2021-07-15T21:48:38,930 Created temporary directory: /tmp/pip-ephem-wheel-cache-yu_1mfe1 2021-07-15T21:48:38,933 Created temporary directory: /tmp/pip-req-tracker-pfs5efy6 2021-07-15T21:48:38,933 Initialized build tracking at /tmp/pip-req-tracker-pfs5efy6 2021-07-15T21:48:38,934 Created build tracker: /tmp/pip-req-tracker-pfs5efy6 2021-07-15T21:48:38,934 Entered build tracker: /tmp/pip-req-tracker-pfs5efy6 2021-07-15T21:48:38,934 Created temporary directory: /tmp/pip-wheel-5q5b3gho 2021-07-15T21:48:38,970 1 location(s) to search for versions of maagbel: 2021-07-15T21:48:38,970 * https://pypi.org/simple/maagbel/ 2021-07-15T21:48:38,971 Fetching project page and analyzing links: https://pypi.org/simple/maagbel/ 2021-07-15T21:48:38,971 Getting page https://pypi.org/simple/maagbel/ 2021-07-15T21:48:38,973 Found index url https://pypi.org/simple 2021-07-15T21:48:39,066 Found link https://files.pythonhosted.org/packages/66/de/8fe70531b8e76dcc8f1208ab3bee0fe940b515b9c5b2bf66832f627331c9/maagbel-0.1.1.tar.gz#sha256=3bb123b08837abaa25719eb1598b5536abdfe2dcafab28e24feb8fb237461b70 (from https://pypi.org/simple/maagbel/), version: 0.1.1 2021-07-15T21:48:39,066 Found link https://files.pythonhosted.org/packages/56/df/95416ae78c46c743df0739d430805645965f57b4cee30083ac8ff9c1ece7/maagbel-0.1.2.tar.gz#sha256=c867e88cbacdc3e8515e2d7d1b33b0ab5430768623644aeec5f01830d76f0575 (from https://pypi.org/simple/maagbel/), version: 0.1.2 2021-07-15T21:48:39,067 Skipping link: not a file: https://pypi.org/simple/maagbel/ 2021-07-15T21:48:39,086 Given no hashes to check 1 links for project 'maagbel': discarding no candidates 2021-07-15T21:48:39,106 Collecting maagbel==0.1.1 2021-07-15T21:48:39,108 Created temporary directory: /tmp/pip-unpack-vtjja10a 2021-07-15T21:48:39,785 Downloading maagbel-0.1.1.tar.gz (1.8 MB) 2021-07-15T21:48:41,775 Added maagbel==0.1.1 from https://files.pythonhosted.org/packages/66/de/8fe70531b8e76dcc8f1208ab3bee0fe940b515b9c5b2bf66832f627331c9/maagbel-0.1.1.tar.gz#sha256=3bb123b08837abaa25719eb1598b5536abdfe2dcafab28e24feb8fb237461b70 to build tracker '/tmp/pip-req-tracker-pfs5efy6' 2021-07-15T21:48:41,776 Running setup.py (path:/tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865/setup.py) egg_info for package maagbel 2021-07-15T21:48:41,777 Created temporary directory: /tmp/pip-pip-egg-info-f4nfp6uf 2021-07-15T21:48:41,778 Running command python setup.py egg_info 2021-07-15T21:48:43,067 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T21:48:43,068 warnings.warn(msg) 2021-07-15T21:48:43,209 running egg_info 2021-07-15T21:48:43,211 creating /tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info 2021-07-15T21:48:43,213 writing /tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/PKG-INFO 2021-07-15T21:48:43,215 writing dependency_links to /tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/dependency_links.txt 2021-07-15T21:48:43,217 writing top-level names to /tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/top_level.txt 2021-07-15T21:48:43,219 writing manifest file '/tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:48:43,614 reading manifest file '/tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:48:43,617 reading manifest template 'MANIFEST.in' 2021-07-15T21:48:43,661 writing manifest file '/tmp/pip-pip-egg-info-f4nfp6uf/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:48:43,756 Source in /tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865 has version 0.1.1, which satisfies requirement maagbel==0.1.1 from https://files.pythonhosted.org/packages/66/de/8fe70531b8e76dcc8f1208ab3bee0fe940b515b9c5b2bf66832f627331c9/maagbel-0.1.1.tar.gz#sha256=3bb123b08837abaa25719eb1598b5536abdfe2dcafab28e24feb8fb237461b70 2021-07-15T21:48:43,757 Removed maagbel==0.1.1 from https://files.pythonhosted.org/packages/66/de/8fe70531b8e76dcc8f1208ab3bee0fe940b515b9c5b2bf66832f627331c9/maagbel-0.1.1.tar.gz#sha256=3bb123b08837abaa25719eb1598b5536abdfe2dcafab28e24feb8fb237461b70 from build tracker '/tmp/pip-req-tracker-pfs5efy6' 2021-07-15T21:48:43,761 Created temporary directory: /tmp/pip-unpack-36f9i9r3 2021-07-15T21:48:43,762 Building wheels for collected packages: maagbel 2021-07-15T21:48:43,766 Created temporary directory: /tmp/pip-wheel-kexkoqvj 2021-07-15T21:48:43,766 Building wheel for maagbel (setup.py): started 2021-07-15T21:48:43,767 Destination directory: /tmp/pip-wheel-kexkoqvj 2021-07-15T21:48:43,767 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-kexkoqvj 2021-07-15T21:48:44,930 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T21:48:44,931 warnings.warn(msg) 2021-07-15T21:48:45,102 running bdist_wheel 2021-07-15T21:48:45,280 running build 2021-07-15T21:48:45,280 running build_ext 2021-07-15T21:48:45,287 building 'maagbel._cpp' extension 2021-07-15T21:48:45,289 swigging maagbel/cpp.i to maagbel/cpp_wrap.cpp 2021-07-15T21:48:45,289 swig -python -c++ -Iinclude -o maagbel/cpp_wrap.cpp maagbel/cpp.i 2021-07-15T21:48:47,564 include/openbabel/obconversion.h:369: Warning 325: Nested struct not currently supported (StreamState ignored) 2021-07-15T21:48:48,356 include/openbabel/isomorphism.h:159: Warning 325: Nested class not currently supported (Functor ignored) 2021-07-15T21:48:48,552 include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). 2021-07-15T21:48:48,554 include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). 2021-07-15T21:49:11,718 creating build 2021-07-15T21:49:11,718 creating build/temp.linux-armv7l-3.9 2021-07-15T21:49:11,719 creating build/temp.linux-armv7l-3.9/src 2021-07-15T21:49:11,720 creating build/temp.linux-armv7l-3.9/src/charges 2021-07-15T21:49:11,722 creating build/temp.linux-armv7l-3.9/src/depict 2021-07-15T21:49:11,723 creating build/temp.linux-armv7l-3.9/src/descriptors 2021-07-15T21:49:11,724 creating build/temp.linux-armv7l-3.9/src/fingerprints 2021-07-15T21:49:11,724 creating build/temp.linux-armv7l-3.9/src/forcefields 2021-07-15T21:49:11,725 creating build/temp.linux-armv7l-3.9/src/formats 2021-07-15T21:49:11,731 creating build/temp.linux-armv7l-3.9/src/math 2021-07-15T21:49:11,732 creating build/temp.linux-armv7l-3.9/src/ops 2021-07-15T21:49:11,735 creating build/temp.linux-armv7l-3.9/src/stereo 2021-07-15T21:49:11,736 creating build/temp.linux-armv7l-3.9/maagbel 2021-07-15T21:49:11,736 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/aggregate.cpp -o build/temp.linux-armv7l-3.9/./src/aggregate.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:11,751 Using built-in specs. 2021-07-15T21:49:11,753 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:11,754 Target: arm-linux-gnueabihf 2021-07-15T21:49:11,754 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:11,754 Thread model: posix 2021-07-15T21:49:11,755 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:11,755 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:11,756 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:11,760 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/aggregate.cpp -quiet -dumpbase aggregate.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/aggregate.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccegs8Wh.s 2021-07-15T21:49:11,775 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:11,776 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:11,777 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:11,778 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:11,779 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:11,779 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:11,779 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:11,779 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:11,780 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:11,780 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:11,780 #include "..." search starts here: 2021-07-15T21:49:11,781 #include <...> search starts here: 2021-07-15T21:49:11,781 /usr/include/eigen3 2021-07-15T21:49:11,781 include 2021-07-15T21:49:11,781 /usr/include/python3.9 2021-07-15T21:49:11,782 /usr/include/c++/10 2021-07-15T21:49:11,782 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:11,782 /usr/include/c++/10/backward 2021-07-15T21:49:11,782 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:11,782 /usr/local/include 2021-07-15T21:49:11,782 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:11,783 /usr/include 2021-07-15T21:49:11,783 End of search list. 2021-07-15T21:49:11,783 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:11,783 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:11,784 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:11,800 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:14,014 In file included from include/openbabel/atom.h:33, 2021-07-15T21:49:14,015 from include/openbabel/mol.h:43, 2021-07-15T21:49:14,015 from ./src/aggregate.cpp:20: 2021-07-15T21:49:14,015 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:49:14,016 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:49:14,016 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:49:14,016 | ^ 2021-07-15T21:49:14,016 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:14,017 37 | # define UNUSED(x) x 2021-07-15T21:49:14,017 | ^ 2021-07-15T21:49:14,973 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:14,973 from ./src/aggregate.cpp:20: 2021-07-15T21:49:14,974 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:14,974 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:14,974 862 | {return new OBVibrationData(*this);} 2021-07-15T21:49:14,974 | ^ 2021-07-15T21:49:14,975 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:49:14,975 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:49:14,975 | ^~~~~~~~ 2021-07-15T21:49:14,979 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:14,979 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:14,979 907 | {return new OBDOSData(*this);} 2021-07-15T21:49:14,979 | ^ 2021-07-15T21:49:14,980 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:49:14,980 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:49:14,980 | ^~~~~~~~ 2021-07-15T21:49:15,002 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:15,002 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:15,002 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:49:15,003 | ^ 2021-07-15T21:49:15,003 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:49:15,003 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:49:15,003 | ^~~~~~~~ 2021-07-15T21:49:15,009 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:15,009 from ./src/aggregate.cpp:20: 2021-07-15T21:49:15,009 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:15,009 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:15,010 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:49:15,010 | ^ 2021-07-15T21:49:15,010 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:49:15,011 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:49:15,011 | ^~~~~~~~ 2021-07-15T21:49:15,274 In file included from include/openbabel/atom.h:33, 2021-07-15T21:49:15,274 from include/openbabel/mol.h:43, 2021-07-15T21:49:15,275 from ./src/aggregate.cpp:20: 2021-07-15T21:49:15,275 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:49:15,275 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:49:15,276 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:49:15,276 | ^ 2021-07-15T21:49:15,276 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:15,276 37 | # define UNUSED(x) x 2021-07-15T21:49:15,276 | ^ 2021-07-15T21:49:15,277 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:49:15,277 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:49:15,277 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:49:15,277 | ^ 2021-07-15T21:49:15,278 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:15,278 37 | # define UNUSED(x) x 2021-07-15T21:49:15,278 | ^ 2021-07-15T21:49:15,638 ./src/aggregate.cpp: In member function ‘float OpenBabel::OBAggregate::MinVDWDist(bool, double)’: 2021-07-15T21:49:15,638 ./src/aggregate.cpp:151:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:49:15,639 151 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:49:15,639 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:15,639 ./src/aggregate.cpp:156:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:49:15,639 156 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:49:15,640 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:15,649 ./src/aggregate.cpp: In member function ‘bool OpenBabel::OBAggregate::IsGoodVDW(double, double)’: 2021-07-15T21:49:15,650 ./src/aggregate.cpp:245:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:49:15,650 245 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:49:15,650 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:15,674 ./src/aggregate.cpp: In member function ‘void OpenBabel::OBAggregate::FindAllConnections(bool)’: 2021-07-15T21:49:15,674 ./src/aggregate.cpp:316:20: warning: unused variable ‘a’ [-Wunused-variable] 2021-07-15T21:49:15,674 316 | OBAtom *atom, *a; 2021-07-15T21:49:15,674 | ^ 2021-07-15T21:49:15,702 ./src/aggregate.cpp: In member function ‘std::string OpenBabel::OBAggregate::GetConnections()’: 2021-07-15T21:49:15,702 ./src/aggregate.cpp:558:13: warning: unused variable ‘id’ [-Wunused-variable] 2021-07-15T21:49:15,703 558 | int id = -1; 2021-07-15T21:49:15,703 | ^~ 2021-07-15T21:49:15,703 ./src/aggregate.cpp:559:13: warning: unused variable ‘elements’ [-Wunused-variable] 2021-07-15T21:49:15,704 559 | int elements = 0; 2021-07-15T21:49:15,704 | ^~~~~~~~ 2021-07-15T21:49:15,709 ./src/aggregate.cpp: In member function ‘void OpenBabel::OBAggregate::PrintConnections()’: 2021-07-15T21:49:15,709 ./src/aggregate.cpp:584:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:49:15,709 584 | if ( atom->GetIdx() != id+1 ){ 2021-07-15T21:49:15,710 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T21:49:15,745 ./src/aggregate.cpp: In member function ‘bool OpenBabel::OBAggregate::AddToTag(int, int)’: 2021-07-15T21:49:15,745 ./src/aggregate.cpp:772:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:49:15,745 772 | if (tag >= _molTags.size() || tag<0){ 2021-07-15T21:49:15,746 | ~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:21,951 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:49:21,951 from include/openbabel/mol.h:35, 2021-07-15T21:49:21,952 from ./src/aggregate.cpp:20: 2021-07-15T21:49:21,952 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:49:21,952 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:49:21,952 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:49:21,953 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:23,360 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBAggregate::IsGoodVDW(double, double)’: 2021-07-15T21:49:23,361 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:49:23,361 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:49:23,361 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:23,362 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:49:23,362 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:49:23,362 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:49:25,394 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:25,394 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/aggregate.o /tmp/ccegs8Wh.s 2021-07-15T21:49:25,400 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:49:26,165 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:49:26,165 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:49:26,165 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:26,168 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/alias.cpp -o build/temp.linux-armv7l-3.9/./src/alias.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:26,178 Using built-in specs. 2021-07-15T21:49:26,179 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:26,180 Target: arm-linux-gnueabihf 2021-07-15T21:49:26,180 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:26,180 Thread model: posix 2021-07-15T21:49:26,180 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:26,181 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:26,181 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:26,181 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/alias.cpp -quiet -dumpbase alias.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/alias.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccLEGP6w.s 2021-07-15T21:49:26,194 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:26,195 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:26,195 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:26,195 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:26,196 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:26,196 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:26,196 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:26,196 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:26,196 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:26,197 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:26,197 #include "..." search starts here: 2021-07-15T21:49:26,197 #include <...> search starts here: 2021-07-15T21:49:26,197 /usr/include/eigen3 2021-07-15T21:49:26,197 include 2021-07-15T21:49:26,197 /usr/include/python3.9 2021-07-15T21:49:26,198 /usr/include/c++/10 2021-07-15T21:49:26,198 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:26,198 /usr/include/c++/10/backward 2021-07-15T21:49:26,198 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:26,198 /usr/local/include 2021-07-15T21:49:26,199 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:26,199 /usr/include 2021-07-15T21:49:26,199 End of search list. 2021-07-15T21:49:26,199 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:26,199 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:26,200 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:26,213 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:27,933 In file included from include/openbabel/atom.h:33, 2021-07-15T21:49:27,933 from include/openbabel/mol.h:43, 2021-07-15T21:49:27,933 from include/openbabel/alias.h:20, 2021-07-15T21:49:27,933 from ./src/alias.cpp:17: 2021-07-15T21:49:27,934 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:49:27,934 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:49:27,934 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:49:27,934 | ^ 2021-07-15T21:49:27,935 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:27,935 37 | # define UNUSED(x) x 2021-07-15T21:49:27,935 | ^ 2021-07-15T21:49:28,722 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:28,723 from include/openbabel/alias.h:20, 2021-07-15T21:49:28,723 from ./src/alias.cpp:17: 2021-07-15T21:49:28,723 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:28,723 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:28,723 862 | {return new OBVibrationData(*this);} 2021-07-15T21:49:28,724 | ^ 2021-07-15T21:49:28,724 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:49:28,724 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:49:28,724 | ^~~~~~~~ 2021-07-15T21:49:28,727 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:28,727 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:28,727 907 | {return new OBDOSData(*this);} 2021-07-15T21:49:28,728 | ^ 2021-07-15T21:49:28,728 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:49:28,728 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:49:28,728 | ^~~~~~~~ 2021-07-15T21:49:28,746 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:28,746 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:28,747 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:49:28,747 | ^ 2021-07-15T21:49:28,747 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:49:28,747 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:49:28,748 | ^~~~~~~~ 2021-07-15T21:49:28,752 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:28,752 from include/openbabel/alias.h:20, 2021-07-15T21:49:28,752 from ./src/alias.cpp:17: 2021-07-15T21:49:28,752 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:28,753 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:28,753 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:49:28,753 | ^ 2021-07-15T21:49:28,753 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:49:28,753 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:49:28,754 | ^~~~~~~~ 2021-07-15T21:49:29,312 ./src/alias.cpp: At global scope: 2021-07-15T21:49:29,312 ./src/alias.cpp:284:74: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:49:29,312 284 | void AliasData::AddExpandedAtom(int id) { _expandedatoms.push_back(id); }; 2021-07-15T21:49:29,312 | ^ 2021-07-15T21:49:35,179 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:35,179 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/alias.o /tmp/ccLEGP6w.s 2021-07-15T21:49:35,185 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:49:35,602 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:49:35,603 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:49:35,603 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:35,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/atom.cpp -o build/temp.linux-armv7l-3.9/./src/atom.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:35,615 Using built-in specs. 2021-07-15T21:49:35,616 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:35,617 Target: arm-linux-gnueabihf 2021-07-15T21:49:35,617 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:35,617 Thread model: posix 2021-07-15T21:49:35,617 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:35,618 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:35,618 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:35,618 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/atom.cpp -quiet -dumpbase atom.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/atom.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccvWrZTK.s 2021-07-15T21:49:35,632 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:35,632 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:35,633 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:35,633 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:35,633 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:35,633 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:35,633 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:35,634 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:35,634 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:35,634 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:35,634 #include "..." search starts here: 2021-07-15T21:49:35,634 #include <...> search starts here: 2021-07-15T21:49:35,634 /usr/include/eigen3 2021-07-15T21:49:35,635 include 2021-07-15T21:49:35,635 /usr/include/python3.9 2021-07-15T21:49:35,635 /usr/include/c++/10 2021-07-15T21:49:35,635 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:35,635 /usr/include/c++/10/backward 2021-07-15T21:49:35,636 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:35,636 /usr/local/include 2021-07-15T21:49:35,636 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:35,636 /usr/include 2021-07-15T21:49:35,636 End of search list. 2021-07-15T21:49:35,636 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:35,637 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:35,637 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:35,654 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:37,144 In file included from include/openbabel/atom.h:33, 2021-07-15T21:49:37,144 from ./src/atom.cpp:22: 2021-07-15T21:49:37,144 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:49:37,144 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:49:37,145 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:49:37,145 | ^ 2021-07-15T21:49:37,145 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:37,145 37 | # define UNUSED(x) x 2021-07-15T21:49:37,145 | ^ 2021-07-15T21:49:38,193 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:38,193 from include/openbabel/isomorphism.h:27, 2021-07-15T21:49:38,194 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:49:38,194 from ./src/atom.cpp:23: 2021-07-15T21:49:38,194 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:38,194 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:38,194 862 | {return new OBVibrationData(*this);} 2021-07-15T21:49:38,195 | ^ 2021-07-15T21:49:38,195 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:49:38,195 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:49:38,196 | ^~~~~~~~ 2021-07-15T21:49:38,199 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:38,199 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:38,199 907 | {return new OBDOSData(*this);} 2021-07-15T21:49:38,199 | ^ 2021-07-15T21:49:38,200 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:49:38,200 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:49:38,200 | ^~~~~~~~ 2021-07-15T21:49:38,222 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:38,222 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:38,222 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:49:38,223 | ^ 2021-07-15T21:49:38,223 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:49:38,223 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:49:38,223 | ^~~~~~~~ 2021-07-15T21:49:38,229 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:38,229 from include/openbabel/isomorphism.h:27, 2021-07-15T21:49:38,229 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:49:38,229 from ./src/atom.cpp:23: 2021-07-15T21:49:38,230 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:38,230 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:38,230 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:49:38,230 | ^ 2021-07-15T21:49:38,230 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:49:38,231 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:49:38,231 | ^~~~~~~~ 2021-07-15T21:49:38,679 ./src/atom.cpp: In member function ‘int OpenBabel::OBAtom::HighestBondOrder()’: 2021-07-15T21:49:38,679 ./src/atom.cpp:302:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:49:38,680 302 | if(bond->GetBO() > highest) 2021-07-15T21:49:38,680 | ~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T21:49:46,360 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:46,361 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/atom.o /tmp/ccvWrZTK.s 2021-07-15T21:49:46,368 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:49:46,902 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:49:46,903 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:49:46,903 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:46,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/base.cpp -o build/temp.linux-armv7l-3.9/./src/base.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:46,916 Using built-in specs. 2021-07-15T21:49:46,917 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:46,918 Target: arm-linux-gnueabihf 2021-07-15T21:49:46,918 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:46,918 Thread model: posix 2021-07-15T21:49:46,918 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:46,918 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:46,919 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:46,919 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/base.cpp -quiet -dumpbase base.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/base.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpF48ZY.s 2021-07-15T21:49:46,932 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:46,932 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:46,933 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:46,933 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:46,933 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:46,933 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:46,933 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:46,934 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:46,934 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:46,934 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:46,934 #include "..." search starts here: 2021-07-15T21:49:46,934 #include <...> search starts here: 2021-07-15T21:49:46,934 /usr/include/eigen3 2021-07-15T21:49:46,935 include 2021-07-15T21:49:46,935 /usr/include/python3.9 2021-07-15T21:49:46,935 /usr/include/c++/10 2021-07-15T21:49:46,935 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:46,935 /usr/include/c++/10/backward 2021-07-15T21:49:46,936 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:46,936 /usr/local/include 2021-07-15T21:49:46,936 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:46,936 /usr/include 2021-07-15T21:49:46,936 End of search list. 2021-07-15T21:49:46,936 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:46,937 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:46,937 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:46,954 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:48,412 In file included from ./src/base.cpp:21: 2021-07-15T21:49:48,412 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:49:48,413 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:49:48,413 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:49:48,413 | ^ 2021-07-15T21:49:48,413 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:48,414 37 | # define UNUSED(x) x 2021-07-15T21:49:48,414 | ^ 2021-07-15T21:49:49,619 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:49,619 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/base.o /tmp/ccpF48ZY.s 2021-07-15T21:49:49,624 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:49:49,758 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:49:49,759 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:49:49,759 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:49,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bitvec.cpp -o build/temp.linux-armv7l-3.9/./src/bitvec.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:49,770 Using built-in specs. 2021-07-15T21:49:49,771 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:49,771 Target: arm-linux-gnueabihf 2021-07-15T21:49:49,772 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:49,772 Thread model: posix 2021-07-15T21:49:49,772 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:49,772 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:49,772 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:49,772 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bitvec.cpp -quiet -dumpbase bitvec.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bitvec.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccJ4pQIc.s 2021-07-15T21:49:49,783 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:49,784 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:49,784 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:49,784 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:49,784 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:49,784 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:49,785 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:49,785 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:49,785 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:49,785 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:49,785 #include "..." search starts here: 2021-07-15T21:49:49,786 #include <...> search starts here: 2021-07-15T21:49:49,786 /usr/include/eigen3 2021-07-15T21:49:49,786 include 2021-07-15T21:49:49,786 /usr/include/python3.9 2021-07-15T21:49:49,786 /usr/include/c++/10 2021-07-15T21:49:49,786 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:49,786 /usr/include/c++/10/backward 2021-07-15T21:49:49,786 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:49,787 /usr/local/include 2021-07-15T21:49:49,787 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:49,787 /usr/include 2021-07-15T21:49:49,787 End of search list. 2021-07-15T21:49:49,787 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:49,787 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:49,788 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:49,802 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:54,095 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:54,095 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bitvec.o /tmp/ccJ4pQIc.s 2021-07-15T21:49:54,100 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:49:54,416 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:49:54,416 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:49:54,417 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:54,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bond.cpp -o build/temp.linux-armv7l-3.9/./src/bond.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:49:54,436 Using built-in specs. 2021-07-15T21:49:54,440 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:49:54,441 Target: arm-linux-gnueabihf 2021-07-15T21:49:54,441 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:49:54,442 Thread model: posix 2021-07-15T21:49:54,443 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:49:54,443 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:49:54,445 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:54,452 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bond.cpp -quiet -dumpbase bond.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bond.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc5qO8Tn.s 2021-07-15T21:49:54,463 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:54,463 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:54,463 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:54,464 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:49:54,464 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:49:54,464 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:49:54,464 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:49:54,464 ignoring duplicate directory "/usr/include/" 2021-07-15T21:49:54,464 as it is a non-system directory that duplicates a system directory 2021-07-15T21:49:54,464 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:49:54,465 #include "..." search starts here: 2021-07-15T21:49:54,465 #include <...> search starts here: 2021-07-15T21:49:54,465 /usr/include/eigen3 2021-07-15T21:49:54,465 include 2021-07-15T21:49:54,465 /usr/include/python3.9 2021-07-15T21:49:54,465 /usr/include/c++/10 2021-07-15T21:49:54,465 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:49:54,466 /usr/include/c++/10/backward 2021-07-15T21:49:54,466 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:49:54,466 /usr/local/include 2021-07-15T21:49:54,466 /usr/include/arm-linux-gnueabihf 2021-07-15T21:49:54,466 /usr/include 2021-07-15T21:49:54,466 End of search list. 2021-07-15T21:49:54,467 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:49:54,467 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:49:54,467 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:49:54,479 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:49:55,988 In file included from include/openbabel/bond.h:31, 2021-07-15T21:49:55,988 from ./src/bond.cpp:21: 2021-07-15T21:49:55,989 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:49:55,989 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:49:55,989 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:49:55,989 | ^ 2021-07-15T21:49:55,990 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:49:55,990 37 | # define UNUSED(x) x 2021-07-15T21:49:55,990 | ^ 2021-07-15T21:49:56,846 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:56,846 from ./src/bond.cpp:22: 2021-07-15T21:49:56,846 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:56,847 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:56,847 862 | {return new OBVibrationData(*this);} 2021-07-15T21:49:56,847 | ^ 2021-07-15T21:49:56,847 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:49:56,848 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:49:56,848 | ^~~~~~~~ 2021-07-15T21:49:56,850 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:56,851 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:56,851 907 | {return new OBDOSData(*this);} 2021-07-15T21:49:56,851 | ^ 2021-07-15T21:49:56,851 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:49:56,852 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:49:56,852 | ^~~~~~~~ 2021-07-15T21:49:56,869 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:56,870 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:56,870 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:49:56,870 | ^ 2021-07-15T21:49:56,870 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:49:56,871 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:49:56,871 | ^~~~~~~~ 2021-07-15T21:49:56,875 In file included from include/openbabel/mol.h:52, 2021-07-15T21:49:56,875 from ./src/bond.cpp:22: 2021-07-15T21:49:56,875 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:49:56,876 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:49:56,876 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:49:56,876 | ^ 2021-07-15T21:49:56,876 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:49:56,877 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:49:56,877 | ^~~~~~~~ 2021-07-15T21:49:59,923 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:49:59,923 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bond.o /tmp/cc5qO8Tn.s 2021-07-15T21:49:59,928 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:50:00,157 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:50:00,157 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:50:00,158 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:00,159 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bondtyper.cpp -o build/temp.linux-armv7l-3.9/./src/bondtyper.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:50:00,169 Using built-in specs. 2021-07-15T21:50:00,170 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:50:00,171 Target: arm-linux-gnueabihf 2021-07-15T21:50:00,171 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:50:00,171 Thread model: posix 2021-07-15T21:50:00,171 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:50:00,171 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:50:00,172 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:00,172 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bondtyper.cpp -quiet -dumpbase bondtyper.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bondtyper.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqs5WOD.s 2021-07-15T21:50:00,184 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:00,185 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:00,185 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:00,185 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:50:00,185 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:50:00,186 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:50:00,186 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:50:00,186 ignoring duplicate directory "/usr/include/" 2021-07-15T21:50:00,186 as it is a non-system directory that duplicates a system directory 2021-07-15T21:50:00,186 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:50:00,186 #include "..." search starts here: 2021-07-15T21:50:00,187 #include <...> search starts here: 2021-07-15T21:50:00,187 /usr/include/eigen3 2021-07-15T21:50:00,187 include 2021-07-15T21:50:00,187 /usr/include/python3.9 2021-07-15T21:50:00,187 /usr/include/c++/10 2021-07-15T21:50:00,187 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:50:00,187 /usr/include/c++/10/backward 2021-07-15T21:50:00,187 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:50:00,188 /usr/local/include 2021-07-15T21:50:00,188 /usr/include/arm-linux-gnueabihf 2021-07-15T21:50:00,188 /usr/include 2021-07-15T21:50:00,188 End of search list. 2021-07-15T21:50:00,188 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:00,188 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:00,189 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:00,203 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:50:01,829 In file included from include/openbabel/atom.h:33, 2021-07-15T21:50:01,830 from include/openbabel/mol.h:43, 2021-07-15T21:50:01,830 from ./src/bondtyper.cpp:20: 2021-07-15T21:50:01,830 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:50:01,830 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:50:01,831 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:50:01,831 | ^ 2021-07-15T21:50:01,831 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:01,831 37 | # define UNUSED(x) x 2021-07-15T21:50:01,831 | ^ 2021-07-15T21:50:02,665 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:02,665 from ./src/bondtyper.cpp:20: 2021-07-15T21:50:02,665 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:02,665 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:02,666 862 | {return new OBVibrationData(*this);} 2021-07-15T21:50:02,666 | ^ 2021-07-15T21:50:02,666 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:50:02,666 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:50:02,667 | ^~~~~~~~ 2021-07-15T21:50:02,669 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:02,670 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:02,670 907 | {return new OBDOSData(*this);} 2021-07-15T21:50:02,670 | ^ 2021-07-15T21:50:02,670 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:50:02,671 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:50:02,671 | ^~~~~~~~ 2021-07-15T21:50:02,688 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:02,689 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:02,689 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:50:02,689 | ^ 2021-07-15T21:50:02,689 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:50:02,690 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:50:02,690 | ^~~~~~~~ 2021-07-15T21:50:02,694 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:02,694 from ./src/bondtyper.cpp:20: 2021-07-15T21:50:02,694 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:02,695 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:02,695 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:50:02,695 | ^ 2021-07-15T21:50:02,695 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:50:02,696 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:50:02,696 | ^~~~~~~~ 2021-07-15T21:50:06,271 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:06,271 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bondtyper.o /tmp/ccqs5WOD.s 2021-07-15T21:50:06,276 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:50:06,591 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:50:06,592 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:50:06,592 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:06,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/builder.cpp -o build/temp.linux-armv7l-3.9/./src/builder.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:50:06,605 Using built-in specs. 2021-07-15T21:50:06,606 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:50:06,607 Target: arm-linux-gnueabihf 2021-07-15T21:50:06,607 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:50:06,607 Thread model: posix 2021-07-15T21:50:06,607 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:50:06,607 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:50:06,608 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:06,608 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/builder.cpp -quiet -dumpbase builder.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/builder.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwsjlCg.s 2021-07-15T21:50:06,620 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:06,621 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:06,621 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:06,621 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:50:06,621 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:50:06,622 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:50:06,622 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:50:06,622 ignoring duplicate directory "/usr/include/" 2021-07-15T21:50:06,622 as it is a non-system directory that duplicates a system directory 2021-07-15T21:50:06,623 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:50:06,623 #include "..." search starts here: 2021-07-15T21:50:06,623 #include <...