3360 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:37,600 | ^ 2021-07-15T16:39:37,601 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:37,601 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:37,601 from lib/bx/arrays/bed.c:4: 2021-07-15T16:39:37,601 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:37,601 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:37,601 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:40,647 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/arrays/bed.o -o build/lib.linux-armv7l-3.9/bx/arrays/bed.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:40,774 building 'bx.arrays.wiggle' extension 2021-07-15T16:39:40,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/wiggle.c -o build/temp.linux-armv7l-3.9/lib/bx/arrays/wiggle.o 2021-07-15T16:39:41,233 lib/bx/arrays/wiggle.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:41,235 lib/bx/arrays/wiggle.c:4916:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,235 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,235 | ^ 2021-07-15T16:39:41,236 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,236 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,236 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,236 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,236 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,236 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,238 lib/bx/arrays/wiggle.c:4916:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,239 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,239 | ^ 2021-07-15T16:39:41,239 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,239 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,239 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,239 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:41,239 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:41,239 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,241 lib/bx/arrays/wiggle.c:4916:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,241 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,242 | ^ 2021-07-15T16:39:41,242 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,242 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,242 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,242 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,242 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,242 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,244 lib/bx/arrays/wiggle.c:4916:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,244 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,244 | ^ 2021-07-15T16:39:41,245 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,245 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,245 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,245 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,245 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,245 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,247 lib/bx/arrays/wiggle.c:4916:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,247 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,247 | ^ 2021-07-15T16:39:41,247 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,248 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,248 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,248 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:41,248 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:41,248 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,250 lib/bx/arrays/wiggle.c:4916:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,250 4916 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,250 | ^ 2021-07-15T16:39:41,250 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,250 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,251 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,251 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,251 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,251 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,254 lib/bx/arrays/wiggle.c:4932:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,254 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,254 | ^ 2021-07-15T16:39:41,254 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,254 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,254 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,255 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,255 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,255 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,257 lib/bx/arrays/wiggle.c:4932:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,257 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,257 | ^ 2021-07-15T16:39:41,257 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,257 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,257 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,257 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:41,257 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:41,257 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,259 lib/bx/arrays/wiggle.c:4932:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,260 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,260 | ^ 2021-07-15T16:39:41,260 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,260 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,260 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,260 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,260 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,260 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,262 lib/bx/arrays/wiggle.c:4932:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,263 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,263 | ^ 2021-07-15T16:39:41,263 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,263 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,263 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,263 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,263 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,263 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,265 lib/bx/arrays/wiggle.c:4932:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,265 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,266 | ^ 2021-07-15T16:39:41,266 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,266 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,266 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,266 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:41,266 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:41,266 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:41,268 lib/bx/arrays/wiggle.c:4932:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:41,268 4932 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:41,268 | ^ 2021-07-15T16:39:41,269 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:41,269 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:41,269 from lib/bx/arrays/wiggle.c:4: 2021-07-15T16:39:41,269 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:41,269 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:41,269 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,061 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/arrays/wiggle.o -o build/lib.linux-armv7l-3.9/bx/arrays/wiggle.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:47,197 building 'bx.align.sitemask._cpg' extension 2021-07-15T16:39:47,198 creating build/temp.linux-armv7l-3.9/lib/bx/align/sitemask 2021-07-15T16:39:47,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-armv7l-3.9/lib/bx/align/sitemask/_cpg.o 2021-07-15T16:39:47,622 lib/bx/align/sitemask/_cpg.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:47,624 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,624 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,624 | ^ 2021-07-15T16:39:47,625 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,625 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,625 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,625 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,625 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,626 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,628 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,628 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,628 | ^ 2021-07-15T16:39:47,628 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,628 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,629 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,629 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:47,629 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:47,629 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,631 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,631 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,631 | ^ 2021-07-15T16:39:47,632 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,632 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,632 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,632 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,632 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,632 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,633 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,633 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,634 | ^ 2021-07-15T16:39:47,634 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,634 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,634 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,634 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,634 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,634 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,635 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,635 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,636 | ^ 2021-07-15T16:39:47,636 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,636 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,636 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,636 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:47,636 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:47,636 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,637 lib/bx/align/sitemask/_cpg.c:3861:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,638 3861 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,638 | ^ 2021-07-15T16:39:47,638 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,638 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,638 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,638 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,638 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,638 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,640 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,641 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,641 | ^ 2021-07-15T16:39:47,641 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,641 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,641 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,641 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,641 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,641 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,642 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,643 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,643 | ^ 2021-07-15T16:39:47,643 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,643 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,643 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,643 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:47,643 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:47,643 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,645 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,645 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,645 | ^ 2021-07-15T16:39:47,645 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,645 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,645 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,645 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,645 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,646 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,647 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,647 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,647 | ^ 2021-07-15T16:39:47,647 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,647 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,647 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,647 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,648 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,648 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,649 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,649 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,649 | ^ 2021-07-15T16:39:47,649 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,649 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,649 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,650 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:47,650 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:47,650 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:47,651 lib/bx/align/sitemask/_cpg.c:3877:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:47,651 3877 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:47,651 | ^ 2021-07-15T16:39:47,651 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:47,651 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:47,652 from lib/bx/align/sitemask/_cpg.c:4: 2021-07-15T16:39:47,652 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:47,652 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:47,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-armv7l-3.9/lib/bx/align/sitemask/find_cpg.o 2021-07-15T16:39:51,225 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/align/sitemask/_cpg.o build/temp.linux-armv7l-3.9/lib/bx/align/sitemask/find_cpg.o -o build/lib.linux-armv7l-3.9/bx/align/sitemask/_cpg.