2021-07-15T17:42:01,815 Created temporary directory: /tmp/pip-ephem-wheel-cache-ed40tfu2 2021-07-15T17:42:01,818 Created temporary directory: /tmp/pip-req-tracker-zv07t3nx 2021-07-15T17:42:01,818 Initialized build tracking at /tmp/pip-req-tracker-zv07t3nx 2021-07-15T17:42:01,818 Created build tracker: /tmp/pip-req-tracker-zv07t3nx 2021-07-15T17:42:01,819 Entered build tracker: /tmp/pip-req-tracker-zv07t3nx 2021-07-15T17:42:01,819 Created temporary directory: /tmp/pip-wheel-nvpca5v9 2021-07-15T17:42:01,849 1 location(s) to search for versions of pygom: 2021-07-15T17:42:01,849 * https://pypi.org/simple/pygom/ 2021-07-15T17:42:01,849 Fetching project page and analyzing links: https://pypi.org/simple/pygom/ 2021-07-15T17:42:01,850 Getting page https://pypi.org/simple/pygom/ 2021-07-15T17:42:01,852 Found index url https://pypi.org/simple 2021-07-15T17:42:01,942 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b6/64/9f5f0c582270f4fa6336ab727dc8ae04f4a450307b4159cee9a89cf41706/pygom-0.1.0-py2.7.egg#sha256=a57d8bfa86d68e33737b283d7ae8e211fc7294d446acc21f7889053162977208 (from https://pypi.org/simple/pygom/) 2021-07-15T17:42:01,942 Found link https://files.pythonhosted.org/packages/be/f0/4378974b05e34251b59a7c1ee48e871ab9e61ca804d6b7b84d2b3cd30ccd/pygom-0.1.0.tar.gz#sha256=10a973ac1aeac930fc8ea71507517b48eb9df79ce33d232fd73bfe3d477bc578 (from https://pypi.org/simple/pygom/), version: 0.1.0 2021-07-15T17:42:01,943 Found link https://files.pythonhosted.org/packages/3f/06/5c848ec61811d1cf4544ad492f45c63769bdbc53a898106ae2c7f944eaaf/pygom-0.1.1.tar.gz#sha256=d5eaf3d646b3a8be94580c6761d4a4eca308bfcb2d6de1272de1ed8031e714d8 (from https://pypi.org/simple/pygom/), version: 0.1.1 2021-07-15T17:42:01,943 Found link https://files.pythonhosted.org/packages/24/97/d708814dbc6a86450d134418696b9ef1ffd217abc33c71392df7fab9fe08/pygom-0.1.4.tar.gz#sha256=8bdb39a21332cbe45c63abe5a54a6905c8757201a5f7d4e94b7bf4cacfd9d760 (from https://pypi.org/simple/pygom/), version: 0.1.4 2021-07-15T17:42:01,943 Found link https://files.pythonhosted.org/packages/fa/dc/54b34416f5d21618e781f0fce562a4d85e7291b9e50b9f14c4e9f2d98126/pygom-0.1.5.tar.gz#sha256=6e2183691d9f876d986859287b928b41e6ba384e6bb79e69acc903616e55f082 (from https://pypi.org/simple/pygom/), version: 0.1.5 2021-07-15T17:42:01,943 Found link https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db (from https://pypi.org/simple/pygom/), version: 0.1.6 2021-07-15T17:42:01,944 Found link https://files.pythonhosted.org/packages/a4/32/f5eb25fd1ee4e2fa2d4a71a9eeb152ec453a5f8610f1d2161382175c1471/pygom-0.1.7.tar.gz#sha256=34bb9d154cbb2770e135d918ebbbc8d8e22c44c54456e42c5642f0d2e98425c2 (from https://pypi.org/simple/pygom/), version: 0.1.7 2021-07-15T17:42:01,944 Skipping link: not a file: https://pypi.org/simple/pygom/ 2021-07-15T17:42:01,965 Given no hashes to check 1 links for project 'pygom': discarding no candidates 2021-07-15T17:42:01,984 Collecting pygom==0.1.6 2021-07-15T17:42:01,986 Created temporary directory: /tmp/pip-unpack-07y55pgo 2021-07-15T17:42:02,332 Downloading pygom-0.1.6.tar.gz (489 kB) 2021-07-15T17:42:02,746 Added pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db to build tracker '/tmp/pip-req-tracker-zv07t3nx' 2021-07-15T17:42:02,747 Running setup.py (path:/tmp/pip-wheel-nvpca5v9/pygom_86ceb11e8d3643b9b8bdc7a8cb0d8692/setup.py) egg_info for package pygom 2021-07-15T17:42:02,748 Created temporary directory: /tmp/pip-pip-egg-info-ukm3yct4 2021-07-15T17:42:02,748 Running command python setup.py egg_info 2021-07-15T17:42:06,887 running egg_info 2021-07-15T17:42:06,890 creating /tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info 2021-07-15T17:42:06,891 writing /tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/PKG-INFO 2021-07-15T17:42:06,893 writing dependency_links to /tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/dependency_links.txt 2021-07-15T17:42:06,895 writing requirements to /tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/requires.txt 2021-07-15T17:42:06,896 writing top-level names to /tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/top_level.txt 2021-07-15T17:42:06,897 writing manifest file '/tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/SOURCES.txt' 2021-07-15T17:42:07,106 reading manifest file '/tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/SOURCES.txt' 2021-07-15T17:42:07,109 reading manifest template 'MANIFEST.in' 2021-07-15T17:42:07,110 warning: no files found matching 'data/*.json' 2021-07-15T17:42:07,110 adding license file 'LICENSE.txt' 2021-07-15T17:42:07,115 writing manifest file '/tmp/pip-pip-egg-info-ukm3yct4/pygom.egg-info/SOURCES.txt' 2021-07-15T17:42:07,229 Source in /tmp/pip-wheel-nvpca5v9/pygom_86ceb11e8d3643b9b8bdc7a8cb0d8692 has version 0.1.6, which satisfies requirement pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db 2021-07-15T17:42:07,230 Removed pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db from build tracker '/tmp/pip-req-tracker-zv07t3nx' 2021-07-15T17:42:07,234 Created temporary directory: /tmp/pip-unpack-7gg5gy3w 2021-07-15T17:42:07,235 Building wheels for collected packages: pygom 2021-07-15T17:42:07,239 Created temporary directory: /tmp/pip-wheel-cnhl_dia 2021-07-15T17:42:07,239 Building wheel for pygom (setup.py): started 2021-07-15T17:42:07,239 Destination