> search starts here: 2021-07-15T21:50:06,623 /usr/include/eigen3 2021-07-15T21:50:06,624 include 2021-07-15T21:50:06,624 /usr/include/python3.9 2021-07-15T21:50:06,624 /usr/include/c++/10 2021-07-15T21:50:06,624 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:50:06,625 /usr/include/c++/10/backward 2021-07-15T21:50:06,625 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:50:06,625 /usr/local/include 2021-07-15T21:50:06,625 /usr/include/arm-linux-gnueabihf 2021-07-15T21:50:06,626 /usr/include 2021-07-15T21:50:06,626 End of search list. 2021-07-15T21:50:06,626 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:06,626 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:06,627 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:06,645 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:50:07,509 ./src/builder.cpp:188:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,509 188 | // \ \ 2021-07-15T21:50:07,510 | ^ 2021-07-15T21:50:07,510 ./src/builder.cpp:190:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,510 190 | // \ 2021-07-15T21:50:07,510 | ^ 2021-07-15T21:50:07,511 ./src/builder.cpp:197:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,511 197 | // \ \ 2021-07-15T21:50:07,511 | ^ 2021-07-15T21:50:07,512 ./src/builder.cpp:199:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,512 199 | // \ 2021-07-15T21:50:07,512 | ^ 2021-07-15T21:50:07,513 ./src/builder.cpp:265:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,513 265 | // \ \ 2021-07-15T21:50:07,513 | ^ 2021-07-15T21:50:07,518 ./src/builder.cpp:1215:5: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,518 1215 | // / / v2 / \ 2021-07-15T21:50:07,518 | ^ 2021-07-15T21:50:07,520 ./src/builder.cpp:1324:9: warning: multi-line comment [-Wcomment] 2021-07-15T21:50:07,520 1324 | // / \ 2021-07-15T21:50:07,520 | ^ 2021-07-15T21:50:08,991 In file included from include/openbabel/builder.h:29, 2021-07-15T21:50:08,991 from ./src/builder.cpp:22: 2021-07-15T21:50:08,991 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:50:08,992 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:50:08,992 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:50:08,992 | ^ 2021-07-15T21:50:08,992 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:08,992 37 | # define UNUSED(x) x 2021-07-15T21:50:08,992 | ^ 2021-07-15T21:50:10,016 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:10,016 from include/openbabel/builder.h:30, 2021-07-15T21:50:10,017 from ./src/builder.cpp:22: 2021-07-15T21:50:10,017 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:10,017 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:10,017 862 | {return new OBVibrationData(*this);} 2021-07-15T21:50:10,018 | ^ 2021-07-15T21:50:10,018 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:50:10,018 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:50:10,018 | ^~~~~~~~ 2021-07-15T21:50:10,024 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:10,024 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:10,024 907 | {return new OBDOSData(*this);} 2021-07-15T21:50:10,024 | ^ 2021-07-15T21:50:10,025 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:50:10,025 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:50:10,025 | ^~~~~~~~ 2021-07-15T21:50:10,048 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:10,049 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:10,049 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:50:10,049 | ^ 2021-07-15T21:50:10,049 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:50:10,050 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:50:10,050 | ^~~~~~~~ 2021-07-15T21:50:10,057 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:10,057 from include/openbabel/builder.h:30, 2021-07-15T21:50:10,057 from ./src/builder.cpp:22: 2021-07-15T21:50:10,057 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:10,057 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:10,058 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:50:10,058 | ^ 2021-07-15T21:50:10,058 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:50:10,058 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:50:10,059 | ^~~~~~~~ 2021-07-15T21:50:10,445 In file included from include/openbabel/builder.h:29, 2021-07-15T21:50:10,445 from ./src/builder.cpp:22: 2021-07-15T21:50:10,446 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:50:10,446 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:50:10,446 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:50:10,446 | ^ 2021-07-15T21:50:10,446 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:10,446 37 | # define UNUSED(x) x 2021-07-15T21:50:10,447 | ^ 2021-07-15T21:50:10,448 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:50:10,448 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:50:10,448 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:50:10,448 | ^ 2021-07-15T21:50:10,449 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:10,449 37 | # define UNUSED(x) x 2021-07-15T21:50:10,449 | ^ 2021-07-15T21:50:20,213 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:50:20,214 from include/openbabel/builder.h:23, 2021-07-15T21:50:20,214 from ./src/builder.cpp:22: 2021-07-15T21:50:20,214 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:50:20,214 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:50:20,214 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:50:20,214 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:50:20,762 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:50:20,763 from include/openbabel/builder.h:23, 2021-07-15T21:50:20,763 from ./src/builder.cpp:22: 2021-07-15T21:50:20,763 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::OBBuilder::LoadFragments()’: 2021-07-15T21:50:20,763 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:50:20,763 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:50:20,763 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:50:23,668 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector, std::vector, std::vector)’: 2021-07-15T21:50:23,669 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:50:23,669 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:50:23,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:50:24,372 ./src/builder.cpp: In member function ‘bool OpenBabel::OBBuilder::Build(OpenBabel::OBMol&, bool)’: 2021-07-15T21:50:24,373 ./src/builder.cpp:1060:32: warning: ‘match_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:50:24,373 1060 | match_indices[0] = match_idx; 2021-07-15T21:50:25,745 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:25,746 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/builder.o /tmp/ccwsjlCg.s 2021-07-15T21:50:25,751 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:50:26,692 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:50:26,693 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:50:26,693 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:26,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/canon.cpp -o build/temp.linux-armv7l-3.9/./src/canon.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:50:26,707 Using built-in specs. 2021-07-15T21:50:26,709 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:50:26,709 Target: arm-linux-gnueabihf 2021-07-15T21:50:26,709 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:50:26,710 Thread model: posix 2021-07-15T21:50:26,710 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:50:26,710 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:50:26,712 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:26,715 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/canon.cpp -quiet -dumpbase canon.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/canon.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccW6x5wt.s 2021-07-15T21:50:26,727 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:26,728 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:26,728 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:26,730 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:50:26,731 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:50:26,731 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:50:26,731 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:50:26,732 ignoring duplicate directory "/usr/include/" 2021-07-15T21:50:26,732 as it is a non-system directory that duplicates a system directory 2021-07-15T21:50:26,732 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:50:26,733 #include "..." search starts here: 2021-07-15T21:50:26,733 #include <...> search starts here: 2021-07-15T21:50:26,733 /usr/include/eigen3 2021-07-15T21:50:26,733 include 2021-07-15T21:50:26,734 /usr/include/python3.9 2021-07-15T21:50:26,734 /usr/include/c++/10 2021-07-15T21:50:26,734 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:50:26,734 /usr/include/c++/10/backward 2021-07-15T21:50:26,735 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:50:26,735 /usr/local/include 2021-07-15T21:50:26,735 /usr/include/arm-linux-gnueabihf 2021-07-15T21:50:26,735 /usr/include 2021-07-15T21:50:26,735 End of search list. 2021-07-15T21:50:26,745 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:26,745 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:26,746 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:26,753 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:50:28,294 In file included from include/openbabel/stereo/stereo.h:27, 2021-07-15T21:50:28,294 from include/openbabel/graphsym.h:25, 2021-07-15T21:50:28,294 from ./src/canon.cpp:22: 2021-07-15T21:50:28,294 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:50:28,295 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:50:28,295 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:50:28,295 | ^ 2021-07-15T21:50:28,295 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:28,295 37 | # define UNUSED(x) x 2021-07-15T21:50:28,295 | ^ 2021-07-15T21:50:29,106 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:29,106 from include/openbabel/isomorphism.h:27, 2021-07-15T21:50:29,106 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:50:29,106 from include/openbabel/graphsym.h:25, 2021-07-15T21:50:29,106 from ./src/canon.cpp:22: 2021-07-15T21:50:29,106 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:29,107 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:29,107 862 | {return new OBVibrationData(*this);} 2021-07-15T21:50:29,107 | ^ 2021-07-15T21:50:29,107 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:50:29,107 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:50:29,108 | ^~~~~~~~ 2021-07-15T21:50:29,112 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:29,112 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:29,112 907 | {return new OBDOSData(*this);} 2021-07-15T21:50:29,112 | ^ 2021-07-15T21:50:29,113 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:50:29,113 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:50:29,113 | ^~~~~~~~ 2021-07-15T21:50:29,132 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:29,132 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:29,132 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:50:29,132 | ^ 2021-07-15T21:50:29,133 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:50:29,133 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:50:29,133 | ^~~~~~~~ 2021-07-15T21:50:29,139 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:29,139 from include/openbabel/isomorphism.h:27, 2021-07-15T21:50:29,139 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:50:29,139 from include/openbabel/graphsym.h:25, 2021-07-15T21:50:29,139 from ./src/canon.cpp:22: 2021-07-15T21:50:29,139 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:29,140 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:29,140 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:50:29,140 | ^ 2021-07-15T21:50:29,140 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:50:29,140 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:50:29,141 | ^~~~~~~~ 2021-07-15T21:50:29,540 ./src/canon.cpp: In constructor ‘OpenBabel::CanonicalLabelsImpl::State::State(const std::vector&, const OpenBabel::OBBitVec&, std::vector&, std::vector&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBBitVec&, bool)’: 2021-07-15T21:50:29,540 ./src/canon.cpp:708:34: warning: ‘OpenBabel::CanonicalLabelsImpl::State::stereoCenters’ will be initialized after [-Wreorder] 2021-07-15T21:50:29,540 708 | std::vector &stereoCenters; 2021-07-15T21:50:29,541 | ^~~~~~~~~~~~~ 2021-07-15T21:50:29,541 ./src/canon.cpp:702:18: warning: ‘const bool OpenBabel::CanonicalLabelsImpl::State::onlyOne’ [-Wreorder] 2021-07-15T21:50:29,541 702 | const bool onlyOne; 2021-07-15T21:50:29,541 | ^~~~~~~ 2021-07-15T21:50:29,542 ./src/canon.cpp:683:7: warning: when initialized here [-Wreorder] 2021-07-15T21:50:29,542 683 | State(const std::vector &_symmetry_classes, 2021-07-15T21:50:29,542 | ^~~~~ 2021-07-15T21:50:29,648 ./src/canon.cpp: In static member function ‘static void OpenBabel::CanonicalLabelsImpl::UpdateMcr(OpenBabel::OBBitVec&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBMol*, const std::vector&)’: 2021-07-15T21:50:29,649 ./src/canon.cpp:1134:65: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T21:50:29,649 1134 | static void UpdateMcr(OBBitVec &mcr, Orbits &orbits, OBMol *mol, const std::vector &bestLabels) 2021-07-15T21:50:29,649 | ~~~~~~~^~~ 2021-07-15T21:50:48,525 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:48,526 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/canon.o /tmp/ccW6x5wt.s 2021-07-15T21:50:48,534 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:50:50,490 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:50:50,490 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:50:50,491 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:50,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chains.cpp -o build/temp.linux-armv7l-3.9/./src/chains.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:50:50,509 Using built-in specs. 2021-07-15T21:50:50,511 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:50:50,511 Target: arm-linux-gnueabihf 2021-07-15T21:50:50,511 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:50:50,512 Thread model: posix 2021-07-15T21:50:50,512 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:50:50,512 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:50:50,513 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:50:50,517 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chains.cpp -quiet -dumpbase chains.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chains.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchQWycU.s 2021-07-15T21:50:50,529 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:50,530 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:50,530 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:50,531 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:50:50,532 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:50:50,532 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:50:50,532 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:50:50,532 ignoring duplicate directory "/usr/include/" 2021-07-15T21:50:50,533 as it is a non-system directory that duplicates a system directory 2021-07-15T21:50:50,533 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:50:50,533 #include "..." search starts here: 2021-07-15T21:50:50,533 #include <...> search starts here: 2021-07-15T21:50:50,534 /usr/include/eigen3 2021-07-15T21:50:50,534 include 2021-07-15T21:50:50,534 /usr/include/python3.9 2021-07-15T21:50:50,534 /usr/include/c++/10 2021-07-15T21:50:50,534 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:50:50,535 /usr/include/c++/10/backward 2021-07-15T21:50:50,535 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:50:50,536 /usr/local/include 2021-07-15T21:50:50,536 /usr/include/arm-linux-gnueabihf 2021-07-15T21:50:50,536 /usr/include 2021-07-15T21:50:50,536 End of search list. 2021-07-15T21:50:50,545 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:50:50,545 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:50:50,546 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:50:50,552 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:50:52,124 In file included from include/openbabel/atom.h:33, 2021-07-15T21:50:52,124 from include/openbabel/mol.h:43, 2021-07-15T21:50:52,124 from ./src/chains.cpp:33: 2021-07-15T21:50:52,124 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:50:52,124 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:50:52,125 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:50:52,125 | ^ 2021-07-15T21:50:52,125 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:50:52,125 37 | # define UNUSED(x) x 2021-07-15T21:50:52,125 | ^ 2021-07-15T21:50:53,112 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:53,113 from ./src/chains.cpp:33: 2021-07-15T21:50:53,113 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:53,113 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:53,113 862 | {return new OBVibrationData(*this);} 2021-07-15T21:50:53,113 | ^ 2021-07-15T21:50:53,114 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:50:53,114 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:50:53,114 | ^~~~~~~~ 2021-07-15T21:50:53,120 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:53,120 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:53,120 907 | {return new OBDOSData(*this);} 2021-07-15T21:50:53,120 | ^ 2021-07-15T21:50:53,121 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:50:53,121 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:50:53,121 | ^~~~~~~~ 2021-07-15T21:50:53,145 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:53,145 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:53,145 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:50:53,146 | ^ 2021-07-15T21:50:53,146 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:50:53,146 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:50:53,146 | ^~~~~~~~ 2021-07-15T21:50:53,153 In file included from include/openbabel/mol.h:52, 2021-07-15T21:50:53,154 from ./src/chains.cpp:33: 2021-07-15T21:50:53,154 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:50:53,154 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:50:53,154 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:50:53,154 | ^ 2021-07-15T21:50:53,155 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:50:53,155 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:50:53,155 | ^~~~~~~~ 2021-07-15T21:50:58,829 ./src/chains.cpp: In member function ‘void OpenBabel::OBChainsParser::ConstrainBackbone(OpenBabel::OBMol&, OpenBabel::Template*, int)’: 2021-07-15T21:50:58,829 ./src/chains.cpp:1271:51: warning: ‘nd’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:50:58,829 1271 | result = Match4Constraints(pep,na,nb,nc,nd); 2021-07-15T21:50:58,829 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:50:58,830 ./src/chains.cpp:1271:51: warning: ‘nc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:50:58,831 ./src/chains.cpp:1271:51: warning: ‘nb’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:50:58,831 ./src/chains.cpp:1271:51: warning: ‘na’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:51:03,599 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:03,599 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chains.o /tmp/cchQWycU.s 2021-07-15T21:51:03,604 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:51:04,211 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:51:04,211 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:51:04,211 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:04,215 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chargemodel.cpp -o build/temp.linux-armv7l-3.9/./src/chargemodel.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:51:04,223 Using built-in specs. 2021-07-15T21:51:04,225 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:51:04,225 Target: arm-linux-gnueabihf 2021-07-15T21:51:04,226 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:51:04,226 Thread model: posix 2021-07-15T21:51:04,226 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:51:04,227 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:51:04,227 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:04,227 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chargemodel.cpp -quiet -dumpbase chargemodel.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chargemodel.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNqZqqn.s 2021-07-15T21:51:04,239 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:04,240 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:04,240 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:04,241 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:51:04,241 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:51:04,241 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:51:04,242 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:51:04,242 ignoring duplicate directory "/usr/include/" 2021-07-15T21:51:04,242 as it is a non-system directory that duplicates a system directory 2021-07-15T21:51:04,242 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:51:04,243 #include "..." search starts here: 2021-07-15T21:51:04,243 #include <...> search starts here: 2021-07-15T21:51:04,243 /usr/include/eigen3 2021-07-15T21:51:04,243 include 2021-07-15T21:51:04,243 /usr/include/python3.9 2021-07-15T21:51:04,244 /usr/include/c++/10 2021-07-15T21:51:04,244 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:51:04,244 /usr/include/c++/10/backward 2021-07-15T21:51:04,244 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:51:04,244 /usr/local/include 2021-07-15T21:51:04,245 /usr/include/arm-linux-gnueabihf 2021-07-15T21:51:04,245 /usr/include 2021-07-15T21:51:04,245 End of search list. 2021-07-15T21:51:04,245 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:04,246 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:04,246 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:04,257 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:51:05,758 In file included from ./src/chargemodel.cpp:21: 2021-07-15T21:51:05,758 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:51:05,758 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:51:05,759 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:51:05,759 | ~~~~~~~^ 2021-07-15T21:51:05,759 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:51:05,760 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:51:05,760 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:51:05,760 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:51:05,882 In file included from include/openbabel/atom.h:33, 2021-07-15T21:51:05,882 from include/openbabel/mol.h:43, 2021-07-15T21:51:05,882 from ./src/chargemodel.cpp:22: 2021-07-15T21:51:05,883 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:51:05,883 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:51:05,883 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:51:05,884 | ^ 2021-07-15T21:51:05,884 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:51:05,884 37 | # define UNUSED(x) x 2021-07-15T21:51:05,884 | ^ 2021-07-15T21:51:06,648 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:06,649 from ./src/chargemodel.cpp:22: 2021-07-15T21:51:06,649 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:06,649 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:06,650 862 | {return new OBVibrationData(*this);} 2021-07-15T21:51:06,650 | ^ 2021-07-15T21:51:06,650 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:51:06,651 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:51:06,651 | ^~~~~~~~ 2021-07-15T21:51:06,653 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:06,653 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:06,654 907 | {return new OBDOSData(*this);} 2021-07-15T21:51:06,654 | ^ 2021-07-15T21:51:06,654 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:51:06,655 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:51:06,655 | ^~~~~~~~ 2021-07-15T21:51:06,672 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:06,673 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:06,673 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:51:06,673 | ^ 2021-07-15T21:51:06,673 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:51:06,674 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:51:06,674 | ^~~~~~~~ 2021-07-15T21:51:06,678 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:06,678 from ./src/chargemodel.cpp:22: 2021-07-15T21:51:06,678 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:06,679 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:06,679 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:51:06,679 | ^ 2021-07-15T21:51:06,680 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:51:06,680 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:51:06,680 | ^~~~~~~~ 2021-07-15T21:51:08,378 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:51:08,379 from include/openbabel/plugin.h:25, 2021-07-15T21:51:08,379 from include/openbabel/chargemodel.h:24, 2021-07-15T21:51:08,379 from ./src/chargemodel.cpp:21: 2021-07-15T21:51:08,379 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:51:08,380 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:51:08,380 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:51:08,380 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:08,422 /usr/include/c++/10/bits/vector.tcc: In member function ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’: 2021-07-15T21:51:08,422 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:51:08,422 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:51:08,423 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:08,423 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:51:08,423 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:51:08,423 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:08,512 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:08,512 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chargemodel.o /tmp/ccNqZqqn.s 2021-07-15T21:51:08,531 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:51:08,596 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:51:08,597 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:51:08,597 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:08,601 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/eem.cpp -o build/temp.linux-armv7l-3.9/./src/charges/eem.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:51:08,607 Using built-in specs. 2021-07-15T21:51:08,608 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:51:08,608 Target: arm-linux-gnueabihf 2021-07-15T21:51:08,609 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:51:08,609 Thread model: posix 2021-07-15T21:51:08,609 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:51:08,610 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:51:08,611 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:08,613 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/eem.cpp -quiet -dumpbase eem.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/eem.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccN83llB.s 2021-07-15T21:51:08,626 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:08,626 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:08,627 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:08,627 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:51:08,627 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:51:08,627 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:51:08,627 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:51:08,628 ignoring duplicate directory "/usr/include/" 2021-07-15T21:51:08,628 as it is a non-system directory that duplicates a system directory 2021-07-15T21:51:08,628 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:51:08,628 #include "..." search starts here: 2021-07-15T21:51:08,628 #include <...> search starts here: 2021-07-15T21:51:08,629 /usr/include/eigen3 2021-07-15T21:51:08,629 include 2021-07-15T21:51:08,629 /usr/include/python3.9 2021-07-15T21:51:08,629 /usr/include/c++/10 2021-07-15T21:51:08,629 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:51:08,629 /usr/include/c++/10/backward 2021-07-15T21:51:08,629 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:51:08,630 /usr/local/include 2021-07-15T21:51:08,630 /usr/include/arm-linux-gnueabihf 2021-07-15T21:51:08,630 /usr/include 2021-07-15T21:51:08,630 End of search list. 2021-07-15T21:51:08,630 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:08,631 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:08,631 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:08,646 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:51:10,185 In file included from ./src/charges/eem.cpp:23: 2021-07-15T21:51:10,185 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:51:10,185 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:51:10,185 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:51:10,186 | ~~~~~~~^ 2021-07-15T21:51:10,186 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:51:10,186 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:51:10,186 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:51:10,187 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:51:10,309 In file included from include/openbabel/atom.h:33, 2021-07-15T21:51:10,310 from include/openbabel/mol.h:43, 2021-07-15T21:51:10,310 from ./src/charges/eem.cpp:24: 2021-07-15T21:51:10,310 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:51:10,310 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:51:10,310 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:51:10,310 | ^ 2021-07-15T21:51:10,310 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:51:10,311 37 | # define UNUSED(x) x 2021-07-15T21:51:10,311 | ^ 2021-07-15T21:51:11,067 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:11,067 from ./src/charges/eem.cpp:24: 2021-07-15T21:51:11,067 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:11,067 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:11,067 862 | {return new OBVibrationData(*this);} 2021-07-15T21:51:11,067 | ^ 2021-07-15T21:51:11,068 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:51:11,068 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:51:11,068 | ^~~~~~~~ 2021-07-15T21:51:11,072 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:11,073 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:11,073 907 | {return new OBDOSData(*this);} 2021-07-15T21:51:11,073 | ^ 2021-07-15T21:51:11,073 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:51:11,074 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:51:11,074 | ^~~~~~~~ 2021-07-15T21:51:11,092 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:11,093 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:11,093 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:51:11,093 | ^ 2021-07-15T21:51:11,093 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:51:11,094 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:51:11,094 | ^~~~~~~~ 2021-07-15T21:51:11,099 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:11,099 from ./src/charges/eem.cpp:24: 2021-07-15T21:51:11,100 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:11,100 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:11,100 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:51:11,100 | ^ 2021-07-15T21:51:11,100 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:51:11,101 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:51:11,101 | ^~~~~~~~ 2021-07-15T21:51:13,913 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:51:13,914 from ./src/charges/eem.cpp:20: 2021-07-15T21:51:13,914 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::EEMParameter&}; _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’: 2021-07-15T21:51:13,914 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:51:13,914 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:51:13,914 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:14,062 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:51:14,062 from ./src/charges/eem.cpp:20: 2021-07-15T21:51:14,062 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::EEMCharges::_loadParameters()’: 2021-07-15T21:51:14,062 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:51:14,062 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:51:14,063 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:51:15,434 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:15,434 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/eem.o /tmp/ccN83llB.s 2021-07-15T21:51:15,441 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:51:15,823 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:51:15,824 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:51:15,824 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:15,828 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/eqeq.cpp -o build/temp.linux-armv7l-3.9/./src/charges/eqeq.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:51:15,836 Using built-in specs. 2021-07-15T21:51:15,837 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:51:15,837 Target: arm-linux-gnueabihf 2021-07-15T21:51:15,838 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:51:15,838 Thread model: posix 2021-07-15T21:51:15,838 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:51:15,838 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:51:15,839 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:15,839 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/eqeq.cpp -quiet -dumpbase eqeq.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/eqeq.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccICjFSN.s 2021-07-15T21:51:15,865 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:15,865 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:15,866 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:15,866 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:51:15,866 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:51:15,866 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:51:15,867 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:51:15,867 ignoring duplicate directory "/usr/include/" 2021-07-15T21:51:15,867 as it is a non-system directory that duplicates a system directory 2021-07-15T21:51:15,867 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:51:15,868 #include "..." search starts here: 2021-07-15T21:51:15,868 #include <...> search starts here: 2021-07-15T21:51:15,868 /usr/include/eigen3 2021-07-15T21:51:15,868 include 2021-07-15T21:51:15,868 /usr/include/python3.9 2021-07-15T21:51:15,869 /usr/include/c++/10 2021-07-15T21:51:15,869 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:51:15,869 /usr/include/c++/10/backward 2021-07-15T21:51:15,869 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:51:15,869 /usr/local/include 2021-07-15T21:51:15,869 /usr/include/arm-linux-gnueabihf 2021-07-15T21:51:15,870 /usr/include 2021-07-15T21:51:15,870 End of search list. 2021-07-15T21:51:15,870 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:15,870 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:15,870 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:15,883 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:51:17,801 In file included from include/charges/eqeq.h:22, 2021-07-15T21:51:17,801 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:17,801 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:51:17,802 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:51:17,802 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:51:17,802 | ~~~~~~~^ 2021-07-15T21:51:17,803 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:51:17,803 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:51:17,803 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:51:17,803 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:51:17,924 In file included from include/openbabel/atom.h:33, 2021-07-15T21:51:17,925 from include/openbabel/mol.h:43, 2021-07-15T21:51:17,925 from include/charges/eqeq.h:23, 2021-07-15T21:51:17,925 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:17,925 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:51:17,925 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:51:17,926 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:51:17,926 | ^ 2021-07-15T21:51:17,926 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:51:17,926 37 | # define UNUSED(x) x 2021-07-15T21:51:17,926 | ^ 2021-07-15T21:51:18,685 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:18,685 from include/charges/eqeq.h:23, 2021-07-15T21:51:18,685 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:18,685 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:18,685 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:18,685 862 | {return new OBVibrationData(*this);} 2021-07-15T21:51:18,686 | ^ 2021-07-15T21:51:18,695 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:51:18,695 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:51:18,695 | ^~~~~~~~ 2021-07-15T21:51:18,696 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:18,696 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:18,696 907 | {return new OBDOSData(*this);} 2021-07-15T21:51:18,696 | ^ 2021-07-15T21:51:18,696 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:51:18,697 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:51:18,697 | ^~~~~~~~ 2021-07-15T21:51:18,715 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:18,715 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:18,715 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:51:18,716 | ^ 2021-07-15T21:51:18,716 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:51:18,716 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:51:18,716 | ^~~~~~~~ 2021-07-15T21:51:18,725 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:18,725 from include/charges/eqeq.h:23, 2021-07-15T21:51:18,725 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:18,726 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:18,726 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:18,726 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:51:18,726 | ^ 2021-07-15T21:51:18,726 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:51:18,726 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:51:18,727 | ^~~~~~~~ 2021-07-15T21:51:20,440 In file included from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:20,440 include/charges/eqeq.h: At global scope: 2021-07-15T21:51:20,441 include/charges/eqeq.h:66:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:51:20,441 66 | }; //namespace OpenBabel 2021-07-15T21:51:20,441 | ^ 2021-07-15T21:51:45,708 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:51:45,709 from include/openbabel/plugin.h:25, 2021-07-15T21:51:45,709 from include/openbabel/chargemodel.h:24, 2021-07-15T21:51:45,709 from include/charges/eqeq.h:22, 2021-07-15T21:51:45,709 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:51:45,710 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:51:45,710 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:51:45,710 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:51:45,710 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:48,699 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:51:48,700 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:51:48,700 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:51:48,700 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:48,701 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:51:48,701 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:51:48,701 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:51:51,577 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:51,578 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/eqeq.o /tmp/ccICjFSN.s 2021-07-15T21:51:51,585 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:51:54,160 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:51:54,160 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:51:54,160 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:54,176 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/fromfile.cpp -o build/temp.linux-armv7l-3.9/./src/charges/fromfile.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:51:54,187 Using built-in specs. 2021-07-15T21:51:54,189 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:51:54,189 Target: arm-linux-gnueabihf 2021-07-15T21:51:54,189 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:51:54,190 Thread model: posix 2021-07-15T21:51:54,190 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:51:54,190 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:51:54,191 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:51:54,194 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/fromfile.cpp -quiet -dumpbase fromfile.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/fromfile.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwl8CI3.s 2021-07-15T21:51:54,210 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:54,210 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:54,211 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:54,213 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:51:54,214 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:51:54,214 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:51:54,215 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:51:54,215 ignoring duplicate directory "/usr/include/" 2021-07-15T21:51:54,215 as it is a non-system directory that duplicates a system directory 2021-07-15T21:51:54,216 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:51:54,216 #include "..." search starts here: 2021-07-15T21:51:54,217 #include <...> search starts here: 2021-07-15T21:51:54,217 /usr/include/eigen3 2021-07-15T21:51:54,217 include 2021-07-15T21:51:54,217 /usr/include/python3.9 2021-07-15T21:51:54,218 /usr/include/c++/10 2021-07-15T21:51:54,218 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:51:54,219 /usr/include/c++/10/backward 2021-07-15T21:51:54,219 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:51:54,219 /usr/local/include 2021-07-15T21:51:54,219 /usr/include/arm-linux-gnueabihf 2021-07-15T21:51:54,219 /usr/include 2021-07-15T21:51:54,220 End of search list. 2021-07-15T21:51:54,225 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:51:54,225 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:51:54,226 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:51:54,238 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:51:56,081 In file included from ./src/charges/fromfile.cpp:21: 2021-07-15T21:51:56,082 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:51:56,082 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:51:56,082 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:51:56,082 | ~~~~~~~^ 2021-07-15T21:51:56,083 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:51:56,083 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:51:56,083 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:51:56,083 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:51:56,235 In file included from include/openbabel/atom.h:33, 2021-07-15T21:51:56,235 from include/openbabel/mol.h:43, 2021-07-15T21:51:56,235 from ./src/charges/fromfile.cpp:22: 2021-07-15T21:51:56,236 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:51:56,236 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:51:56,236 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:51:56,236 | ^ 2021-07-15T21:51:56,236 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:51:56,237 37 | # define UNUSED(x) x 2021-07-15T21:51:56,237 | ^ 2021-07-15T21:51:57,180 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:57,181 from ./src/charges/fromfile.cpp:22: 2021-07-15T21:51:57,181 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:57,181 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:57,181 862 | {return new OBVibrationData(*this);} 2021-07-15T21:51:57,181 | ^ 2021-07-15T21:51:57,182 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:51:57,182 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:51:57,182 | ^~~~~~~~ 2021-07-15T21:51:57,186 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:57,186 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:57,186 907 | {return new OBDOSData(*this);} 2021-07-15T21:51:57,186 | ^ 2021-07-15T21:51:57,186 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:51:57,187 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:51:57,187 | ^~~~~~~~ 2021-07-15T21:51:57,208 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:57,209 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:57,209 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:51:57,209 | ^ 2021-07-15T21:51:57,209 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:51:57,210 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:51:57,210 | ^~~~~~~~ 2021-07-15T21:51:57,215 In file included from include/openbabel/mol.h:52, 2021-07-15T21:51:57,216 from ./src/charges/fromfile.cpp:22: 2021-07-15T21:51:57,216 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:51:57,216 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:51:57,216 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:51:57,216 | ^ 2021-07-15T21:51:57,217 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:51:57,217 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:51:57,217 | ^~~~~~~~ 2021-07-15T21:51:57,709 ./src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:51:57,709 ./src/charges/fromfile.cpp:96:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:51:57,709 96 | for ( int i = 1; i <= mol.NumAtoms(); i++) 2021-07-15T21:51:57,709 | ~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:52:01,347 In file included from /usr/include/c++/10/map:60, 2021-07-15T21:52:01,347 from include/openbabel/plugin.h:26, 2021-07-15T21:52:01,348 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:01,348 from ./src/charges/fromfile.cpp:21: 2021-07-15T21:52:01,348 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T21:52:01,348 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T21:52:01,349 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T21:52:01,349 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,253 In file included from /usr/include/c++/10/map:61, 2021-07-15T21:52:02,253 from include/openbabel/plugin.h:26, 2021-07-15T21:52:02,254 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:02,254 from ./src/charges/fromfile.cpp:21: 2021-07-15T21:52:02,254 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:52:02,255 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T21:52:02,255 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T21:52:02,255 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,255 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T21:52:02,256 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,256 522 | std::tuple<>()); 2021-07-15T21:52:02,256 | ~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,257 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T21:52:02,257 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T21:52:02,257 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,258 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T21:52:02,258 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,258 522 | std::tuple<>()); 2021-07-15T21:52:02,258 | ~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,259 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T21:52:02,259 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T21:52:02,260 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,260 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T21:52:02,260 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:02,260 522 | std::tuple<>()); 2021-07-15T21:52:02,261 | ~~~~~~~~~~~~~~~ 2021-07-15T21:52:03,374 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:03,375 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/fromfile.o /tmp/ccwl8CI3.s 2021-07-15T21:52:03,380 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:52:03,776 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:52:03,777 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:52:03,777 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:03,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/gasteiger.cpp -o build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:52:03,790 Using built-in specs. 2021-07-15T21:52:03,791 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:52:03,791 Target: arm-linux-gnueabihf 2021-07-15T21:52:03,791 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:52:03,792 Thread model: posix 2021-07-15T21:52:03,792 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:52:03,792 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:52:03,792 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:03,792 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/gasteiger.cpp -quiet -dumpbase gasteiger.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc5xufaQ.s 2021-07-15T21:52:03,803 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:03,803 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:03,804 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:03,804 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:52:03,804 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:52:03,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:52:03,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:52:03,805 ignoring duplicate directory "/usr/include/" 2021-07-15T21:52:03,805 as it is a non-system directory that duplicates a system directory 2021-07-15T21:52:03,805 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:52:03,805 #include "..." search starts here: 2021-07-15T21:52:03,805 #include <...