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:51,350 building 'bx.intseq.ngramcount' extension 2021-07-15T16:39:51,351 creating build/temp.linux-armv7l-3.9/lib/bx/intseq 2021-07-15T16:39:51,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-armv7l-3.9/lib/bx/intseq/ngramcount.o 2021-07-15T16:39:51,760 lib/bx/intseq/ngramcount.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:51,761 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,761 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,762 | ^ 2021-07-15T16:39:51,762 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,762 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,762 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,762 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,762 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,763 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,763 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,763 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,764 | ^ 2021-07-15T16:39:51,764 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,764 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,764 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,764 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:51,764 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:51,764 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,765 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,765 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,765 | ^ 2021-07-15T16:39:51,765 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,765 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,765 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,765 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,765 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,766 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,766 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,766 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,766 | ^ 2021-07-15T16:39:51,766 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,766 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,767 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,767 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,767 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,767 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,767 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,767 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,768 | ^ 2021-07-15T16:39:51,768 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,768 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,768 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,768 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:51,768 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:51,768 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,769 lib/bx/intseq/ngramcount.c:2556:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,769 2556 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,769 | ^ 2021-07-15T16:39:51,769 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,769 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,769 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,770 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,770 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,770 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,771 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,771 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,771 | ^ 2021-07-15T16:39:51,771 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,771 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,771 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,772 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,772 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,772 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,772 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,772 | ^ 2021-07-15T16:39:51,773 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,773 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,773 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,773 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:51,773 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:51,773 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,774 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,774 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,774 | ^ 2021-07-15T16:39:51,774 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,774 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,774 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,774 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,774 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,775 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,775 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,775 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,775 | ^ 2021-07-15T16:39:51,775 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,776 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,776 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,776 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,776 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,776 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,776 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,777 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,777 | ^ 2021-07-15T16:39:51,777 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,777 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,777 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,777 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:51,777 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:51,777 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:51,778 lib/bx/intseq/ngramcount.c:2572:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:51,778 2572 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:51,778 | ^ 2021-07-15T16:39:51,778 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:51,778 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:51,778 from lib/bx/intseq/ngramcount.c:4: 2021-07-15T16:39:51,779 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:51,779 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:51,779 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,049 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/intseq/ngramcount.o -o build/lib.linux-armv7l-3.9/bx/intseq/ngramcount.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:54,168 building 'bx.misc._seekbzip2' extension 2021-07-15T16:39:54,170 creating build/temp.linux-armv7l-3.9/src/bunzip 2021-07-15T16:39:54,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-armv7l-3.9/lib/bx/misc/_seekbzip2.o 2021-07-15T16:39:54,588 lib/bx/misc/_seekbzip2.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T16:39:54,590 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,590 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,590 | ^ 2021-07-15T16:39:54,591 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,591 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,591 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,592 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,592 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,592 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,594 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,594 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,594 | ^ 2021-07-15T16:39:54,595 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,595 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,595 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,595 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:54,595 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:54,595 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,598 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,598 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,598 | ^ 2021-07-15T16:39:54,598 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,598 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,599 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,599 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,599 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,599 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,601 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,602 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,602 | ^ 2021-07-15T16:39:54,602 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,602 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,602 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,602 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,602 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,603 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,605 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,605 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,605 | ^ 2021-07-15T16:39:54,605 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,606 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,606 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,606 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:54,606 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:54,606 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,608 lib/bx/misc/_seekbzip2.c:3313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,609 3313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,609 | ^ 2021-07-15T16:39:54,609 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,609 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,609 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,609 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,609 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,610 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,613 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,613 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,613 | ^ 2021-07-15T16:39:54,614 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,614 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,614 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,614 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,614 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,614 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,618 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,618 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,618 | ^ 2021-07-15T16:39:54,618 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,618 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,619 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,619 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:54,619 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:54,619 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,622 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,622 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,623 | ^ 2021-07-15T16:39:54,623 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,623 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,623 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,623 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,623 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,624 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,627 