directory: /tmp/pip-wheel-cnhl_dia 2021-07-15T17:42:07,239 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nvpca5v9/pygom_86ceb11e8d3643b9b8bdc7a8cb0d8692/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nvpca5v9/pygom_86ceb11e8d3643b9b8bdc7a8cb0d8692/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cnhl_dia 2021-07-15T17:42:09,315 running bdist_wheel 2021-07-15T17:42:09,321 running build 2021-07-15T17:42:09,321 running build_py 2021-07-15T17:42:09,476 creating build 2021-07-15T17:42:09,477 creating build/lib.linux-armv7l-3.9 2021-07-15T17:42:09,477 creating build/lib.linux-armv7l-3.9/pygom 2021-07-15T17:42:09,478 copying pygom/__init__.py -> build/lib.linux-armv7l-3.9/pygom 2021-07-15T17:42:09,481 creating build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,482 copying pygom/model/_model_errors.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,484 copying pygom/model/base_ode_model.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,486 copying pygom/model/_ode_composition.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,489 copying pygom/model/_model_verification.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,491 copying pygom/model/transition.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,493 copying pygom/model/simulate.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,496 copying pygom/model/deterministic.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,501 copying pygom/model/epi_analysis.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,503 copying pygom/model/__init__.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,505 copying pygom/model/common_models.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,509 copying pygom/model/ode_variable.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,511 copying pygom/model/stochastic_simulation.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,515 creating build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,516 copying pygom/model/ode_utils/plot_stoc.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,518 copying pygom/model/ode_utils/checks_and_conversions.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,520 copying pygom/model/ode_utils/__init__.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,523 copying pygom/model/ode_utils/compile_canary.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,525 copying pygom/model/ode_utils/plot_det.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-15T17:42:09,529 creating build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,530 copying pygom/loss/base_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,534 copying pygom/loss/ode_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,536 copying pygom/loss/__init__.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,537 copying pygom/loss/epijson_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,539 copying pygom/loss/get_init.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,542 copying pygom/loss/confidence_interval.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,545 copying pygom/loss/read_epijson.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,547 copying pygom/loss/loss_type.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,550 creating build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-15T17:42:09,551 copying pygom/utilR/distn.py -> build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-15T17:42:09,554 copying pygom/utilR/__init__.py -> build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-15T17:42:09,555 running egg_info 2021-07-15T17:42:09,559 writing pygom.egg-info/PKG-INFO 2021-07-15T17:42:09,561 writing dependency_links to pygom.egg-info/dependency_links.txt 2021-07-15T17:42:09,563 writing requirements to pygom.egg-info/requires.txt 2021-07-15T17:42:09,565 writing top-level names to pygom.egg-info/top_level.txt 2021-07-15T17:42:09,613 reading manifest file 'pygom.egg-info/SOURCES.txt' 2021-07-15T17:42:09,631 reading manifest template 'MANIFEST.in' 2021-07-15T17:42:09,632 warning: no files found matching 'data/*.json' 2021-07-15T17:42:09,633 adding license file 'LICENSE.txt' 2021-07-15T17:42:09,641 writing manifest file 'pygom.egg-info/SOURCES.txt' 2021-07-15T17:42:09,647 creating build/lib.linux-armv7l-3.9/pygom/data 2021-07-15T17:42:09,648 copying pygom/data/eg1.json -> build/lib.linux-armv7l-3.9/pygom/data 2021-07-15T17:42:09,650 copying pygom/model/_tau_leap.c -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,674 copying pygom/model/_tau_leap.pyx -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,676 copying pygom/loss/.gitignore -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-15T17:42:09,682 running build_ext 2021-07-15T17:42:09,745 skipping 'pygom/model/_tau_leap.c' Cython extension (up-to-date) 2021-07-15T17:42:09,746 building 'pygom.model._tau_leap' extension 2021-07-15T17:42:09,747 creating build/temp.linux-armv7l-3.9 2021-07-15T17:42:09,747 creating build/temp.linux-armv7l-3.9/pygom 2021-07-15T17:42:09,748 creating build/temp.linux-armv7l-3.9/pygom/model 2021-07-15T17:42:09,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c pygom/model/_tau_leap.c -o build/temp.linux-armv7l-3.9/pygom/model/_tau_leap.o 2021-07-15T17:42:10,124 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-15T17:42:10,124 