> search starts here: 2021-07-15T21:52:03,806 /usr/include/eigen3 2021-07-15T21:52:03,806 include 2021-07-15T21:52:03,806 /usr/include/python3.9 2021-07-15T21:52:03,806 /usr/include/c++/10 2021-07-15T21:52:03,806 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:52:03,806 /usr/include/c++/10/backward 2021-07-15T21:52:03,807 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:52:03,807 /usr/local/include 2021-07-15T21:52:03,807 /usr/include/arm-linux-gnueabihf 2021-07-15T21:52:03,807 /usr/include 2021-07-15T21:52:03,807 End of search list. 2021-07-15T21:52:03,807 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:03,808 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:03,808 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:03,821 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:52:05,318 In file included from ./src/charges/gasteiger.cpp:20: 2021-07-15T21:52:05,318 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:52:05,318 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:52:05,319 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:52:05,319 | ~~~~~~~^ 2021-07-15T21:52:05,319 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:52:05,319 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:52:05,320 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:52:05,320 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:52:05,442 In file included from include/openbabel/atom.h:33, 2021-07-15T21:52:05,442 from include/openbabel/mol.h:43, 2021-07-15T21:52:05,442 from ./src/charges/gasteiger.cpp:21: 2021-07-15T21:52:05,442 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:52:05,443 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:52:05,443 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:52:05,443 | ^ 2021-07-15T21:52:05,443 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:05,444 37 | # define UNUSED(x) x 2021-07-15T21:52:05,444 | ^ 2021-07-15T21:52:06,205 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:06,205 from ./src/charges/gasteiger.cpp:21: 2021-07-15T21:52:06,205 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:06,205 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:06,206 862 | {return new OBVibrationData(*this);} 2021-07-15T21:52:06,206 | ^ 2021-07-15T21:52:06,206 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:52:06,206 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:52:06,207 | ^~~~~~~~ 2021-07-15T21:52:06,209 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:06,210 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:06,210 907 | {return new OBDOSData(*this);} 2021-07-15T21:52:06,210 | ^ 2021-07-15T21:52:06,210 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:52:06,211 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:52:06,211 | ^~~~~~~~ 2021-07-15T21:52:06,228 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:06,229 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:06,229 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:52:06,229 | ^ 2021-07-15T21:52:06,229 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:52:06,230 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:52:06,230 | ^~~~~~~~ 2021-07-15T21:52:06,234 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:06,234 from ./src/charges/gasteiger.cpp:21: 2021-07-15T21:52:06,234 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:06,235 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:06,235 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:52:06,235 | ^ 2021-07-15T21:52:06,236 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:52:06,236 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:52:06,236 | ^~~~~~~~ 2021-07-15T21:52:08,647 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:08,648 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o /tmp/cc5xufaQ.s 2021-07-15T21:52:08,654 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:52:08,828 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:52:08,828 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:52:08,828 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:08,832 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/mmff94.cpp -o build/temp.linux-armv7l-3.9/./src/charges/mmff94.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:52:08,838 Using built-in specs. 2021-07-15T21:52:08,839 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:52:08,840 Target: arm-linux-gnueabihf 2021-07-15T21:52:08,840 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:52:08,840 Thread model: posix 2021-07-15T21:52:08,841 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:52:08,841 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:52:08,841 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:08,841 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/mmff94.cpp -quiet -dumpbase mmff94.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/mmff94.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHo0y71.s 2021-07-15T21:52:08,857 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:08,858 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:08,858 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:08,859 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:52:08,859 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:52:08,859 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:52:08,859 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:52:08,860 ignoring duplicate directory "/usr/include/" 2021-07-15T21:52:08,860 as it is a non-system directory that duplicates a system directory 2021-07-15T21:52:08,860 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:52:08,860 #include "..." search starts here: 2021-07-15T21:52:08,860 #include <...> search starts here: 2021-07-15T21:52:08,861 /usr/include/eigen3 2021-07-15T21:52:08,861 include 2021-07-15T21:52:08,861 /usr/include/python3.9 2021-07-15T21:52:08,861 /usr/include/c++/10 2021-07-15T21:52:08,861 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:52:08,861 /usr/include/c++/10/backward 2021-07-15T21:52:08,861 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:52:08,862 /usr/local/include 2021-07-15T21:52:08,862 /usr/include/arm-linux-gnueabihf 2021-07-15T21:52:08,862 /usr/include 2021-07-15T21:52:08,862 End of search list. 2021-07-15T21:52:08,862 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:08,862 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:08,863 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:08,879 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:52:10,731 In file included from ./src/charges/mmff94.cpp:20: 2021-07-15T21:52:10,731 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:52:10,731 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:52:10,732 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:52:10,732 | ~~~~~~~^ 2021-07-15T21:52:10,732 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:52:10,732 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:52:10,732 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:52:10,733 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:52:10,885 In file included from include/openbabel/atom.h:33, 2021-07-15T21:52:10,885 from include/openbabel/mol.h:43, 2021-07-15T21:52:10,886 from ./src/charges/mmff94.cpp:21: 2021-07-15T21:52:10,886 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:52:10,886 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:52:10,886 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:52:10,887 | ^ 2021-07-15T21:52:10,887 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:10,887 37 | # define UNUSED(x) x 2021-07-15T21:52:10,887 | ^ 2021-07-15T21:52:11,722 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:11,723 from ./src/charges/mmff94.cpp:21: 2021-07-15T21:52:11,723 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:11,723 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:11,723 862 | {return new OBVibrationData(*this);} 2021-07-15T21:52:11,724 | ^ 2021-07-15T21:52:11,724 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:52:11,724 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:52:11,724 | ^~~~~~~~ 2021-07-15T21:52:11,727 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:11,727 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:11,728 907 | {return new OBDOSData(*this);} 2021-07-15T21:52:11,728 | ^ 2021-07-15T21:52:11,728 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:52:11,728 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:52:11,728 | ^~~~~~~~ 2021-07-15T21:52:11,746 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:11,746 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:11,747 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:52:11,747 | ^ 2021-07-15T21:52:11,747 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:52:11,747 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:52:11,747 | ^~~~~~~~ 2021-07-15T21:52:11,752 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:11,752 from ./src/charges/mmff94.cpp:21: 2021-07-15T21:52:11,752 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:11,752 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:11,752 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:52:11,753 | ^ 2021-07-15T21:52:11,753 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:52:11,753 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:52:11,753 | ^~~~~~~~ 2021-07-15T21:52:12,024 In file included from include/openbabel/atom.h:33, 2021-07-15T21:52:12,024 from include/openbabel/mol.h:43, 2021-07-15T21:52:12,024 from ./src/charges/mmff94.cpp:21: 2021-07-15T21:52:12,025 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:52:12,025 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,025 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,025 | ^ 2021-07-15T21:52:12,026 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,026 37 | # define UNUSED(x) x 2021-07-15T21:52:12,026 | ^ 2021-07-15T21:52:12,026 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:52:12,027 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,027 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,027 | ^ 2021-07-15T21:52:12,027 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,028 37 | # define UNUSED(x) x 2021-07-15T21:52:12,028 | ^ 2021-07-15T21:52:12,028 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:52:12,028 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,028 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,029 | ^ 2021-07-15T21:52:12,029 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,029 37 | # define UNUSED(x) x 2021-07-15T21:52:12,029 | ^ 2021-07-15T21:52:12,029 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:52:12,030 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,030 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,030 | ^ 2021-07-15T21:52:12,030 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,030 37 | # define UNUSED(x) x 2021-07-15T21:52:12,031 | ^ 2021-07-15T21:52:12,031 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:52:12,031 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,031 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,032 | ^ 2021-07-15T21:52:12,032 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,032 37 | # define UNUSED(x) x 2021-07-15T21:52:12,032 | ^ 2021-07-15T21:52:12,032 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:52:12,032 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,033 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,033 | ^ 2021-07-15T21:52:12,033 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,033 37 | # define UNUSED(x) x 2021-07-15T21:52:12,034 | ^ 2021-07-15T21:52:12,034 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:52:12,034 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,034 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,035 | ^ 2021-07-15T21:52:12,035 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,035 37 | # define UNUSED(x) x 2021-07-15T21:52:12,035 | ^ 2021-07-15T21:52:12,035 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:52:12,036 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:52:12,036 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:52:12,036 | ^ 2021-07-15T21:52:12,036 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:12,037 37 | # define UNUSED(x) x 2021-07-15T21:52:12,037 | ^ 2021-07-15T21:52:14,390 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:52:14,391 from include/openbabel/plugin.h:25, 2021-07-15T21:52:14,391 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:14,391 from ./src/charges/mmff94.cpp:20: 2021-07-15T21:52:14,391 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:52:14,392 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:52:14,392 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:52:14,392 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:14,451 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:52:14,452 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:52:14,452 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:52:14,452 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:14,452 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:52:14,453 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:52:14,453 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:14,673 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:14,673 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/mmff94.o /tmp/ccHo0y71.s 2021-07-15T21:52:14,679 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:52:14,884 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:52:14,884 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:52:14,884 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:14,889 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/none.cpp -o build/temp.linux-armv7l-3.9/./src/charges/none.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:52:14,895 Using built-in specs. 2021-07-15T21:52:14,896 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:52:14,896 Target: arm-linux-gnueabihf 2021-07-15T21:52:14,897 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:52:14,897 Thread model: posix 2021-07-15T21:52:14,897 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:52:14,898 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:52:14,899 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:14,902 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/none.cpp -quiet -dumpbase none.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/none.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccDaSXPh.s 2021-07-15T21:52:14,915 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:14,916 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:14,916 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:14,917 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:52:14,918 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:52:14,918 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:52:14,918 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:52:14,919 ignoring duplicate directory "/usr/include/" 2021-07-15T21:52:14,919 as it is a non-system directory that duplicates a system directory 2021-07-15T21:52:14,919 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:52:14,919 #include "..." search starts here: 2021-07-15T21:52:14,920 #include <...> search starts here: 2021-07-15T21:52:14,920 /usr/include/eigen3 2021-07-15T21:52:14,920 include 2021-07-15T21:52:14,920 /usr/include/python3.9 2021-07-15T21:52:14,921 /usr/include/c++/10 2021-07-15T21:52:14,921 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:52:14,921 /usr/include/c++/10/backward 2021-07-15T21:52:14,921 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:52:14,921 /usr/local/include 2021-07-15T21:52:14,921 /usr/include/arm-linux-gnueabihf 2021-07-15T21:52:14,922 /usr/include 2021-07-15T21:52:14,922 End of search list. 2021-07-15T21:52:14,925 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:14,925 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:14,926 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:14,938 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:52:16,432 In file included from ./src/charges/none.cpp:21: 2021-07-15T21:52:16,433 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:52:16,433 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:52:16,433 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:52:16,433 | ~~~~~~~^ 2021-07-15T21:52:16,434 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:52:16,434 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:52:16,434 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:52:16,434 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:52:16,558 In file included from include/openbabel/atom.h:33, 2021-07-15T21:52:16,558 from include/openbabel/mol.h:43, 2021-07-15T21:52:16,558 from ./src/charges/none.cpp:22: 2021-07-15T21:52:16,558 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:52:16,558 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:52:16,558 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:52:16,559 | ^ 2021-07-15T21:52:16,559 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:16,559 37 | # define UNUSED(x) x 2021-07-15T21:52:16,559 | ^ 2021-07-15T21:52:17,320 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:17,321 from ./src/charges/none.cpp:22: 2021-07-15T21:52:17,321 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:17,321 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:17,321 862 | {return new OBVibrationData(*this);} 2021-07-15T21:52:17,321 | ^ 2021-07-15T21:52:17,322 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:52:17,322 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:52:17,322 | ^~~~~~~~ 2021-07-15T21:52:17,326 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:17,327 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:17,327 907 | {return new OBDOSData(*this);} 2021-07-15T21:52:17,327 | ^ 2021-07-15T21:52:17,327 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:52:17,327 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:52:17,328 | ^~~~~~~~ 2021-07-15T21:52:17,347 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:17,347 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:17,347 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:52:17,347 | ^ 2021-07-15T21:52:17,347 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:52:17,348 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:52:17,348 | ^~~~~~~~ 2021-07-15T21:52:17,353 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:17,354 from ./src/charges/none.cpp:22: 2021-07-15T21:52:17,354 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:17,354 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:17,354 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:52:17,354 | ^ 2021-07-15T21:52:17,355 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:52:17,355 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:52:17,355 | ^~~~~~~~ 2021-07-15T21:52:19,674 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:19,675 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/none.o /tmp/ccDaSXPh.s 2021-07-15T21:52:19,680 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:52:19,824 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:52:19,824 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:52:19,825 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:19,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/qeq.cpp -o build/temp.linux-armv7l-3.9/./src/charges/qeq.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:52:19,836 Using built-in specs. 2021-07-15T21:52:19,837 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:52:19,837 Target: arm-linux-gnueabihf 2021-07-15T21:52:19,838 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:52:19,838 Thread model: posix 2021-07-15T21:52:19,838 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:52:19,838 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:52:19,839 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:52:19,842 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/qeq.cpp -quiet -dumpbase qeq.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/qeq.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cczeockv.s 2021-07-15T21:52:19,854 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:19,855 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:19,855 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:19,856 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:52:19,856 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:52:19,856 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:52:19,857 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:52:19,857 ignoring duplicate directory "/usr/include/" 2021-07-15T21:52:19,857 as it is a non-system directory that duplicates a system directory 2021-07-15T21:52:19,858 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:52:19,858 #include "..." search starts here: 2021-07-15T21:52:19,858 #include <...> search starts here: 2021-07-15T21:52:19,858 /usr/include/eigen3 2021-07-15T21:52:19,859 include 2021-07-15T21:52:19,859 /usr/include/python3.9 2021-07-15T21:52:19,859 /usr/include/c++/10 2021-07-15T21:52:19,859 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:52:19,860 /usr/include/c++/10/backward 2021-07-15T21:52:19,860 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:52:19,860 /usr/local/include 2021-07-15T21:52:19,860 /usr/include/arm-linux-gnueabihf 2021-07-15T21:52:19,860 /usr/include 2021-07-15T21:52:19,860 End of search list. 2021-07-15T21:52:19,865 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:52:19,865 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:52:19,865 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:52:19,879 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:52:21,583 In file included from include/charges/qeq.h:22, 2021-07-15T21:52:21,583 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:21,583 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:52:21,583 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:52:21,584 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:52:21,584 | ~~~~~~~^ 2021-07-15T21:52:21,584 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:52:21,585 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:52:21,585 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:52:21,585 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:52:21,711 In file included from include/openbabel/atom.h:33, 2021-07-15T21:52:21,711 from include/openbabel/mol.h:43, 2021-07-15T21:52:21,711 from include/charges/qeq.h:23, 2021-07-15T21:52:21,712 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:21,712 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:52:21,712 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:52:21,712 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:52:21,712 | ^ 2021-07-15T21:52:21,712 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:52:21,712 37 | # define UNUSED(x) x 2021-07-15T21:52:21,713 | ^ 2021-07-15T21:52:22,470 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:22,470 from include/charges/qeq.h:23, 2021-07-15T21:52:22,470 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:22,470 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:22,471 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:22,471 862 | {return new OBVibrationData(*this);} 2021-07-15T21:52:22,471 | ^ 2021-07-15T21:52:22,471 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:52:22,471 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:52:22,472 | ^~~~~~~~ 2021-07-15T21:52:22,476 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:22,476 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:22,476 907 | {return new OBDOSData(*this);} 2021-07-15T21:52:22,477 | ^ 2021-07-15T21:52:22,477 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:52:22,477 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:52:22,477 | ^~~~~~~~ 2021-07-15T21:52:22,496 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:22,497 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:22,497 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:52:22,497 | ^ 2021-07-15T21:52:22,497 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:52:22,497 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:52:22,498 | ^~~~~~~~ 2021-07-15T21:52:22,503 In file included from include/openbabel/mol.h:52, 2021-07-15T21:52:22,503 from include/charges/qeq.h:23, 2021-07-15T21:52:22,504 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:22,504 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:52:22,504 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:52:22,504 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:52:22,504 | ^ 2021-07-15T21:52:22,504 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:52:22,505 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:52:22,505 | ^~~~~~~~ 2021-07-15T21:52:24,011 In file included from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:24,012 include/charges/qeq.h: At global scope: 2021-07-15T21:52:24,012 include/charges/qeq.h:70:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:52:24,012 70 | }; //namespace OpenBabel 2021-07-15T21:52:24,012 | ^ 2021-07-15T21:52:24,242 ./src/charges/qeq.cpp: In member function ‘Eigen::Vector3d OpenBabel::QEqCharges::GetParameters(unsigned int, int)’: 2021-07-15T21:52:24,242 ./src/charges/qeq.cpp:148:58: warning: unused parameter ‘Q’ [-Wunused-parameter] 2021-07-15T21:52:24,243 148 | Vector3d QEqCharges::GetParameters(unsigned int Z, int Q) 2021-07-15T21:52:24,243 | ~~~~^ 2021-07-15T21:52:53,278 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:52:53,278 from include/openbabel/plugin.h:25, 2021-07-15T21:52:53,278 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:53,279 from include/charges/qeq.h:22, 2021-07-15T21:52:53,279 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:53,279 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2021-07-15T21:52:53,279 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:52:53,279 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:52:53,279 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:53,417 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:52:53,418 from include/openbabel/plugin.h:25, 2021-07-15T21:52:53,418 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:53,418 from include/charges/qeq.h:22, 2021-07-15T21:52:53,418 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:53,418 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::QEqCharges::ParseParamFile()’: 2021-07-15T21:52:53,418 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:52:53,419 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:52:53,419 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:52:53,683 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:52:53,683 from include/openbabel/plugin.h:25, 2021-07-15T21:52:53,683 from include/openbabel/chargemodel.h:24, 2021-07-15T21:52:53,684 from include/charges/qeq.h:22, 2021-07-15T21:52:53,684 from ./src/charges/qeq.cpp:19: 2021-07-15T21:52:53,684 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:52:53,684 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:52:53,684 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:52:53,684 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:52:53,836 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:52:53,837 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:53:05,173 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:53:05,174 from include/openbabel/plugin.h:25, 2021-07-15T21:53:05,174 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:05,174 from include/charges/qeq.h:22, 2021-07-15T21:53:05,174 from ./src/charges/qeq.cpp:19: 2021-07-15T21:53:05,174 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:53:05,174 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:53:05,175 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:53:05,175 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:53:05,175 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:53:05,176 from include/openbabel/plugin.h:25, 2021-07-15T21:53:05,176 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:05,176 from include/charges/qeq.h:22, 2021-07-15T21:53:05,176 from ./src/charges/qeq.cpp:19: 2021-07-15T21:53:05,176 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:53:05,176 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:53:05,176 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:53:08,801 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:53:08,802 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/qeq.o /tmp/cczeockv.s 2021-07-15T21:53:08,808 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:53:13,836 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:53:13,836 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:53:13,836 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:53:13,860 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/qtpie.cpp -o build/temp.linux-armv7l-3.9/./src/charges/qtpie.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:53:13,871 Using built-in specs. 2021-07-15T21:53:13,873 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:53:13,873 Target: arm-linux-gnueabihf 2021-07-15T21:53:13,874 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:53:13,874 Thread model: posix 2021-07-15T21:53:13,875 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:53:13,875 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:53:13,876 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:53:13,880 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/qtpie.cpp -quiet -dumpbase qtpie.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/qtpie.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccDRCzMB.s 2021-07-15T21:53:13,893 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:53:13,894 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:53:13,894 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:53:13,896 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:53:13,897 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:53:13,897 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:53:13,897 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:53:13,897 ignoring duplicate directory "/usr/include/" 2021-07-15T21:53:13,898 as it is a non-system directory that duplicates a system directory 2021-07-15T21:53:13,898 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:53:13,899 #include "..." search starts here: 2021-07-15T21:53:13,899 #include <...> search starts here: 2021-07-15T21:53:13,899 /usr/include/eigen3 2021-07-15T21:53:13,900 include 2021-07-15T21:53:13,900 /usr/include/python3.9 2021-07-15T21:53:13,900 /usr/include/c++/10 2021-07-15T21:53:13,900 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:53:13,900 /usr/include/c++/10/backward 2021-07-15T21:53:13,901 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:53:13,901 /usr/local/include 2021-07-15T21:53:13,901 /usr/include/arm-linux-gnueabihf 2021-07-15T21:53:13,901 /usr/include 2021-07-15T21:53:13,902 End of search list. 2021-07-15T21:53:13,903 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:53:13,905 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:53:13,906 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:53:13,919 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:53:15,604 In file included from include/charges/qtpie.h:22, 2021-07-15T21:53:15,604 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:15,604 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:53:15,604 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:53:15,604 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:53:15,604 | ~~~~~~~^ 2021-07-15T21:53:15,605 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:53:15,605 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:53:15,606 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:53:15,606 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:53:15,729 In file included from include/openbabel/atom.h:33, 2021-07-15T21:53:15,729 from include/openbabel/mol.h:43, 2021-07-15T21:53:15,730 from include/charges/qtpie.h:23, 2021-07-15T21:53:15,730 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:15,730 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:53:15,730 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:53:15,730 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:53:15,730 | ^ 2021-07-15T21:53:15,731 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:53:15,731 37 | # define UNUSED(x) x 2021-07-15T21:53:15,731 | ^ 2021-07-15T21:53:16,495 In file included from include/openbabel/mol.h:52, 2021-07-15T21:53:16,496 from include/charges/qtpie.h:23, 2021-07-15T21:53:16,496 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:16,496 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:53:16,496 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:53:16,496 862 | {return new OBVibrationData(*this);} 2021-07-15T21:53:16,496 | ^ 2021-07-15T21:53:16,497 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:53:16,497 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:53:16,497 | ^~~~~~~~ 2021-07-15T21:53:16,502 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:53:16,502 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:53:16,502 907 | {return new OBDOSData(*this);} 2021-07-15T21:53:16,502 | ^ 2021-07-15T21:53:16,503 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:53:16,503 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:53:16,503 | ^~~~~~~~ 2021-07-15T21:53:16,522 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:53:16,522 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:53:16,522 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:53:16,522 | ^ 2021-07-15T21:53:16,523 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:53:16,523 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:53:16,523 | ^~~~~~~~ 2021-07-15T21:53:16,529 In file included from include/openbabel/mol.h:52, 2021-07-15T21:53:16,529 from include/charges/qtpie.h:23, 2021-07-15T21:53:16,529 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:16,529 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:53:16,529 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:53:16,530 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:53:16,530 | ^ 2021-07-15T21:53:16,530 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:53:16,530 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:53:16,531 | ^~~~~~~~ 2021-07-15T21:53:18,045 In file included from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:18,045 include/charges/qtpie.h: At global scope: 2021-07-15T21:53:18,045 include/charges/qtpie.h:75:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:53:18,046 75 | }; //namespace OpenBabel 2021-07-15T21:53:18,046 | ^ 2021-07-15T21:53:18,276 ./src/charges/qtpie.cpp: In member function ‘Eigen::Vector3d OpenBabel::QTPIECharges::GetParameters(unsigned int, int)’: 2021-07-15T21:53:18,276 ./src/charges/qtpie.cpp:145:60: warning: unused parameter ‘Q’ [-Wunused-parameter] 2021-07-15T21:53:18,276 145 | Vector3d QTPIECharges::GetParameters(unsigned int Z, int Q) 2021-07-15T21:53:18,276 | ~~~~^ 2021-07-15T21:53:47,562 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:53:47,562 from include/openbabel/plugin.h:25, 2021-07-15T21:53:47,562 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:47,562 from include/charges/qtpie.h:22, 2021-07-15T21:53:47,562 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:47,563 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2021-07-15T21:53:47,563 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:53:47,563 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:53:47,563 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:53:47,699 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:53:47,699 from include/openbabel/plugin.h:25, 2021-07-15T21:53:47,699 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:47,699 from include/charges/qtpie.h:22, 2021-07-15T21:53:47,700 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:47,700 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::QTPIECharges::ParseParamFile()’: 2021-07-15T21:53:47,700 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:53:47,700 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:53:47,700 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:53:47,964 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:53:47,965 from include/openbabel/plugin.h:25, 2021-07-15T21:53:47,965 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:47,965 from include/charges/qtpie.h:22, 2021-07-15T21:53:47,965 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:47,965 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:53:47,966 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:53:47,966 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:53:47,966 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:53:48,122 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:53:48,123 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:53:59,401 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:53:59,402 from include/openbabel/plugin.h:25, 2021-07-15T21:53:59,402 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:59,402 from include/charges/qtpie.h:22, 2021-07-15T21:53:59,402 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:59,402 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:53:59,402 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:53:59,403 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:53:59,403 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:53:59,403 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:53:59,404 from include/openbabel/plugin.h:25, 2021-07-15T21:53:59,404 from include/openbabel/chargemodel.h:24, 2021-07-15T21:53:59,404 from include/charges/qtpie.h:22, 2021-07-15T21:53:59,404 from ./src/charges/qtpie.cpp:19: 2021-07-15T21:53:59,404 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:53:59,404 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:53:59,404 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:03,255 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:03,255 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/qtpie.o /tmp/ccDRCzMB.s 2021-07-15T21:54:03,260 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:54:08,340 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:54:08,340 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:54:08,340 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:08,365 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chiral.cpp -o build/temp.linux-armv7l-3.9/./src/chiral.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:54:08,371 Using built-in specs. 2021-07-15T21:54:08,373 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:54:08,373 Target: arm-linux-gnueabihf 2021-07-15T21:54:08,374 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:54:08,374 Thread model: posix 2021-07-15T21:54:08,374 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:54:08,375 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:54:08,377 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:08,380 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chiral.cpp -quiet -dumpbase chiral.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chiral.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTniSC3.s 2021-07-15T21:54:08,394 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:08,394 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:08,394 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:08,395 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:54:08,395 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:54:08,395 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:54:08,396 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:54:08,396 ignoring duplicate directory "/usr/include/" 2021-07-15T21:54:08,396 as it is a non-system directory that duplicates a system directory 2021-07-15T21:54:08,396 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:54:08,397 #include "..." search starts here: 2021-07-15T21:54:08,397 #include <...> search starts here: 2021-07-15T21:54:08,397 /usr/include/eigen3 2021-07-15T21:54:08,397 include 2021-07-15T21:54:08,398 /usr/include/python3.9 2021-07-15T21:54:08,398 /usr/include/c++/10 2021-07-15T21:54:08,398 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:54:08,398 /usr/include/c++/10/backward 2021-07-15T21:54:08,398 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:54:08,399 /usr/local/include 2021-07-15T21:54:08,399 /usr/include/arm-linux-gnueabihf 2021-07-15T21:54:08,399 /usr/include 2021-07-15T21:54:08,399 End of search list. 2021-07-15T21:54:08,400 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:08,400 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:08,400 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:08,410 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:54:09,999 In file included from include/openbabel/atom.h:33, 2021-07-15T21:54:10,000 from include/openbabel/mol.h:43, 2021-07-15T21:54:10,000 from ./src/chiral.cpp:23: 2021-07-15T21:54:10,000 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:54:10,001 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:54:10,001 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:54:10,001 | ^ 2021-07-15T21:54:10,001 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:10,002 37 | # define UNUSED(x) x 2021-07-15T21:54:10,002 | ^ 2021-07-15T21:54:10,753 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:10,753 from ./src/chiral.cpp:23: 2021-07-15T21:54:10,754 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:10,754 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:10,754 862 | {return new OBVibrationData(*this);} 2021-07-15T21:54:10,755 | ^ 2021-07-15T21:54:10,755 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:54:10,755 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:54:10,756 | ^~~~~~~~ 2021-07-15T21:54:10,757 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:10,758 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:10,758 907 | {return new OBDOSData(*this);} 2021-07-15T21:54:10,758 | ^ 2021-07-15T21:54:10,759 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:54:10,759 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:54:10,759 | ^~~~~~~~ 2021-07-15T21:54:10,776 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:10,777 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:10,777 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:54:10,777 | ^ 2021-07-15T21:54:10,778 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:54:10,778 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:54:10,778 | ^~~~~~~~ 2021-07-15T21:54:10,782 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:10,782 from ./src/chiral.cpp:23: 2021-07-15T21:54:10,783 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:10,783 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:10,783 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:54:10,784 | ^ 2021-07-15T21:54:10,784 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:54:10,784 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:54:10,785 | ^~~~~~~~ 2021-07-15T21:54:13,299 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:13,300 from include/openbabel/mol.h:35, 2021-07-15T21:54:13,300 from ./src/chiral.cpp:23: 2021-07-15T21:54:13,300 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:54:13,300 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:13,301 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:13,301 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:14,075 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:14,075 from include/openbabel/mol.h:35, 2021-07-15T21:54:14,076 from ./src/chiral.cpp:23: 2021-07-15T21:54:14,076 /usr/include/c++/10/bits/stl_vector.h: In function ‘double OpenBabel::CalcSignedVolume(OpenBabel::OBMol&, OpenBabel::OBAtom*, bool)’: 2021-07-15T21:54:14,076 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:14,076 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:14,077 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:14,077 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:14,077 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:14,077 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:14,703 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:14,704 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chiral.o /tmp/ccTniSC3.s 2021-07-15T21:54:14,710 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:54:14,992 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:54:14,992 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:54:14,992 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:14,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/conformersearch.cpp -o build/temp.linux-armv7l-3.9/./src/conformersearch.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:54:15,005 Using built-in specs. 2021-07-15T21:54:15,006 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:54:15,007 Target: arm-linux-gnueabihf 2021-07-15T21:54:15,007 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:54:15,007 Thread model: posix 2021-07-15T21:54:15,008 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:54:15,008 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:54:15,009 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:15,013 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/conformersearch.cpp -quiet -dumpbase conformersearch.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/conformersearch.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccN1p6qx.s 2021-07-15T21:54:15,028 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:15,029 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:15,029 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:15,031 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:54:15,031 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:54:15,031 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:54:15,032 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:54:15,032 ignoring duplicate directory "/usr/include/" 2021-07-15T21:54:15,032 as it is a non-system directory that duplicates a system directory 2021-07-15T21:54:15,032 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:54:15,033 #include "..." search starts here: 2021-07-15T21:54:15,033 #include <...