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,627 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,627 | ^ 2021-07-15T16:39:54,628 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,628 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,628 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,628 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,628 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,629 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,632 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,632 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,632 | ^ 2021-07-15T16:39:54,632 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,633 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,633 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,633 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T16:39:54,633 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T16:39:54,633 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:54,637 lib/bx/misc/_seekbzip2.c:3329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T16:39:54,637 3329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T16:39:54,637 | ^ 2021-07-15T16:39:54,637 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T16:39:54,637 from /usr/include/python3.9/Python.h:97, 2021-07-15T16:39:54,638 from lib/bx/misc/_seekbzip2.c:4: 2021-07-15T16:39:54,638 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T16:39:54,638 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T16:39:54,638 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T16:39:56,939 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c src/bunzip/micro-bunzip.c -o build/temp.linux-armv7l-3.9/src/bunzip/micro-bunzip.o 2021-07-15T16:39:57,077 src/bunzip/micro-bunzip.c: In function ‘get_next_block’: 2021-07-15T16:39:57,078 src/bunzip/micro-bunzip.c:151:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T16:39:57,078 151 | if((origPtr=get_bits(bd,24)) > dbufSize) return RETVAL_DATA_ERROR; 2021-07-15T16:39:57,078 | ^ 2021-07-15T16:39:57,081 src/bunzip/micro-bunzip.c:298:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T16:39:57,081 298 | while (bd->inbufBitCountmaxLen) { 2021-07-15T16:39:57,081 | ^ 2021-07-15T16:39:57,083 src/bunzip/micro-bunzip.c:400:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T16:39:57,083 400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; 2021-07-15T16:39:57,083 | ^~ 2021-07-15T16:39:57,087 src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: 2021-07-15T16:39:57,087 src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 2021-07-15T16:39:57,087 629 | bd->inbuf=inbuf; 2021-07-15T16:39:57,087 | ^ 2021-07-15T16:39:57,310 src/bunzip/micro-bunzip.c: In function ‘get_next_block’: 2021-07-15T16:39:57,311 src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:57,311 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, 2021-07-15T16:39:57,311 | ^~~~~ 2021-07-15T16:39:57,311 src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:57,311 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, 2021-07-15T16:39:57,311 | ^~~~ 2021-07-15T16:39:57,312 src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T16:39:57,312 128 | struct group_data *hufGroup; 2021-07-15T16:39:57,312 | ^~~~~~~~ 2021-07-15T16:39:57,689 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/lib/bx/misc/_seekbzip2.o build/temp.linux-armv7l-3.9/src/bunzip/micro-bunzip.o -o build/lib.linux-armv7l-3.9/bx/misc/_seekbzip2.cpython-39-arm-linux-gnueabihf.so 2021-07-15T16:39:57,809 running build_scripts 2021-07-15T16:39:57,811 creating build/scripts-3.9 2021-07-15T16:39:57,812 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.9 2021-07-15T16:39:57,816 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.9 2021-07-15T16:39:57,818 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.9 2021-07-15T16:39:57,820 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.9 2021-07-15T16:39:57,822 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.9 2021-07-15T16:39:57,824 copying and adjusting scripts/maf_filter.py -> build/scripts-3.9 2021-07-15T16:39:57,826 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.9 2021-07-15T16:39:57,828 copying and adjusting scripts/line_select.py -> build/scripts-3.9 2021-07-15T16:39:57,830 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.9 2021-07-15T16:39:57,833 copying and adjusting scripts/pretty_table.py -> build/scripts-3.9 2021-07-15T16:39:57,835 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.9 2021-07-15T16:39:57,836 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.9 2021-07-15T16:39:57,838 copying and adjusting scripts/mask_quality.py -> build/scripts-3.9 2021-07-15T16:39:57,840 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.9 2021-07-15T16:39:57,842 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.9 2021-07-15T16:39:57,844 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.9 2021-07-15T16:39:57,845 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.9 2021-07-15T16:39:57,848 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.9 2021-07-15T16:39:57,849 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.9 2021-07-15T16:39:57,851 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.9 2021-07-15T16:39:57,853 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.9 2021-07-15T16:39:57,855 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.9 2021-07-15T16:39:57,857 copying and adjusting scripts/maf_count.py -> build/scripts-3.9 2021-07-15T16:39:57,859 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.9 2021-07-15T16:39:57,860 copying and adjusting scripts/interval_join.py -> build/scripts-3.9 2021-07-15T16:39:57,862 copying and adjusting scripts/bnMapper.py -> build/scripts-3.9 2021-07-15T16:39:57,865 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.9 2021-07-15T16:39:57,867 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.9 2021-07-15T16:39:57,869 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.9 2021-07-15T16:39:57,871 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.9 2021-07-15T16:39:57,872 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.9 2021-07-15T16:39:57,874 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.9 2021-07-15T16:39:57,876 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.9 2021-07-15T16:39:57,878 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.9 2021-07-15T16:39:57,880 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.9 2021-07-15T16:39:57,882 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.9 2021-07-15T16:39:57,883 copying and adjusting scripts/maf_chop.py -> build/scripts-3.9 2021-07-15T16:39:57,885 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.9 2021-07-15T16:39:57,887 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.9 2021-07-15T16:39:57,889 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.9 2021-07-15T16:39:57,891 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.9 2021-07-15T16:39:57,893 copying and adjusting scripts/table_add_column.py -> build/scripts-3.9 2021-07-15T16:39:57,895 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.9 2021-07-15T16:39:57,897 copying and adjusting scripts/maf_tile.py -> build/scripts-3.9 2021-07-15T16:39:57,899 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.9 2021-07-15T16:39:57,901 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.9 2021-07-15T16:39:57,903 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.9 2021-07-15T16:39:57,905 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.9 2021-07-15T16:39:57,907 copying and adjusting scripts/maf_select.py -> build/scripts-3.9 2021-07-15T16:39:57,909 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.9 2021-07-15T16:39:57,911 copying and adjusting scripts/align_print_template.py -> build/scripts-3.9 2021-07-15T16:39:57,913 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.9 2021-07-15T16:39:57,915 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.9 2021-07-15T16:39:57,916 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.9 2021-07-15T16:39:57,918 copying and adjusting scripts/nib_length.py -> build/scripts-3.9 2021-07-15T16:39:57,920 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.9 2021-07-15T16:39:57,922 copying and adjusting scripts/bed_complement.py -> build/scripts-3.9 2021-07-15T16:39:57,924 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.9 2021-07-15T16:39:57,925 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.9 2021-07-15T16:39:57,927 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.9 2021-07-15T16:39:57,929 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.9 2021-07-15T16:39:57,931 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.9 2021-07-15T16:39:57,933 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.9 2021-07-15T16:39:57,935 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.9 2021-07-15T16:39:57,936 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.9 2021-07-15T16:39:57,938 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.9 2021-07-15T16:39:57,940 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.9 2021-07-15T16:39:57,942 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.9 2021-07-15T16:39:57,944 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.9 2021-07-15T16:39:57,945 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.9 2021-07-15T16:39:57,948 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.9 2021-07-15T16:39:57,950 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.9 2021-07-15T16:39:57,951 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.9 2021-07-15T16:39:57,953 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.9 2021-07-15T16:39:57,955 copying and adjusting scripts/random_lines.py -> build/scripts-3.9 2021-07-15T16:39:57,956 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.9 2021-07-15T16:39:57,958 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.9 2021-07-15T16:39:57,961 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.9 2021-07-15T16:39:57,962 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.9 2021-07-15T16:39:57,964 copying and adjusting scripts/table_filter.py -> build/scripts-3.9 2021-07-15T16:39:57,966 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.9 2021-07-15T16:39:57,968 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.9 2021-07-15T16:39:57,969 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.9 2021-07-15T16:39:57,971 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.9 2021-07-15T16:39:57,973 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.9 2021-07-15T16:39:57,975 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.9 2021-07-15T16:39:57,976 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.9 2021-07-15T16:39:57,978 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.9 2021-07-15T16:39:57,980 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.9 2021-07-15T16:39:57,982 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.9 2021-07-15T16:39:57,984 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.9 2021-07-15T16:39:57,986 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.9 2021-07-15T16:39:57,988 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.9 2021-07-15T16:39:57,989 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.9 2021-07-15T16:39:57,991 changing mode of build/scripts-3.9/maf_extract_ranges_indexed.py from 644 to 755 2021-07-15T16:39:57,991 changing mode of build/scripts-3.9/maf_translate_chars.py from 644 to 755 2021-07-15T16:39:57,992 changing mode of build/scripts-3.9/wiggle_to_chr_binned_array.py from 644 to 755 2021-07-15T16:39:57,992 changing mode of build/scripts-3.9/maf_build_index.py from 644 to 755 2021-07-15T16:39:57,993 changing mode of build/scripts-3.9/interval_count_intersections.py from 644 to 755 2021-07-15T16:39:57,993 changing mode of build/scripts-3.9/maf_filter.py from 644 to 755 2021-07-15T16:39:57,994 changing mode of build/scripts-3.9/one_field_per_line.py from 644 to 755 2021-07-15T16:39:57,994 changing mode of build/scripts-3.9/line_select.py from 644 to 755 2021-07-15T16:39:57,995 changing mode of build/scripts-3.9/nib_intervals_to_fasta.py from 644 to 755 2021-07-15T16:39:57,995 changing mode of build/scripts-3.9/pretty_table.py from 644 to 755 2021-07-15T16:39:57,996 changing mode of build/scripts-3.9/maf_covered_ranges.py from 644 to 755 2021-07-15T16:39:57,997 changing mode of build/scripts-3.9/bed_build_windows.py from 644 to 755 2021-07-15T16:39:57,997 changing mode of build/scripts-3.9/mask_quality.py from 644 to 755 2021-07-15T16:39:57,998 changing mode of build/scripts-3.9/maf_interval_alignibility.py from 644 to 755 