2021-07-15T18:17:56,417 Created temporary directory: /tmp/pip-ephem-wheel-cache-8sepbgia 2021-07-15T18:17:56,419 Created temporary directory: /tmp/pip-req-tracker-sx1x6260 2021-07-15T18:17:56,420 Initialized build tracking at /tmp/pip-req-tracker-sx1x6260 2021-07-15T18:17:56,420 Created build tracker: /tmp/pip-req-tracker-sx1x6260 2021-07-15T18:17:56,420 Entered build tracker: /tmp/pip-req-tracker-sx1x6260 2021-07-15T18:17:56,421 Created temporary directory: /tmp/pip-wheel-36z7aatf 2021-07-15T18:17:56,450 1 location(s) to search for versions of helen: 2021-07-15T18:17:56,450 * https://pypi.org/simple/helen/ 2021-07-15T18:17:56,451 Fetching project page and analyzing links: https://pypi.org/simple/helen/ 2021-07-15T18:17:56,451 Getting page https://pypi.org/simple/helen/ 2021-07-15T18:17:56,453 Found index url https://pypi.org/simple 2021-07-15T18:17:56,582 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d2/e2/c44fa98afe1a33f7bc229ebad05667cb98af0a9bcfb4eeadabfa0bb88257/helen-0.0.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=a314cdc1822911912772418e0458ec34f8c1f57e4e55a446c1161400ee45cd78 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,582 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/52/43/3027c19654642fc4af904ad4d5ee733a7d5f8cb859584c371dc898d03fc6/helen-0.0.1-py3.6-macosx-10.9-x86_64.egg#sha256=8ab16661fa543894fe719b74f573f5657066e8629a8147efee355ea4837e13ab (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,583 Found link https://files.pythonhosted.org/packages/aa/e3/18e866278beab40d15978c4c573368247c6dfd23e4e5934a44c89b705855/helen-0.0.1.tar.gz#sha256=0e79392b40876e88034e4e66f19cd9b334d8c0cdb9d03c59178d227f775f3d55 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*), version: 0.0.1 2021-07-15T18:17:56,584 Skipping 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tags): https://files.pythonhosted.org/packages/12/a5/d49da6b7b66f9a4fe7e3236f87b7d41b74c597b3c961c1c3b76f6aade545/helen-0.0.13-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=e6b43597bc4f64008e8b9c97483c074aad2fffe326e5b410a65b4afdc5fbdcee (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,596 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f5/c5/722fb51751d641cf66a6d6c6d6edc2cc0761a1fe9401196dc5bb34fbf66e/helen-0.0.13-py3.6-macosx-10.9-x86_64.egg#sha256=0184a7d645e9dc42ba96b8a95dd4a6d5f7a28deb4863430413e02ff3267b5cdc (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,596 Found link https://files.pythonhosted.org/packages/3e/3d/6793b545265629fef9c9565080d59a17ebfedd24b330d7e007632f946d75/helen-0.0.13.tar.gz#sha256=bf6f0de2aa998d774ffeef12b26bf0880526ee44cfdee9f6cb9cca1e30f503c4 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*), version: 0.0.13 2021-07-15T18:17:56,597 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/da/f5c72213359382920342da9be4d0753f505e03cf7b81bd353a19ddecac68/helen-0.0.15-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=051261702167c701b7b274c5d0ff6114b012ced437e1d2153f1b6440dce41be2 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,597 Found link https://files.pythonhosted.org/packages/2b/a4/a82c7b0e09901db8bf6749b0358d09bcf215c75b6d463a16e2c6947f0f97/helen-0.0.15.tar.gz#sha256=07dafd94ed4e1fde3cb635613ebb93a5ace541a685dc58aefcee2e2e4cc37686 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*), version: 0.0.15 2021-07-15T18:17:56,598 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,601 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d1/14/ab48b62a6cc89b81d0559c38b17d4eebc14a16621ffbc5225640a34a4919/helen-0.0.22-py3.6-macosx-10.9-x86_64.egg#sha256=4fddfe57879a6e73a18c67b29130de87a902d1fe997b86c5b31f2921cd3bd7ba (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,602 Found link https://files.pythonhosted.org/packages/0b/ea/4bed86aee5c7599bdc4c3061906a41e1737af591ba8fda392bcff6fd360f/helen-0.0.22.tar.gz#sha256=3ebed820f052da9a8c8010fedace4b3a2c4a3c01e7ef34564d7cf7e444569844 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*), version: 0.0.22 2021-07-15T18:17:56,602 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/b0/ec/33d58e92d7ec3f93ebd8bcdf5760d145ac3277269dceeeb332ed7bf7f462/helen-0.0.23-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=397eb8f175d22d89fa3a87e16aa06e75e380e92aeefb59b29c4955405b57194d (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*) 2021-07-15T18:17:56,603 Found link https://files.pythonhosted.org/packages/6b/82/7188314a6fbf3bd189fa9356440573086ad634949b8402bee7f387e8aaae/helen-0.0.23.tar.gz#sha256=e59fa207667f1d610dd6f768e8536cc0568a274dd4f7b0df841ee2e4f3e50457 (from https://pypi.org/simple/helen/) (requires-python:>=3.5.