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-15T17:42:10,124 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-15T17:42:10,124 from pygom/model/_tau_leap.c:598: 2021-07-15T17:42:10,124 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-15T17:42:10,125 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-15T17:42:10,125 | ^~~~~~~ 2021-07-15T17:42:10,539 pygom/model/_tau_leap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-15T17:42:10,552 pygom/model/_tau_leap.c:20295:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,553 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,553 | ^ 2021-07-15T17:42:10,553 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,553 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,553 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,553 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,554 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,554 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,569 pygom/model/_tau_leap.c:20295:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,569 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,569 | ^ 2021-07-15T17:42:10,569 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,569 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,569 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,570 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T17:42:10,570 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T17:42:10,570 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,584 pygom/model/_tau_leap.c:20295:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,585 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,585 | ^ 2021-07-15T17:42:10,585 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,585 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,585 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,585 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,585 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,586 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,600 pygom/model/_tau_leap.c:20295:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,601 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,601 | ^ 2021-07-15T17:42:10,601 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,601 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,601 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,601 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,601 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,601 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,616 pygom/model/_tau_leap.c:20295:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,616 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,616 | ^ 2021-07-15T17:42:10,617 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,617 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,617 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,617 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T17:42:10,617 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T17:42:10,617 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,632 pygom/model/_tau_leap.c:20295:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,632 20295 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,632 | ^ 2021-07-15T17:42:10,633 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,633 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,633 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,633 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,633 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,633 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,651 pygom/model/_tau_leap.c:20311:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,651 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,652 | ^ 2021-07-15T17:42:10,652 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,652 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,652 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,652 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,652 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,652 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,667 pygom/model/_tau_leap.c:20311:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,667 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,667 | ^ 2021-07-15T17:42:10,667 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,668 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,668 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,668 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T17:42:10,668 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T17:42:10,668 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,683 pygom/model/_tau_leap.c:20311:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,683 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,683 | ^ 2021-07-15T17:42:10,683 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,683 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,684 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,684 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,684 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,684 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,699 pygom/model/_tau_leap.c:20311:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,699 