2021-07-15T16:39:57,998 changing mode of build/scripts-3.9/bed_coverage_by_interval.py from 644 to 755 2021-07-15T16:39:57,999 changing mode of build/scripts-3.9/bed_intersect_basewise.py from 644 to 755 2021-07-15T16:39:57,999 changing mode of build/scripts-3.9/mMK_bitset.py from 644 to 755 2021-07-15T16:39:58,000 changing mode of build/scripts-3.9/maf_mean_length_ungapped_piece.py from 644 to 755 2021-07-15T16:39:58,000 changing mode of build/scripts-3.9/maf_to_concat_fasta.py from 644 to 755 2021-07-15T16:39:58,001 changing mode of build/scripts-3.9/bed_diff_basewise_summary.py from 644 to 755 2021-07-15T16:39:58,001 changing mode of build/scripts-3.9/maf_extract_ranges.py from 644 to 755 2021-07-15T16:39:58,002 changing mode of build/scripts-3.9/find_in_sorted_file.py from 644 to 755 2021-07-15T16:39:58,002 changing mode of build/scripts-3.9/maf_count.py from 644 to 755 2021-07-15T16:39:58,003 changing mode of build/scripts-3.9/prefix_lines.py from 644 to 755 2021-07-15T16:39:58,003 changing mode of build/scripts-3.9/interval_join.py from 644 to 755 2021-07-15T16:39:58,004 changing mode of build/scripts-3.9/bnMapper.py from 644 to 755 2021-07-15T16:39:58,004 changing mode of build/scripts-3.9/wiggle_to_array_tree.py from 644 to 755 2021-07-15T16:39:58,005 changing mode of build/scripts-3.9/bed_extend_to.py from 644 to 755 2021-07-15T16:39:58,005 changing mode of build/scripts-3.9/maf_region_coverage_by_src.py from 644 to 755 2021-07-15T16:39:58,006 changing mode of build/scripts-3.9/lav_to_axt.py from 644 to 755 2021-07-15T16:39:58,006 changing mode of build/scripts-3.9/lzop_build_offset_table.py from 644 to 755 2021-07-15T16:39:58,007 changing mode of build/scripts-3.9/maf_extract_chrom_ranges.py from 644 to 755 2021-07-15T16:39:58,007 changing mode of build/scripts-3.9/maf_gc_content.py from 644 to 755 2021-07-15T16:39:58,008 changing mode of build/scripts-3.9/maf_filter_max_wc.py from 644 to 755 2021-07-15T16:39:58,008 changing mode of build/scripts-3.9/qv_to_bqv.py from 644 to 755 2021-07-15T16:39:58,009 changing mode of build/scripts-3.9/maf_percent_columns_matching.py from 644 to 755 2021-07-15T16:39:58,010 changing mode of build/scripts-3.9/maf_chop.py from 644 to 755 2021-07-15T16:39:58,010 changing mode of build/scripts-3.9/lav_to_maf.py from 644 to 755 2021-07-15T16:39:58,011 changing mode of build/scripts-3.9/maf_div_sites.py from 644 to 755 2021-07-15T16:39:58,011 changing mode of build/scripts-3.9/div_snp_table_chr.py from 644 to 755 2021-07-15T16:39:58,012 changing mode of build/scripts-3.9/maf_truncate.py from 644 to 755 2021-07-15T16:39:58,012 changing mode of build/scripts-3.9/table_add_column.py from 644 to 755 2021-07-15T16:39:58,013 changing mode of build/scripts-3.9/bed_merge_overlapping.py from 644 to 755 2021-07-15T16:39:58,013 changing mode of build/scripts-3.9/maf_tile.py from 644 to 755 2021-07-15T16:39:58,014 changing mode of build/scripts-3.9/maf_randomize.py from 644 to 755 2021-07-15T16:39:58,014 changing mode of build/scripts-3.9/gene_fourfold_sites.py from 644 to 755 2021-07-15T16:39:58,015 changing mode of build/scripts-3.9/axt_to_maf.py from 644 to 755 2021-07-15T16:39:58,015 changing mode of build/scripts-3.9/maf_split_by_src.py from 644 to 755 2021-07-15T16:39:58,016 changing mode of build/scripts-3.9/maf_select.py from 644 to 755 2021-07-15T16:39:58,016 changing mode of build/scripts-3.9/maf_to_int_seqs.py from 644 to 755 2021-07-15T16:39:58,017 changing mode of build/scripts-3.9/align_print_template.py from 644 to 755 2021-07-15T16:39:58,018 changing mode of build/scripts-3.9/get_scores_in_intervals.py from 644 to 755 2021-07-15T16:39:58,018 changing mode of build/scripts-3.9/bed_coverage.py from 644 to 755 2021-07-15T16:39:58,019 changing mode of build/scripts-3.9/maf_col_counts_all.py from 644 to 755 2021-07-15T16:39:58,019 changing mode of build/scripts-3.9/nib_length.py from 644 to 755 2021-07-15T16:39:58,020 changing mode of build/scripts-3.9/bed_intersect.py from 644 to 755 2021-07-15T16:39:58,020 changing mode of build/scripts-3.9/bed_complement.py from 644 to 755 2021-07-15T16:39:58,021 changing mode of build/scripts-3.9/bed_bigwig_profile.py from 644 to 755 2021-07-15T16:39:58,021 changing mode of build/scripts-3.9/maf_gap_frequency.py from 644 to 755 2021-07-15T16:39:58,022 changing mode of build/scripts-3.9/ucsc_gene_table_to_intervals.py from 644 to 755 2021-07-15T16:39:58,022 changing mode of build/scripts-3.9/maf_species_in_all_files.py from 644 to 755 2021-07-15T16:39:58,023 changing mode of build/scripts-3.9/maf_drop_overlapping.py from 644 to 755 2021-07-15T16:39:58,023 changing mode of build/scripts-3.9/maf_print_chroms.py from 644 to 755 2021-07-15T16:39:58,024 changing mode of build/scripts-3.9/tfloc_summary.py from 644 to 755 2021-07-15T16:39:58,024 changing mode of build/scripts-3.9/nib_chrom_intervals_to_fasta.py from 644 to 755 2021-07-15T16:39:58,025 changing mode of build/scripts-3.9/maf_col_counts.py from 644 to 755 2021-07-15T16:39:58,025 changing mode of build/scripts-3.9/axt_extract_ranges.py from 644 to 755 2021-07-15T16:39:58,026 changing mode of build/scripts-3.9/wiggle_to_binned_array.py from 644 to 755 2021-07-15T16:39:58,026 changing mode of build/scripts-3.9/int_seqs_to_char_strings.py from 644 to 755 2021-07-15T16:39:58,027 changing mode of build/scripts-3.9/maf_tile_2.py from 644 to 755 2021-07-15T16:39:58,027 changing mode of build/scripts-3.9/maf_to_axt.py from 644 to 755 2021-07-15T16:39:58,027 changing mode of build/scripts-3.9/maf_limit_to_species.py from 644 to 755 2021-07-15T16:39:58,028 changing mode of build/scripts-3.9/maf_covered_regions.py from 644 to 755 2021-07-15T16:39:58,028 changing mode of build/scripts-3.9/maf_print_scores.py from 644 to 755 2021-07-15T16:39:58,029 changing mode of build/scripts-3.9/random_lines.py from 644 to 755 2021-07-15T16:39:58,029 changing mode of build/scripts-3.9/wiggle_to_simple.py from 644 to 755 2021-07-15T16:39:58,030 changing mode of build/scripts-3.9/bed_rand_intersect.py from 644 to 755 2021-07-15T16:39:58,030 changing mode of build/scripts-3.9/maf_shuffle_columns.py from 644 to 755 2021-07-15T16:39:58,031 changing mode of build/scripts-3.9/out_to_chain.py from 644 to 755 2021-07-15T16:39:58,031 changing mode of build/scripts-3.9/table_filter.py from 644 to 755 2021-07-15T16:39:58,032 changing mode of build/scripts-3.9/bed_count_by_interval.py from 644 to 755 2021-07-15T16:39:58,032 changing mode of build/scripts-3.9/maf_thread_for_species.py from 644 to 755 2021-07-15T16:39:58,033 changing mode of build/scripts-3.9/axt_to_fasta.py from 644 to 755 2021-07-15T16:39:58,033 changing mode of build/scripts-3.9/aggregate_scores_in_intervals.py from 644 to 755 2021-07-15T16:39:58,034 changing mode of build/scripts-3.9/bed_count_overlapping.py from 644 to 755 2021-07-15T16:39:58,034 changing mode of build/scripts-3.9/maf_mask_cpg.py from 644 to 755 2021-07-15T16:39:58,035 changing mode of build/scripts-3.9/axt_to_lav.py from 644 to 755 2021-07-15T16:39:58,035 changing mode of build/scripts-3.9/maf_percent_identity.py from 644 to 755 2021-07-15T16:39:58,036 changing mode of build/scripts-3.9/maf_tile_2bit.py from 644 to 755 2021-07-15T16:39:58,036 changing mode of build/scripts-3.9/maf_mapping_word_frequency.py from 644 to 755 2021-07-15T16:39:58,037 changing mode of build/scripts-3.9/maf_chunk.py from 644 to 755 2021-07-15T16:39:58,037 changing mode of build/scripts-3.9/maf_to_fasta.py from 644 to 755 2021-07-15T16:39:58,038 changing mode of build/scripts-3.9/maf_word_frequency.py from 644 to 755 2021-07-15T16:39:58,038 changing mode of build/scripts-3.9/bed_subtract_basewise.py from 644 to 755 2021-07-15T16:39:58,048 installing to build/bdist.linux-armv7l/wheel 2021-07-15T16:39:58,048 running install 2021-07-15T16:39:58,050 running install_lib 2021-07-15T16:39:58,055 creating build/bdist.linux-armv7l 2021-07-15T16:39:58,056 creating build/bdist.linux-armv7l/wheel 2021-07-15T16:39:58,058 creating build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,059 copying build/lib.linux-armv7l-3.9/bx/__init__.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,061 copying build/lib.linux-armv7l-3.9/bx/filter.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,063 copying build/lib.linux-armv7l-3.9/bx/interval_index_file.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,066 creating build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,067 copying build/lib.linux-armv7l-3.9/bx/bbi/__init__.py -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,069 copying build/lib.linux-armv7l-3.9/bx/bbi/bigwig_file.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,105 copying build/lib.linux-armv7l-3.9/bx/bbi/bigbed_file.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,125 copying build/lib.linux-armv7l-3.9/bx/bbi/cirtree_file.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,148 copying build/lib.linux-armv7l-3.9/bx/bbi/bigwig_tests.py -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,151 copying build/lib.linux-armv7l-3.9/bx/bbi/bpt_file.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,164 copying build/lib.linux-armv7l-3.9/bx/bbi/bbi_file.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/bbi 2021-07-15T16:39:58,216 copying build/lib.linux-armv7l-3.9/bx/_seqmapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,236 copying build/lib.linux-armv7l-3.9/bx/wiggle_tests.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,244 creating build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,246 copying build/lib.linux-armv7l-3.9/bx/seq/core.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,253 copying build/lib.linux-armv7l-3.9/bx/seq/__init__.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,259 copying build/lib.linux-armv7l-3.9/bx/seq/qdna.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,266 copying build/lib.linux-armv7l-3.9/bx/seq/nib.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,272 copying build/lib.linux-armv7l-3.9/bx/seq/_twobit.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,288 copying build/lib.linux-armv7l-3.9/bx/seq/twobit.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,291 copying build/lib.linux-armv7l-3.9/bx/seq/fasta.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,293 copying build/lib.linux-armv7l-3.9/bx/seq/twobit_tests.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,295 copying build/lib.linux-armv7l-3.9/bx/seq/fasta_tests.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,297 copying build/lib.linux-armv7l-3.9/bx/seq/seq_tests.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,299 copying build/lib.linux-armv7l-3.9/bx/seq/_nib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,304 copying build/lib.linux-armv7l-3.9/bx/seq/qdna_tests.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,306 copying build/lib.linux-armv7l-3.9/bx/seq/seq.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,309 copying build/lib.linux-armv7l-3.9/bx/seq/nib_tests.py -> build/bdist.linux-armv7l/wheel/bx/seq 2021-07-15T16:39:58,312 creating build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,313 copying build/lib.linux-armv7l-3.9/bx/pwm/pwm_score_maf.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,315 copying build/lib.linux-armv7l-3.9/bx/pwm/bed_score_aligned_string.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,318 copying build/lib.linux-armv7l-3.9/bx/pwm/__init__.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,320 copying build/lib.linux-armv7l-3.9/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,322 copying build/lib.linux-armv7l-3.9/bx/pwm/maf_select_motifs.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,324 copying build/lib.linux-armv7l-3.9/bx/pwm/pwm_score_positions.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,326 copying build/lib.linux-armv7l-3.9/bx/pwm/pwm_score_motifs.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,328 copying build/lib.linux-armv7l-3.9/bx/pwm/pwm_tests.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,330 copying build/lib.linux-armv7l-3.9/bx/pwm/_position_weight_matrix.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,335 copying build/lib.linux-armv7l-3.9/bx/pwm/position_weight_matrix.py -> build/bdist.linux-armv7l/wheel/bx/pwm 2021-07-15T16:39:58,338 copying build/lib.linux-armv7l-3.9/bx/binned_array_tests.