> search starts here: 2021-07-15T21:54:15,033 /usr/include/eigen3 2021-07-15T21:54:15,034 include 2021-07-15T21:54:15,034 /usr/include/python3.9 2021-07-15T21:54:15,034 /usr/include/c++/10 2021-07-15T21:54:15,034 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:54:15,034 /usr/include/c++/10/backward 2021-07-15T21:54:15,035 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:54:15,035 /usr/local/include 2021-07-15T21:54:15,035 /usr/include/arm-linux-gnueabihf 2021-07-15T21:54:15,035 /usr/include 2021-07-15T21:54:15,036 End of search list. 2021-07-15T21:54:15,036 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:15,036 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:15,037 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:15,053 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:54:17,168 In file included from include/openbabel/atom.h:33, 2021-07-15T21:54:17,168 from include/openbabel/mol.h:43, 2021-07-15T21:54:17,168 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:17,169 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:17,169 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:54:17,169 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:54:17,170 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:54:17,170 | ^ 2021-07-15T21:54:17,170 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:17,170 37 | # define UNUSED(x) x 2021-07-15T21:54:17,171 | ^ 2021-07-15T21:54:18,141 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:18,141 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:18,141 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:18,141 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:18,142 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:18,142 862 | {return new OBVibrationData(*this);} 2021-07-15T21:54:18,142 | ^ 2021-07-15T21:54:18,143 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:54:18,143 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:54:18,143 | ^~~~~~~~ 2021-07-15T21:54:18,147 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:18,147 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:18,147 907 | {return new OBDOSData(*this);} 2021-07-15T21:54:18,147 | ^ 2021-07-15T21:54:18,148 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:54:18,148 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:54:18,148 | ^~~~~~~~ 2021-07-15T21:54:18,170 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:18,170 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:18,171 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:54:18,171 | ^ 2021-07-15T21:54:18,171 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:54:18,172 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:54:18,172 | ^~~~~~~~ 2021-07-15T21:54:18,177 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:18,177 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:18,177 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:18,178 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:18,178 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:18,178 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:54:18,178 | ^ 2021-07-15T21:54:18,179 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:54:18,179 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:54:18,179 | ^~~~~~~~ 2021-07-15T21:54:18,431 In file included from include/openbabel/atom.h:33, 2021-07-15T21:54:18,432 from include/openbabel/mol.h:43, 2021-07-15T21:54:18,432 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:18,432 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:18,432 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:54:18,433 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:54:18,433 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:54:18,433 | ^ 2021-07-15T21:54:18,433 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:18,434 37 | # define UNUSED(x) x 2021-07-15T21:54:18,434 | ^ 2021-07-15T21:54:18,434 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:54:18,434 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:54:18,435 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:54:18,435 | ^ 2021-07-15T21:54:18,435 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:18,435 37 | # define UNUSED(x) x 2021-07-15T21:54:18,436 | ^ 2021-07-15T21:54:18,604 In file included from ./src/conformersearch.cpp:20: 2021-07-15T21:54:18,604 include/openbabel/conformersearch.h: At global scope: 2021-07-15T21:54:18,605 include/openbabel/conformersearch.h:576:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:54:18,605 576 | }; 2021-07-15T21:54:18,605 | ^ 2021-07-15T21:54:20,197 In file included from include/openbabel/atom.h:33, 2021-07-15T21:54:20,197 from include/openbabel/mol.h:43, 2021-07-15T21:54:20,197 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:20,198 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:20,198 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:54:20,198 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,198 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,199 | ^ 2021-07-15T21:54:20,199 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,199 37 | # define UNUSED(x) x 2021-07-15T21:54:20,199 | ^ 2021-07-15T21:54:20,200 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:54:20,200 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,200 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,201 | ^ 2021-07-15T21:54:20,201 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,201 37 | # define UNUSED(x) x 2021-07-15T21:54:20,202 | ^ 2021-07-15T21:54:20,202 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:54:20,202 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,202 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,203 | ^ 2021-07-15T21:54:20,203 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,203 37 | # define UNUSED(x) x 2021-07-15T21:54:20,203 | ^ 2021-07-15T21:54:20,204 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:54:20,204 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,204 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,205 | ^ 2021-07-15T21:54:20,205 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,206 37 | # define UNUSED(x) x 2021-07-15T21:54:20,206 | ^ 2021-07-15T21:54:20,207 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:54:20,207 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,207 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,207 | ^ 2021-07-15T21:54:20,208 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,208 37 | # define UNUSED(x) x 2021-07-15T21:54:20,208 | ^ 2021-07-15T21:54:20,208 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:54:20,209 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,209 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,209 | ^ 2021-07-15T21:54:20,210 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,210 37 | # define UNUSED(x) x 2021-07-15T21:54:20,210 | ^ 2021-07-15T21:54:20,210 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:54:20,211 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,211 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,211 | ^ 2021-07-15T21:54:20,212 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,212 37 | # define UNUSED(x) x 2021-07-15T21:54:20,212 | ^ 2021-07-15T21:54:20,212 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:54:20,213 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:20,213 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:20,213 | ^ 2021-07-15T21:54:20,213 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:20,214 37 | # define UNUSED(x) x 2021-07-15T21:54:20,214 | ^ 2021-07-15T21:54:20,220 ./src/conformersearch.cpp: In member function ‘virtual bool OpenBabel::OBStericConformerFilter::IsGood(const OpenBabel::OBMol&, const RotorKey&, double*)’: 2021-07-15T21:54:20,220 ./src/conformersearch.cpp:48:74: warning: unused parameter ‘key’ [-Wunused-parameter] 2021-07-15T21:54:20,220 48 | bool OBStericConformerFilter::IsGood(const OBMol &mol, const RotorKey &key, double *conformer) 2021-07-15T21:54:20,221 | ~~~~~~~~~~~~~~~~^~~ 2021-07-15T21:54:20,232 ./src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T21:54:20,232 ./src/conformersearch.cpp:97:55: warning: unused parameter ‘keys’ [-Wunused-parameter] 2021-07-15T21:54:20,232 97 | const RotorKeys &keys, const std::vector &conformers) 2021-07-15T21:54:20,233 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T21:54:20,256 ./src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T21:54:20,257 ./src/conformersearch.cpp:240:12: warning: unused variable ‘score’ [-Wunused-variable] 2021-07-15T21:54:20,257 240 | double score = ff->Energy(false); // no gradients 2021-07-15T21:54:20,257 | ^~~~~ 2021-07-15T21:54:20,257 ./src/conformersearch.cpp:221:65: warning: unused parameter ‘keys’ [-Wunused-parameter] 2021-07-15T21:54:20,258 221 | const RotorKeys &keys, const std::vector &conformers) 2021-07-15T21:54:20,258 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T21:54:20,269 ./src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: 2021-07-15T21:54:20,270 ./src/conformersearch.cpp:337:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:54:20,270 337 | OBRotorIterator end_it = m_rotorList.EndRotors(); 2021-07-15T21:54:20,270 | ^~~~~~ 2021-07-15T21:54:20,371 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: 2021-07-15T21:54:20,371 ./src/conformersearch.cpp:775:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:54:20,372 775 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) 2021-07-15T21:54:20,372 | ~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:20,379 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: 2021-07-15T21:54:20,379 ./src/conformersearch.cpp:836:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:54:20,379 836 | if (iniche > -1) 2021-07-15T21:54:20,379 | ~~~~~~~^~~~ 2021-07-15T21:54:20,396 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: 2021-07-15T21:54:20,396 ./src/conformersearch.cpp:991:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T21:54:20,396 991 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) 2021-07-15T21:54:20,396 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T21:54:20,397 ./src/conformersearch.cpp:1006:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:20,397 1006 | if (dist < min_dist ) 2021-07-15T21:54:20,397 | ~~~~~^~~~~~~~~~ 2021-07-15T21:54:20,398 ./src/conformersearch.cpp:1019:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:54:20,398 1019 | if (imax == -1) 2021-07-15T21:54:20,398 | ~~~~~^~~~~ 2021-07-15T21:54:20,399 ./src/conformersearch.cpp:1035:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T21:54:20,399 1035 | if (dynamic_niches.size () < nb_niches) 2021-07-15T21:54:20,399 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T21:54:20,403 ./src/conformersearch.cpp:962:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 2021-07-15T21:54:20,403 962 | bool flag_niched = false; 2021-07-15T21:54:20,403 | ^~~~~~~~~~~ 2021-07-15T21:54:20,416 ./src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: 2021-07-15T21:54:20,416 ./src/conformersearch.cpp:1124:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:20,416 1124 | while (ninsert < ((half_pop * 2) / 3)) 2021-07-15T21:54:20,417 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:20,417 ./src/conformersearch.cpp:1133:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:20,417 1133 | if (iround < imax) 2021-07-15T21:54:20,418 | ~~~~~~~^~~~~~ 2021-07-15T21:54:20,418 ./src/conformersearch.cpp:1141:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:20,418 1141 | if (ninsert >= half_pop) 2021-07-15T21:54:20,418 | ~~~~~~~~^~~~~~~~~~~ 2021-07-15T21:54:20,419 ./src/conformersearch.cpp:1166:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:20,419 1166 | while (ninsert < half_pop) 2021-07-15T21:54:20,419 | ~~~~~~~~^~~~~~~~~~ 2021-07-15T21:54:20,422 ./src/conformersearch.cpp:1090:23: warning: unused variable ‘lowest’ [-Wunused-variable] 2021-07-15T21:54:20,422 1090 | double sum = 0.0, lowest = 0.0, highest = 0.0; 2021-07-15T21:54:20,422 | ^~~~~~ 2021-07-15T21:54:20,422 ./src/conformersearch.cpp:1090:37: warning: unused variable ‘highest’ [-Wunused-variable] 2021-07-15T21:54:20,423 1090 | double sum = 0.0, lowest = 0.0, highest = 0.0; 2021-07-15T21:54:20,423 | ^~~~~~~ 2021-07-15T21:54:20,423 ./src/conformersearch.cpp: At global scope: 2021-07-15T21:54:20,424 ./src/conformersearch.cpp:1243:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:54:20,424 1243 | }; 2021-07-15T21:54:20,424 | ^ 2021-07-15T21:54:25,079 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:25,080 from include/openbabel/ring.h:24, 2021-07-15T21:54:25,080 from include/openbabel/mol.h:51, 2021-07-15T21:54:25,080 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:25,080 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:25,081 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-15T21:54:25,081 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,081 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T21:54:25,081 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:25,145 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:25,146 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,146 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T21:54:25,146 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:25,146 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,147 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,215 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-15T21:54:25,215 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,216 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T21:54:25,216 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:25,279 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:25,280 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,280 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T21:54:25,280 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:25,281 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,281 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,366 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T21:54:25,367 from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:25,367 from include/openbabel/ring.h:24, 2021-07-15T21:54:25,367 from include/openbabel/mol.h:51, 2021-07-15T21:54:25,368 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:25,368 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:25,368 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:25,369 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:25,369 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T21:54:25,369 | ^~~~~~~~~~~~~ 2021-07-15T21:54:25,505 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:25,505 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:27,522 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:27,523 from include/openbabel/mol.h:35, 2021-07-15T21:54:27,523 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:27,523 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:27,523 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:54:27,524 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:27,524 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:27,524 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:27,667 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T21:54:27,667 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:27,667 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:27,668 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:27,668 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:27,668 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:27,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:27,908 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T21:54:27,908 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:27,908 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:27,909 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:27,909 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:27,909 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:27,910 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:28,047 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’: 2021-07-15T21:54:28,048 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:28,048 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:28,048 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:28,243 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:28,243 from include/openbabel/ring.h:24, 2021-07-15T21:54:28,243 from include/openbabel/mol.h:51, 2021-07-15T21:54:28,244 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:28,244 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:28,244 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:28,244 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,245 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T21:54:28,245 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:28,245 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,247 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,247 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T21:54:28,247 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:28,574 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T21:54:28,574 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,575 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T21:54:28,575 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:28,575 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,578 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:28,578 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T21:54:28,579 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,310 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:29,310 from include/openbabel/mol.h:35, 2021-07-15T21:54:29,310 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:29,311 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:29,311 /usr/include/c++/10/bits/vector.tcc: In member function ‘int OpenBabel::OBConformerSearch::score_population()’: 2021-07-15T21:54:29,311 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,312 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:29,312 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,312 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:29,313 from include/openbabel/ring.h:24, 2021-07-15T21:54:29,313 from include/openbabel/mol.h:51, 2021-07-15T21:54:29,313 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:29,313 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:29,314 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,314 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:54:29,314 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,314 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:54:29,315 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,315 1976 | __comp); 2021-07-15T21:54:29,315 | ~~~~~~~ 2021-07-15T21:54:29,315 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,315 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:54:29,315 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,316 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,316 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:54:29,316 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,317 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,317 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:54:29,317 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,318 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:54:29,318 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,318 1976 | __comp); 2021-07-15T21:54:29,319 | ~~~~~~~ 2021-07-15T21:54:29,319 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,319 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:54:29,319 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,320 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,320 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:54:29,320 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,823 ./src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::MakeSelection()’: 2021-07-15T21:54:29,824 ./src/conformersearch.cpp:535:31: warning: ‘highest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:54:29,824 535 | double sum = 0.0, lowest, highest; 2021-07-15T21:54:29,824 | ^~~~~~~ 2021-07-15T21:54:29,836 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:29,836 from include/openbabel/mol.h:35, 2021-07-15T21:54:29,837 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:29,837 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:29,837 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,837 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:29,838 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,838 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:29,838 from include/openbabel/ring.h:24, 2021-07-15T21:54:29,839 from include/openbabel/mol.h:51, 2021-07-15T21:54:29,839 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:29,839 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:29,839 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,840 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:54:29,840 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,840 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:54:29,840 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,841 1976 | __comp); 2021-07-15T21:54:29,841 | ~~~~~~~ 2021-07-15T21:54:29,841 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,841 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:54:29,842 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,842 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,842 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:54:29,842 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,843 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,843 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:54:29,843 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,844 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:54:29,844 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,844 1976 | __comp); 2021-07-15T21:54:29,845 | ~~~~~~~ 2021-07-15T21:54:29,845 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,845 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:54:29,846 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:29,846 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:29,846 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:54:29,846 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:32,905 In file included from /usr/include/c++/10/map:60, 2021-07-15T21:54:32,906 from include/openbabel/mol.h:37, 2021-07-15T21:54:32,906 from include/openbabel/conformersearch.h:24, 2021-07-15T21:54:32,906 from ./src/conformersearch.cpp:20: 2021-07-15T21:54:32,907 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::vector; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T21:54:32,907 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T21:54:32,907 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T21:54:32,907 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:34,396 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:34,396 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/conformersearch.o /tmp/ccN1p6qx.s 2021-07-15T21:54:34,401 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:54:35,767 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:54:35,767 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:54:35,767 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:35,773 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/confsearch.cpp -o build/temp.linux-armv7l-3.9/./src/confsearch.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:54:35,783 Using built-in specs. 2021-07-15T21:54:35,785 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:54:35,785 Target: arm-linux-gnueabihf 2021-07-15T21:54:35,785 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:54:35,785 Thread model: posix 2021-07-15T21:54:35,786 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:54:35,786 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:54:35,786 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:35,786 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/confsearch.cpp -quiet -dumpbase confsearch.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/confsearch.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccEINFmJ.s 2021-07-15T21:54:35,802 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:35,803 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:35,803 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:35,804 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:54:35,804 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:54:35,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:54:35,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:54:35,805 ignoring duplicate directory "/usr/include/" 2021-07-15T21:54:35,805 as it is a non-system directory that duplicates a system directory 2021-07-15T21:54:35,806 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:54:35,806 #include "..." search starts here: 2021-07-15T21:54:35,806 #include <...> search starts here: 2021-07-15T21:54:35,806 /usr/include/eigen3 2021-07-15T21:54:35,806 include 2021-07-15T21:54:35,806 /usr/include/python3.9 2021-07-15T21:54:35,806 /usr/include/c++/10 2021-07-15T21:54:35,807 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:54:35,807 /usr/include/c++/10/backward 2021-07-15T21:54:35,807 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:54:35,807 /usr/local/include 2021-07-15T21:54:35,807 /usr/include/arm-linux-gnueabihf 2021-07-15T21:54:35,807 /usr/include 2021-07-15T21:54:35,808 End of search list. 2021-07-15T21:54:35,808 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:35,808 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:35,808 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:35,827 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:54:37,607 In file included from include/openbabel/forcefield.h:30, 2021-07-15T21:54:37,607 from ./src/confsearch.cpp:23: 2021-07-15T21:54:37,608 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:54:37,608 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:54:37,608 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:54:37,608 | ^ 2021-07-15T21:54:37,608 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:37,608 37 | # define UNUSED(x) x 2021-07-15T21:54:37,608 | ^ 2021-07-15T21:54:38,419 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:38,420 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:38,420 from ./src/confsearch.cpp:23: 2021-07-15T21:54:38,420 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:38,420 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:38,420 862 | {return new OBVibrationData(*this);} 2021-07-15T21:54:38,420 | ^ 2021-07-15T21:54:38,421 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:54:38,421 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:54:38,421 | ^~~~~~~~ 2021-07-15T21:54:38,426 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:38,426 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:38,426 907 | {return new OBDOSData(*this);} 2021-07-15T21:54:38,426 | ^ 2021-07-15T21:54:38,426 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:54:38,427 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:54:38,427 | ^~~~~~~~ 2021-07-15T21:54:38,446 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:38,446 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:38,446 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:54:38,446 | ^ 2021-07-15T21:54:38,447 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:54:38,447 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:54:38,447 | ^~~~~~~~ 2021-07-15T21:54:38,452 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:38,453 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:38,453 from ./src/confsearch.cpp:23: 2021-07-15T21:54:38,453 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:38,453 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:38,453 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:54:38,453 | ^ 2021-07-15T21:54:38,454 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:54:38,454 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:54:38,454 | ^~~~~~~~ 2021-07-15T21:54:38,748 In file included from include/openbabel/forcefield.h:30, 2021-07-15T21:54:38,748 from ./src/confsearch.cpp:23: 2021-07-15T21:54:38,748 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:54:38,748 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,748 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,749 | ^ 2021-07-15T21:54:38,749 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,749 37 | # define UNUSED(x) x 2021-07-15T21:54:38,749 | ^ 2021-07-15T21:54:38,750 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:54:38,750 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,750 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,750 | ^ 2021-07-15T21:54:38,750 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,750 37 | # define UNUSED(x) x 2021-07-15T21:54:38,750 | ^ 2021-07-15T21:54:38,751 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:54:38,751 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,751 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,751 | ^ 2021-07-15T21:54:38,752 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,752 37 | # define UNUSED(x) x 2021-07-15T21:54:38,752 | ^ 2021-07-15T21:54:38,752 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:54:38,753 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,753 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,753 | ^ 2021-07-15T21:54:38,753 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,753 37 | # define UNUSED(x) x 2021-07-15T21:54:38,753 | ^ 2021-07-15T21:54:38,754 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:54:38,754 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,754 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,754 | ^ 2021-07-15T21:54:38,754 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,754 37 | # define UNUSED(x) x 2021-07-15T21:54:38,755 | ^ 2021-07-15T21:54:38,755 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:54:38,755 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,755 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,756 | ^ 2021-07-15T21:54:38,756 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,756 37 | # define UNUSED(x) x 2021-07-15T21:54:38,756 | ^ 2021-07-15T21:54:38,756 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:54:38,757 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,757 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,757 | ^ 2021-07-15T21:54:38,757 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,757 37 | # define UNUSED(x) x 2021-07-15T21:54:38,757 | ^ 2021-07-15T21:54:38,765 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:54:38,765 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:54:38,766 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:54:38,766 | ^ 2021-07-15T21:54:38,766 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,767 37 | # define UNUSED(x) x 2021-07-15T21:54:38,767 | ^ 2021-07-15T21:54:38,801 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:54:38,802 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:54:38,802 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:54:38,802 | ^ 2021-07-15T21:54:38,802 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,803 37 | # define UNUSED(x) x 2021-07-15T21:54:38,803 | ^ 2021-07-15T21:54:38,803 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:54:38,804 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:54:38,804 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:54:38,804 | ^ 2021-07-15T21:54:38,804 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:38,805 37 | # define UNUSED(x) x 2021-07-15T21:54:38,805 | ^ 2021-07-15T21:54:40,230 In file included from ./src/confsearch.cpp:28: 2021-07-15T21:54:40,230 include/openbabel/tree/tree_util.hh: At global scope: 2021-07-15T21:54:40,231 include/openbabel/tree/tree_util.hh:86:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:54:40,231 86 | }; 2021-07-15T21:54:40,231 | ^ 2021-07-15T21:54:40,394 ./src/confsearch.cpp: In member function ‘unsigned int OpenBabel::LFSR::GetNext()’: 2021-07-15T21:54:40,394 ./src/confsearch.cpp:86:47: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 2021-07-15T21:54:40,395 86 | _lfsr = (_lfsr >> 1) ^ (unsigned int)(0 - (_lfsr & 1u) & _poly); 2021-07-15T21:54:40,395 | ~~^~~~~~~~~~~~~~ 2021-07-15T21:54:40,406 ./src/confsearch.cpp: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2021-07-15T21:54:40,407 ./src/confsearch.cpp:125:20: warning: ‘OpenBabel::OBDiversePoses::cutoff’ will be initialized after [-Wreorder] 2021-07-15T21:54:40,407 125 | const double cutoff; 2021-07-15T21:54:40,407 | ^~~~~~ 2021-07-15T21:54:40,408 ./src/confsearch.cpp:119:12: warning: ‘bool OpenBabel::OBDiversePoses::_percise’ [-Wreorder] 2021-07-15T21:54:40,408 119 | bool _percise; 2021-07-15T21:54:40,408 | ^~~~~~~~ 2021-07-15T21:54:40,409 ./src/confsearch.cpp:139:3: warning: when initialized here [-Wreorder] 2021-07-15T21:54:40,409 139 | OBDiversePoses::OBDiversePoses(const OBMol &ref, double RMSD, bool percise): 2021-07-15T21:54:40,409 | ^~~~~~~~~~~~~~ 2021-07-15T21:54:40,421 ./src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double, int)’: 2021-07-15T21:54:40,421 ./src/confsearch.cpp:166:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:54:40,421 166 | for (unsigned int a = 0; a < natoms; ++a) 2021-07-15T21:54:40,422 | ~~^~~~~~~~ 2021-07-15T21:54:40,459 ./src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double, int)’: 2021-07-15T21:54:40,459 ./src/confsearch.cpp:205:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 2021-07-15T21:54:40,460 205 | double min_rmsd = DBL_MAX; 2021-07-15T21:54:40,460 | ^~~~~~~~ 2021-07-15T21:54:40,464 ./src/confsearch.cpp:269:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:54:40,464 269 | for (int k = *c; k < levels.size(); ++k) { 2021-07-15T21:54:40,465 | ~~^~~~~~~~~~~~~~~ 2021-07-15T21:54:40,466 ./src/confsearch.cpp: In member function ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’: 2021-07-15T21:54:40,467 ./src/confsearch.cpp:283:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:54:40,467 283 | for (unsigned int a = 0; a < natoms; ++a) 2021-07-15T21:54:40,467 | ~~^~~~~~~~ 2021-07-15T21:54:40,488 ./src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2021-07-15T21:54:40,488 ./src/confsearch.cpp:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:54:40,489 426 | for (int i = 1; i < rl.Size() + 1; ++i, rotor = rl.NextRotor(ri)) { // foreach rotor 2021-07-15T21:54:40,489 | ~~^~~~~~~~~~~~~~~ 2021-07-15T21:54:40,505 ./src/confsearch.cpp:464:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:54:40,505 464 | for (int i = 0 ; i < rotor_sizes.size(); ++i) { 2021-07-15T21:54:40,505 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:40,506 ./src/confsearch.cpp:479:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:54:40,506 479 | } while (combination != 1 && counter < nconfs); // The LFSR always terminates with a 1 2021-07-15T21:54:40,507 | ~~~~~~~~^~~~~~~~ 2021-07-15T21:54:40,511 ./src/confsearch.cpp:402:9: warning: unused variable ‘origLogLevel’ [-Wunused-variable] 2021-07-15T21:54:40,512 402 | int origLogLevel = _loglvl; 2021-07-15T21:54:40,512 | ^~~~~~~~~~~~ 2021-07-15T21:54:45,956 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:45,956 from include/openbabel/ring.h:24, 2021-07-15T21:54:45,957 from include/openbabel/mol.h:51, 2021-07-15T21:54:45,957 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:45,957 from ./src/confsearch.cpp:23: 2021-07-15T21:54:45,957 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred > >]’: 2021-07-15T21:54:45,957 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:45,958 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2021-07-15T21:54:45,958 | ^~~~~~~~~~~ 2021-07-15T21:54:45,958 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:45,998 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:45,998 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:45,998 from ./src/confsearch.cpp:23: 2021-07-15T21:54:45,999 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:54:45,999 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:45,999 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:45,999 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:46,113 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:46,114 from include/openbabel/ring.h:24, 2021-07-15T21:54:46,114 from include/openbabel/mol.h:51, 2021-07-15T21:54:46,114 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:46,114 from ./src/confsearch.cpp:23: 2021-07-15T21:54:46,115 /usr/include/c++/10/bits/stl_algo.h: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2021-07-15T21:54:46,115 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:46,115 914 | return std::__remove_if(__first, __last, 2021-07-15T21:54:46,115 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:46,115 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-15T21:54:46,116 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:46,116 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:46,116 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:46,116 from ./src/confsearch.cpp:23: 2021-07-15T21:54:46,116 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:46,117 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:46,117 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:46,393 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:46,394 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:46,394 from ./src/confsearch.cpp:23: 2021-07-15T21:54:46,394 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:54:46,394 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:46,394 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:46,394 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:46,452 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:46,452 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:46,452 from ./src/confsearch.cpp:23: 2021-07-15T21:54:46,453 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector OpenBabel::GetHeavyAtomCoords(const OpenBabel::OBMol*, const std::vector&)’: 2021-07-15T21:54:46,453 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:46,453 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:46,453 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:46,486 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’: 2021-07-15T21:54:46,487 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:46,487 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:46,487 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:46,556 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:46,557 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:46,557 from ./src/confsearch.cpp:23: 2021-07-15T21:54:46,557 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::triple >, double, int>&}; _Tp = OpenBabel::triple, double, int>; _Alloc = std::allocator, double, int> >]’: 2021-07-15T21:54:46,557 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double, int> >::iterator’ changed in GCC 7.1 2021-07-15T21:54:46,557 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:46,557 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:46,831 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:54:46,832 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:46,959 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::triple >, double, int>}; _Tp = OpenBabel::triple, double, int>; _Alloc = std::allocator, double, int> >]’: 2021-07-15T21:54:46,959 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double, int> >::iterator’ changed in GCC 7.1 2021-07-15T21:54:47,221 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:47,221 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:47,221 from ./src/confsearch.cpp:23: 2021-07-15T21:54:47,221 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double, int)’: 2021-07-15T21:54:47,222 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:47,222 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:47,222 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:47,223 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:47,223 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:47,223 from ./src/confsearch.cpp:23: 2021-07-15T21:54:47,223 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:47,224 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:47,224 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:47,658 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double, int)’: 2021-07-15T21:54:47,658 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:47,658 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:47,659 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:47,742 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:54:47,743 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:54:47,743 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:54:47,743 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:47,903 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:47,903 from include/openbabel/ring.h:24, 2021-07-15T21:54:47,904 from include/openbabel/mol.h:51, 2021-07-15T21:54:47,904 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:47,904 from ./src/confsearch.cpp:23: 2021-07-15T21:54:47,904 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T21:54:47,904 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:47,905 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T21:54:47,905 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:47,982 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T21:54:47,983 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:47,983 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T21:54:47,983 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:47,983 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,144 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T21:54:48,144 from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:48,144 from include/openbabel/ring.h:24, 2021-07-15T21:54:48,144 from include/openbabel/mol.h:51, 2021-07-15T21:54:48,144 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:48,145 from ./src/confsearch.cpp:23: 2021-07-15T21:54:48,145 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Distance = int; _Tp = OpenBabel::triple, double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T21:54:48,145 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,145 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T21:54:48,145 | ^~~~~~~~~~~~~ 2021-07-15T21:54:48,265 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T21:54:48,265 /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,265 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, 2021-07-15T21:54:48,265 | ^~~~~~~~~~~ 2021-07-15T21:54:48,266 /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,429 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:48,429 from include/openbabel/ring.h:24, 2021-07-15T21:54:48,430 from include/openbabel/mol.h:51, 2021-07-15T21:54:48,430 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:48,430 from ./src/confsearch.cpp:23: 2021-07-15T21:54:48,430 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T21:54:48,430 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,431 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T21:54:48,431 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,431 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,433 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,434 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T21:54:48,434 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,434 /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,434 1666 | std::__make_heap(__first, __middle, __comp); 2021-07-15T21:54:48,434 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,814 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:48,814 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:48,815 from ./src/confsearch.cpp:23: 2021-07-15T21:54:48,815 /usr/include/c++/10/bits/stl_vector.h: In function ‘void OpenBabel::UpdateConformersFromTree(OpenBabel::OBMol*, std::vector&, OpenBabel::OBDiversePoses*, bool, bool, bool, std::vector*)’: 2021-07-15T21:54:48,815 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,815 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:48,815 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:48,816 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:54:48,816 from include/openbabel/ring.h:24, 2021-07-15T21:54:48,816 from include/openbabel/mol.h:51, 2021-07-15T21:54:48,816 from include/openbabel/forcefield.h:31, 2021-07-15T21:54:48,817 from ./src/confsearch.cpp:23: 2021-07-15T21:54:48,817 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,817 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:54:48,817 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,817 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:54:48,818 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,818 1976 | __comp); 2021-07-15T21:54:48,818 | ~~~~~~~ 2021-07-15T21:54:48,818 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,818 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:54:48,818 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,819 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,819 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:54:48,819 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:48,819 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:48,820 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:48,820 from ./src/confsearch.cpp:23: 2021-07-15T21:54:48,820 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T21:54:48,820 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:48,820 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:48,821 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:48,821 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:48,821 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:49,429 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:54:49,430 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:49,430 from ./src/confsearch.cpp:23: 2021-07-15T21:54:49,430 /usr/include/c++/10/bits/vector.tcc: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2021-07-15T21:54:49,430 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:49,430 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:54:49,431 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:54:49,433 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:54:49,433 from include/openbabel/forcefield.h:23, 2021-07-15T21:54:49,433 from ./src/confsearch.cpp:23: 2021-07-15T21:54:49,434 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:49,434 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:49,434 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:51,463 /usr/include/c++/10/bits/stl_vector.h: In member function ‘int OpenBabel::OBForceField::ScreenByRMSD(double, double, short int, OpenBabel::OBBitVec, bool)’: 2021-07-15T21:54:51,463 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:51,463 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:51,463 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:51,464 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:54:51,464 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:54:51,464 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:54:52,953 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:52,953 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/confsearch.o /tmp/ccEINFmJ.s 2021-07-15T21:54:52,958 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:54:54,368 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:54:54,369 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:54:54,369 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:54,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/data.cpp -o build/temp.linux-armv7l-3.9/./src/data.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:54:54,383 Using built-in specs. 