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,699 | ^ 2021-07-15T17:42:10,699 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,699 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,699 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,699 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,700 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,714 pygom/model/_tau_leap.c:20311:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,715 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,715 | ^ 2021-07-15T17:42:10,715 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,715 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,715 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,715 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-15T17:42:10,715 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-15T17:42:10,716 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:10,730 pygom/model/_tau_leap.c:20311:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:10,731 20311 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-15T17:42:10,731 | ^ 2021-07-15T17:42:10,731 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:10,731 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:10,731 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:10,731 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-15T17:42:10,731 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-15T17:42:10,731 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:11,075 pygom/model/_tau_leap.c: In function ‘__Pyx_decode_c_string’: 2021-07-15T17:42:11,089 pygom/model/_tau_leap.c:22018:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-15T17:42:11,089 22018 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-15T17:42:11,089 | ^~~~~~ 2021-07-15T17:42:11,090 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-15T17:42:11,090 from /usr/include/python3.9/Python.h:97, 2021-07-15T17:42:11,090 from pygom/model/_tau_leap.c:4: 2021-07-15T17:42:11,090 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-15T17:42:11,090 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-15T17:42:11,090 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T17:42:19,417 pygom/model/_tau_leap.c: In function ‘__pyx_pf_5pygom_5model_9_tau_leap__cy_test_tau_leap_safety.constprop’: 2021-07-15T17:42:19,419 pygom/model/_tau_leap.c:2877:12: warning: ‘__pyx_v_new_cdf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T17:42:19,419 2877 | if (__pyx_t_5) { 2021-07-15T17:42:19,419 | ^ 2021-07-15T17:42:23,046 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pygom/model/_tau_leap.o -o build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so 2021-07-15T17:42:23,211 installing to build/bdist.linux-armv7l/wheel 2021-07-15T17:42:23,211 running install 2021-07-15T17:42:23,213 running install_lib 2021-07-15T17:42:23,218 creating build/bdist.linux-armv7l 2021-07-15T17:42:23,219 creating build/bdist.linux-armv7l/wheel 2021-07-15T17:42:23,221 creating build/bdist.linux-armv7l/wheel/pygom 2021-07-15T17:42:23,223 creating build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,224 copying build/lib.linux-armv7l-3.9/pygom/model/_model_errors.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,227 copying build/lib.linux-armv7l-3.9/pygom/model/base_ode_model.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,230 copying build/lib.linux-armv7l-3.9/pygom/model/_ode_composition.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,233 copying build/lib.linux-armv7l-3.9/pygom/model/_model_verification.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,236 copying build/lib.linux-armv7l-3.9/pygom/model/transition.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,239 copying build/lib.linux-armv7l-3.9/pygom/model/simulate.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,242 copying build/lib.linux-armv7l-3.9/pygom/model/deterministic.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,247 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.pyx -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,250 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,272 copying build/lib.linux-armv7l-3.9/pygom/model/epi_analysis.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,274 copying build/lib.linux-armv7l-3.9/pygom/model/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,277 copying build/lib.linux-armv7l-3.9/pygom/model/common_models.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,280 copying build/lib.linux-armv7l-3.9/pygom/model/ode_variable.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,282 copying build/lib.linux-armv7l-3.9/pygom/model/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,286 creating build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,287 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/plot_stoc.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,290 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/checks_and_conversions.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,292 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,295 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/compile_canary.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,297 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/plot_det.