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,341 creating build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,342 copying build/lib.linux-armv7l-3.9/bx/phylo/__init__.py -> build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,345 copying build/lib.linux-armv7l-3.9/bx/phylo/phast.py -> build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,347 copying build/lib.linux-armv7l-3.9/bx/phylo/newick_tests.py -> build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,349 copying build/lib.linux-armv7l-3.9/bx/phylo/newick.py -> build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,351 copying build/lib.linux-armv7l-3.9/bx/phylo/phast_tests.py -> build/bdist.linux-armv7l/wheel/bx/phylo 2021-07-15T16:39:58,353 copying build/lib.linux-armv7l-3.9/bx/gene_reader.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,356 copying build/lib.linux-armv7l-3.9/bx/bitset_utils.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,358 copying build/lib.linux-armv7l-3.9/bx/interval_index_file_tests.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,361 creating build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,362 copying build/lib.linux-armv7l-3.9/bx/arrays/__init__.py -> build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,364 copying build/lib.linux-armv7l-3.9/bx/arrays/wiggle.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,376 copying build/lib.linux-armv7l-3.9/bx/arrays/bed.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,383 copying build/lib.linux-armv7l-3.9/bx/arrays/array_tree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,423 copying build/lib.linux-armv7l-3.9/bx/arrays/array_tree_tests.py -> build/bdist.linux-armv7l/wheel/bx/arrays 2021-07-15T16:39:58,426 creating build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,426 copying build/lib.linux-armv7l-3.9/bx/cookbook/progress_bar.py -> build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,428 copying build/lib.linux-armv7l-3.9/bx/cookbook/__init__.py -> build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,430 copying build/lib.linux-armv7l-3.9/bx/cookbook/doc_optparse.py -> build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,431 copying build/lib.linux-armv7l-3.9/bx/cookbook/argparse.py -> build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,435 copying build/lib.linux-armv7l-3.9/bx/cookbook/attribute.py -> build/bdist.linux-armv7l/wheel/bx/cookbook 2021-07-15T16:39:58,437 copying build/lib.linux-armv7l-3.9/bx/bitset_tests.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,439 copying build/lib.linux-armv7l-3.9/bx/wiggle.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,441 creating build/bdist.linux-armv7l/wheel/bx/intseq 2021-07-15T16:39:58,442 copying build/lib.linux-armv7l-3.9/bx/intseq/__init__.py -> build/bdist.linux-armv7l/wheel/bx/intseq 2021-07-15T16:39:58,444 copying build/lib.linux-armv7l-3.9/bx/intseq/ngramcount.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/intseq 2021-07-15T16:39:58,451 creating build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,452 copying build/lib.linux-armv7l-3.9/bx/misc/__init__.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,455 copying build/lib.linux-armv7l-3.9/bx/misc/filecache.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,457 copying build/lib.linux-armv7l-3.9/bx/misc/readlengths.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,459 copying build/lib.linux-armv7l-3.9/bx/misc/seeklzop_tests.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,461 copying build/lib.linux-armv7l-3.9/bx/misc/cdb_tests.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,463 copying build/lib.linux-armv7l-3.9/bx/misc/cdb.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,465 copying build/lib.linux-armv7l-3.9/bx/misc/seeklzop.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,467 copying build/lib.linux-armv7l-3.9/bx/misc/filecache_tests.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,469 copying build/lib.linux-armv7l-3.9/bx/misc/_seekbzip2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,480 copying build/lib.linux-armv7l-3.9/bx/misc/bgzf_tests.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,481 copying build/lib.linux-armv7l-3.9/bx/misc/binary_file.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,484 copying build/lib.linux-armv7l-3.9/bx/misc/seekbzip2.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,486 copying build/lib.linux-armv7l-3.9/bx/misc/seekbzip2_tests.py -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,488 copying build/lib.linux-armv7l-3.9/bx/misc/bgzf.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/misc 2021-07-15T16:39:58,496 creating build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,497 copying build/lib.linux-armv7l-3.9/bx/align/core.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,499 copying build/lib.linux-armv7l-3.9/bx/align/__init__.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,501 copying build/lib.linux-armv7l-3.9/bx/align/maf_tests.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,503 copying build/lib.linux-armv7l-3.9/bx/align/maf.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,506 copying build/lib.linux-armv7l-3.9/bx/align/axt.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,508 copying build/lib.linux-armv7l-3.9/bx/align/score.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,510 copying build/lib.linux-armv7l-3.9/bx/align/epo_tests.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,513 copying build/lib.linux-armv7l-3.9/bx/align/_core.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,518 copying build/lib.linux-armv7l-3.9/bx/align/lav_tests.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,519 copying build/lib.linux-armv7l-3.9/bx/align/lav.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,522 copying build/lib.linux-armv7l-3.9/bx/align/epo.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,525 copying build/lib.linux-armv7l-3.9/bx/align/score_tests.py -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,527 copying build/lib.linux-armv7l-3.9/bx/align/_epo.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/align 2021-07-15T16:39:58,550 creating build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,551 copying build/lib.linux-armv7l-3.9/bx/align/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,553 copying build/lib.linux-armv7l-3.9/bx/align/tools/chop.py -> build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,555 copying build/lib.linux-armv7l-3.9/bx/align/tools/tile.py -> build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,556 copying build/lib.linux-armv7l-3.9/bx/align/tools/thread.py -> build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,558 copying build/lib.linux-armv7l-3.9/bx/align/tools/fuse.py -> build/bdist.linux-armv7l/wheel/bx/align/tools 2021-07-15T16:39:58,561 creating build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,562 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/core.py -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,564 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/__init__.py -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,566 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/_cpg.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,574 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/quality.py -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,576 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/cpg.py -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,578 copying build/lib.linux-armv7l-3.9/bx/align/sitemask/sitemask_tests.py -> build/bdist.linux-armv7l/wheel/bx/align/sitemask 2021-07-15T16:39:58,580 creating build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,581 copying build/lib.linux-armv7l-3.9/bx/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,584 creating build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,585 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/__init__.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,587 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/base_coverage.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,589 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/join.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,591 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/concat.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,593 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/intersect.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,595 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/subtract.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,597 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/quicksect.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,599 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/find_clusters.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,601 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/coverage.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,603 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/merge.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,605 copying build/lib.linux-armv7l-3.9/bx/intervals/operations/complement.py -> build/bdist.linux-armv7l/wheel/bx/intervals/operations 2021-07-15T16:39:58,607 copying build/lib.linux-armv7l-3.9/bx/intervals/random_intervals.py -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,610 copying build/lib.linux-armv7l-3.9/bx/intervals/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,628 copying build/lib.linux-armv7l-3.9/bx/intervals/io.py -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,631 copying build/lib.linux-armv7l-3.9/bx/intervals/intersection_tests.py -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,633 copying build/lib.linux-armv7l-3.9/bx/intervals/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,639 copying build/lib.linux-armv7l-3.9/bx/intervals/cluster_tests.py -> build/bdist.linux-armv7l/wheel/bx/intervals 2021-07-15T16:39:58,640 copying build/lib.linux-armv7l-3.9/bx/seqmapping.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,642 copying build/lib.linux-armv7l-3.9/bx/binned_array.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,644 copying build/lib.linux-armv7l-3.9/bx/bitset_builders.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,647 creating build/bdist.linux-armv7l/wheel/bx/tabular 2021-07-15T16:39:58,648 copying build/lib.linux-armv7l-3.9/bx/tabular/__init__.py -> build/bdist.linux-armv7l/wheel/bx/tabular 2021-07-15T16:39:58,650 copying build/lib.linux-armv7l-3.9/bx/tabular/io.py -> build/bdist.linux-armv7l/wheel/bx/tabular 2021-07-15T16:39:58,652 copying build/lib.linux-armv7l-3.9/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,668 creating build/bdist.linux-armv7l/wheel/bx/motif 2021-07-15T16:39:58,669 copying build/lib.linux-armv7l-3.9/bx/motif/__init__.py -> build/bdist.linux-armv7l/wheel/bx/motif 2021-07-15T16:39:58,671 creating build/bdist.linux-armv7l/wheel/bx/motif/logo 2021-07-15T16:39:58,672 copying build/lib.linux-armv7l-3.9/bx/motif/logo/__init__.py -> build/bdist.linux-armv7l/wheel/bx/motif/logo 2021-07-15T16:39:58,673 copying build/lib.linux-armv7l-3.9/bx/motif/logo/template.ps -> build/bdist.linux-armv7l/wheel/bx/motif/logo 2021-07-15T16:39:58,676 creating build/bdist.linux-armv7l/wheel/bx/motif/io 2021-07-15T16:39:58,677 copying build/lib.linux-armv7l-3.9/bx/motif/io/__init__.py -> build/bdist.linux-armv7l/wheel/bx/motif/io 2021-07-15T16:39:58,678 copying build/lib.linux-armv7l-3.9/bx/motif/io/transfac.py -> build/bdist.linux-armv7l/wheel/bx/motif/io 2021-07-15T16:39:58,680 copying build/lib.linux-armv7l-3.9/bx/motif/io/transfac_tests.py -> build/bdist.linux-armv7l/wheel/bx/motif/io 2021-07-15T16:39:58,682 copying build/lib.linux-armv7l-3.9/bx/motif/pwm.py -> build/bdist.linux-armv7l/wheel/bx/motif 2021-07-15T16:39:58,684 copying build/lib.linux-armv7l-3.9/bx/motif/_pwm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bx/motif 2021-07-15T16:39:58,688 copying build/lib.linux-armv7l-3.9/bx/motif/pwm_tests.py -> build/bdist.linux-armv7l/wheel/bx/motif 2021-07-15T16:39:58,690 copying build/lib.linux-armv7l-3.9/bx/seqmapping_tests.py -> build/bdist.linux-armv7l/wheel/bx 2021-07-15T16:39:58,692 copying build/lib.linux-armv7l-3.9/psyco_full.py -> build/bdist.linux-armv7l/wheel 2021-07-15T16:39:58,695 creating build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,695 copying build/lib.linux-armv7l-3.9/bx_extras/__init__.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,697 copying build/lib.linux-armv7l-3.9/bx_extras/fpconst.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,699 copying build/lib.linux-armv7l-3.9/bx_extras/lrucache.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,702 copying build/lib.linux-armv7l-3.9/bx_extras/fpconst_tests.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,703 copying build/lib.linux-armv7l-3.9/bx_extras/pstat.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,707 copying build/lib.linux-armv7l-3.9/bx_extras/pyparsing.