2021-07-15T21:54:54,384 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:54:54,384 Target: arm-linux-gnueabihf 2021-07-15T21:54:54,385 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:54:54,385 Thread model: posix 2021-07-15T21:54:54,385 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:54:54,386 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:54:54,386 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:54:54,386 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/data.cpp -quiet -dumpbase data.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/data.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTgJ6oY.s 2021-07-15T21:54:54,400 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:54,400 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:54,401 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:54,401 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:54:54,401 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:54:54,401 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:54:54,402 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:54:54,402 ignoring duplicate directory "/usr/include/" 2021-07-15T21:54:54,402 as it is a non-system directory that duplicates a system directory 2021-07-15T21:54:54,403 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:54:54,403 #include "..." search starts here: 2021-07-15T21:54:54,403 #include <...> search starts here: 2021-07-15T21:54:54,403 /usr/include/eigen3 2021-07-15T21:54:54,403 include 2021-07-15T21:54:54,404 /usr/include/python3.9 2021-07-15T21:54:54,404 /usr/include/c++/10 2021-07-15T21:54:54,404 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:54:54,404 /usr/include/c++/10/backward 2021-07-15T21:54:54,404 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:54:54,405 /usr/local/include 2021-07-15T21:54:54,405 /usr/include/arm-linux-gnueabihf 2021-07-15T21:54:54,405 /usr/include 2021-07-15T21:54:54,405 End of search list. 2021-07-15T21:54:54,406 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:54:54,406 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:54:54,406 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:54:54,421 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:54:56,187 In file included from include/openbabel/atom.h:33, 2021-07-15T21:54:56,187 from include/openbabel/mol.h:43, 2021-07-15T21:54:56,187 from include/openbabel/data_utilities.h:25, 2021-07-15T21:54:56,188 from ./src/data.cpp:22: 2021-07-15T21:54:56,188 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:54:56,188 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:54:56,189 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:54:56,189 | ^ 2021-07-15T21:54:56,189 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:54:56,189 37 | # define UNUSED(x) x 2021-07-15T21:54:56,190 | ^ 2021-07-15T21:54:56,879 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:56,879 from include/openbabel/data_utilities.h:25, 2021-07-15T21:54:56,880 from ./src/data.cpp:22: 2021-07-15T21:54:56,880 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:56,880 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:56,881 862 | {return new OBVibrationData(*this);} 2021-07-15T21:54:56,881 | ^ 2021-07-15T21:54:56,881 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:54:56,881 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:54:56,882 | ^~~~~~~~ 2021-07-15T21:54:56,884 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:56,884 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:56,884 907 | {return new OBDOSData(*this);} 2021-07-15T21:54:56,885 | ^ 2021-07-15T21:54:56,885 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:54:56,885 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:54:56,886 | ^~~~~~~~ 2021-07-15T21:54:56,903 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:56,903 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:56,903 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:54:56,903 | ^ 2021-07-15T21:54:56,904 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:54:56,904 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:54:56,904 | ^~~~~~~~ 2021-07-15T21:54:56,908 In file included from include/openbabel/mol.h:52, 2021-07-15T21:54:56,909 from include/openbabel/data_utilities.h:25, 2021-07-15T21:54:56,909 from ./src/data.cpp:22: 2021-07-15T21:54:56,909 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:54:56,909 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:54:56,910 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:54:56,910 | ^ 2021-07-15T21:54:56,910 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:54:56,910 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:54:56,911 | ^~~~~~~~ 2021-07-15T21:54:57,559 ./src/data.cpp: In member function ‘bool OpenBabel::OBResidueData::AssignBonds(OpenBabel::OBMol&, OpenBabel::OBBitVec&)’: 2021-07-15T21:54:57,559 ./src/data.cpp:810:56: warning: unused parameter ‘bv’ [-Wunused-parameter] 2021-07-15T21:54:57,559 810 | bool OBResidueData::AssignBonds(OBMol &mol,OBBitVec &bv) 2021-07-15T21:54:57,560 | ~~~~~~~~~~^~ 2021-07-15T21:55:02,663 In file included from /usr/include/string.h:495, 2021-07-15T21:55:02,664 from /usr/include/c++/10/cstring:42, 2021-07-15T21:55:02,664 from include/openbabel/data.h:26, 2021-07-15T21:55:02,664 from ./src/data.cpp:21: 2021-07-15T21:55:02,664 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T21:55:02,665 inlined from ‘OpenBabel::OBElement::OBElement(int, const char*, double, double, double, int, double, double, double, double, double, double, double, std::string)’ at include/openbabel/data.h:118:18, 2021-07-15T21:55:02,665 inlined from ‘virtual void OpenBabel::OBElementTable::ParseLine(const char*)’ at ./src/data.cpp:117:79: 2021-07-15T21:55:02,665 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 2021-07-15T21:55:02,665 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T21:55:02,665 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:02,760 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:55:02,760 from include/openbabel/data.h:28, 2021-07-15T21:55:02,760 from ./src/data.cpp:21: 2021-07-15T21:55:02,760 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T21:55:02,761 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:55:02,761 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:55:02,761 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:03,037 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:55:03,037 from include/openbabel/data.h:28, 2021-07-15T21:55:03,037 from ./src/data.cpp:21: 2021-07-15T21:55:03,038 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void OpenBabel::OBIsotopeTable::ParseLine(const char*)’: 2021-07-15T21:55:03,038 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:03,038 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:03,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:03,337 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:55:03,337 from include/openbabel/data.h:28, 2021-07-15T21:55:03,337 from ./src/data.cpp:21: 2021-07-15T21:55:03,337 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAtomHOF&}; _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’: 2021-07-15T21:55:03,338 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:55:03,338 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:55:03,338 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:03,910 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:55:03,910 from include/openbabel/data.h:28, 2021-07-15T21:55:03,910 from ./src/data.cpp:21: 2021-07-15T21:55:03,910 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)’: 2021-07-15T21:55:03,910 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:03,911 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:03,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:06,279 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:55:06,279 from include/openbabel/data.h:28, 2021-07-15T21:55:06,279 from ./src/data.cpp:21: 2021-07-15T21:55:06,280 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:55:06,280 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:55:06,280 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:55:06,280 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:06,280 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:55:06,338 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector OpenBabel::OBElementTable::GetRGB(int)’: 2021-07-15T21:55:06,338 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:06,338 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:06,339 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:06,339 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:06,339 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:06,339 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:08,770 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:08,770 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/data.o /tmp/ccTgJ6oY.s 2021-07-15T21:55:08,775 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:10,155 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:10,155 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:10,156 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:10,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/data_utilities.cpp -o build/temp.linux-armv7l-3.9/./src/data_utilities.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:10,173 Using built-in specs. 2021-07-15T21:55:10,175 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:10,175 Target: arm-linux-gnueabihf 2021-07-15T21:55:10,175 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:10,175 Thread model: posix 2021-07-15T21:55:10,176 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:10,176 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:10,176 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:10,176 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/data_utilities.cpp -quiet -dumpbase data_utilities.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/data_utilities.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctkMq3z.s 2021-07-15T21:55:10,192 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:10,193 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:10,193 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:10,194 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:10,194 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:10,194 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:10,194 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:10,194 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:10,194 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:10,195 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:10,195 #include "..." search starts here: 2021-07-15T21:55:10,195 #include <...> search starts here: 2021-07-15T21:55:10,195 /usr/include/eigen3 2021-07-15T21:55:10,195 include 2021-07-15T21:55:10,196 /usr/include/python3.9 2021-07-15T21:55:10,196 /usr/include/c++/10 2021-07-15T21:55:10,196 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:10,196 /usr/include/c++/10/backward 2021-07-15T21:55:10,196 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:10,196 /usr/local/include 2021-07-15T21:55:10,196 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:10,197 /usr/include 2021-07-15T21:55:10,197 End of search list. 2021-07-15T21:55:10,197 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:10,197 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:10,197 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:10,218 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:11,794 In file included from include/openbabel/atom.h:33, 2021-07-15T21:55:11,794 from include/openbabel/mol.h:43, 2021-07-15T21:55:11,794 from include/openbabel/data_utilities.h:25, 2021-07-15T21:55:11,794 from ./src/data_utilities.cpp:23: 2021-07-15T21:55:11,794 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:55:11,795 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:55:11,795 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:55:11,795 | ^ 2021-07-15T21:55:11,795 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:55:11,795 37 | # define UNUSED(x) x 2021-07-15T21:55:11,795 | ^ 2021-07-15T21:55:12,582 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:12,582 from include/openbabel/data_utilities.h:25, 2021-07-15T21:55:12,582 from ./src/data_utilities.cpp:23: 2021-07-15T21:55:12,583 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:12,583 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:12,583 862 | {return new OBVibrationData(*this);} 2021-07-15T21:55:12,583 | ^ 2021-07-15T21:55:12,583 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:55:12,583 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:55:12,584 | ^~~~~~~~ 2021-07-15T21:55:12,586 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:12,587 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:12,587 907 | {return new OBDOSData(*this);} 2021-07-15T21:55:12,587 | ^ 2021-07-15T21:55:12,587 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:55:12,587 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:55:12,587 | ^~~~~~~~ 2021-07-15T21:55:12,605 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:12,605 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:12,605 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:55:12,605 | ^ 2021-07-15T21:55:12,606 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:55:12,606 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:55:12,606 | ^~~~~~~~ 2021-07-15T21:55:12,610 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:12,610 from include/openbabel/data_utilities.h:25, 2021-07-15T21:55:12,611 from ./src/data_utilities.cpp:23: 2021-07-15T21:55:12,611 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:12,611 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:12,611 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:55:12,611 | ^ 2021-07-15T21:55:12,611 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:55:12,612 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:55:12,612 | ^~~~~~~~ 2021-07-15T21:55:12,941 ./src/data_utilities.cpp: In function ‘bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)’: 2021-07-15T21:55:12,941 ./src/data_utilities.cpp:121:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:55:12,941 121 | for(int i = 0; (i::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:55:14,338 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:55:14,338 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:55:14,338 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:14,506 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:55:14,507 from include/openbabel/mol.h:35, 2021-07-15T21:55:14,507 from include/openbabel/data_utilities.h:25, 2021-07-15T21:55:14,507 from ./src/data_utilities.cpp:23: 2021-07-15T21:55:14,507 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)’: 2021-07-15T21:55:14,507 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:14,507 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:14,508 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:14,508 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:14,508 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:14,508 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:14,509 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:14,509 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:14,509 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:14,510 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:14,510 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:14,510 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:14,511 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:55:14,511 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:14,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:14,901 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:14,902 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/data_utilities.o /tmp/cctkMq3z.s 2021-07-15T21:55:14,909 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:15,031 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:15,031 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:15,031 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:15,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/asciipainter.cpp -o build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:15,044 Using built-in specs. 2021-07-15T21:55:15,046 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:15,046 Target: arm-linux-gnueabihf 2021-07-15T21:55:15,046 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:15,047 Thread model: posix 2021-07-15T21:55:15,047 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:15,047 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:15,048 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:15,051 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/asciipainter.cpp -quiet -dumpbase asciipainter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cckNeMVQ.s 2021-07-15T21:55:15,065 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:15,066 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:15,066 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:15,068 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:15,069 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:15,069 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:15,069 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:15,070 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:15,070 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:15,070 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:15,071 #include "..." search starts here: 2021-07-15T21:55:15,071 #include <...> search starts here: 2021-07-15T21:55:15,071 /usr/include/eigen3 2021-07-15T21:55:15,071 include 2021-07-15T21:55:15,072 /usr/include/python3.9 2021-07-15T21:55:15,072 /usr/include/c++/10 2021-07-15T21:55:15,072 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:15,072 /usr/include/c++/10/backward 2021-07-15T21:55:15,072 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:15,073 /usr/local/include 2021-07-15T21:55:15,073 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:15,073 /usr/include 2021-07-15T21:55:15,073 End of search list. 2021-07-15T21:55:15,075 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:15,075 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:15,076 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:15,089 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:16,312 In file included from ./src/depict/asciipainter.cpp:19: 2021-07-15T21:55:16,312 include/openbabel/depict/asciipainter.h: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontFamily(const string&)’: 2021-07-15T21:55:16,312 include/openbabel/depict/asciipainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T21:55:16,313 34 | void SetFontFamily(const std::string &fontFamily) {} 2021-07-15T21:55:16,313 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T21:55:16,327 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontSize(int)’: 2021-07-15T21:55:16,327 ./src/depict/asciipainter.cpp:54:38: warning: unused parameter ‘pointSize’ [-Wunused-parameter] 2021-07-15T21:55:16,327 54 | void ASCIIPainter::SetFontSize(int pointSize) 2021-07-15T21:55:16,328 | ~~~~^~~~~~~~~ 2021-07-15T21:55:16,328 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFillColor(const OpenBabel::OBColor&)’: 2021-07-15T21:55:16,328 ./src/depict/asciipainter.cpp:58:50: warning: unused parameter ‘color’ [-Wunused-parameter] 2021-07-15T21:55:16,328 58 | void ASCIIPainter::SetFillColor(const OBColor &color) 2021-07-15T21:55:16,329 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T21:55:16,329 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFillRadial(const OpenBabel::OBColor&, const OpenBabel::OBColor&)’: 2021-07-15T21:55:16,329 ./src/depict/asciipainter.cpp:62:51: warning: unused parameter ‘start’ [-Wunused-parameter] 2021-07-15T21:55:16,329 62 | void ASCIIPainter::SetFillRadial(const OBColor &start, const OBColor &end) 2021-07-15T21:55:16,330 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T21:55:16,330 ./src/depict/asciipainter.cpp:62:73: warning: unused parameter ‘end’ [-Wunused-parameter] 2021-07-15T21:55:16,330 62 | void ASCIIPainter::SetFillRadial(const OBColor &start, const OBColor &end) 2021-07-15T21:55:16,330 | ~~~~~~~~~~~~~~~^~~ 2021-07-15T21:55:16,331 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetPenColor(const OpenBabel::OBColor&)’: 2021-07-15T21:55:16,331 ./src/depict/asciipainter.cpp:67:49: warning: unused parameter ‘color’ [-Wunused-parameter] 2021-07-15T21:55:16,331 67 | void ASCIIPainter::SetPenColor(const OBColor &color) 2021-07-15T21:55:16,331 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T21:55:16,332 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetPenWidth(double)’: 2021-07-15T21:55:16,332 ./src/depict/asciipainter.cpp:71:41: warning: unused parameter ‘width’ [-Wunused-parameter] 2021-07-15T21:55:16,332 71 | void ASCIIPainter::SetPenWidth(double width) 2021-07-15T21:55:16,332 | ~~~~~~~^~~~~ 2021-07-15T21:55:16,356 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawLine(double, double, double, double, const std::vector&)’: 2021-07-15T21:55:16,356 ./src/depict/asciipainter.cpp:80:103: warning: unused parameter ‘dashes’ [-Wunused-parameter] 2021-07-15T21:55:16,357 80 | void ASCIIPainter::DrawLine(double x1, double y1, double x2, double y2, const std::vector & dashes) 2021-07-15T21:55:16,357 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T21:55:16,377 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawCircle(double, double, double)’: 2021-07-15T21:55:16,378 ./src/depict/asciipainter.cpp:106:40: warning: unused parameter ‘x’ [-Wunused-parameter] 2021-07-15T21:55:16,378 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T21:55:16,378 | ~~~~~~~^ 2021-07-15T21:55:16,378 ./src/depict/asciipainter.cpp:106:50: warning: unused parameter ‘y’ [-Wunused-parameter] 2021-07-15T21:55:16,378 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T21:55:16,378 | ~~~~~~~^ 2021-07-15T21:55:16,379 ./src/depict/asciipainter.cpp:106:60: warning: unused parameter ‘r’ [-Wunused-parameter] 2021-07-15T21:55:16,379 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T21:55:16,379 | ~~~~~~~^ 2021-07-15T21:55:16,380 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawBall(double, double, double, double)’: 2021-07-15T21:55:16,380 ./src/depict/asciipainter.cpp:110:38: warning: unused parameter ‘x’ [-Wunused-parameter] 2021-07-15T21:55:16,380 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T21:55:16,380 | ~~~~~~~^ 2021-07-15T21:55:16,380 ./src/depict/asciipainter.cpp:110:48: warning: unused parameter ‘y’ [-Wunused-parameter] 2021-07-15T21:55:16,381 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T21:55:16,381 | ~~~~~~~^ 2021-07-15T21:55:16,381 ./src/depict/asciipainter.cpp:110:58: warning: unused parameter ‘r’ [-Wunused-parameter] 2021-07-15T21:55:16,381 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T21:55:16,381 | ~~~~~~~^ 2021-07-15T21:55:16,382 ./src/depict/asciipainter.cpp:110:68: warning: unused parameter ‘opacity’ [-Wunused-parameter] 2021-07-15T21:55:16,382 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T21:55:16,382 | ~~~~~~~^~~~~~~ 2021-07-15T21:55:16,383 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const string&)’: 2021-07-15T21:55:16,383 ./src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:55:16,383 118 | for (int i=0; i search starts here: 2021-07-15T21:55:18,648 /usr/include/eigen3 2021-07-15T21:55:18,649 include 2021-07-15T21:55:18,649 /usr/include/python3.9 2021-07-15T21:55:18,649 /usr/include/c++/10 2021-07-15T21:55:18,649 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:18,650 /usr/include/c++/10/backward 2021-07-15T21:55:18,650 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:18,650 /usr/local/include 2021-07-15T21:55:18,651 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:18,651 /usr/include 2021-07-15T21:55:18,651 End of search list. 2021-07-15T21:55:18,652 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:18,652 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:18,653 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:18,661 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:19,873 In file included from ./src/depict/commandpainter.cpp:19: 2021-07-15T21:55:19,874 include/openbabel/depict/commandpainter.h: In member function ‘virtual void OpenBabel::CommandPainter::SetFontFamily(const string&)’: 2021-07-15T21:55:19,874 include/openbabel/depict/commandpainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T21:55:19,874 34 | void SetFontFamily(const std::string &fontFamily) {} // FIXME 2021-07-15T21:55:19,875 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T21:55:19,926 ./src/depict/commandpainter.cpp: In member function ‘virtual void OpenBabel::CommandPainter::DrawBall(double, double, double, double)’: 2021-07-15T21:55:19,927 ./src/depict/commandpainter.cpp:115:70: warning: unused parameter ‘opacity’ [-Wunused-parameter] 2021-07-15T21:55:19,927 115 | void CommandPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T21:55:19,928 | ~~~~~~~^~~~~~~ 2021-07-15T21:55:19,931 ./src/depict/commandpainter.cpp: In member function ‘virtual OpenBabel::OBFontMetrics OpenBabel::CommandPainter::GetFontMetrics(const string&)’: 2021-07-15T21:55:19,931 ./src/depict/commandpainter.cpp:125:67: warning: unused parameter ‘text’ [-Wunused-parameter] 2021-07-15T21:55:19,932 125 | OBFontMetrics CommandPainter::GetFontMetrics(const std::string &text) 2021-07-15T21:55:19,932 | ~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T21:55:20,584 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:20,584 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o /tmp/ccvUxj58.s 2021-07-15T21:55:20,589 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:20,678 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:20,679 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:20,679 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:20,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/depict.cpp -o build/temp.linux-armv7l-3.9/./src/depict/depict.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:20,691 Using built-in specs. 2021-07-15T21:55:20,693 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:20,694 Target: arm-linux-gnueabihf 2021-07-15T21:55:20,694 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:20,694 Thread model: posix 2021-07-15T21:55:20,695 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:20,695 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:20,697 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:20,700 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/depict.cpp -quiet -dumpbase depict.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/depict.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8nWE6j.s 2021-07-15T21:55:20,712 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:20,713 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:20,713 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:20,714 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:20,714 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:20,714 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:20,715 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:20,715 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:20,715 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:20,715 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:20,716 #include "..." search starts here: 2021-07-15T21:55:20,716 #include <...> search starts here: 2021-07-15T21:55:20,716 /usr/include/eigen3 2021-07-15T21:55:20,716 include 2021-07-15T21:55:20,717 /usr/include/python3.9 2021-07-15T21:55:20,717 /usr/include/c++/10 2021-07-15T21:55:20,717 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:20,717 /usr/include/c++/10/backward 2021-07-15T21:55:20,718 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:20,718 /usr/local/include 2021-07-15T21:55:20,718 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:20,718 /usr/include 2021-07-15T21:55:20,718 End of search list. 2021-07-15T21:55:20,719 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:20,719 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:20,719 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:20,730 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:22,334 In file included from include/openbabel/atom.h:33, 2021-07-15T21:55:22,335 from include/openbabel/mol.h:43, 2021-07-15T21:55:22,335 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:22,336 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:55:22,336 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:55:22,336 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:55:22,337 | ^ 2021-07-15T21:55:22,337 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:55:22,338 37 | # define UNUSED(x) x 2021-07-15T21:55:22,338 | ^ 2021-07-15T21:55:23,129 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:23,129 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:23,129 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:23,130 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:23,130 862 | {return new OBVibrationData(*this);} 2021-07-15T21:55:23,131 | ^ 2021-07-15T21:55:23,131 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:55:23,132 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:55:23,132 | ^~~~~~~~ 2021-07-15T21:55:23,133 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:23,134 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:23,134 907 | {return new OBDOSData(*this);} 2021-07-15T21:55:23,135 | ^ 2021-07-15T21:55:23,135 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:55:23,136 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:55:23,136 | ^~~~~~~~ 2021-07-15T21:55:23,152 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:23,153 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:23,153 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:55:23,154 | ^ 2021-07-15T21:55:23,154 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:55:23,155 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:55:23,155 | ^~~~~~~~ 2021-07-15T21:55:23,158 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:23,159 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:23,159 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:23,159 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:23,160 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:55:23,160 | ^ 2021-07-15T21:55:23,161 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:55:23,161 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:55:23,161 | ^~~~~~~~ 2021-07-15T21:55:23,734 ./src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OpenBabel::OBAtom*)’: 2021-07-15T21:55:23,735 ./src/depict/depict.cpp:280:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 2021-07-15T21:55:23,735 280 | int nclasses = end_pos - copy_sym.begin(); 2021-07-15T21:55:23,735 | ^~~~~~~~ 2021-07-15T21:55:23,945 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtom(OpenBabel::OBAtom*)’: 2021-07-15T21:55:23,945 ./src/depict/depict.cpp:839:42: warning: unused parameter ‘atom’ [-Wunused-parameter] 2021-07-15T21:55:23,945 839 | void OBDepictPrivate::DrawAtom(OBAtom *atom) 2021-07-15T21:55:23,946 | ~~~~~~~~^~~~ 2021-07-15T21:55:23,955 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const string&, int, const OpenBabel::vector3&)’: 2021-07-15T21:55:23,955 ./src/depict/depict.cpp:966:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:55:23,955 966 | OBFontMetrics metrics = painter->GetFontMetrics(str); 2021-07-15T21:55:23,955 | ^~~~~~~ 2021-07-15T21:55:23,956 ./src/depict/depict.cpp:971:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:55:23,956 971 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); 2021-07-15T21:55:23,956 | ^~~~~~~ 2021-07-15T21:55:23,960 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawSimpleBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, int, bool)’: 2021-07-15T21:55:23,960 ./src/depict/depict.cpp:1011:36: warning: unused parameter ‘crossed_bond’ [-Wunused-parameter] 2021-07-15T21:55:23,961 1011 | OBAtom* endAtom, int order, bool crossed_bond) 2021-07-15T21:55:23,961 | ~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:23,984 ./src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: 2021-07-15T21:55:23,985 ./src/depict/depict.cpp:1133:152: warning: unused parameter ‘center’ [-Wunused-parameter] 2021-07-15T21:55:23,985 1133 | inline void OBDepictPrivateBallAndStick::DrawAromaticRingBond(OBAtom *prevAtom, OBAtom *beginAtom, OBAtom *endAtom, OBAtom *nextAtom, const vector3 ¢er, double dist) 2021-07-15T21:55:23,985 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T21:55:30,618 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:55:30,618 from include/openbabel/mol.h:35, 2021-07-15T21:55:30,619 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:30,619 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T21:55:30,619 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:55:30,619 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:55:30,619 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,670 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T21:55:30,671 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:55:30,718 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T21:55:30,718 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,718 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,718 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,719 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,719 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,719 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,720 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,720 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,784 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T21:55:30,784 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,784 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,784 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,785 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,785 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,786 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,786 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:55:30,786 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,862 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:55:30,863 from include/openbabel/ring.h:24, 2021-07-15T21:55:30,863 from include/openbabel/mol.h:51, 2021-07-15T21:55:30,863 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:30,863 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T21:55:30,863 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,863 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T21:55:30,863 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,864 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,900 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T21:55:30,900 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,901 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-15T21:55:30,901 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:30,901 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,901 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,902 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,902 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,902 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,947 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T21:55:30,947 from /usr/include/c++/10/algorithm:62, 2021-07-15T21:55:30,947 from include/openbabel/ring.h:24, 2021-07-15T21:55:30,947 from include/openbabel/mol.h:51, 2021-07-15T21:55:30,948 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:30,948 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T21:55:30,948 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:30,948 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T21:55:30,948 | ^~~~~~~~~~~~~ 2021-07-15T21:55:31,022 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:55:31,023 from include/openbabel/ring.h:24, 2021-07-15T21:55:31,023 from include/openbabel/mol.h:51, 2021-07-15T21:55:31,023 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:31,023 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T21:55:31,023 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,023 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T21:55:31,024 | ^~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,024 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,024 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,025 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,026 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-15T21:55:31,026 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,026 1925 | __comp); 2021-07-15T21:55:31,026 | ~~~~~~~ 2021-07-15T21:55:31,026 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,027 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,027 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T21:55:31,027 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,747 ./src/depict/depict.cpp: In member function ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: 2021-07-15T21:55:31,747 ./src/depict/depict.cpp:423:25: warning: ‘max_z’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,748 423 | d->zScale = max_z - min_z; 2021-07-15T21:55:31,748 | ~~~~~~^~~~~~~ 2021-07-15T21:55:31,748 ./src/depict/depict.cpp:423:25: warning: ‘min_z’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,749 ./src/depict/depict.cpp:421:22: warning: ‘max_y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,749 421 | height = max_y - min_y + 2*margin; 2021-07-15T21:55:31,749 | ~~~~~~^~~~~~~ 2021-07-15T21:55:31,749 ./src/depict/depict.cpp:421:22: warning: ‘min_y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,750 ./src/depict/depict.cpp:420:22: warning: ‘max_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,750 420 | width = max_x - min_x + 2*margin; 2021-07-15T21:55:31,750 | ~~~~~~^~~~~~~ 2021-07-15T21:55:31,750 ./src/depict/depict.cpp:420:22: warning: ‘min_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:55:31,791 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:55:31,791 from include/openbabel/mol.h:35, 2021-07-15T21:55:31,792 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:31,792 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,792 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:55:31,792 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:55:31,793 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T21:55:31,793 from include/openbabel/ring.h:24, 2021-07-15T21:55:31,793 from include/openbabel/mol.h:51, 2021-07-15T21:55:31,793 from ./src/depict/depict.cpp:20: 2021-07-15T21:55:31,793 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,793 1974 | std::__introsort_loop(__first, __last, 2021-07-15T21:55:31,794 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,794 1975 | std::__lg(__last - __first) * 2, 2021-07-15T21:55:31,794 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,794 1976 | __comp); 2021-07-15T21:55:31,794 | ~~~~~~~ 2021-07-15T21:55:31,795 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,795 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T21:55:31,795 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:31,796 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:55:31,796 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T21:55:31,796 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:55:34,415 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:34,415 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/depict.o /tmp/cc8nWE6j.s 2021-07-15T21:55:34,420 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:35,330 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:35,331 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:35,331 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:35,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/svgpainter.cpp -o build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:35,344 Using built-in specs. 2021-07-15T21:55:35,346 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:35,346 Target: arm-linux-gnueabihf 2021-07-15T21:55:35,346 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:35,346 Thread model: posix 2021-07-15T21:55:35,346 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:35,346 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:35,347 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:35,347 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/svgpainter.cpp -quiet -dumpbase svgpainter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cczeoBtx.s 2021-07-15T21:55:35,360 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:35,360 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:35,360 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:35,360 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:35,361 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:35,361 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:35,361 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:35,361 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:35,361 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:35,362 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:35,362 #include "..." search starts here: 2021-07-15T21:55:35,362 #include <...> search starts here: 2021-07-15T21:55:35,362 /usr/include/eigen3 2021-07-15T21:55:35,362 include 2021-07-15T21:55:35,362 /usr/include/python3.9 2021-07-15T21:55:35,363 /usr/include/c++/10 2021-07-15T21:55:35,363 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:35,363 /usr/include/c++/10/backward 2021-07-15T21:55:35,363 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:35,363 /usr/local/include 2021-07-15T21:55:35,364 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:35,364 /usr/include 2021-07-15T21:55:35,364 End of search list. 2021-07-15T21:55:35,364 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:35,364 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:35,365 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:35,391 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:36,951 In file included from ./src/depict/svgpainter.cpp:18: 2021-07-15T21:55:36,952 include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: 2021-07-15T21:55:36,952 include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 2021-07-15T21:55:36,953 77 | int m_fontPointSize; 2021-07-15T21:55:36,953 | ^~~~~~~~~~~~~~~ 2021-07-15T21:55:36,953 include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 2021-07-15T21:55:36,953 75 | bool m_isFillcolor; 2021-07-15T21:55:36,954 | ^~~~~~~~~~~~~ 2021-07-15T21:55:36,954 ./src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 2021-07-15T21:55:36,954 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, 2021-07-15T21:55:36,955 | ^~~~~~~~~~ 2021-07-15T21:55:36,955 In file included from ./src/depict/svgpainter.cpp:18: 2021-07-15T21:55:36,955 include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 2021-07-15T21:55:36,956 75 | bool m_isFillcolor; 2021-07-15T21:55:36,956 | ^~~~~~~~~~~~~ 2021-07-15T21:55:36,956 include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 2021-07-15T21:55:36,956 74 | std::set *m_Gradients; 2021-07-15T21:55:36,957 | ^~~~~~~~~~~ 2021-07-15T21:55:36,957 ./src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 2021-07-15T21:55:36,957 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, 2021-07-15T21:55:36,958 | ^~~~~~~~~~ 2021-07-15T21:55:37,070 ./src/depict/svgpainter.cpp: In member function ‘void OpenBabel::SVGPainter::WriteImage(const string&)’: 2021-07-15T21:55:37,071 ./src/depict/svgpainter.cpp:172:50: warning: unused parameter ‘filename’ [-Wunused-parameter] 2021-07-15T21:55:37,071 172 | void SVGPainter::WriteImage(const std::string &filename) 2021-07-15T21:55:37,071 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-15T21:55:39,033 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:39,033 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o /tmp/cczeoBtx.s 2021-07-15T21:55:39,040 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:39,328 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:39,329 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:39,329 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:39,333 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptor.cpp -o build/temp.linux-armv7l-3.9/./src/descriptor.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:39,339 Using built-in specs. 2021-07-15T21:55:39,340 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:39,340 Target: arm-linux-gnueabihf 2021-07-15T21:55:39,340 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:39,340 Thread model: posix 2021-07-15T21:55:39,341 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:39,341 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:39,341 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:39,341 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptor.cpp -quiet -dumpbase descriptor.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptor.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccO05F8L.s 2021-07-15T21:55:39,356 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:39,356 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:39,357 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:39,357 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:39,358 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:39,358 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:39,358 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:39,358 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:39,358 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:39,359 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:39,359 #include "..." search starts here: 2021-07-15T21:55:39,359 #include <...