*), version: 0.0.23 2021-07-15T18:17:56,603 Skipping link: not a file: https://pypi.org/simple/helen/ 2021-07-15T18:17:56,606 Given no hashes to check 1 links for project 'helen': discarding no candidates 2021-07-15T18:17:56,628 Collecting helen==0.0.9 2021-07-15T18:17:56,629 Created temporary directory: /tmp/pip-unpack-cfda8twe 2021-07-15T18:17:57,992 Downloading helen-0.0.9.tar.gz (1.9 MB) 2021-07-15T18:17:58,544 Added helen==0.0.9 from https://files.pythonhosted.org/packages/7c/f9/88acd9d387bae0be1d5462739b8f721144c8204066a80d56e0ee5494060f/helen-0.0.9.tar.gz#sha256=002379a31b98c9cb2ef85646331dea20ab6a51d2d1686b1565e5e5a847e28684 to build tracker '/tmp/pip-req-tracker-sx1x6260' 2021-07-15T18:17:58,545 Running setup.py (path:/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py) egg_info for package helen 2021-07-15T18:17:58,546 Created temporary directory: /tmp/pip-pip-egg-info-ut5u9gcm 2021-07-15T18:17:58,546 Running command python setup.py egg_info 2021-07-15T18:17:59,862 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 2021-07-15T18:17:59,896 running egg_info 2021-07-15T18:17:59,898 creating /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info 2021-07-15T18:17:59,899 writing /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/PKG-INFO 2021-07-15T18:17:59,902 writing dependency_links to /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/dependency_links.txt 2021-07-15T18:17:59,904 writing entry points to /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/entry_points.txt 2021-07-15T18:17:59,905 writing requirements to /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/requires.txt 2021-07-15T18:17:59,906 writing top-level names to /tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/top_level.txt 2021-07-15T18:17:59,907 writing manifest file '/tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/SOURCES.txt' 2021-07-15T18:18:00,055 package init file 'modules/python/helper/__init__.py' not found (or not a regular file) 2021-07-15T18:18:00,087 reading manifest file '/tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/SOURCES.txt' 2021-07-15T18:18:00,090 reading manifest template 'MANIFEST.in' 2021-07-15T18:18:00,091 warning: no files found matching 'build.sh' 2021-07-15T18:18:00,092 warning: no files found matching 'modules/htslib.cmake' 2021-07-15T18:18:00,099 warning: no files found matching '*' under directory 'docker/' 2021-07-15T18:18:00,105 adding license file 'LICENSE' 2021-07-15T18:18:00,110 writing manifest file '/tmp/pip-pip-egg-info-ut5u9gcm/helen.egg-info/SOURCES.txt' 2021-07-15T18:18:00,197 Source in /tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416 has version 0.0.9, which satisfies requirement helen==0.0.9 from https://files.pythonhosted.org/packages/7c/f9/88acd9d387bae0be1d5462739b8f721144c8204066a80d56e0ee5494060f/helen-0.0.9.tar.gz#sha256=002379a31b98c9cb2ef85646331dea20ab6a51d2d1686b1565e5e5a847e28684 2021-07-15T18:18:00,198 Removed helen==0.0.9 from https://files.pythonhosted.org/packages/7c/f9/88acd9d387bae0be1d5462739b8f721144c8204066a80d56e0ee5494060f/helen-0.0.9.tar.gz#sha256=002379a31b98c9cb2ef85646331dea20ab6a51d2d1686b1565e5e5a847e28684 from build tracker '/tmp/pip-req-tracker-sx1x6260' 2021-07-15T18:18:00,205 Created temporary directory: /tmp/pip-unpack-_ep3akkr 2021-07-15T18:18:00,205 Building wheels for collected packages: helen 2021-07-15T18:18:00,209 Created temporary directory: /tmp/pip-wheel-07ehh2xg 2021-07-15T18:18:00,209 Building wheel for helen (setup.py): started 2021-07-15T18:18:00,209 Destination directory: /tmp/pip-wheel-07ehh2xg 