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,714 copying build/lib.linux-armv7l-3.9/bx_extras/stats.py -> build/bdist.linux-armv7l/wheel/bx_extras 2021-07-15T16:39:58,721 running install_egg_info 2021-07-15T16:39:58,747 running egg_info 2021-07-15T16:39:58,748 writing lib/bx_python.egg-info/PKG-INFO 2021-07-15T16:39:58,750 writing dependency_links to lib/bx_python.egg-info/dependency_links.txt 2021-07-15T16:39:58,752 writing requirements to lib/bx_python.egg-info/requires.txt 2021-07-15T16:39:58,753 writing top-level names to lib/bx_python.egg-info/top_level.txt 2021-07-15T16:39:58,836 reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' 2021-07-15T16:39:58,852 reading manifest template 'MANIFEST.in' 2021-07-15T16:39:58,853 warning: no files found matching 'distribute_setup.py' 2021-07-15T16:39:59,113 adding license file 'LICENSE' 2021-07-15T16:39:59,131 writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' 2021-07-15T16:39:59,133 Copying lib/bx_python.egg-info to build/bdist.linux-armv7l/wheel/bx_python-0.8.8-py3.9.egg-info 2021-07-15T16:39:59,146 running install_scripts 2021-07-15T16:39:59,213 creating build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data 2021-07-15T16:39:59,214 creating build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,215 copying build/scripts-3.9/maf_extract_ranges_indexed.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,218 copying build/scripts-3.9/maf_translate_chars.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,220 copying build/scripts-3.9/wiggle_to_chr_binned_array.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,222 copying build/scripts-3.9/maf_build_index.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,224 copying build/scripts-3.9/interval_count_intersections.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,226 copying build/scripts-3.9/maf_filter.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,228 copying build/scripts-3.9/one_field_per_line.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,230 copying build/scripts-3.9/line_select.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,232 copying build/scripts-3.9/nib_intervals_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,234 copying build/scripts-3.9/pretty_table.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,236 copying build/scripts-3.9/maf_covered_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,238 copying build/scripts-3.9/bed_build_windows.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,240 copying build/scripts-3.9/mask_quality.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,242 copying build/scripts-3.9/maf_interval_alignibility.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,245 copying build/scripts-3.9/bed_coverage_by_interval.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,247 copying build/scripts-3.9/bed_intersect_basewise.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,249 copying build/scripts-3.9/mMK_bitset.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,251 copying build/scripts-3.9/maf_mean_length_ungapped_piece.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,253 copying build/scripts-3.9/maf_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,256 copying build/scripts-3.9/bed_diff_basewise_summary.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,258 copying build/scripts-3.9/maf_extract_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,260 copying build/scripts-3.9/find_in_sorted_file.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,262 copying build/scripts-3.9/maf_count.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,264 copying build/scripts-3.9/prefix_lines.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,266 copying build/scripts-3.9/interval_join.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,268 copying build/scripts-3.9/bnMapper.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,271 copying build/scripts-3.9/wiggle_to_array_tree.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,273 copying build/scripts-3.9/bed_extend_to.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,276 copying build/scripts-3.9/maf_region_coverage_by_src.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,278 copying build/scripts-3.9/lav_to_axt.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,280 copying build/scripts-3.9/lzop_build_offset_table.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,282 copying build/scripts-3.9/maf_extract_chrom_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,284 copying build/scripts-3.9/maf_gc_content.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,286 copying build/scripts-3.9/maf_filter_max_wc.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,289 copying build/scripts-3.9/qv_to_bqv.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,291 copying build/scripts-3.9/maf_percent_columns_matching.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,293 copying build/scripts-3.9/maf_chop.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,295 copying build/scripts-3.9/lav_to_maf.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,297 copying build/scripts-3.9/maf_div_sites.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,299 copying build/scripts-3.9/div_snp_table_chr.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,302 copying build/scripts-3.9/maf_truncate.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,304 copying build/scripts-3.9/table_add_column.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,306 copying build/scripts-3.9/bed_merge_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,308 copying build/scripts-3.9/maf_tile.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,311 copying build/scripts-3.9/maf_randomize.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,313 copying build/scripts-3.9/gene_fourfold_sites.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,316 copying build/scripts-3.9/axt_to_maf.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,319 copying build/scripts-3.9/maf_split_by_src.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,321 copying build/scripts-3.9/maf_select.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,323 copying build/scripts-3.9/maf_to_int_seqs.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,325 copying build/scripts-3.9/align_print_template.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,327 copying build/scripts-3.9/get_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,330 copying build/scripts-3.9/bed_coverage.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,332 copying build/scripts-3.9/maf_col_counts_all.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,334 copying build/scripts-3.9/nib_length.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,336 copying build/scripts-3.9/bed_intersect.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,339 copying build/scripts-3.9/bed_complement.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,341 copying build/scripts-3.9/bed_bigwig_profile.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,343 copying build/scripts-3.9/maf_gap_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,345 copying build/scripts-3.9/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,347 copying build/scripts-3.9/maf_species_in_all_files.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,349 copying build/scripts-3.9/maf_drop_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,351 copying build/scripts-3.9/maf_print_chroms.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,354 copying build/scripts-3.9/tfloc_summary.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,356 copying build/scripts-3.9/nib_chrom_intervals_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,358 copying build/scripts-3.9/maf_col_counts.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,360 copying build/scripts-3.9/axt_extract_ranges.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,362 copying build/scripts-3.9/wiggle_to_binned_array.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,364 copying build/scripts-3.9/int_seqs_to_char_strings.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,366 copying build/scripts-3.9/maf_tile_2.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,369 copying build/scripts-3.9/maf_to_axt.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,371 copying build/scripts-3.9/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,374 copying build/scripts-3.9/maf_covered_regions.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,376 copying build/scripts-3.9/maf_print_scores.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,378 copying build/scripts-3.9/random_lines.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,380 copying build/scripts-3.9/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,382 copying build/scripts-3.9/bed_rand_intersect.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,385 copying build/scripts-3.9/maf_shuffle_columns.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,387 copying build/scripts-3.9/out_to_chain.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,389 copying build/scripts-3.9/table_filter.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,391 copying build/scripts-3.9/bed_count_by_interval.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,393 copying build/scripts-3.9/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,395 copying build/scripts-3.9/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,397 copying build/scripts-3.9/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,400 copying build/scripts-3.9/bed_count_overlapping.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,402 copying build/scripts-3.9/maf_mask_cpg.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,404 copying build/scripts-3.9/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,406 copying build/scripts-3.9/maf_percent_identity.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,409 copying build/scripts-3.9/maf_tile_2bit.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,411 copying build/scripts-3.9/maf_mapping_word_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,414 copying build/scripts-3.9/maf_chunk.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,416 copying build/scripts-3.9/maf_to_fasta.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,418 copying build/scripts-3.9/maf_word_frequency.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,420 copying build/scripts-3.9/bed_subtract_basewise.py -> build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts 2021-07-15T16:39:59,422 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_extract_ranges_indexed.py to 755 2021-07-15T16:39:59,423 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_translate_chars.py to 755 2021-07-15T16:39:59,423 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/wiggle_to_chr_binned_array.py to 755 2021-07-15T16:39:59,424 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_build_index.py to 755 2021-07-15T16:39:59,425 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/interval_count_intersections.py to 755 2021-07-15T16:39:59,425 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_filter.py to 755 2021-07-15T16:39:59,426 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/one_field_per_line.py to 755 2021-07-15T16:39:59,426 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/line_select.py to 755 2021-07-15T16:39:59,427 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/nib_intervals_to_fasta.py to 755 2021-07-15T16:39:59,427 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/pretty_table.py to 755 2021-07-15T16:39:59,428 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_covered_ranges.py to 755 2021-07-15T16:39:59,428 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_build_windows.py to 755 2021-07-15T16:39:59,429 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/mask_quality.py to 755 2021-07-15T16:39:59,430 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_interval_alignibility.py to 755 2021-07-15T16:39:59,430 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_coverage_by_interval.py to 755 2021-07-15T16:39:59,431 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_intersect_basewise.py to 755 2021-07-15T16:39:59,431 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/mMK_bitset.py to 755 2021-07-15T16:39:59,432 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_mean_length_ungapped_piece.py to 755 2021-07-15T16:39:59,432 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_to_concat_fasta.py to 