> search starts here: 2021-07-15T21:55:39,359 /usr/include/eigen3 2021-07-15T21:55:39,359 include 2021-07-15T21:55:39,360 /usr/include/python3.9 2021-07-15T21:55:39,360 /usr/include/c++/10 2021-07-15T21:55:39,360 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:39,360 /usr/include/c++/10/backward 2021-07-15T21:55:39,360 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:39,360 /usr/local/include 2021-07-15T21:55:39,361 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:39,361 /usr/include 2021-07-15T21:55:39,361 End of search list. 2021-07-15T21:55:39,361 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:39,361 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:39,361 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:39,381 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:41,130 In file included from include/openbabel/generic.h:31, 2021-07-15T21:55:41,131 from ./src/descriptor.cpp:21: 2021-07-15T21:55:41,131 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:55:41,131 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:55:41,131 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:55:41,131 | ^ 2021-07-15T21:55:41,131 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:55:41,132 37 | # define UNUSED(x) x 2021-07-15T21:55:41,132 | ^ 2021-07-15T21:55:41,347 In file included from ./src/descriptor.cpp:21: 2021-07-15T21:55:41,347 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:41,347 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:41,347 862 | {return new OBVibrationData(*this);} 2021-07-15T21:55:41,348 | ^ 2021-07-15T21:55:41,348 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:55:41,348 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:55:41,348 | ^~~~~~~~ 2021-07-15T21:55:41,353 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:41,353 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:41,353 907 | {return new OBDOSData(*this);} 2021-07-15T21:55:41,353 | ^ 2021-07-15T21:55:41,353 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:55:41,354 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:55:41,354 | ^~~~~~~~ 2021-07-15T21:55:41,372 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:41,373 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:41,373 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:55:41,373 | ^ 2021-07-15T21:55:41,373 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:55:41,374 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:55:41,374 | ^~~~~~~~ 2021-07-15T21:55:41,379 In file included from ./src/descriptor.cpp:21: 2021-07-15T21:55:41,380 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:41,380 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:41,380 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:55:41,380 | ^ 2021-07-15T21:55:41,380 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:55:41,381 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:55:41,381 | ^~~~~~~~ 2021-07-15T21:55:45,593 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:45,593 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptor.o /tmp/ccO05F8L.s 2021-07-15T21:55:45,600 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:46,191 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:46,192 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:46,192 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:46,195 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/cansmidescriptor.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:46,203 Using built-in specs. 2021-07-15T21:55:46,204 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:46,205 Target: arm-linux-gnueabihf 2021-07-15T21:55:46,205 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:46,205 Thread model: posix 2021-07-15T21:55:46,206 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:46,206 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:46,207 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:46,209 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/cansmidescriptor.cpp -quiet -dumpbase cansmidescriptor.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccec3r32.s 2021-07-15T21:55:46,222 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:46,222 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:46,222 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:46,223 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:46,223 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:46,223 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:46,223 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:46,223 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:46,224 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:46,224 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:46,224 #include "..." search starts here: 2021-07-15T21:55:46,224 #include <...> search starts here: 2021-07-15T21:55:46,224 /usr/include/eigen3 2021-07-15T21:55:46,225 include 2021-07-15T21:55:46,225 /usr/include/python3.9 2021-07-15T21:55:46,225 /usr/include/c++/10 2021-07-15T21:55:46,225 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:46,225 /usr/include/c++/10/backward 2021-07-15T21:55:46,226 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:46,226 /usr/local/include 2021-07-15T21:55:46,226 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:46,226 /usr/include 2021-07-15T21:55:46,226 End of search list. 2021-07-15T21:55:46,227 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:46,227 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:46,227 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:46,240 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:47,885 ./src/descriptors/cansmidescriptor.cpp: In member function ‘virtual bool OpenBabel::CanSmiles::Compare(OpenBabel::OBBase*, std::istream&, bool, std::string*)’: 2021-07-15T21:55:47,885 ./src/descriptors/cansmidescriptor.cpp:42:80: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:55:47,885 42 | bool CanSmiles::Compare(OBBase* pOb, istream& optionText, bool noEval, string* param) 2021-07-15T21:55:47,886 | ~~~~~~~~^~~~~ 2021-07-15T21:55:49,161 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:49,161 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o /tmp/ccec3r32.s 2021-07-15T21:55:49,170 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:49,346 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:49,347 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:49,347 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:49,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/cmpdfilter.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:49,356 Using built-in specs. 2021-07-15T21:55:49,357 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:49,357 Target: arm-linux-gnueabihf 2021-07-15T21:55:49,358 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:49,358 Thread model: posix 2021-07-15T21:55:49,358 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:49,358 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:49,358 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:49,358 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/cmpdfilter.cpp -quiet -dumpbase cmpdfilter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZwilSh.s 2021-07-15T21:55:49,370 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:49,371 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:49,371 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:49,372 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:49,372 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:49,372 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:49,372 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:49,372 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:49,373 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:49,373 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:49,373 #include "..." search starts here: 2021-07-15T21:55:49,373 #include <...> search starts here: 2021-07-15T21:55:49,374 /usr/include/eigen3 2021-07-15T21:55:49,374 include 2021-07-15T21:55:49,374 /usr/include/python3.9 2021-07-15T21:55:49,374 /usr/include/c++/10 2021-07-15T21:55:49,374 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:49,374 /usr/include/c++/10/backward 2021-07-15T21:55:49,375 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:49,375 /usr/local/include 2021-07-15T21:55:49,375 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:49,375 /usr/include 2021-07-15T21:55:49,376 End of search list. 2021-07-15T21:55:49,376 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:49,376 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:49,376 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:49,391 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:50,830 ./src/descriptors/cmpdfilter.cpp: In member function ‘virtual bool OpenBabel::CompoundFilter::Compare(OpenBabel::OBBase*, std::istream&, bool, std::string*)’: 2021-07-15T21:55:50,830 ./src/descriptors/cmpdfilter.cpp:74:68: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:55:50,830 74 | virtual bool Compare(OBBase* pOb, istream&, bool noEval, string* param) 2021-07-15T21:55:50,830 | ~~~~~~~~^~~~~ 2021-07-15T21:55:52,125 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:52,125 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o /tmp/ccZwilSh.s 2021-07-15T21:55:52,133 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:52,311 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:52,311 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:52,311 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:52,315 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/filters.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/filters.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:52,321 Using built-in specs. 2021-07-15T21:55:52,323 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:52,323 Target: arm-linux-gnueabihf 2021-07-15T21:55:52,323 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:52,324 Thread model: posix 2021-07-15T21:55:52,324 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:52,324 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:52,325 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:52,328 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/filters.cpp -quiet -dumpbase filters.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/filters.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccjV0cZr.s 2021-07-15T21:55:52,340 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:52,341 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:52,341 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:52,341 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:52,342 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:52,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:52,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:52,342 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:52,342 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:52,343 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:52,343 #include "..." search starts here: 2021-07-15T21:55:52,343 #include <...> search starts here: 2021-07-15T21:55:52,343 /usr/include/eigen3 2021-07-15T21:55:52,343 include 2021-07-15T21:55:52,344 /usr/include/python3.9 2021-07-15T21:55:52,344 /usr/include/c++/10 2021-07-15T21:55:52,344 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:52,344 /usr/include/c++/10/backward 2021-07-15T21:55:52,344 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:52,344 /usr/local/include 2021-07-15T21:55:52,345 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:52,345 /usr/include 2021-07-15T21:55:52,345 End of search list. 2021-07-15T21:55:52,345 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:52,346 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:52,346 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:52,360 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:53,990 In file included from include/openbabel/atom.h:33, 2021-07-15T21:55:53,991 from include/openbabel/mol.h:43, 2021-07-15T21:55:53,991 from ./src/descriptors/filters.cpp:21: 2021-07-15T21:55:53,991 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:55:53,991 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:55:53,992 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:55:53,992 | ^ 2021-07-15T21:55:53,992 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:55:53,992 37 | # define UNUSED(x) x 2021-07-15T21:55:53,992 | ^ 2021-07-15T21:55:54,709 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:54,709 from ./src/descriptors/filters.cpp:21: 2021-07-15T21:55:54,709 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:54,710 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:54,710 862 | {return new OBVibrationData(*this);} 2021-07-15T21:55:54,710 | ^ 2021-07-15T21:55:54,710 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:55:54,711 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:55:54,711 | ^~~~~~~~ 2021-07-15T21:55:54,713 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:54,714 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:54,714 907 | {return new OBDOSData(*this);} 2021-07-15T21:55:54,714 | ^ 2021-07-15T21:55:54,714 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:55:54,715 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:55:54,715 | ^~~~~~~~ 2021-07-15T21:55:54,732 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:54,733 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:54,733 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:55:54,733 | ^ 2021-07-15T21:55:54,733 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:55:54,734 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:55:54,734 | ^~~~~~~~ 2021-07-15T21:55:54,738 In file included from include/openbabel/mol.h:52, 2021-07-15T21:55:54,738 from ./src/descriptors/filters.cpp:21: 2021-07-15T21:55:54,738 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:55:54,739 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:55:54,739 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:55:54,739 | ^ 2021-07-15T21:55:54,739 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:55:54,740 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:55:54,740 | ^~~~~~~~ 2021-07-15T21:55:55,066 ./src/descriptors/filters.cpp: In member function ‘virtual double OpenBabel::MWFilter::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T21:55:55,066 ./src/descriptors/filters.cpp:36:47: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:55:55,067 36 | virtual double Predict(OBBase* pOb, string* param=NULL) 2021-07-15T21:55:55,067 | ^ 2021-07-15T21:55:55,075 ./src/descriptors/filters.cpp: In member function ‘virtual double OpenBabel::FormulaDescriptor::GetStringValue(OpenBabel::OBBase*, std::string&, std::string*)’: 2021-07-15T21:55:55,075 ./src/descriptors/filters.cpp:142:80: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:55:55,075 142 | virtual double GetStringValue(OBBase* pOb, std::string& svalue, std::string* param=NULL) 2021-07-15T21:55:55,076 | ^ 2021-07-15T21:55:57,517 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:57,518 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/filters.o /tmp/ccjV0cZr.s 2021-07-15T21:55:57,529 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:55:57,730 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:55:57,730 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:55:57,730 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:57,732 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/groupcontrib.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:55:57,742 Using built-in specs. 2021-07-15T21:55:57,743 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:55:57,743 Target: arm-linux-gnueabihf 2021-07-15T21:55:57,743 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:55:57,744 Thread model: posix 2021-07-15T21:55:57,744 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:55:57,744 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:55:57,744 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:55:57,744 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/groupcontrib.cpp -quiet -dumpbase groupcontrib.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctKwCqI.s 2021-07-15T21:55:57,758 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:57,758 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:57,759 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:57,759 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:55:57,759 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:55:57,759 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:55:57,760 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:55:57,760 ignoring duplicate directory "/usr/include/" 2021-07-15T21:55:57,760 as it is a non-system directory that duplicates a system directory 2021-07-15T21:55:57,760 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:55:57,761 #include "..." search starts here: 2021-07-15T21:55:57,761 #include <...> search starts here: 2021-07-15T21:55:57,761 /usr/include/eigen3 2021-07-15T21:55:57,761 include 2021-07-15T21:55:57,761 /usr/include/python3.9 2021-07-15T21:55:57,761 /usr/include/c++/10 2021-07-15T21:55:57,762 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:55:57,762 /usr/include/c++/10/backward 2021-07-15T21:55:57,762 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:55:57,762 /usr/local/include 2021-07-15T21:55:57,762 /usr/include/arm-linux-gnueabihf 2021-07-15T21:55:57,762 /usr/include 2021-07-15T21:55:57,763 End of search list. 2021-07-15T21:55:57,763 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:55:57,763 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:55:57,763 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:55:57,775 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:55:59,435 In file included from include/openbabel/atom.h:33, 2021-07-15T21:55:59,435 from include/openbabel/mol.h:43, 2021-07-15T21:55:59,435 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T21:55:59,436 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:55:59,436 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:55:59,436 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:55:59,436 | ^ 2021-07-15T21:55:59,437 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:55:59,437 37 | # define UNUSED(x) x 2021-07-15T21:55:59,437 | ^ 2021-07-15T21:56:00,235 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:00,235 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T21:56:00,235 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:00,235 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:00,236 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:00,236 | ^ 2021-07-15T21:56:00,236 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:00,236 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:00,236 | ^~~~~~~~ 2021-07-15T21:56:00,245 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:00,245 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:00,245 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:00,246 | ^ 2021-07-15T21:56:00,246 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:00,246 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:00,246 | ^~~~~~~~ 2021-07-15T21:56:00,265 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:00,265 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:00,266 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:00,266 | ^ 2021-07-15T21:56:00,266 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:00,266 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:00,267 | ^~~~~~~~ 2021-07-15T21:56:00,267 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:00,267 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T21:56:00,267 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:00,268 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:00,268 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:00,268 | ^ 2021-07-15T21:56:00,268 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:00,269 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:00,269 | ^~~~~~~~ 2021-07-15T21:56:00,716 ./src/descriptors/groupcontrib.cpp: In member function ‘virtual double OpenBabel::OBGroupContrib::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T21:56:00,716 ./src/descriptors/groupcontrib.cpp:106:55: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:56:00,716 106 | double OBGroupContrib::Predict(OBBase* pOb, string* param) 2021-07-15T21:56:00,716 | ~~~~~~~~^~~~~ 2021-07-15T21:56:03,461 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:56:03,461 from ./src/descriptors/groupcontrib.cpp:25: 2021-07-15T21:56:03,462 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T21:56:03,462 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T21:56:03,462 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:56:03,462 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:03,604 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBGroupContrib::ParseFile()’: 2021-07-15T21:56:03,604 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:56:03,604 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:56:03,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:03,605 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T21:56:03,605 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:56:03,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:05,014 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:05,014 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o /tmp/cctKwCqI.s 2021-07-15T21:56:05,020 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:05,389 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:05,389 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:05,389 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:05,395 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/smartsdescriptors.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:05,403 Using built-in specs. 2021-07-15T21:56:05,405 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:05,405 Target: arm-linux-gnueabihf 2021-07-15T21:56:05,405 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:05,405 Thread model: posix 2021-07-15T21:56:05,406 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:05,406 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:05,406 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:05,406 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/smartsdescriptors.cpp -quiet -dumpbase smartsdescriptors.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccVYG027.s 2021-07-15T21:56:05,419 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:05,420 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:05,420 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:05,420 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:05,420 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:05,420 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:05,421 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:05,421 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:05,421 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:05,421 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:05,422 #include "..." search starts here: 2021-07-15T21:56:05,422 #include <...> search starts here: 2021-07-15T21:56:05,422 /usr/include/eigen3 2021-07-15T21:56:05,422 include 2021-07-15T21:56:05,422 /usr/include/python3.9 2021-07-15T21:56:05,422 /usr/include/c++/10 2021-07-15T21:56:05,423 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:05,423 /usr/include/c++/10/backward 2021-07-15T21:56:05,423 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:05,423 /usr/local/include 2021-07-15T21:56:05,423 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:05,424 /usr/include 2021-07-15T21:56:05,424 End of search list. 2021-07-15T21:56:05,424 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:05,424 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:05,425 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:05,437 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:07,046 In file included from include/openbabel/atom.h:33, 2021-07-15T21:56:07,046 from include/openbabel/mol.h:43, 2021-07-15T21:56:07,047 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T21:56:07,047 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:56:07,047 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:56:07,047 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:56:07,048 | ^ 2021-07-15T21:56:07,048 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:56:07,048 37 | # define UNUSED(x) x 2021-07-15T21:56:07,048 | ^ 2021-07-15T21:56:07,764 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:07,764 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T21:56:07,764 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:07,765 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:07,765 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:07,765 | ^ 2021-07-15T21:56:07,766 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:07,766 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:07,766 | ^~~~~~~~ 2021-07-15T21:56:07,769 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:07,769 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:07,769 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:07,769 | ^ 2021-07-15T21:56:07,769 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:07,770 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:07,770 | ^~~~~~~~ 2021-07-15T21:56:07,787 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:07,788 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:07,788 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:07,788 | ^ 2021-07-15T21:56:07,788 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:07,789 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:07,789 | ^~~~~~~~ 2021-07-15T21:56:07,793 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:07,793 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T21:56:07,793 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:07,794 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:07,794 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:07,794 | ^ 2021-07-15T21:56:07,794 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:07,795 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:07,795 | ^~~~~~~~ 2021-07-15T21:56:08,013 ./src/descriptors/smartsdescriptors.cpp: In member function ‘virtual double OpenBabel::SmartsDescriptor::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T21:56:08,013 ./src/descriptors/smartsdescriptors.cpp:48:41: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T21:56:08,014 48 | double Predict(OBBase* pOb, string* param=NULL) 2021-07-15T21:56:08,014 | ^ 2021-07-15T21:56:10,206 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:10,206 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o /tmp/ccVYG027.s 2021-07-15T21:56:10,212 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:10,360 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:10,360 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:10,360 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:10,362 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/distgeom.cpp -o build/temp.linux-armv7l-3.9/./src/distgeom.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:10,370 Using built-in specs. 2021-07-15T21:56:10,371 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:10,371 Target: arm-linux-gnueabihf 2021-07-15T21:56:10,371 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:10,372 Thread model: posix 2021-07-15T21:56:10,372 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:10,372 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:10,372 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:10,372 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/distgeom.cpp -quiet -dumpbase distgeom.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/distgeom.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cckqHiKl.s 2021-07-15T21:56:10,385 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:10,386 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:10,386 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:10,386 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:10,386 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:10,387 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:10,387 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:10,387 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:10,387 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:10,387 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:10,387 #include "..." search starts here: 2021-07-15T21:56:10,388 #include <...> search starts here: 2021-07-15T21:56:10,388 /usr/include/eigen3 2021-07-15T21:56:10,388 include 2021-07-15T21:56:10,388 /usr/include/python3.9 2021-07-15T21:56:10,388 /usr/include/c++/10 2021-07-15T21:56:10,388 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:10,388 /usr/include/c++/10/backward 2021-07-15T21:56:10,389 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:10,389 /usr/local/include 2021-07-15T21:56:10,389 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:10,389 /usr/include 2021-07-15T21:56:10,389 End of search list. 2021-07-15T21:56:10,389 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:10,389 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:10,390 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:10,407 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:11,009 ./src/distgeom.cpp:37: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 2021-07-15T21:56:11,009 37 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data 2021-07-15T21:56:11,009 | 2021-07-15T21:56:11,010 ./src/distgeom.cpp:38: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 2021-07-15T21:56:11,010 38 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' 2021-07-15T21:56:11,010 | 2021-07-15T21:56:11,012 ./src/distgeom.cpp:524:3: warning: multi-line comment [-Wcomment] 2021-07-15T21:56:11,012 524 | // \ 2021-07-15T21:56:11,012 | ^ 2021-07-15T21:56:11,014 ./src/distgeom.cpp:881:9: warning: multi-line comment [-Wcomment] 2021-07-15T21:56:11,014 881 | // / \ 2021-07-15T21:56:11,014 | ^ 2021-07-15T21:56:12,572 In file included from include/openbabel/atom.h:33, 2021-07-15T21:56:12,573 from include/openbabel/mol.h:43, 2021-07-15T21:56:12,573 from include/openbabel/distgeom.h:24, 2021-07-15T21:56:12,573 from ./src/distgeom.cpp:20: 2021-07-15T21:56:12,573 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:56:12,573 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:56:12,574 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:56:12,574 | ^ 2021-07-15T21:56:12,574 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:56:12,574 37 | # define UNUSED(x) x 2021-07-15T21:56:12,574 | ^ 2021-07-15T21:56:13,560 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:13,560 from include/openbabel/distgeom.h:24, 2021-07-15T21:56:13,560 from ./src/distgeom.cpp:20: 2021-07-15T21:56:13,560 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:13,560 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:13,561 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:13,561 | ^ 2021-07-15T21:56:13,561 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:13,561 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:13,561 | ^~~~~~~~ 2021-07-15T21:56:13,564 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:13,565 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:13,565 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:13,565 | ^ 2021-07-15T21:56:13,565 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:13,565 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:13,565 | ^~~~~~~~ 2021-07-15T21:56:13,587 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:13,588 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:13,588 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:13,588 | ^ 2021-07-15T21:56:13,588 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:13,588 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:13,589 | ^~~~~~~~ 2021-07-15T21:56:13,594 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:13,594 from include/openbabel/distgeom.h:24, 2021-07-15T21:56:13,594 from ./src/distgeom.cpp:20: 2021-07-15T21:56:13,594 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:13,594 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:13,595 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:13,595 | ^ 2021-07-15T21:56:13,595 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:13,595 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:13,595 | ^~~~~~~~ 2021-07-15T21:56:15,363 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::Set14Bounds()’: 2021-07-15T21:56:15,364 ./src/distgeom.cpp:479:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,364 479 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T21:56:15,364 ./src/distgeom.cpp:479:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,364 479 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T21:56:15,365 ./src/distgeom.cpp:486:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,365 486 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T21:56:15,365 ./src/distgeom.cpp:486:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,365 486 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T21:56:15,366 ./src/distgeom.cpp:500:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,366 500 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T21:56:15,366 ./src/distgeom.cpp:500:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,367 500 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T21:56:15,367 ./src/distgeom.cpp:506:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,367 506 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T21:56:15,368 ./src/distgeom.cpp:506:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:56:15,368 506 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T21:56:15,368 ./src/distgeom.cpp:386:18: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-15T21:56:15,368 386 | unsigned int i, j; 2021-07-15T21:56:15,368 | ^ 2021-07-15T21:56:15,368 ./src/distgeom.cpp:386:21: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-15T21:56:15,369 386 | unsigned int i, j; 2021-07-15T21:56:15,369 | ^ 2021-07-15T21:56:15,369 ./src/distgeom.cpp:426:19: warning: unused variable ‘bond_id’ [-Wunused-variable] 2021-07-15T21:56:15,369 426 | OBStereo::Ref bond_id; 2021-07-15T21:56:15,369 | ^~~~~~~ 2021-07-15T21:56:15,377 ./src/distgeom.cpp: In member function ‘OpenBabel::OBCisTransStereo* OpenBabel::OBDistanceGeometry::GetCisTransStereo(OpenBabel::OBBond*)’: 2021-07-15T21:56:15,377 ./src/distgeom.cpp:584:19: warning: unused variable ‘bond_id’ [-Wunused-variable] 2021-07-15T21:56:15,377 584 | OBStereo::Ref bond_id; 2021-07-15T21:56:15,378 | ^~~~~~~ 2021-07-15T21:56:15,387 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::Set15Bounds()’: 2021-07-15T21:56:15,387 ./src/distgeom.cpp:614:18: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-15T21:56:15,388 614 | unsigned int i, j; 2021-07-15T21:56:15,388 | ^ 2021-07-15T21:56:15,388 ./src/distgeom.cpp:614:21: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-15T21:56:15,388 614 | unsigned int i, j; 2021-07-15T21:56:15,388 | ^ 2021-07-15T21:56:15,397 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::TriangleSmooth(int)’: 2021-07-15T21:56:15,397 ./src/distgeom.cpp:745:9: warning: unused variable ‘loopCount’ [-Wunused-variable] 2021-07-15T21:56:15,398 745 | int loopCount = 0; 2021-07-15T21:56:15,398 | ^~~~~~~~~ 2021-07-15T21:56:15,398 ./src/distgeom.cpp:742:47: warning: unused parameter ‘iterations’ [-Wunused-parameter] 2021-07-15T21:56:15,398 742 | void OBDistanceGeometry::TriangleSmooth(int iterations) 2021-07-15T21:56:15,398 | ~~~~^~~~~~~~~~ 2021-07-15T21:56:15,492 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::AddConformer()’: 2021-07-15T21:56:15,493 ./src/distgeom.cpp:1105:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:56:15,493 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T21:56:15,493 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T21:56:15,493 ./src/distgeom.cpp:1105:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:56:15,493 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T21:56:15,494 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T21:56:15,494 ./src/distgeom.cpp:1105:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:56:15,494 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T21:56:15,494 | ~~~~~~~~~~~~^~~~~~~~ 2021-07-15T21:56:15,499 ./src/distgeom.cpp:1039:18: warning: unused variable ‘attempts’ [-Wunused-variable] 2021-07-15T21:56:15,500 1039 | unsigned int attempts = 0; 2021-07-15T21:56:15,500 | ^~~~~~~~ 2021-07-15T21:56:28,508 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:28,508 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/distgeom.o /tmp/cckqHiKl.s 2021-07-15T21:56:28,514 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:29,696 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:29,696 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:29,696 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:29,701 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/doxygen_pages.cpp -o build/temp.linux-armv7l-3.9/./src/doxygen_pages.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:29,712 Using built-in specs. 2021-07-15T21:56:29,714 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:29,714 Target: arm-linux-gnueabihf 2021-07-15T21:56:29,714 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:29,714 Thread model: posix 2021-07-15T21:56:29,714 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:29,714 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:29,715 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:29,715 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/doxygen_pages.cpp -quiet -dumpbase doxygen_pages.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/doxygen_pages.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccACdheE.s 2021-07-15T21:56:29,728 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:29,728 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:29,729 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:29,730 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:29,730 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:29,730 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:29,731 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:29,731 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:29,731 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:29,731 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:29,731 #include "..." search starts here: 2021-07-15T21:56:29,732 #include <...> search starts here: 2021-07-15T21:56:29,732 /usr/include/eigen3 2021-07-15T21:56:29,732 include 2021-07-15T21:56:29,732 /usr/include/python3.9 2021-07-15T21:56:29,732 /usr/include/c++/10 2021-07-15T21:56:29,732 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:29,733 /usr/include/c++/10/backward 2021-07-15T21:56:29,733 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:29,733 /usr/local/include 2021-07-15T21:56:29,733 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:29,733 /usr/include 2021-07-15T21:56:29,734 End of search list. 2021-07-15T21:56:29,734 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:29,734 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:29,734 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:29,747 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:29,767 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:29,767 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/doxygen_pages.o /tmp/ccACdheE.s 2021-07-15T21:56:29,772 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:29,787 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:29,787 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:29,787 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:29,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprint.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprint.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:29,797 Using built-in specs. 2021-07-15T21:56:29,798 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:29,798 Target: arm-linux-gnueabihf 2021-07-15T21:56:29,798 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:29,798 Thread model: posix 2021-07-15T21:56:29,798 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:29,799 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:29,799 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:29,799 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprint.cpp -quiet -dumpbase fingerprint.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprint.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccstLbBO.s 2021-07-15T21:56:29,813 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:29,813 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:29,813 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:29,813 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:29,813 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:29,814 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:29,814 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:29,814 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:29,814 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:29,814 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:29,814 #include "..." search starts here: 2021-07-15T21:56:29,814 #include <...> search starts here: 2021-07-15T21:56:29,815 /usr/include/eigen3 2021-07-15T21:56:29,815 include 2021-07-15T21:56:29,815 /usr/include/python3.9 2021-07-15T21:56:29,815 /usr/include/c++/10 2021-07-15T21:56:29,815 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:29,815 /usr/include/c++/10/backward 2021-07-15T21:56:29,815 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:29,816 /usr/local/include 2021-07-15T21:56:29,816 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:29,816 /usr/include 2021-07-15T21:56:29,816 End of search list. 2021-07-15T21:56:29,816 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:29,817 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:29,817 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:29,835 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:31,964 ./src/fingerprint.cpp: In member function ‘bool OpenBabel::FastSearch::Find(OpenBabel::OBBase*, std::vector&, unsigned int)’: 2021-07-15T21:56:31,964 ./src/fingerprint.cpp:161:48: warning: operation on ‘ppat’ may be undefined [-Wsequence-point] 2021-07-15T21:56:31,964 161 | if ( (a=((*ppat) & (*p++)) ^ (*ppat++)) ) break; 2021-07-15T21:56:31,965 | ~~~~^~ 2021-07-15T21:56:31,965 ./src/fingerprint.cpp:161:48: warning: operation on ‘ppat’ may be undefined [-Wsequence-point] 2021-07-15T21:56:35,159 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:35,159 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprint.o /tmp/ccstLbBO.s 2021-07-15T21:56:35,169 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:35,504 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:35,504 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:35,504 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:35,506 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/finger2.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:35,516 Using built-in specs. 2021-07-15T21:56:35,517 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:35,517 Target: arm-linux-gnueabihf 2021-07-15T21:56:35,517 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:35,518 Thread model: posix 2021-07-15T21:56:35,518 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:35,518 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:35,518 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:35,519 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/finger2.cpp -quiet -dumpbase finger2.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccsUeJ04.s 2021-07-15T21:56:35,532 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:35,532 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:35,533 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:35,533 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:35,533 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:35,534 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:35,534 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:35,534 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:35,535 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:35,535 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:35,535 #include "..." search starts here: 2021-07-15T21:56:35,535 #include <...> search starts here: 2021-07-15T21:56:35,535 /usr/include/eigen3 2021-07-15T21:56:35,536 include 2021-07-15T21:56:35,536 /usr/include/python3.9 2021-07-15T21:56:35,536 /usr/include/c++/10 2021-07-15T21:56:35,536 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:35,537 /usr/include/c++/10/backward 2021-07-15T21:56:35,537 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:35,537 /usr/local/include 2021-07-15T21:56:35,537 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:35,538 /usr/include 2021-07-15T21:56:35,538 End of search list. 2021-07-15T21:56:35,538 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:35,538 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:35,539 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:35,553 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:37,462 In file included from include/openbabel/atom.h:33, 2021-07-15T21:56:37,462 from include/openbabel/mol.h:43, 2021-07-15T21:56:37,463 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T21:56:37,463 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:56:37,463 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:56:37,464 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:56:37,464 | ^ 2021-07-15T21:56:37,464 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:56:37,464 37 | # define UNUSED(x) x 2021-07-15T21:56:37,465 | ^ 2021-07-15T21:56:38,344 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:38,344 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T21:56:38,345 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:38,345 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:38,345 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:38,345 | ^ 2021-07-15T21:56:38,345 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:38,345 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:38,346 | ^~~~~~~~ 2021-07-15T21:56:38,348 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:38,348 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:38,348 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:38,348 | ^ 2021-07-15T21:56:38,349 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:38,349 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:38,349 | ^~~~~~~~ 2021-07-15T21:56:38,365 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:38,365 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:38,365 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:38,365 | ^ 2021-07-15T21:56:38,365 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:38,365 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:38,366 | ^~~~~~~~ 2021-07-15T21:56:38,369 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:38,369 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T21:56:38,370 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:38,370 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:38,370 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:38,370 | ^ 2021-07-15T21:56:38,370 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:38,370 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:38,371 | ^~~~~~~~ 2021-07-15T21:56:38,653 ./src/fingerprints/finger2.cpp: In member function ‘virtual std::string OpenBabel::fingerprint2::DescribeBits(std::vector, bool)’: 2021-07-15T21:56:38,653 ./src/fingerprints/finger2.cpp:63:68: warning: unused parameter ‘fp’ [-Wunused-parameter] 2021-07-15T21:56:38,654 63 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T21:56:38,654 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2021-07-15T21:56:38,654 ./src/fingerprints/finger2.cpp:63:77: warning: unused parameter ‘bSet’ [-Wunused-parameter] 2021-07-15T21:56:38,654 63 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T21:56:38,655 | ~~~~~^~~~~~~~~ 2021-07-15T21:56:44,258 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:44,258 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o /tmp/ccsUeJ04.s 2021-07-15T21:56:44,271 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:44,734 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:44,734 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:44,734 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:44,737 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/finger3.