2021-07-15T18:18:00,210 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-07ehh2xg 2021-07-15T18:18:01,544 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 2021-07-15T18:18:01,592 running bdist_wheel 2021-07-15T18:18:01,598 running build 2021-07-15T18:18:01,598 running build_py 2021-07-15T18:18:01,739 creating build 2021-07-15T18:18:01,739 creating build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,740 copying helen_train.py -> build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,743 copying __init__.py -> build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,744 copying helen.py -> build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,747 copying marginPolish.py -> build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,749 copying version.py -> build/lib.linux-armv7l-3.9 2021-07-15T18:18:01,752 creating build/lib.linux-armv7l-3.9/modules 2021-07-15T18:18:01,752 creating build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,753 copying modules/python/CallConsensusInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,756 copying modules/python/StitchInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,758 copying modules/python/__init__.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,759 copying modules/python/hyperbandInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,761 copying modules/python/TestInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,763 copying modules/python/PairwiseAlignment.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,765 copying modules/python/FileManager.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,767 copying modules/python/TrainInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,769 copying modules/python/Stitch.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,772 copying modules/python/Options.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,774 copying modules/python/TextColor.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,776 copying modules/python/DataStore.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,778 copying modules/python/PolishInterface.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,781 copying modules/python/DownloadModel.py -> build/lib.linux-armv7l-3.9/modules/python 2021-07-15T18:18:01,784 creating build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,785 copying modules/python/models/TransducerModel.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,787 copying modules/python/models/predict_gpu.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,790 copying modules/python/models/dataloader.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,792 copying modules/python/models/__init__.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,793 copying modules/python/models/train.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,797 copying modules/python/models/dataloader_predict.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,800 copying modules/python/models/ModelHander.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,803 copying modules/python/models/dataloader_debug.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,806 copying modules/python/models/hyperband.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,809 copying modules/python/models/train_distributed.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,812 copying modules/python/models/test.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,815 copying modules/python/models/test_debug.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,819 copying modules/python/models/predict_cpu.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,826 copying modules/python/models/predict.py -> build/lib.linux-armv7l-3.9/modules/python/models 2021-07-15T18:18:01,826 package init file 'modules/python/helper/__init__.py' not found (or not a regular file) 2021-07-15T18:18:01,828 creating build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,829 copying modules/python/helper/test_pairwisealigner.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,831 copying modules/python/helper/VCF_remove_phase.