755 2021-07-15T16:39:59,433 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_diff_basewise_summary.py to 755 2021-07-15T16:39:59,434 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_extract_ranges.py to 755 2021-07-15T16:39:59,434 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/find_in_sorted_file.py to 755 2021-07-15T16:39:59,435 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_count.py to 755 2021-07-15T16:39:59,435 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/prefix_lines.py to 755 2021-07-15T16:39:59,436 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/interval_join.py to 755 2021-07-15T16:39:59,436 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bnMapper.py to 755 2021-07-15T16:39:59,437 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/wiggle_to_array_tree.py to 755 2021-07-15T16:39:59,437 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_extend_to.py to 755 2021-07-15T16:39:59,438 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_region_coverage_by_src.py to 755 2021-07-15T16:39:59,438 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/lav_to_axt.py to 755 2021-07-15T16:39:59,439 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/lzop_build_offset_table.py to 755 2021-07-15T16:39:59,439 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_extract_chrom_ranges.py to 755 2021-07-15T16:39:59,440 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_gc_content.py to 755 2021-07-15T16:39:59,440 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_filter_max_wc.py to 755 2021-07-15T16:39:59,441 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/qv_to_bqv.py to 755 2021-07-15T16:39:59,441 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_percent_columns_matching.py to 755 2021-07-15T16:39:59,442 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_chop.py to 755 2021-07-15T16:39:59,442 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/lav_to_maf.py to 755 2021-07-15T16:39:59,443 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_div_sites.py to 755 2021-07-15T16:39:59,444 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/div_snp_table_chr.py to 755 2021-07-15T16:39:59,444 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_truncate.py to 755 2021-07-15T16:39:59,445 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/table_add_column.py to 755 2021-07-15T16:39:59,445 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_merge_overlapping.py to 755 2021-07-15T16:39:59,446 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_tile.py to 755 2021-07-15T16:39:59,446 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_randomize.py to 755 2021-07-15T16:39:59,447 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/gene_fourfold_sites.py to 755 2021-07-15T16:39:59,447 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/axt_to_maf.py to 755 2021-07-15T16:39:59,448 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_split_by_src.py to 755 2021-07-15T16:39:59,448 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_select.py to 755 2021-07-15T16:39:59,449 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_to_int_seqs.py to 755 2021-07-15T16:39:59,449 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/align_print_template.py to 755 2021-07-15T16:39:59,450 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/get_scores_in_intervals.py to 755 2021-07-15T16:39:59,451 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_coverage.py to 755 2021-07-15T16:39:59,451 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_col_counts_all.py to 755 2021-07-15T16:39:59,452 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/nib_length.py to 755 2021-07-15T16:39:59,452 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_intersect.py to 755 2021-07-15T16:39:59,453 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_complement.py to 755 2021-07-15T16:39:59,453 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_bigwig_profile.py to 755 2021-07-15T16:39:59,454 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_gap_frequency.py to 755 2021-07-15T16:39:59,454 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/ucsc_gene_table_to_intervals.py to 755 2021-07-15T16:39:59,455 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_species_in_all_files.py to 755 2021-07-15T16:39:59,455 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_drop_overlapping.py to 755 2021-07-15T16:39:59,456 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_print_chroms.py to 755 2021-07-15T16:39:59,456 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/tfloc_summary.py to 755 2021-07-15T16:39:59,457 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/nib_chrom_intervals_to_fasta.py to 755 2021-07-15T16:39:59,457 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_col_counts.py to 755 2021-07-15T16:39:59,458 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/axt_extract_ranges.py to 755 2021-07-15T16:39:59,458 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/wiggle_to_binned_array.py to 755 2021-07-15T16:39:59,459 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/int_seqs_to_char_strings.py to 755 2021-07-15T16:39:59,459 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_tile_2.py to 755 2021-07-15T16:39:59,460 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_to_axt.py to 755 2021-07-15T16:39:59,460 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_limit_to_species.py to 755 2021-07-15T16:39:59,461 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_covered_regions.py to 755 2021-07-15T16:39:59,461 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_print_scores.py to 755 2021-07-15T16:39:59,462 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/random_lines.py to 755 2021-07-15T16:39:59,462 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/wiggle_to_simple.py to 755 2021-07-15T16:39:59,463 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_rand_intersect.py to 755 2021-07-15T16:39:59,463 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_shuffle_columns.py to 755 2021-07-15T16:39:59,464 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/out_to_chain.py to 755 2021-07-15T16:39:59,464 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/table_filter.py to 755 2021-07-15T16:39:59,465 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_count_by_interval.py to 755 2021-07-15T16:39:59,465 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_thread_for_species.py to 755 2021-07-15T16:39:59,466 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/axt_to_fasta.py to 755 2021-07-15T16:39:59,466 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/aggregate_scores_in_intervals.py to 755 2021-07-15T16:39:59,467 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_count_overlapping.py to 755 2021-07-15T16:39:59,467 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_mask_cpg.py to 755 2021-07-15T16:39:59,467 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/axt_to_lav.py to 755 2021-07-15T16:39:59,468 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_percent_identity.py to 755 2021-07-15T16:39:59,468 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_tile_2bit.py to 755 2021-07-15T16:39:59,469 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_mapping_word_frequency.py to 755 2021-07-15T16:39:59,469 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_chunk.py to 755 2021-07-15T16:39:59,470 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_to_fasta.py to 755 2021-07-15T16:39:59,470 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/maf_word_frequency.py to 755 2021-07-15T16:39:59,471 changing mode of build/bdist.linux-armv7l/wheel/bx_python-0.8.8.data/scripts/bed_subtract_basewise.py to 755 2021-07-15T16:39:59,490 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-15T16:39:59,497 creating build/bdist.linux-armv7l/wheel/bx_python-0.8.8.dist-info/WHEEL 2021-07-15T16:39:59,500 creating '/tmp/pip-wheel-az3ncafo/bx_python-0.8.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-15T16:39:59,502 adding 'psyco_full.py' 2021-07-15T16:39:59,505 adding 'bx/__init__.py' 2021-07-15T16:39:59,588 adding 'bx/_seqmapping.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:39:59,593 adding 'bx/binned_array.py' 2021-07-15T16:39:59,595 adding 'bx/binned_array_tests.py' 2021-07-15T16:39:59,683 adding 'bx/bitset.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:39:59,688 adding 'bx/bitset_builders.py' 2021-07-15T16:39:59,689 adding 'bx/bitset_tests.py' 2021-07-15T16:39:59,691 adding 'bx/bitset_utils.py' 2021-07-15T16:39:59,693 adding 'bx/filter.py' 2021-07-15T16:39:59,694 adding 'bx/gene_reader.py' 2021-07-15T16:39:59,697 adding 'bx/interval_index_file.py' 2021-07-15T16:39:59,699 adding 'bx/interval_index_file_tests.py' 2021-07-15T16:39:59,701 adding 'bx/seqmapping.py' 2021-07-15T16:39:59,702 adding 'bx/seqmapping_tests.py' 2021-07-15T16:39:59,704 adding 'bx/wiggle.py' 2021-07-15T16:39:59,705 adding 'bx/wiggle_tests.py' 2021-07-15T16:39:59,708 adding 'bx/align/__init__.py' 2021-07-15T16:39:59,722 adding 'bx/align/_core.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:39:59,874 adding 'bx/align/_epo.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:39:59,882 adding 'bx/align/axt.py' 2021-07-15T16:39:59,885 adding 'bx/align/core.py' 2021-07-15T16:39:59,887 adding 'bx/align/epo.py' 2021-07-15T16:39:59,889 adding 'bx/align/epo_tests.py' 2021-07-15T16:39:59,892 adding 'bx/align/lav.py' 2021-07-15T16:39:59,894 adding 'bx/align/lav_tests.py' 2021-07-15T16:39:59,896 adding 'bx/align/maf.py' 2021-07-15T16:39:59,898 adding 'bx/align/maf_tests.py' 2021-07-15T16:39:59,901 adding 'bx/align/score.py' 2021-07-15T16:39:59,902 adding 'bx/align/score_tests.py' 2021-07-15T16:39:59,904 adding 'bx/align/sitemask/__init__.py' 2021-07-15T16:39:59,955 adding 'bx/align/sitemask/_cpg.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:39:59,958 adding 'bx/align/sitemask/core.py' 2021-07-15T16:39:59,960 adding 'bx/align/sitemask/cpg.py' 2021-07-15T16:39:59,962 adding 'bx/align/sitemask/quality.py' 2021-07-15T16:39:59,963 adding 'bx/align/sitemask/sitemask_tests.py' 2021-07-15T16:39:59,965 adding 'bx/align/tools/__init__.py' 2021-07-15T16:39:59,967 adding 'bx/align/tools/chop.py' 2021-07-15T16:39:59,968 adding 'bx/align/tools/fuse.py' 2021-07-15T16:39:59,970 adding 'bx/align/tools/thread.py' 2021-07-15T16:39:59,972 adding 'bx/align/tools/tile.py' 2021-07-15T16:39:59,974 adding 'bx/arrays/__init__.py' 2021-07-15T16:40:00,290 adding 'bx/arrays/array_tree.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:00,306 adding 'bx/arrays/array_tree_tests.py' 2021-07-15T16:40:00,353 adding 'bx/arrays/bed.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:00,433 adding 'bx/arrays/wiggle.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:00,438 adding 'bx/bbi/__init__.py' 2021-07-15T16:40:00,697 adding 'bx/bbi/bbi_file.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:00,846 adding 'bx/bbi/bigbed_file.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,045 adding 'bx/bbi/bigwig_file.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,055 adding 'bx/bbi/bigwig_tests.py' 2021-07-15T16:40:01,137 adding 'bx/bbi/bpt_file.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,266 adding 'bx/bbi/cirtree_file.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,273 adding 'bx/cookbook/__init__.py' 2021-07-15T16:40:01,284 adding 'bx/cookbook/argparse.py' 2021-07-15T16:40:01,287 adding 'bx/cookbook/attribute.py' 2021-07-15T16:40:01,289 adding 'bx/cookbook/doc_optparse.py' 2021-07-15T16:40:01,290 adding 'bx/cookbook/progress_bar.py' 2021-07-15T16:40:01,292 adding 'bx/intervals/__init__.py' 2021-07-15T16:40:01,323 adding 'bx/intervals/cluster.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,326 adding 'bx/intervals/cluster_tests.py' 2021-07-15T16:40:01,477 adding 'bx/intervals/intersection.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,484 adding 'bx/intervals/intersection_tests.py' 2021-07-15T16:40:01,485 adding 'bx/intervals/io.py' 2021-07-15T16:40:01,488 adding 'bx/intervals/random_intervals.py' 2021-07-15T16:40:01,489 adding 'bx/intervals/operations/__init__.py' 2021-07-15T16:40:01,491 adding 'bx/intervals/operations/base_coverage.py' 2021-07-15T16:40:01,492 adding 'bx/intervals/operations/complement.py' 2021-07-15T16:40:01,493 adding 'bx/intervals/operations/concat.py' 2021-07-15T16:40:01,494 adding 'bx/intervals/operations/coverage.py' 2021-07-15T16:40:01,497 adding 'bx/intervals/operations/find_clusters.py' 2021-07-15T16:40:01,498 adding 'bx/intervals/operations/intersect.py' 2021-07-15T16:40:01,499 adding 'bx/intervals/operations/join.py' 2021-07-15T16:40:01,501 adding 'bx/intervals/operations/merge.py' 2021-07-15T16:40:01,502 adding 'bx/intervals/operations/quicksect.py' 2021-07-15T16:40:01,504 adding 'bx/intervals/operations/subtract.py' 2021-07-15T16:40:01,505 adding 'bx/intseq/__init__.py' 2021-07-15T16:40:01,536 adding 'bx/intseq/ngramcount.