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:44,745 Using built-in specs. 2021-07-15T21:56:44,747 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:44,747 Target: arm-linux-gnueabihf 2021-07-15T21:56:44,747 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:44,747 Thread model: posix 2021-07-15T21:56:44,748 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:44,748 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:44,748 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:44,748 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/finger3.cpp -quiet -dumpbase finger3.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRU5Sjq.s 2021-07-15T21:56:44,761 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:44,761 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:44,762 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:44,762 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:44,762 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:44,762 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:44,763 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:44,763 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:44,763 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:44,763 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:44,764 #include "..." search starts here: 2021-07-15T21:56:44,764 #include <...> search starts here: 2021-07-15T21:56:44,764 /usr/include/eigen3 2021-07-15T21:56:44,764 include 2021-07-15T21:56:44,764 /usr/include/python3.9 2021-07-15T21:56:44,764 /usr/include/c++/10 2021-07-15T21:56:44,764 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:44,765 /usr/include/c++/10/backward 2021-07-15T21:56:44,765 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:44,765 /usr/local/include 2021-07-15T21:56:44,765 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:44,765 /usr/include 2021-07-15T21:56:44,765 End of search list. 2021-07-15T21:56:44,766 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:44,766 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:44,766 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:44,782 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:46,702 In file included from include/openbabel/atom.h:33, 2021-07-15T21:56:46,703 from include/openbabel/mol.h:43, 2021-07-15T21:56:46,703 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T21:56:46,703 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:56:46,703 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:56:46,703 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:56:46,703 | ^ 2021-07-15T21:56:46,704 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:56:46,704 37 | # define UNUSED(x) x 2021-07-15T21:56:46,704 | ^ 2021-07-15T21:56:47,686 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:47,686 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T21:56:47,686 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:47,687 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:47,687 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:47,687 | ^ 2021-07-15T21:56:47,687 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:47,687 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:47,687 | ^~~~~~~~ 2021-07-15T21:56:47,691 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:47,691 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:47,691 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:47,691 | ^ 2021-07-15T21:56:47,691 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:47,692 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:47,692 | ^~~~~~~~ 2021-07-15T21:56:47,714 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:47,714 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:47,714 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:47,714 | ^ 2021-07-15T21:56:47,714 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:47,715 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:47,715 | ^~~~~~~~ 2021-07-15T21:56:47,720 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:47,720 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T21:56:47,720 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:47,720 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:47,721 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:47,721 | ^ 2021-07-15T21:56:47,721 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:47,721 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:47,721 | ^~~~~~~~ 2021-07-15T21:56:48,039 ./src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: 2021-07-15T21:56:48,039 ./src/fingerprints/finger3.cpp:108:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:56:48,039 108 | while(n < _bitcount) 2021-07-15T21:56:48,039 | ~~^~~~~~~~~~~ 2021-07-15T21:56:48,065 ./src/fingerprints/finger3.cpp: In member function ‘virtual std::string OpenBabel::PatternFP::DescribeBits(std::vector, bool)’: 2021-07-15T21:56:48,066 ./src/fingerprints/finger3.cpp:257:34: warning: operation on ‘div’ may be undefined [-Wsequence-point] 2021-07-15T21:56:48,066 257 | ngrp = (num + div -1)/div--; //rounds up 2021-07-15T21:56:48,066 | ~~~^~ 2021-07-15T21:56:48,066 ./src/fingerprints/finger3.cpp:257:34: warning: operation on ‘div’ may be undefined [-Wsequence-point] 2021-07-15T21:56:54,613 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:54,614 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o /tmp/ccRU5Sjq.s 2021-07-15T21:56:54,619 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:56:55,217 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:56:55,217 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:56:55,218 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:55,221 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/fingerecfp.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:56:55,230 Using built-in specs. 2021-07-15T21:56:55,231 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:56:55,232 Target: arm-linux-gnueabihf 2021-07-15T21:56:55,232 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:56:55,232 Thread model: posix 2021-07-15T21:56:55,232 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:56:55,232 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:56:55,233 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:56:55,233 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/fingerecfp.cpp -quiet -dumpbase fingerecfp.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc2yuLlG.s 2021-07-15T21:56:55,247 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:55,247 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:55,248 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:55,248 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:56:55,249 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:56:55,249 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:56:55,249 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:56:55,249 ignoring duplicate directory "/usr/include/" 2021-07-15T21:56:55,249 as it is a non-system directory that duplicates a system directory 2021-07-15T21:56:55,249 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:56:55,250 #include "..." search starts here: 2021-07-15T21:56:55,250 #include <...> search starts here: 2021-07-15T21:56:55,250 /usr/include/eigen3 2021-07-15T21:56:55,250 include 2021-07-15T21:56:55,250 /usr/include/python3.9 2021-07-15T21:56:55,250 /usr/include/c++/10 2021-07-15T21:56:55,250 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:56:55,251 /usr/include/c++/10/backward 2021-07-15T21:56:55,251 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:56:55,251 /usr/local/include 2021-07-15T21:56:55,251 /usr/include/arm-linux-gnueabihf 2021-07-15T21:56:55,251 /usr/include 2021-07-15T21:56:55,251 End of search list. 2021-07-15T21:56:55,251 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:56:55,252 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:56:55,252 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:56:55,269 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:56:56,871 In file included from include/openbabel/atom.h:33, 2021-07-15T21:56:56,872 from include/openbabel/mol.h:43, 2021-07-15T21:56:56,872 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T21:56:56,872 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:56:56,872 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:56:56,872 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:56:56,872 | ^ 2021-07-15T21:56:56,873 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:56:56,873 37 | # define UNUSED(x) x 2021-07-15T21:56:56,873 | ^ 2021-07-15T21:56:57,665 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:57,665 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T21:56:57,665 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:57,666 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:57,666 862 | {return new OBVibrationData(*this);} 2021-07-15T21:56:57,666 | ^ 2021-07-15T21:56:57,666 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:56:57,666 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:56:57,666 | ^~~~~~~~ 2021-07-15T21:56:57,669 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:57,669 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:57,670 907 | {return new OBDOSData(*this);} 2021-07-15T21:56:57,670 | ^ 2021-07-15T21:56:57,670 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:56:57,670 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:56:57,670 | ^~~~~~~~ 2021-07-15T21:56:57,688 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:57,688 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:57,688 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:56:57,689 | ^ 2021-07-15T21:56:57,689 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:56:57,689 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:56:57,689 | ^~~~~~~~ 2021-07-15T21:56:57,693 In file included from include/openbabel/mol.h:52, 2021-07-15T21:56:57,694 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T21:56:57,694 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:56:57,694 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:56:57,694 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:56:57,694 | ^ 2021-07-15T21:56:57,694 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:56:57,694 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:56:57,695 | ^~~~~~~~ 2021-07-15T21:56:57,932 ./src/fingerprints/fingerecfp.cpp: In member function ‘virtual std::string OpenBabel::fingerprintECFP::DescribeBits(std::vector, bool)’: 2021-07-15T21:56:57,932 ./src/fingerprints/fingerecfp.cpp:43:70: warning: unused parameter ‘fp’ [-Wunused-parameter] 2021-07-15T21:56:57,932 43 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T21:56:57,933 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2021-07-15T21:56:57,933 ./src/fingerprints/fingerecfp.cpp:43:79: warning: unused parameter ‘bSet’ [-Wunused-parameter] 2021-07-15T21:56:57,933 43 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T21:56:57,933 | ~~~~~^~~~~~~~~ 2021-07-15T21:56:59,298 ./src/fingerprints/fingerecfp.cpp: In function ‘unsigned int OpenBabel::ECFPHash(unsigned char*, unsigned int)’: 2021-07-15T21:56:59,298 ./src/fingerprints/fingerecfp.cpp:105:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,298 105 | case 11: c += ((unsigned int)ptr[10]<<24); 2021-07-15T21:56:59,299 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,299 ./src/fingerprints/fingerecfp.cpp:106:3: note: here 2021-07-15T21:56:59,299 106 | case 10: c += ((unsigned int)ptr[9]<<16); 2021-07-15T21:56:59,299 | ^~~~ 2021-07-15T21:56:59,299 ./src/fingerprints/fingerecfp.cpp:106:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,299 106 | case 10: c += ((unsigned int)ptr[9]<<16); 2021-07-15T21:56:59,299 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,299 ./src/fingerprints/fingerecfp.cpp:107:3: note: here 2021-07-15T21:56:59,300 107 | case 9: c += ((unsigned int)ptr[8]<<8); 2021-07-15T21:56:59,300 | ^~~~ 2021-07-15T21:56:59,300 ./src/fingerprints/fingerecfp.cpp:107:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,300 107 | case 9: c += ((unsigned int)ptr[8]<<8); 2021-07-15T21:56:59,300 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,300 ./src/fingerprints/fingerecfp.cpp:108:3: note: here 2021-07-15T21:56:59,300 108 | case 8: b += ((unsigned int)ptr[7]<<24); 2021-07-15T21:56:59,300 | ^~~~ 2021-07-15T21:56:59,301 ./src/fingerprints/fingerecfp.cpp:108:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,301 108 | case 8: b += ((unsigned int)ptr[7]<<24); 2021-07-15T21:56:59,301 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,301 ./src/fingerprints/fingerecfp.cpp:109:3: note: here 2021-07-15T21:56:59,301 109 | case 7: b += ((unsigned int)ptr[6]<<16); 2021-07-15T21:56:59,301 | ^~~~ 2021-07-15T21:56:59,301 ./src/fingerprints/fingerecfp.cpp:109:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,301 109 | case 7: b += ((unsigned int)ptr[6]<<16); 2021-07-15T21:56:59,302 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,302 ./src/fingerprints/fingerecfp.cpp:110:3: note: here 2021-07-15T21:56:59,302 110 | case 6: b += ((unsigned int)ptr[5]<<8); 2021-07-15T21:56:59,302 | ^~~~ 2021-07-15T21:56:59,302 ./src/fingerprints/fingerecfp.cpp:110:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,302 110 | case 6: b += ((unsigned int)ptr[5]<<8); 2021-07-15T21:56:59,302 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,302 ./src/fingerprints/fingerecfp.cpp:111:3: note: here 2021-07-15T21:56:59,303 111 | case 5: b += ptr[4]; 2021-07-15T21:56:59,303 | ^~~~ 2021-07-15T21:56:59,303 ./src/fingerprints/fingerecfp.cpp:111:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,303 111 | case 5: b += ptr[4]; 2021-07-15T21:56:59,303 | ~~^~~~~~~~~ 2021-07-15T21:56:59,303 ./src/fingerprints/fingerecfp.cpp:112:3: note: here 2021-07-15T21:56:59,303 112 | case 4: a += ((unsigned int)ptr[3]<<24); 2021-07-15T21:56:59,303 | ^~~~ 2021-07-15T21:56:59,303 ./src/fingerprints/fingerecfp.cpp:112:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,304 112 | case 4: a += ((unsigned int)ptr[3]<<24); 2021-07-15T21:56:59,304 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,304 ./src/fingerprints/fingerecfp.cpp:113:3: note: here 2021-07-15T21:56:59,304 113 | case 3: a += ((unsigned int)ptr[2]<<16); 2021-07-15T21:56:59,304 | ^~~~ 2021-07-15T21:56:59,304 ./src/fingerprints/fingerecfp.cpp:113:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,304 113 | case 3: a += ((unsigned int)ptr[2]<<16); 2021-07-15T21:56:59,305 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,305 ./src/fingerprints/fingerecfp.cpp:114:3: note: here 2021-07-15T21:56:59,305 114 | case 2: a += ((unsigned int)ptr[1]<<8); 2021-07-15T21:56:59,305 | ^~~~ 2021-07-15T21:56:59,305 ./src/fingerprints/fingerecfp.cpp:114:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,305 114 | case 2: a += ((unsigned int)ptr[1]<<8); 2021-07-15T21:56:59,305 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:56:59,305 ./src/fingerprints/fingerecfp.cpp:115:3: note: here 2021-07-15T21:56:59,306 115 | case 1: a += ptr[0]; 2021-07-15T21:56:59,306 | ^~~~ 2021-07-15T21:56:59,315 ./src/fingerprints/fingerecfp.cpp: In function ‘unsigned int OpenBabel::ECFPHash(std::vector&)’: 2021-07-15T21:56:59,315 ./src/fingerprints/fingerecfp.cpp:139:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:56:59,315 139 | case 2: b += v[i+1]; 2021-07-15T21:56:59,315 ./src/fingerprints/fingerecfp.cpp:140:3: note: here 2021-07-15T21:56:59,315 140 | case 1: a += v[i]; 2021-07-15T21:56:59,316 | ^~~~ 2021-07-15T21:57:01,970 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:01,971 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o /tmp/cc2yuLlG.s 2021-07-15T21:57:01,979 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:57:02,301 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:57:02,301 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:57:02,301 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:02,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefield.cpp -o build/temp.linux-armv7l-3.9/./src/forcefield.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:57:02,312 Using built-in specs. 2021-07-15T21:57:02,313 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:57:02,313 Target: arm-linux-gnueabihf 2021-07-15T21:57:02,313 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:57:02,314 Thread model: posix 2021-07-15T21:57:02,314 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:57:02,314 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:57:02,314 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:02,315 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefield.cpp -quiet -dumpbase forcefield.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefield.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc5JvbM9.s 2021-07-15T21:57:02,325 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:02,326 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:02,326 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:02,326 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:57:02,326 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:57:02,327 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:57:02,327 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:57:02,327 ignoring duplicate directory "/usr/include/" 2021-07-15T21:57:02,327 as it is a non-system directory that duplicates a system directory 2021-07-15T21:57:02,327 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:57:02,328 #include "..." search starts here: 2021-07-15T21:57:02,328 #include <...> search starts here: 2021-07-15T21:57:02,328 /usr/include/eigen3 2021-07-15T21:57:02,328 include 2021-07-15T21:57:02,328 /usr/include/python3.9 2021-07-15T21:57:02,328 /usr/include/c++/10 2021-07-15T21:57:02,328 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:57:02,329 /usr/include/c++/10/backward 2021-07-15T21:57:02,329 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:57:02,329 /usr/local/include 2021-07-15T21:57:02,329 /usr/include/arm-linux-gnueabihf 2021-07-15T21:57:02,329 /usr/include 2021-07-15T21:57:02,329 End of search list. 2021-07-15T21:57:02,329 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:02,330 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:02,330 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:02,342 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:57:03,890 In file included from include/openbabel/forcefield.h:30, 2021-07-15T21:57:03,890 from ./src/forcefield.cpp:22: 2021-07-15T21:57:03,890 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:57:03,891 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:57:03,891 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:57:03,891 | ^ 2021-07-15T21:57:03,891 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:03,891 37 | # define UNUSED(x) x 2021-07-15T21:57:03,891 | ^ 2021-07-15T21:57:04,700 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:04,700 from include/openbabel/forcefield.h:31, 2021-07-15T21:57:04,700 from ./src/forcefield.cpp:22: 2021-07-15T21:57:04,700 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:04,701 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:04,701 862 | {return new OBVibrationData(*this);} 2021-07-15T21:57:04,701 | ^ 2021-07-15T21:57:04,701 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:57:04,701 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:57:04,701 | ^~~~~~~~ 2021-07-15T21:57:04,704 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:04,704 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:04,704 907 | {return new OBDOSData(*this);} 2021-07-15T21:57:04,705 | ^ 2021-07-15T21:57:04,705 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:57:04,705 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:57:04,705 | ^~~~~~~~ 2021-07-15T21:57:04,723 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:04,723 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:04,723 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:57:04,723 | ^ 2021-07-15T21:57:04,723 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:57:04,724 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:57:04,724 | ^~~~~~~~ 2021-07-15T21:57:04,728 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:04,728 from include/openbabel/forcefield.h:31, 2021-07-15T21:57:04,728 from ./src/forcefield.cpp:22: 2021-07-15T21:57:04,729 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:04,729 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:04,729 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:57:04,729 | ^ 2021-07-15T21:57:04,729 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:57:04,729 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:57:04,729 | ^~~~~~~~ 2021-07-15T21:57:05,020 In file included from include/openbabel/forcefield.h:30, 2021-07-15T21:57:05,020 from ./src/forcefield.cpp:22: 2021-07-15T21:57:05,020 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:57:05,020 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,020 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,021 | ^ 2021-07-15T21:57:05,021 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,021 37 | # define UNUSED(x) x 2021-07-15T21:57:05,021 | ^ 2021-07-15T21:57:05,021 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:57:05,021 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,022 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,022 | ^ 2021-07-15T21:57:05,022 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,022 37 | # define UNUSED(x) x 2021-07-15T21:57:05,022 | ^ 2021-07-15T21:57:05,022 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:57:05,022 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,023 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,023 | ^ 2021-07-15T21:57:05,023 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,023 37 | # define UNUSED(x) x 2021-07-15T21:57:05,023 | ^ 2021-07-15T21:57:05,023 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:57:05,023 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,024 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,024 | ^ 2021-07-15T21:57:05,024 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,024 37 | # define UNUSED(x) x 2021-07-15T21:57:05,024 | ^ 2021-07-15T21:57:05,024 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:57:05,024 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,025 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,025 | ^ 2021-07-15T21:57:05,025 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,025 37 | # define UNUSED(x) x 2021-07-15T21:57:05,025 | ^ 2021-07-15T21:57:05,025 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:57:05,025 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,026 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,026 | ^ 2021-07-15T21:57:05,026 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,026 37 | # define UNUSED(x) x 2021-07-15T21:57:05,026 | ^ 2021-07-15T21:57:05,026 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:57:05,026 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,026 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,027 | ^ 2021-07-15T21:57:05,027 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,027 37 | # define UNUSED(x) x 2021-07-15T21:57:05,027 | ^ 2021-07-15T21:57:05,027 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:57:05,027 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:05,027 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:05,028 | ^ 2021-07-15T21:57:05,028 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,028 37 | # define UNUSED(x) x 2021-07-15T21:57:05,028 | ^ 2021-07-15T21:57:05,063 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:57:05,064 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:57:05,064 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:57:05,064 | ^ 2021-07-15T21:57:05,064 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,064 37 | # define UNUSED(x) x 2021-07-15T21:57:05,064 | ^ 2021-07-15T21:57:05,065 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:57:05,065 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:57:05,065 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:57:05,065 | ^ 2021-07-15T21:57:05,066 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:05,066 37 | # define UNUSED(x) x 2021-07-15T21:57:05,066 | ^ 2021-07-15T21:57:05,183 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: 2021-07-15T21:57:05,183 ./src/forcefield.cpp:384:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:57:05,184 384 | if (_ignoreAtom == a) 2021-07-15T21:57:05,184 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:57:05,184 ./src/forcefield.cpp:386:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:57:05,184 386 | if (_ignoreAtom == b) 2021-07-15T21:57:05,184 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:57:05,184 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: 2021-07-15T21:57:05,185 ./src/forcefield.cpp:396:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:57:05,185 396 | if (_ignoreAtom == b) 2021-07-15T21:57:05,185 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:57:05,185 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: 2021-07-15T21:57:05,185 ./src/forcefield.cpp:406:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:57:05,185 406 | if (_ignoreAtom == d) 2021-07-15T21:57:05,185 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:57:05,207 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: 2021-07-15T21:57:05,208 ./src/forcefield.cpp:658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,208 658 | if (index >= _constraints.size()) 2021-07-15T21:57:05,208 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,208 ./src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: 2021-07-15T21:57:05,208 ./src/forcefield.cpp:666:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,208 666 | if (index >= _constraints.size()) 2021-07-15T21:57:05,209 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,209 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: 2021-07-15T21:57:05,209 ./src/forcefield.cpp:674:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,209 674 | if (index >= _constraints.size()) 2021-07-15T21:57:05,209 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,209 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: 2021-07-15T21:57:05,210 ./src/forcefield.cpp:682:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,210 682 | if (index >= _constraints.size()) 2021-07-15T21:57:05,210 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,210 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: 2021-07-15T21:57:05,210 ./src/forcefield.cpp:690:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,210 690 | if (index >= _constraints.size()) 2021-07-15T21:57:05,211 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,211 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: 2021-07-15T21:57:05,211 ./src/forcefield.cpp:698:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,211 698 | if (index >= _constraints.size()) 2021-07-15T21:57:05,211 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,266 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: 2021-07-15T21:57:05,267 ./src/forcefield.cpp:1358:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2021-07-15T21:57:05,267 1358 | num_permutations = factorial[num_rotors_to_permute]; 2021-07-15T21:57:05,267 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:05,267 ./src/forcefield.cpp:1362:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,267 1362 | for (int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:57:05,292 1375 | for (int i=0; i >&, std::vector, double)’: 2021-07-15T21:57:05,313 ./src/forcefield.cpp:1576:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:57:05,314 1576 | if (j == rotorKey[i]) 2021-07-15T21:57:05,314 ./src/forcefield.cpp:1595:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T21:57:05,315 1595 | if (j == rotorKey[i]) 2021-07-15T21:57:05,340 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::DistanceGeometry()’: 2021-07-15T21:57:05,340 ./src/forcefield.cpp:1975:26: warning: variable ‘l_bc’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:57:05,340 1975 | double l_ab, l_bc, l_ac; // lower limits 2021-07-15T21:57:05,340 | ^~~~ 2021-07-15T21:57:05,388 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::SteepestDescentInitialize(int, double, int)’: 2021-07-15T21:57:05,388 ./src/forcefield.cpp:2747:77: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T21:57:05,389 2747 | void OBForceField::SteepestDescentInitialize(int steps, double econv, int method) 2021-07-15T21:57:05,389 | ~~~~^~~~~~ 2021-07-15T21:57:05,397 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::ConjugateGradientsInitialize(int, double, int)’: 2021-07-15T21:57:05,397 ./src/forcefield.cpp:2873:55: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T21:57:05,397 2873 | int method) 2021-07-15T21:57:05,397 | ~~~~^~~~~~ 2021-07-15T21:57:05,431 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::MolecularDynamicsTakeNSteps(int, double, double, int)’: 2021-07-15T21:57:05,431 ./src/forcefield.cpp:3524:88: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T21:57:05,431 3524 | void OBForceField::MolecularDynamicsTakeNSteps(int n, double T, double timestep, int method) 2021-07-15T21:57:05,431 | ~~~~^~~~~~ 2021-07-15T21:57:21,804 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:21,804 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:21,804 from ./src/forcefield.cpp:22: 2021-07-15T21:57:21,804 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFConstraint&}; _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’: 2021-07-15T21:57:21,805 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:21,805 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:21,805 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:21,948 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:21,949 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: 2021-07-15T21:57:21,949 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:21,949 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:21,949 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:21,949 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:21,952 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:21,953 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:21,953 from ./src/forcefield.cpp:22: 2021-07-15T21:57:21,953 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:21,953 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:21,954 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,013 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,013 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddIgnore(int)’: 2021-07-15T21:57:22,014 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,014 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,014 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,014 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,017 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,017 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,017 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,017 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,018 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,018 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,075 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,075 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: 2021-07-15T21:57:22,075 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,075 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,076 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,076 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,078 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,079 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,079 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,079 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,079 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,079 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,138 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,138 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: 2021-07-15T21:57:22,138 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,138 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,139 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,139 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,141 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,142 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,142 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,142 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,142 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,142 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,200 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,200 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: 2021-07-15T21:57:22,201 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,201 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,201 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,201 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,204 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,204 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,204 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,204 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,205 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,205 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,257 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,257 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: 2021-07-15T21:57:22,258 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,258 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,258 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,259 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,259 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,259 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,259 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,260 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,260 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,260 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,305 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,306 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: 2021-07-15T21:57:22,306 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,306 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,307 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,307 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,307 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,308 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,308 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,308 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,308 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:22,354 In file included from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,355 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: 2021-07-15T21:57:22,355 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,355 235 | class OBFPRT OBFFConstraint 2021-07-15T21:57:22,356 | ^~~~~~~~~~~~~~ 2021-07-15T21:57:22,356 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:22,356 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:22,357 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:22,357 from ./src/forcefield.cpp:22: 2021-07-15T21:57:22,357 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:22,357 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:22,358 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:23,160 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: 2021-07-15T21:57:23,161 ./src/forcefield.cpp:1415:11: warning: ‘minE’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:23,161 1415 | if (minE < best_minE) { 2021-07-15T21:57:23,161 | ^~ 2021-07-15T21:57:23,162 ./src/forcefield.cpp:1398:29: warning: ‘minj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:57:23,162 1398 | rotorKey[idx + 1] = minj; 2021-07-15T21:57:23,163 | ^~~~ 2021-07-15T21:57:24,045 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:24,045 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:24,045 from ./src/forcefield.cpp:22: 2021-07-15T21:57:24,045 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:57:24,046 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:24,046 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:24,046 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:24,482 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:24,482 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:24,482 from ./src/forcefield.cpp:22: 2021-07-15T21:57:24,482 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: 2021-07-15T21:57:24,482 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:24,482 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:24,483 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:24,484 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:24,484 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:24,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:24,487 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:24,487 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:24,488 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:25,609 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:25,609 from include/openbabel/forcefield.h:23, 2021-07-15T21:57:25,610 from ./src/forcefield.cpp:22: 2021-07-15T21:57:25,610 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:57:25,610 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:25,610 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:25,610 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:26,059 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)’: 2021-07-15T21:57:26,060 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:26,060 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:26,060 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:27,607 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:27,608 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefield.o /tmp/cc5JvbM9.s 2021-07-15T21:57:27,614 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:57:29,340 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:57:29,341 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:57:29,341 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:29,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldgaff.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:57:29,361 Using built-in specs. 2021-07-15T21:57:29,362 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:57:29,362 Target: arm-linux-gnueabihf 2021-07-15T21:57:29,363 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:57:29,363 Thread model: posix 2021-07-15T21:57:29,363 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:57:29,364 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:57:29,365 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:29,368 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldgaff.cpp -quiet -dumpbase forcefieldgaff.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc820wPt.s 2021-07-15T21:57:29,381 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:29,382 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:29,383 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:29,384 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:57:29,384 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:57:29,384 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:57:29,385 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:57:29,386 ignoring duplicate directory "/usr/include/" 2021-07-15T21:57:29,386 as it is a non-system directory that duplicates a system directory 2021-07-15T21:57:29,386 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:57:29,387 #include "..." search starts here: 2021-07-15T21:57:29,387 #include <...> search starts here: 2021-07-15T21:57:29,387 /usr/include/eigen3 2021-07-15T21:57:29,388 include 2021-07-15T21:57:29,388 /usr/include/python3.9 2021-07-15T21:57:29,388 /usr/include/c++/10 2021-07-15T21:57:29,388 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:57:29,389 /usr/include/c++/10/backward 2021-07-15T21:57:29,389 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:57:29,389 /usr/local/include 2021-07-15T21:57:29,389 /usr/include/arm-linux-gnueabihf 2021-07-15T21:57:29,389 /usr/include 2021-07-15T21:57:29,389 End of search list. 2021-07-15T21:57:29,395 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:29,396 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:29,396 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:29,407 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:57:31,000 In file included from include/openbabel/atom.h:33, 2021-07-15T21:57:31,001 from include/openbabel/mol.h:43, 2021-07-15T21:57:31,001 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:31,001 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:57:31,001 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:57:31,001 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:57:31,001 | ^ 2021-07-15T21:57:31,001 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:31,002 37 | # define UNUSED(x) x 2021-07-15T21:57:31,002 | ^ 2021-07-15T21:57:31,798 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:31,798 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:31,798 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:31,799 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:31,799 862 | {return new OBVibrationData(*this);} 2021-07-15T21:57:31,799 | ^ 2021-07-15T21:57:31,799 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:57:31,799 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:57:31,800 | ^~~~~~~~ 2021-07-15T21:57:31,804 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:31,804 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:31,804 907 | {return new OBDOSData(*this);} 2021-07-15T21:57:31,804 | ^ 2021-07-15T21:57:31,805 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:57:31,805 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:57:31,805 | ^~~~~~~~ 2021-07-15T21:57:31,824 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:31,825 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:31,825 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:57:31,825 | ^ 2021-07-15T21:57:31,825 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:57:31,825 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:57:31,826 | ^~~~~~~~ 2021-07-15T21:57:31,831 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:31,831 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:31,831 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:31,831 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:31,831 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:57:31,831 | ^ 2021-07-15T21:57:31,832 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:57:31,832 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:57:31,832 | ^~~~~~~~ 2021-07-15T21:57:32,298 In file included from include/openbabel/atom.h:33, 2021-07-15T21:57:32,298 from include/openbabel/mol.h:43, 2021-07-15T21:57:32,298 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:32,298 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:57:32,298 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,299 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,299 | ^ 2021-07-15T21:57:32,299 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,299 37 | # define UNUSED(x) x 2021-07-15T21:57:32,299 | ^ 2021-07-15T21:57:32,300 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:57:32,300 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,300 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,300 | ^ 2021-07-15T21:57:32,300 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,300 37 | # define UNUSED(x) x 2021-07-15T21:57:32,300 | ^ 2021-07-15T21:57:32,301 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:57:32,301 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,301 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,301 | ^ 2021-07-15T21:57:32,302 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,302 37 | # define UNUSED(x) x 2021-07-15T21:57:32,302 | ^ 2021-07-15T21:57:32,302 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:57:32,303 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,303 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,303 | ^ 2021-07-15T21:57:32,303 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,303 37 | # define UNUSED(x) x 2021-07-15T21:57:32,303 | ^ 2021-07-15T21:57:32,304 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:57:32,304 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,304 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,304 | ^ 2021-07-15T21:57:32,304 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,304 37 | # define UNUSED(x) x 2021-07-15T21:57:32,305 | ^ 2021-07-15T21:57:32,305 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:57:32,305 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,305 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,306 | ^ 2021-07-15T21:57:32,306 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,306 37 | # define UNUSED(x) x 2021-07-15T21:57:32,306 | ^ 2021-07-15T21:57:32,306 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:57:32,307 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,307 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,307 | ^ 2021-07-15T21:57:32,307 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,307 37 | # define UNUSED(x) x 2021-07-15T21:57:32,307 | ^ 2021-07-15T21:57:32,315 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:57:32,315 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:32,315 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:32,315 | ^ 2021-07-15T21:57:32,316 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:32,316 37 | # define UNUSED(x) x 2021-07-15T21:57:32,316 | ^ 2021-07-15T21:57:40,042 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:40,042 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,042 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,043 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGaff&}; _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,043 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:40,043 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:40,043 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:40,186 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGaff&}; _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,186 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:40,329 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:40,329 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,329 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,329 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,329 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:40,329 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:40,330 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:40,416 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:40,416 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,416 