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,834 copying modules/python/helper/tensor_analyzer.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,836 copying modules/python/helper/hdf5_reader.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,839 copying modules/python/helper/assess_summary_analyzer.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,841 copying modules/python/helper/csv_analyzer.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,843 copying modules/python/helper/quast_sv_extractor.py -> build/lib.linux-armv7l-3.9/modules/python/helper 2021-07-15T18:18:01,850 running build_ext 2021-07-15T18:18:01,908 CMAKE VERSION: 3.18.4 2021-07-15T18:18:01,909 ---------- Running CMake prepare ---------------------------------------- 2021-07-15T18:18:02,278 -- The C compiler identification is GNU 10.2.1 2021-07-15T18:18:02,648 -- The CXX compiler identification is GNU 10.2.1 2021-07-15T18:18:02,708 -- Detecting C compiler ABI info 2021-07-15T18:18:03,126 -- Detecting C compiler ABI info - done 2021-07-15T18:18:03,199 -- Check for working C compiler: /usr/bin/cc - skipped 2021-07-15T18:18:03,201 -- Detecting C compile features 2021-07-15T18:18:03,203 -- Detecting C compile features - done 2021-07-15T18:18:03,229 -- Detecting CXX compiler ABI info 2021-07-15T18:18:03,693 -- Detecting CXX compiler ABI info - done 2021-07-15T18:18:03,764 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2021-07-15T18:18:03,765 -- Detecting CXX compile features 2021-07-15T18:18:03,769 -- Detecting CXX compile features - done 2021-07-15T18:18:03,895 -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.9.2", minimum required is "3") 2021-07-15T18:18:03,929 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so (found suitable version "3.9.2", minimum required is "3") 2021-07-15T18:18:03,930 Python found 2021-07-15T18:18:05,160 -- Found PythonInterp: /usr/bin/python3 (found version "3.9.2") 2021-07-15T18:18:05,295 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.9.so 2021-07-15T18:18:05,318 -- pybind11 v2.2.4 2021-07-15T18:18:05,578 -- Performing Test HAS_FLTO 2021-07-15T18:18:06,258 -- Performing Test HAS_FLTO - Success 2021-07-15T18:18:06,260 -- LTO enabled 2021-07-15T18:18:06,263 -- Configuring done 2021-07-15T18:18:06,323 -- Generating done 2021-07-15T18:18:06,340 -- Build files have been written to: /tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/build/temp.linux-armv7l-3.9 2021-07-15T18:18:06,360 ---------- Building extensions ---------------------------------------- 2021-07-15T18:18:06,593 Scanning dependencies of target marginpolish 2021-07-15T18:18:06,664 [ 10%] Creating directories for 'marginpolish' 2021-07-15T18:18:06,669 Scanning dependencies of target HELEN 2021-07-15T18:18:06,728 [ 20%] Building CXX object CMakeFiles/HELEN.dir/modules/src/pybind_api.cpp.o 2021-07-15T18:18:06,784 In file included from /tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/modules/src/pybind_api.cpp:5: 2021-07-15T18:18:06,784 /tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/modules/src/local_reassembly/ssw.c:39:10: fatal error: emmintrin.h: No such file or directory 2021-07-15T18:18:06,784 39 | #include 2021-07-15T18:18:06,784 | ^~~~~~~~~~~~~ 2021-07-15T18:18:06,785 compilation terminated. 2021-07-15T18:18:06,788 gmake[2]: *** [CMakeFiles/HELEN.dir/build.make:82: CMakeFiles/HELEN.dir/modules/src/pybind_api.cpp.o] Error 1 2021-07-15T18:18:06,789 gmake[1]: *** [CMakeFiles/Makefile2:117: CMakeFiles/HELEN.dir/all] Error 2 2021-07-15T18:18:06,789 gmake[1]: *** Waiting for unfinished jobs.... 2021-07-15T18:18:07,061 [ 30%] Performing download step (git clone) for 'marginpolish' 2021-07-15T18:18:07,164 Cloning into 'marginpolish'... 2021-07-15T18:18:07,205 fatal: transport 'https' not allowed 2021-07-15T18:18:07,229 Cloning into 'marginpolish'... 2021-07-15T18:18:07,270 fatal: transport 'https' not allowed 2021-07-15T18:18:07,297 Cloning into 'marginpolish'... 2021-07-15T18:18:07,352 fatal: transport 'https' not allowed 2021-07-15T18:18:07,368 -- Had to git clone more than once: 2021-07-15T18:18:07,368 3 times. 