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,540 adding 'bx/misc/__init__.py' 2021-07-15T16:40:01,580 adding 'bx/misc/_seekbzip2.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,621 adding 'bx/misc/bgzf.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,624 adding 'bx/misc/bgzf_tests.py' 2021-07-15T16:40:01,625 adding 'bx/misc/binary_file.py' 2021-07-15T16:40:01,627 adding 'bx/misc/cdb.py' 2021-07-15T16:40:01,628 adding 'bx/misc/cdb_tests.py' 2021-07-15T16:40:01,629 adding 'bx/misc/filecache.py' 2021-07-15T16:40:01,630 adding 'bx/misc/filecache_tests.py' 2021-07-15T16:40:01,632 adding 'bx/misc/readlengths.py' 2021-07-15T16:40:01,633 adding 'bx/misc/seekbzip2.py' 2021-07-15T16:40:01,634 adding 'bx/misc/seekbzip2_tests.py' 2021-07-15T16:40:01,636 adding 'bx/misc/seeklzop.py' 2021-07-15T16:40:01,637 adding 'bx/misc/seeklzop_tests.py' 2021-07-15T16:40:01,639 adding 'bx/motif/__init__.py' 2021-07-15T16:40:01,660 adding 'bx/motif/_pwm.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,662 adding 'bx/motif/pwm.py' 2021-07-15T16:40:01,664 adding 'bx/motif/pwm_tests.py' 2021-07-15T16:40:01,665 adding 'bx/motif/io/__init__.py' 2021-07-15T16:40:01,667 adding 'bx/motif/io/transfac.py' 2021-07-15T16:40:01,668 adding 'bx/motif/io/transfac_tests.py' 2021-07-15T16:40:01,670 adding 'bx/motif/logo/__init__.py' 2021-07-15T16:40:01,671 adding 'bx/motif/logo/template.ps' 2021-07-15T16:40:01,673 adding 'bx/phylo/__init__.py' 2021-07-15T16:40:01,675 adding 'bx/phylo/newick.py' 2021-07-15T16:40:01,676 adding 'bx/phylo/newick_tests.py' 2021-07-15T16:40:01,677 adding 'bx/phylo/phast.py' 2021-07-15T16:40:01,678 adding 'bx/phylo/phast_tests.py' 2021-07-15T16:40:01,680 adding 'bx/pwm/__init__.py' 2021-07-15T16:40:01,695 adding 'bx/pwm/_position_weight_matrix.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,697 adding 'bx/pwm/bed_score_aligned_pwm.py' 2021-07-15T16:40:01,699 adding 'bx/pwm/bed_score_aligned_string.py' 2021-07-15T16:40:01,700 adding 'bx/pwm/maf_select_motifs.py' 2021-07-15T16:40:01,704 adding 'bx/pwm/position_weight_matrix.py' 2021-07-15T16:40:01,706 adding 'bx/pwm/pwm_score_maf.py' 2021-07-15T16:40:01,707 adding 'bx/pwm/pwm_score_motifs.py' 2021-07-15T16:40:01,708 adding 'bx/pwm/pwm_score_positions.py' 2021-07-15T16:40:01,709 adding 'bx/pwm/pwm_tests.py' 2021-07-15T16:40:01,711 adding 'bx/seq/__init__.py' 2021-07-15T16:40:01,730 adding 'bx/seq/_nib.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,772 adding 'bx/seq/_twobit.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T16:40:01,775 adding 'bx/seq/core.py' 2021-07-15T16:40:01,776 adding 'bx/seq/fasta.py' 2021-07-15T16:40:01,777 adding 'bx/seq/fasta_tests.py' 2021-07-15T16:40:01,779 adding 'bx/seq/nib.py' 2021-07-15T16:40:01,780 adding 'bx/seq/nib_tests.py' 2021-07-15T16:40:01,782 adding 'bx/seq/qdna.py' 2021-07-15T16:40:01,783 adding 'bx/seq/qdna_tests.py' 2021-07-15T16:40:01,785 adding 'bx/seq/seq.py' 2021-07-15T16:40:01,786 adding 'bx/seq/seq_tests.py' 2021-07-15T16:40:01,790 adding 'bx/seq/twobit.py' 2021-07-15T16:40:01,791 adding 'bx/seq/twobit_tests.py' 2021-07-15T16:40:01,793 adding 'bx/tabular/__init__.py' 2021-07-15T16:40:01,794 adding 'bx/tabular/io.py' 2021-07-15T16:40:01,796 adding 'bx_extras/__init__.py' 2021-07-15T16:40:01,797 adding 'bx_extras/fpconst.py' 2021-07-15T16:40:01,798 adding 'bx_extras/fpconst_tests.py' 2021-07-15T16:40:01,800 adding 'bx_extras/lrucache.py' 2021-07-15T16:40:01,805 adding 'bx_extras/pstat.py' 2021-07-15T16:40:01,825 adding 'bx_extras/pyparsing.py' 2021-07-15T16:40:01,844 adding 'bx_extras/stats.py' 2021-07-15T16:40:01,850 adding 'bx_python-0.8.8.data/scripts/aggregate_scores_in_intervals.py' 2021-07-15T16:40:01,851 adding 'bx_python-0.8.8.data/scripts/align_print_template.py' 2021-07-15T16:40:01,852 adding 'bx_python-0.8.8.data/scripts/axt_extract_ranges.py' 2021-07-15T16:40:01,854 adding 'bx_python-0.8.8.data/scripts/axt_to_fasta.py' 2021-07-15T16:40:01,855 adding 'bx_python-0.8.8.data/scripts/axt_to_lav.py' 2021-07-15T16:40:01,856 adding 'bx_python-0.8.8.data/scripts/axt_to_maf.py' 2021-07-15T16:40:01,857 adding 'bx_python-0.8.8.data/scripts/bed_bigwig_profile.py' 2021-07-15T16:40:01,859 adding 'bx_python-0.8.8.data/scripts/bed_build_windows.py' 2021-07-15T16:40:01,860 adding 'bx_python-0.8.8.data/scripts/bed_complement.py' 2021-07-15T16:40:01,861 adding 'bx_python-0.8.8.data/scripts/bed_count_by_interval.py' 2021-07-15T16:40:01,862 adding 'bx_python-0.8.8.data/scripts/bed_count_overlapping.py' 2021-07-15T16:40:01,863 adding 'bx_python-0.8.8.data/scripts/bed_coverage.py' 2021-07-15T16:40:01,865 adding 'bx_python-0.8.8.data/scripts/bed_coverage_by_interval.py' 2021-07-15T16:40:01,866 adding 'bx_python-0.8.8.data/scripts/bed_diff_basewise_summary.py' 2021-07-15T16:40:01,867 adding 'bx_python-0.8.8.data/scripts/bed_extend_to.py' 2021-07-15T16:40:01,868 adding 'bx_python-0.8.8.data/scripts/bed_intersect.py' 2021-07-15T16:40:01,870 adding 'bx_python-0.8.8.data/scripts/bed_intersect_basewise.py' 2021-07-15T16:40:01,871 adding 'bx_python-0.8.8.data/scripts/bed_merge_overlapping.py' 2021-07-15T16:40:01,873 adding 'bx_python-0.8.8.data/scripts/bed_rand_intersect.py' 2021-07-15T16:40:01,874 adding 'bx_python-0.8.8.data/scripts/bed_subtract_basewise.py' 2021-07-15T16:40:01,877 adding 'bx_python-0.8.8.data/scripts/bnMapper.py' 2021-07-15T16:40:01,879 adding 'bx_python-0.8.8.data/scripts/div_snp_table_chr.py' 2021-07-15T16:40:01,880 adding 'bx_python-0.8.8.data/scripts/find_in_sorted_file.py' 2021-07-15T16:40:01,882 adding 'bx_python-0.8.8.data/scripts/gene_fourfold_sites.py' 2021-07-15T16:40:01,883 adding 'bx_python-0.8.8.data/scripts/get_scores_in_intervals.py' 2021-07-15T16:40:01,884 adding 'bx_python-0.8.8.data/scripts/int_seqs_to_char_strings.py' 2021-07-15T16:40:01,886 adding 'bx_python-0.8.8.data/scripts/interval_count_intersections.py' 2021-07-15T16:40:01,887 adding 'bx_python-0.8.8.data/scripts/interval_join.py' 2021-07-15T16:40:01,888 adding 'bx_python-0.8.8.data/scripts/lav_to_axt.py' 2021-07-15T16:40:01,889 adding 'bx_python-0.8.8.data/scripts/lav_to_maf.py' 2021-07-15T16:40:01,890 adding 'bx_python-0.8.8.data/scripts/line_select.py' 2021-07-15T16:40:01,892 adding 'bx_python-0.8.8.data/scripts/lzop_build_offset_table.py' 2021-07-15T16:40:01,893 adding 'bx_python-0.8.8.data/scripts/mMK_bitset.py' 2021-07-15T16:40:01,895 adding 'bx_python-0.8.8.data/scripts/maf_build_index.py' 2021-07-15T16:40:01,896 adding 'bx_python-0.8.8.data/scripts/maf_chop.py' 2021-07-15T16:40:01,897 adding 'bx_python-0.8.8.data/scripts/maf_chunk.py' 2021-07-15T16:40:01,899 adding 'bx_python-0.8.8.data/scripts/maf_col_counts.py' 2021-07-15T16:40:01,900 adding 'bx_python-0.8.8.data/scripts/maf_col_counts_all.py' 2021-07-15T16:40:01,901 adding 'bx_python-0.8.8.data/scripts/maf_count.py' 2021-07-15T16:40:01,902 adding 'bx_python-0.8.8.data/scripts/maf_covered_ranges.py' 2021-07-15T16:40:01,904 adding 'bx_python-0.8.8.data/scripts/maf_covered_regions.py' 2021-07-15T16:40:01,905 adding 'bx_python-0.8.8.data/scripts/maf_div_sites.py' 2021-07-15T16:40:01,906 adding 'bx_python-0.8.8.data/scripts/maf_drop_overlapping.py' 2021-07-15T16:40:01,908 adding 'bx_python-0.8.8.data/scripts/maf_extract_chrom_ranges.py' 2021-07-15T16:40:01,909 adding 'bx_python-0.8.8.data/scripts/maf_extract_ranges.py' 2021-07-15T16:40:01,910 adding 'bx_python-0.8.8.data/scripts/maf_extract_ranges_indexed.py' 2021-07-15T16:40:01,912 adding 'bx_python-0.8.8.data/scripts/maf_filter.py' 2021-07-15T16:40:01,913 adding 'bx_python-0.8.8.data/scripts/maf_filter_max_wc.py' 2021-07-15T16:40:01,914 adding 'bx_python-0.8.8.data/scripts/maf_gap_frequency.py' 2021-07-15T16:40:01,915 adding 'bx_python-0.8.8.data/scripts/maf_gc_content.py' 2021-07-15T16:40:01,917 adding 'bx_python-0.8.8.data/scripts/maf_interval_alignibility.py' 2021-07-15T16:40:01,918 adding 'bx_python-0.8.8.data/scripts/maf_limit_to_species.py' 2021-07-15T16:40:01,919 adding 'bx_python-0.8.8.data/scripts/maf_mapping_word_frequency.py' 2021-07-15T16:40:01,921 adding 'bx_python-0.8.8.data/scripts/maf_mask_cpg.py' 2021-07-15T16:40:01,922 adding 'bx_python-0.8.8.data/scripts/maf_mean_length_ungapped_piece.py' 2021-07-15T16:40:01,923 adding 'bx_python-0.8.8.data/scripts/maf_percent_columns_matching.py' 2021-07-15T16:40:01,924 adding 'bx_python-0.8.8.data/scripts/maf_percent_identity.py' 2021-07-15T16:40:01,926 adding 'bx_python-0.8.8.data/scripts/maf_print_chroms.py' 2021-07-15T16:40:01,927 adding 'bx_python-0.8.8.data/scripts/maf_print_scores.py' 2021-07-15T16:40:01,928 adding 'bx_python-0.8.8.data/scripts/maf_randomize.py' 2021-07-15T16:40:01,930 adding 'bx_python-0.8.8.data/scripts/maf_region_coverage_by_src.py' 2021-07-15T16:40:01,931 adding 'bx_python-0.8.8.data/scripts/maf_select.py' 2021-07-15T16:40:01,932 adding 'bx_python-0.8.8.data/scripts/maf_shuffle_columns.py' 2021-07-15T16:40:01,933 adding 'bx_python-0.8.8.data/scripts/maf_species_in_all_files.py' 2021-07-15T16:40:01,935 adding 'bx_python-0.8.8.data/scripts/maf_split_by_src.py' 2021-07-15T16:40:01,936 adding 'bx_python-0.8.8.data/scripts/maf_thread_for_species.py' 2021-07-15T16:40:01,938 adding 'bx_python-0.8.8.data/scripts/maf_tile.py' 2021-07-15T16:40:01,940 adding 'bx_python-0.8.8.data/scripts/maf_tile_2.py' 2021-07-15T16:40:01,943 adding 'bx_python-0.8.8.data/scripts/maf_tile_2bit.py' 2021-07-15T16:40:01,944 adding 'bx_python-0.8.8.data/scripts/maf_to_axt.py' 2021-07-15T16:40:01,946 adding 'bx_python-0.8.8.data/scripts/maf_to_concat_fasta.py' 2021-07-15T16:40:01,947 adding 'bx_python-0.8.8.data/scripts/maf_to_fasta.py' 2021-07-15T16:40:01,949 adding 'bx_python-0.8.8.data/scripts/maf_to_int_seqs.py' 2021-07-15T16:40:01,950 adding 'bx_python-0.8.8.data/scripts/maf_translate_chars.py' 2021-07-15T16:40:01,951 adding 'bx_python-0.8.8.data/scripts/maf_truncate.py' 2021-07-15T16:40:01,953 adding 'bx_python-0.8.8.data/scripts/maf_word_frequency.py' 2021-07-15T16:40:01,954 adding 'bx_python-0.8.8.data/scripts/mask_quality.py' 2021-07-15T16:40:01,956 adding 'bx_python-0.8.8.data/scripts/nib_chrom_intervals_to_fasta.py' 2021-07-15T16:40:01,958 adding 'bx_python-0.8.8.data/scripts/nib_intervals_to_fasta.py' 2021-07-15T16:40:01,960 adding 'bx_python-0.8.8.data/scripts/nib_length.py' 2021-07-15T16:40:01,961 adding 'bx_python-0.8.8.data/scripts/one_field_per_line.py' 2021-07-15T16:40:01,963 adding 'bx_python-0.8.8.data/scripts/out_to_chain.py' 2021-07-15T16:40:01,964 adding 'bx_python-0.8.8.data/scripts/prefix_lines.py' 2021-07-15T16:40:01,966 adding 'bx_python-0.8.8.data/scripts/pretty_table.py' 2021-07-15T16:40:01,967 adding 'bx_python-0.8.8.data/scripts/qv_to_bqv.py' 2021-07-15T16:40:01,968 adding 'bx_python-0.8.8.data/scripts/random_lines.py' 2021-07-15T16:40:01,970 adding 'bx_python-0.8.8.data/scripts/table_add_column.py' 2021-07-15T16:40:01,971 adding 'bx_python-0.8.8.data/scripts/table_filter.py' 2021-07-15T16:40:01,973 adding 'bx_python-0.8.8.data/scripts/tfloc_summary.py' 2021-07-15T16:40:01,974 adding 'bx_python-0.8.8.data/scripts/ucsc_gene_table_to_intervals.py' 2021-07-15T16:40:01,976 adding 'bx_python-0.8.8.data/scripts/wiggle_to_array_tree.py' 2021-07-15T16:40:01,978 adding 'bx_python-0.8.8.data/scripts/wiggle_to_binned_array.py' 2021-07-15T16:40:01,980 adding 'bx_python-0.8.8.data/scripts/wiggle_to_chr_binned_array.py' 2021-07-15T16:40:01,982 adding 'bx_python-0.8.8.data/scripts/wiggle_to_simple.py' 2021-07-15T16:40:01,986 adding 'bx_python-0.8.8.dist-info/LICENSE' 2021-07-15T16:40:01,991 adding 'bx_python-0.8.8.dist-info/METADATA' 2021-07-15T16:40:01,992 adding 'bx_python-0.8.8.dist-info/WHEEL' 2021-07-15T16:40:01,992 adding 'bx_python-0.8.8.dist-info/top_level.txt' 2021-07-15T16:40:01,994 adding 'bx_python-0.8.8.dist-info/RECORD' 2021-07-15T16:40:02,065 removing build/bdist.linux-armv7l/wheel 2021-07-15T16:40:02,334 Building wheel for bx-python (setup.py): finished with status 'done' 2021-07-15T16:40:02,387 Created wheel for bx-python: filename=bx_python-0.8.8-cp39-cp39-linux_armv7l.whl size=3947553 sha256=0eda1273e390781a3d1f0a74887fcf45c4075d082dab7c99e3a213f4ec4358b2 2021-07-15T16:40:02,387 Stored in directory: /tmp/pip-ephem-wheel-cache-rcedynfg/wheels/7d/b1/07/336f0c635a31651b5b54be021683aa542cf74855b289fff150 2021-07-15T16:40:02,406 Successfully built bx-python 2021-07-15T16:40:02,537 Removed build tracker: '/tmp/pip-req-tracker-j29_ssxy'