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-15T17:42:23,299 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.c -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-15T17:42:23,324 creating build/bdist.linux-armv7l/wheel/pygom/data 2021-07-15T17:42:23,325 copying build/lib.linux-armv7l-3.9/pygom/data/eg1.json -> build/bdist.linux-armv7l/wheel/pygom/data 2021-07-15T17:42:23,328 creating build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-15T17:42:23,329 copying build/lib.linux-armv7l-3.9/pygom/utilR/distn.py -> build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-15T17:42:23,331 copying build/lib.linux-armv7l-3.9/pygom/utilR/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-15T17:42:23,334 copying build/lib.linux-armv7l-3.9/pygom/__init__.py -> build/bdist.linux-armv7l/wheel/pygom 2021-07-15T17:42:23,336 creating build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,337 copying build/lib.linux-armv7l-3.9/pygom/loss/base_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,345 copying build/lib.linux-armv7l-3.9/pygom/loss/ode_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,347 copying build/lib.linux-armv7l-3.9/pygom/loss/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,349 copying build/lib.linux-armv7l-3.9/pygom/loss/epijson_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,352 copying build/lib.linux-armv7l-3.9/pygom/loss/get_init.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,355 copying build/lib.linux-armv7l-3.9/pygom/loss/.gitignore -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,357 copying build/lib.linux-armv7l-3.9/pygom/loss/confidence_interval.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,360 copying build/lib.linux-armv7l-3.9/pygom/loss/read_epijson.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,363 copying build/lib.linux-armv7l-3.9/pygom/loss/loss_type.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-15T17:42:23,366 running install_egg_info 2021-07-15T17:42:23,374 Copying pygom.egg-info to build/bdist.linux-armv7l/wheel/pygom-0.1.6-py3.9.egg-info 2021-07-15T17:42:23,387 running install_scripts 2021-07-15T17:42:23,473 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-15T17:42:23,478 creating build/bdist.linux-armv7l/wheel/pygom-0.1.6.dist-info/WHEEL 2021-07-15T17:42:23,480 creating '/tmp/pip-wheel-cnhl_dia/pygom-0.1.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-15T17:42:23,484 adding 'pygom/__init__.py' 2021-07-15T17:42:23,486 adding 'pygom/data/eg1.json' 2021-07-15T17:42:23,488 adding 'pygom/loss/.gitignore' 2021-07-15T17:42:23,490 adding 'pygom/loss/__init__.py' 2021-07-15T17:42:23,498 adding 'pygom/loss/base_loss.py' 2021-07-15T17:42:23,503 adding 'pygom/loss/confidence_interval.py' 2021-07-15T17:42:23,506 adding 'pygom/loss/epijson_loss.py' 2021-07-15T17:42:23,508 adding 'pygom/loss/get_init.py' 2021-07-15T17:42:23,510 adding 'pygom/loss/loss_type.py' 2021-07-15T17:42:23,512 adding 'pygom/loss/ode_loss.py' 2021-07-15T17:42:23,513 adding 'pygom/loss/read_epijson.py' 2021-07-15T17:42:23,516 adding 'pygom/model/__init__.py' 2021-07-15T17:42:23,517 adding 'pygom/model/_model_errors.py' 2021-07-15T17:42:23,519 adding 'pygom/model/_model_verification.py' 2021-07-15T17:42:23,521 adding 'pygom/model/_ode_composition.py' 2021-07-15T17:42:23,596 adding 'pygom/model/_tau_leap.c' 2021-07-15T17:42:23,772 adding 'pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so' 2021-07-15T17:42:23,781 adding 'pygom/model/_tau_leap.pyx' 2021-07-15T17:42:23,786 adding 'pygom/model/base_ode_model.py' 2021-07-15T17:42:23,790 adding 'pygom/model/common_models.py' 2021-07-15T17:42:23,798 adding 'pygom/model/deterministic.py' 2021-07-15T17:42:23,800 adding 'pygom/model/epi_analysis.py' 2021-07-15T17:42:23,802 adding 'pygom/model/ode_variable.py' 2021-07-15T17:42:23,806 adding 'pygom/model/simulate.py' 2021-07-15T17:42:23,809 adding 'pygom/model/stochastic_simulation.py' 2021-07-15T17:42:23,812 adding 'pygom/model/transition.py' 2021-07-15T17:42:23,815 adding 'pygom/model/ode_utils/__init__.py' 2021-07-15T17:42:23,817 adding 'pygom/model/ode_utils/checks_and_conversions.py' 2021-07-15T17:42:23,819 adding 'pygom/model/ode_utils/compile_canary.py' 2021-07-15T17:42:23,821 adding 'pygom/model/ode_utils/plot_det.py' 2021-07-15T17:42:23,823 adding 'pygom/model/ode_utils/plot_stoc.py' 2021-07-15T17:42:23,825 adding 'pygom/utilR/__init__.py' 2021-07-15T17:42:23,827 adding 'pygom/utilR/distn.py' 2021-07-15T17:42:23,831 adding 'pygom-0.1.6.dist-info/LICENSE.txt' 2021-07-15T17:42:23,833 adding 'pygom-0.1.6.dist-info/METADATA' 2021-07-15T17:42:23,834 adding 'pygom-0.1.6.dist-info/WHEEL' 2021-07-15T17:42:23,835 adding 'pygom-0.1.6.dist-info/top_level.txt' 2021-07-15T17:42:23,837 adding 'pygom-0.1.6.dist-info/RECORD' 2021-07-15T17:42:23,847 removing build/bdist.linux-armv7l/wheel 2021-07-15T17:42:23,988 Building wheel for pygom (setup.py): finished with status 'done' 2021-07-15T17:42:23,997 Created wheel for pygom: filename=pygom-0.1.6-cp39-cp39-linux_armv7l.whl size=532412 sha256=5d1d986471ffbaa2bc7f7addcb3968de99c48b726b00f3e2b78559cc4b449b21 2021-07-15T17:42:23,997 Stored in directory: /tmp/pip-ephem-wheel-cache-ed40tfu2/wheels/4b/c8/eb/d9c7ffb58e316083dd2369a7b9e84e964ed434513dd40759e0 2021-07-15T17:42:24,010 Successfully built pygom 2021-07-15T17:42:24,032 Removed build tracker: '/tmp/pip-req-tracker-zv07t3nx'