2021-07-15T18:18:07,368 CMake Error at /tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/build/temp.linux-armv7l-3.9/marginpolish/tmp/marginpolish-gitclone.cmake:31 (message): 2021-07-15T18:18:07,369 Failed to clone repository: 2021-07-15T18:18:07,369 'https://github.com/UCSC-nanopore-cgl/MarginPolish.git' 2021-07-15T18:18:07,374 gmake[2]: *** [CMakeFiles/marginpolish.dir/build.make:110: marginpolish/src/marginpolish-stamp/marginpolish-download] Error 1 2021-07-15T18:18:07,375 gmake[1]: *** [CMakeFiles/Makefile2:144: CMakeFiles/marginpolish.dir/all] Error 2 2021-07-15T18:18:07,376 gmake: *** [Makefile:103: all] Error 2 2021-07-15T18:18:07,383 Traceback (most recent call last): 2021-07-15T18:18:07,384 File "", line 1, in 2021-07-15T18:18:07,384 File "/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py", line 162, in 2021-07-15T18:18:07,385 setup( 2021-07-15T18:18:07,385 File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup 2021-07-15T18:18:07,386 return distutils.core.setup(**attrs) 2021-07-15T18:18:07,386 File "/usr/lib/python3.9/distutils/core.py", line 148, in setup 2021-07-15T18:18:07,386 dist.run_commands() 2021-07-15T18:18:07,386 File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands 2021-07-15T18:18:07,388 self.run_command(cmd) 2021-07-15T18:18:07,388 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-15T18:18:07,389 cmd_obj.run() 2021-07-15T18:18:07,389 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run 2021-07-15T18:18:07,390 self.run_command('build') 2021-07-15T18:18:07,390 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-15T18:18:07,391 self.distribution.run_command(command) 2021-07-15T18:18:07,391 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-15T18:18:07,392 cmd_obj.run() 2021-07-15T18:18:07,392 File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run 2021-07-15T18:18:07,393 self.run_command(cmd_name) 2021-07-15T18:18:07,393 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-15T18:18:07,393 self.distribution.run_command(command) 2021-07-15T18:18:07,394 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-15T18:18:07,395 cmd_obj.run() 2021-07-15T18:18:07,395 File "/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py", line 70, in run 2021-07-15T18:18:07,396 subprocess.check_call(cmake_cmd, 2021-07-15T18:18:07,396 File "/usr/lib/python3.9/subprocess.py", line 373, in check_call 2021-07-15T18:18:07,396 raise CalledProcessError(retcode, cmd) 2021-07-15T18:18:07,397 subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2. 2021-07-15T18:18:07,483 Building wheel for helen (setup.py): finished with status 'error' 2021-07-15T18:18:07,484 ERROR: Failed building wheel for helen 2021-07-15T18:18:07,484 Running setup.py clean for helen 2021-07-15T18:18:07,485 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-36z7aatf/helen_df6060d6ec4a4d81951ee0e104567416/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T18:18:08,853 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 2021-07-15T18:18:08,879 running clean 2021-07-15T18:18:08,881 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T18:18:08,995 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-15T18:18:09,012 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T18:18:09,012 'build/scripts-3.9' does not exist -- can't clean it 2021-07-15T18:18:09,012 removing 'build' 2021-07-15T18:18:09,085 Failed to build helen 2021-07-15T18:18:09,085 ERROR: Failed to build one or more wheels 2021-07-15T18:18:09,086 Exception information: 2021-07-15T18:18:09,086 Traceback (most recent call last): 2021-07-15T18:18:09,086 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T18:18:09,086 status = self.run(options, args) 2021-07-15T18:18:09,086 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T18:18:09,086 return func(self, options, args) 2021-07-15T18:18:09,086 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T18:18:09,086 raise CommandError( 2021-07-15T18:18:09,086 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T18:18:09,089 Removed build tracker: '/tmp/pip-req-tracker-sx1x6260'