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,416 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGaff&}; _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,416 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:40,417 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:40,417 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:40,601 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:40,602 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,602 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,602 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,602 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:40,602 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:40,602 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:40,702 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:40,702 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,702 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,702 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationGaff&}; _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,702 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:40,703 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:40,703 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:40,889 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:40,889 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,889 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,889 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,890 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:40,890 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:40,890 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:40,979 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:40,979 from include/openbabel/mol.h:35, 2021-07-15T21:57:40,979 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:40,979 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGaff&}; _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:40,979 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:40,979 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:40,980 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:41,114 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGaff&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T21:57:41,114 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:41,766 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:57:41,766 from include/openbabel/mol.h:35, 2021-07-15T21:57:41,766 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:41,766 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’: 2021-07-15T21:57:41,767 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,767 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,767 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:41,768 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,768 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,769 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:41,773 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,773 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,773 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:41,778 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,778 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:41,786 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,786 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,786 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:41,790 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:41,790 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:57:41,790 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:57:43,435 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:57:43,436 from include/openbabel/mol.h:35, 2021-07-15T21:57:43,436 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T21:57:43,436 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:57:43,436 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:57:43,436 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:57:43,436 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,720 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’: 2021-07-15T21:57:46,720 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,721 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,721 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,721 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,722 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,722 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,724 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,724 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,724 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,725 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,725 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,725 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,727 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,727 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,728 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,728 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,728 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,729 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,731 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,731 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,731 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,732 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,732 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,732 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,733 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,733 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,733 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,735 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,735 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,736 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,736 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,736 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,737 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,737 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,737 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,738 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,739 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,740 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,740 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,740 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,741 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,741 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,743 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,743 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,744 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:46,744 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:57:46,744 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:57:46,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:57:51,774 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:51,775 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o /tmp/cc820wPt.s 2021-07-15T21:57:51,779 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:57:53,207 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:57:53,208 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:57:53,208 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:53,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldghemical.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:57:53,223 Using built-in specs. 2021-07-15T21:57:53,225 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:57:53,225 Target: arm-linux-gnueabihf 2021-07-15T21:57:53,226 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:57:53,227 Thread model: posix 2021-07-15T21:57:53,227 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:57:53,228 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:57:53,228 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:57:53,229 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldghemical.cpp -quiet -dumpbase forcefieldghemical.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccz6AxEU.s 2021-07-15T21:57:53,239 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:53,240 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:53,241 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:53,241 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:57:53,242 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:57:53,242 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:57:53,242 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:57:53,243 ignoring duplicate directory "/usr/include/" 2021-07-15T21:57:53,243 as it is a non-system directory that duplicates a system directory 2021-07-15T21:57:53,243 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:57:53,244 #include "..." search starts here: 2021-07-15T21:57:53,244 #include <...> search starts here: 2021-07-15T21:57:53,244 /usr/include/eigen3 2021-07-15T21:57:53,245 include 2021-07-15T21:57:53,245 /usr/include/python3.9 2021-07-15T21:57:53,246 /usr/include/c++/10 2021-07-15T21:57:53,246 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:57:53,246 /usr/include/c++/10/backward 2021-07-15T21:57:53,247 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:57:53,247 /usr/local/include 2021-07-15T21:57:53,247 /usr/include/arm-linux-gnueabihf 2021-07-15T21:57:53,248 /usr/include 2021-07-15T21:57:53,248 End of search list. 2021-07-15T21:57:53,248 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:57:53,249 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:57:53,250 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:57:53,259 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:57:54,869 In file included from include/openbabel/atom.h:33, 2021-07-15T21:57:54,869 from include/openbabel/mol.h:43, 2021-07-15T21:57:54,870 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:57:54,870 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:57:54,870 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:57:54,871 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:57:54,871 | ^ 2021-07-15T21:57:54,872 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:54,872 37 | # define UNUSED(x) x 2021-07-15T21:57:54,872 | ^ 2021-07-15T21:57:55,660 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:55,661 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:57:55,661 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:55,662 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:55,662 862 | {return new OBVibrationData(*this);} 2021-07-15T21:57:55,663 | ^ 2021-07-15T21:57:55,663 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:57:55,663 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:57:55,664 | ^~~~~~~~ 2021-07-15T21:57:55,665 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:55,666 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:55,666 907 | {return new OBDOSData(*this);} 2021-07-15T21:57:55,666 | ^ 2021-07-15T21:57:55,667 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:57:55,667 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:57:55,668 | ^~~~~~~~ 2021-07-15T21:57:55,684 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:55,685 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:55,685 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:57:55,685 | ^ 2021-07-15T21:57:55,686 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:57:55,686 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:57:55,687 | ^~~~~~~~ 2021-07-15T21:57:55,690 In file included from include/openbabel/mol.h:52, 2021-07-15T21:57:55,690 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:57:55,691 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:57:55,691 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:57:55,692 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:57:55,692 | ^ 2021-07-15T21:57:55,692 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:57:55,693 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:57:55,693 | ^~~~~~~~ 2021-07-15T21:57:56,148 In file included from include/openbabel/atom.h:33, 2021-07-15T21:57:56,148 from include/openbabel/mol.h:43, 2021-07-15T21:57:56,148 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:57:56,149 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:57:56,149 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,150 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,150 | ^ 2021-07-15T21:57:56,150 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,151 37 | # define UNUSED(x) x 2021-07-15T21:57:56,151 | ^ 2021-07-15T21:57:56,152 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:57:56,152 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,153 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,153 | ^ 2021-07-15T21:57:56,153 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,154 37 | # define UNUSED(x) x 2021-07-15T21:57:56,154 | ^ 2021-07-15T21:57:56,155 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:57:56,155 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,155 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,156 | ^ 2021-07-15T21:57:56,156 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,157 37 | # define UNUSED(x) x 2021-07-15T21:57:56,157 | ^ 2021-07-15T21:57:56,157 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:57:56,158 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,158 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,159 | ^ 2021-07-15T21:57:56,159 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,160 37 | # define UNUSED(x) x 2021-07-15T21:57:56,160 | ^ 2021-07-15T21:57:56,160 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:57:56,161 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,161 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,162 | ^ 2021-07-15T21:57:56,162 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,163 37 | # define UNUSED(x) x 2021-07-15T21:57:56,163 | ^ 2021-07-15T21:57:56,163 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:57:56,164 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,164 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,164 | ^ 2021-07-15T21:57:56,165 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,165 37 | # define UNUSED(x) x 2021-07-15T21:57:56,166 | ^ 2021-07-15T21:57:56,166 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:57:56,166 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,167 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,167 | ^ 2021-07-15T21:57:56,167 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,168 37 | # define UNUSED(x) x 2021-07-15T21:57:56,168 | ^ 2021-07-15T21:57:56,168 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:57:56,169 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:57:56,169 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:57:56,170 | ^ 2021-07-15T21:57:56,170 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:57:56,170 37 | # define UNUSED(x) x 2021-07-15T21:57:56,170 | ^ 2021-07-15T21:58:03,497 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:03,497 from include/openbabel/mol.h:35, 2021-07-15T21:58:03,497 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:03,497 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGhemical&}; _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:03,497 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:03,498 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:03,498 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:03,641 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGhemical&}; _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:03,641 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:03,781 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:58:03,781 from include/openbabel/mol.h:35, 2021-07-15T21:58:03,782 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:03,782 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:03,782 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:03,782 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:03,782 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:03,874 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:03,874 from include/openbabel/mol.h:35, 2021-07-15T21:58:03,874 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:03,874 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGhemical&}; _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:03,875 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:03,875 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:03,875 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:04,084 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:58:04,084 from include/openbabel/mol.h:35, 2021-07-15T21:58:04,084 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:04,084 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:04,084 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,084 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,085 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,182 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:04,182 from include/openbabel/mol.h:35, 2021-07-15T21:58:04,182 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:04,183 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGhemical&}; _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:04,183 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:04,183 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:04,183 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:04,329 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGhemical&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T21:58:04,329 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:04,926 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:58:04,926 from include/openbabel/mol.h:35, 2021-07-15T21:58:04,927 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:04,927 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’: 2021-07-15T21:58:04,927 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,927 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,927 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,927 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,927 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,928 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,931 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,931 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,931 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,936 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,936 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,936 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,940 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,940 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,940 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:04,944 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:04,944 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:04,944 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:06,526 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:06,526 from include/openbabel/mol.h:35, 2021-07-15T21:58:06,526 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T21:58:06,526 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:58:06,527 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:06,527 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:06,527 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,234 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’: 2021-07-15T21:58:09,234 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,234 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,235 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,235 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,236 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,237 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,238 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,238 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,238 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,239 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,239 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,241 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,242 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,242 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,243 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,243 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:09,244 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:09,245 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:09,245 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:11,934 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:11,934 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o /tmp/ccz6AxEU.s 2021-07-15T21:58:11,939 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:13,390 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:13,391 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:13,391 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:13,400 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldmm2.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:13,407 Using built-in specs. 2021-07-15T21:58:13,408 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:13,409 Target: arm-linux-gnueabihf 2021-07-15T21:58:13,409 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:13,409 Thread model: posix 2021-07-15T21:58:13,410 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:13,410 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:13,410 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:13,411 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldmm2.cpp -quiet -dumpbase forcefieldmm2.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZyQXpk.s 2021-07-15T21:58:13,423 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:13,424 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:13,424 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:13,425 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:13,425 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:13,425 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:13,426 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:13,426 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:13,426 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:13,427 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:13,427 #include "..." search starts here: 2021-07-15T21:58:13,427 #include <...> search starts here: 2021-07-15T21:58:13,427 /usr/include/eigen3 2021-07-15T21:58:13,428 include 2021-07-15T21:58:13,428 /usr/include/python3.9 2021-07-15T21:58:13,428 /usr/include/c++/10 2021-07-15T21:58:13,428 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:13,429 /usr/include/c++/10/backward 2021-07-15T21:58:13,429 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:13,429 /usr/local/include 2021-07-15T21:58:13,429 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:13,430 /usr/include 2021-07-15T21:58:13,430 End of search list. 2021-07-15T21:58:13,430 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:13,430 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:13,431 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:13,443 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:13,820 In file included from ./src/forcefields/forcefieldmm2.cpp:21: 2021-07-15T21:58:13,821 include/forcefields/forcefieldmm2.h:68:57: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:13,821 68 | // b = atom d \ 2021-07-15T21:58:13,821 | ^ 2021-07-15T21:58:13,822 ./src/forcefields/forcefieldmm2.cpp:276:3: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:13,822 276 | // \ 2021-07-15T21:58:13,823 | ^ 2021-07-15T21:58:15,029 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:15,029 from include/openbabel/mol.h:43, 2021-07-15T21:58:15,029 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T21:58:15,030 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:15,030 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:15,030 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:15,031 | ^ 2021-07-15T21:58:15,031 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:15,031 37 | # define UNUSED(x) x 2021-07-15T21:58:15,031 | ^ 2021-07-15T21:58:15,825 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:15,825 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T21:58:15,825 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:15,825 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:15,826 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:15,826 | ^ 2021-07-15T21:58:15,826 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:15,826 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:15,826 | ^~~~~~~~ 2021-07-15T21:58:15,826 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:15,826 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:15,827 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:15,827 | ^ 2021-07-15T21:58:15,827 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:15,827 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:15,827 | ^~~~~~~~ 2021-07-15T21:58:15,841 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:15,842 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:15,842 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:15,842 | ^ 2021-07-15T21:58:15,842 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:15,842 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:15,843 | ^~~~~~~~ 2021-07-15T21:58:15,848 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:15,848 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T21:58:15,849 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:15,849 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:15,849 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:15,849 | ^ 2021-07-15T21:58:15,849 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:15,850 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:15,850 | ^~~~~~~~ 2021-07-15T21:58:16,304 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:16,304 from include/openbabel/mol.h:43, 2021-07-15T21:58:16,304 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T21:58:16,304 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:58:16,304 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,305 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,305 | ^ 2021-07-15T21:58:16,305 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,305 37 | # define UNUSED(x) x 2021-07-15T21:58:16,305 | ^ 2021-07-15T21:58:16,305 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:58:16,306 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,306 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,306 | ^ 2021-07-15T21:58:16,306 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,306 37 | # define UNUSED(x) x 2021-07-15T21:58:16,307 | ^ 2021-07-15T21:58:16,307 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:58:16,307 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,307 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,308 | ^ 2021-07-15T21:58:16,308 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,308 37 | # define UNUSED(x) x 2021-07-15T21:58:16,308 | ^ 2021-07-15T21:58:16,308 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:58:16,309 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,309 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,309 | ^ 2021-07-15T21:58:16,309 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,309 37 | # define UNUSED(x) x 2021-07-15T21:58:16,310 | ^ 2021-07-15T21:58:16,310 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:58:16,310 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,310 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,311 | ^ 2021-07-15T21:58:16,311 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,311 37 | # define UNUSED(x) x 2021-07-15T21:58:16,311 | ^ 2021-07-15T21:58:16,311 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:58:16,312 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,312 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,312 | ^ 2021-07-15T21:58:16,312 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,312 37 | # define UNUSED(x) x 2021-07-15T21:58:16,312 | ^ 2021-07-15T21:58:16,313 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:58:16,313 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,313 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,313 | ^ 2021-07-15T21:58:16,313 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,314 37 | # define UNUSED(x) x 2021-07-15T21:58:16,314 | ^ 2021-07-15T21:58:16,314 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:58:16,314 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:16,314 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:16,315 | ^ 2021-07-15T21:58:16,315 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,315 37 | # define UNUSED(x) x 2021-07-15T21:58:16,315 | ^ 2021-07-15T21:58:16,365 In file included from ./src/forcefields/forcefieldmm2.cpp:21: 2021-07-15T21:58:16,366 include/forcefields/forcefieldmm2.h: In member function ‘virtual OpenBabel::OBForceFieldMM2* OpenBabel::OBForceFieldMM2::MakeNewInstance()’: 2021-07-15T21:58:16,366 include/forcefields/forcefieldmm2.h:97:83: warning: implicitly-declared ‘OpenBabel::OBForceFieldMM2::OBForceFieldMM2(const OpenBabel::OBForceFieldMM2&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:16,366 97 | virtual OBForceFieldMM2* MakeNewInstance(){ return new OBForceFieldMM2(*this); } 2021-07-15T21:58:16,366 | ^ 2021-07-15T21:58:16,366 include/forcefields/forcefieldmm2.h:107:24: note: because ‘OpenBabel::OBForceFieldMM2’ has user-provided ‘OpenBabel::OBForceFieldMM2& OpenBabel::OBForceFieldMM2::operator=(OpenBabel::OBForceFieldMM2&)’ 2021-07-15T21:58:16,366 107 | OBForceFieldMM2 &operator = (OBForceFieldMM2 &); 2021-07-15T21:58:16,367 | ^~~~~~~~ 2021-07-15T21:58:16,375 ./src/forcefields/forcefieldmm2.cpp: In member function ‘double OpenBabel::OBForceFieldMM2::E_Angle()’: 2021-07-15T21:58:16,375 ./src/forcefields/forcefieldmm2.cpp:81:59: warning: variable ‘delta3’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:58:16,375 81 | double e, energy, force, ang, ang_ref, delta, delta2, delta3, delta4, f, dotprod, rab, rab2, rab3, rbc, rbc2, rbc3, root, dotprod_abbc; 2021-07-15T21:58:16,376 | ^~~~~~ 2021-07-15T21:58:16,395 ./src/forcefields/forcefieldmm2.cpp: In member function ‘double OpenBabel::OBForceFieldMM2::E_OOP()’: 2021-07-15T21:58:16,395 ./src/forcefields/forcefieldmm2.cpp:292:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:16,395 292 | for (int idx=0; idx < _ffoutplanebendparams.size(); idx++) { 2021-07-15T21:58:16,396 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:18,166 ./src/forcefields/forcefieldmm2.cpp: In member function ‘OpenBabel::OBForceFieldMM2& OpenBabel::OBForceFieldMM2::operator=(OpenBabel::OBForceFieldMM2&)’: 2021-07-15T21:58:18,167 ./src/forcefields/forcefieldmm2.cpp:503:3: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-15T21:58:18,167 503 | } 2021-07-15T21:58:18,167 | ^ 2021-07-15T21:58:22,479 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:22,479 from include/openbabel/mol.h:35, 2021-07-15T21:58:22,479 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T21:58:22,480 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:58:22,480 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:22,480 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:22,480 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,483 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldMM2::ParseParamFile()’: 2021-07-15T21:58:23,483 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,483 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,484 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,485 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,485 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,487 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,487 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,487 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,488 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,488 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,488 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,490 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,490 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,490 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,492 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,492 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,492 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,493 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,494 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,494 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,495 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,495 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,495 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,496 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,497 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,497 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,498 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,499 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,499 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,500 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,500 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,500 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,501 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,502 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,502 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,503 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,503 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,503 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,504 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,505 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,505 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,505 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:23,506 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:23,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:26,084 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:26,085 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o /tmp/ccZyQXpk.s 2021-07-15T21:58:26,091 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:27,052 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:27,053 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:27,053 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:27,058 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldmmff94.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:27,069 Using built-in specs. 2021-07-15T21:58:27,070 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:27,070 Target: arm-linux-gnueabihf 2021-07-15T21:58:27,070 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:27,070 Thread model: posix 2021-07-15T21:58:27,071 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:27,071 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:27,071 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:27,071 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldmmff94.cpp -quiet -dumpbase forcefieldmmff94.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdQD04J.s 2021-07-15T21:58:27,084 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:27,085 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:27,085 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:27,085 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:27,086 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:27,086 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:27,086 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:27,086 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:27,086 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:27,087 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:27,087 #include "..." search starts here: 2021-07-15T21:58:27,087 #include <...> search starts here: 2021-07-15T21:58:27,087 /usr/include/eigen3 2021-07-15T21:58:27,087 include 2021-07-15T21:58:27,087 /usr/include/python3.9 2021-07-15T21:58:27,088 /usr/include/c++/10 2021-07-15T21:58:27,088 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:27,088 /usr/include/c++/10/backward 2021-07-15T21:58:27,088 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:27,088 /usr/local/include 2021-07-15T21:58:27,088 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:27,089 /usr/include 2021-07-15T21:58:27,089 End of search list. 2021-07-15T21:58:27,089 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:27,089 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:27,089 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:27,108 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:29,323 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:29,323 from include/openbabel/mol.h:43, 2021-07-15T21:58:29,324 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T21:58:29,324 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:29,324 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:29,324 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:29,324 | ^ 2021-07-15T21:58:29,325 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:29,325 37 | # define UNUSED(x) x 2021-07-15T21:58:29,325 | ^ 2021-07-15T21:58:30,194 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:30,194 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T21:58:30,194 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:30,194 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:30,194 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:30,195 | ^ 2021-07-15T21:58:30,195 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:30,195 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:30,196 | ^~~~~~~~ 2021-07-15T21:58:30,199 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:30,199 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:30,200 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:30,200 | ^ 2021-07-15T21:58:30,200 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:30,200 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:30,201 | ^~~~~~~~ 2021-07-15T21:58:30,225 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:30,225 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:30,225 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:30,225 | ^ 2021-07-15T21:58:30,225 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:30,226 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:30,226 | ^~~~~~~~ 2021-07-15T21:58:30,231 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:30,232 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T21:58:30,232 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:30,232 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:30,232 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:30,232 | ^ 2021-07-15T21:58:30,233 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:30,233 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:30,233 | ^~~~~~~~ 2021-07-15T21:58:30,790 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:30,790 from include/openbabel/mol.h:43, 2021-07-15T21:58:30,790 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T21:58:30,790 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:58:30,790 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,791 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,791 | ^ 2021-07-15T21:58:30,791 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,791 37 | # define UNUSED(x) x 2021-07-15T21:58:30,791 | ^ 2021-07-15T21:58:30,792 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:58:30,792 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,792 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,792 | ^ 2021-07-15T21:58:30,793 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,793 37 | # define UNUSED(x) x 2021-07-15T21:58:30,793 | ^ 2021-07-15T21:58:30,793 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:58:30,793 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,794 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,794 | ^ 2021-07-15T21:58:30,794 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,794 37 | # define UNUSED(x) x 2021-07-15T21:58:30,794 | ^ 2021-07-15T21:58:30,795 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:58:30,795 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,795 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,795 | ^ 2021-07-15T21:58:30,795 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,796 37 | # define UNUSED(x) x 2021-07-15T21:58:30,796 | ^ 2021-07-15T21:58:30,796 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:58:30,796 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,797 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,797 | ^ 2021-07-15T21:58:30,797 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,797 37 | # define UNUSED(x) x 2021-07-15T21:58:30,797 | ^ 2021-07-15T21:58:30,798 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:58:30,798 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,798 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,798 | ^ 2021-07-15T21:58:30,798 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,799 37 | # define UNUSED(x) x 2021-07-15T21:58:30,799 | ^ 2021-07-15T21:58:30,799 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:58:30,799 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,799 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,800 | ^ 2021-07-15T21:58:30,800 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,800 37 | # define UNUSED(x) x 2021-07-15T21:58:30,800 | ^ 2021-07-15T21:58:30,800 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:58:30,801 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:58:30,801 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:58:30,801 | ^ 2021-07-15T21:58:30,801 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:30,801 37 | # define UNUSED(x) x 2021-07-15T21:58:30,801 | ^ 2021-07-15T21:58:31,186 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: 2021-07-15T21:58:31,186 ./src/forcefields/forcefieldmmff94.cpp:2790:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:58:31,187 2790 | int angletype, strbndtype, bondtype1, bondtype2; 2021-07-15T21:58:31,187 | ^~~~~~~~~ 2021-07-15T21:58:31,187 ./src/forcefields/forcefieldmmff94.cpp:2790:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:58:31,187 2790 | int angletype, strbndtype, bondtype1, bondtype2; 2021-07-15T21:58:31,187 | ^~~~~~~~~ 2021-07-15T21:58:31,776 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: 2021-07-15T21:58:31,776 include/forcefields/forcefieldmmff94.h:288:41: required from here 2021-07-15T21:58:31,777 ./src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,777 140 | for (int i = 0; i < _bondcalculations.size(); ++i) { 2021-07-15T21:58:31,777 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,779 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: 2021-07-15T21:58:31,780 include/forcefields/forcefieldmmff94.h:288:59: required from here 2021-07-15T21:58:31,780 ./src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,782 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: 2021-07-15T21:58:31,783 include/forcefields/forcefieldmmff94.h:294:42: required from here 2021-07-15T21:58:31,783 ./src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,783 255 | for (int i = 0; i < _anglecalculations.size(); ++i) { 2021-07-15T21:58:31,783 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,786 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: 2021-07-15T21:58:31,786 include/forcefields/forcefieldmmff94.h:294:61: required from here 2021-07-15T21:58:31,786 ./src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,789 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: 2021-07-15T21:58:31,790 include/forcefields/forcefieldmmff94.h:300:43: required from here 2021-07-15T21:58:31,790 ./src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,790 368 | for (int i = 0; i < _strbndcalculations.size(); ++i) { 2021-07-15T21:58:31,790 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,793 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: 2021-07-15T21:58:31,793 include/forcefields/forcefieldmmff94.h:300:63: required from here 2021-07-15T21:58:31,793 ./src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,796 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: 2021-07-15T21:58:31,796 include/forcefields/forcefieldmmff94.h:306:44: required from here 2021-07-15T21:58:31,797 ./src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,797 504 | for (int i = 0; i < _torsioncalculations.size(); ++i) { 2021-07-15T21:58:31,797 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,800 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: 2021-07-15T21:58:31,800 include/forcefields/forcefieldmmff94.h:306:65: required from here 2021-07-15T21:58:31,801 ./src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,804 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: 2021-07-15T21:58:31,804 include/forcefields/forcefieldmmff94.h:312:40: required from here 2021-07-15T21:58:31,804 ./src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,805 602 | for (int i = 0; i < _oopcalculations.size(); ++i) { 2021-07-15T21:58:31,805 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,808 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: 2021-07-15T21:58:31,808 include/forcefields/forcefieldmmff94.h:312:57: required from here 2021-07-15T21:58:31,808 ./src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,811 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: 2021-07-15T21:58:31,811 include/forcefields/forcefieldmmff94.h:318:40: required from here 2021-07-15T21:58:31,812 ./src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,812 699 | for (int i = 0; i < _vdwcalculations.size(); ++i) { 2021-07-15T21:58:31,812 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,814 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: 2021-07-15T21:58:31,815 include/forcefields/forcefieldmmff94.h:318:57: required from here 2021-07-15T21:58:31,815 ./src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,817 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: 2021-07-15T21:58:31,818 include/forcefields/forcefieldmmff94.h:324:50: required from here 2021-07-15T21:58:31,818 ./src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:31,818 785 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { 2021-07-15T21:58:31,818 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:31,821 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: 2021-07-15T21:58:31,821 include/forcefields/forcefieldmmff94.h:324:77: required from here 2021-07-15T21:58:31,821 ./src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:33,817 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘int OpenBabel::OBForceFieldMMFF94::GetStrBndType(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T21:58:33,817 ./src/forcefields/forcefieldmmff94.cpp:4540:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:58:33,817 4540 | if (btbc) { 2021-07-15T21:58:33,818 | ^~ 2021-07-15T21:58:33,818 ./src/forcefields/forcefieldmmff94.cpp:4548:5: note: here 2021-07-15T21:58:33,818 4548 | case 2: 2021-07-15T21:58:33,818 | ^~~~ 2021-07-15T21:58:33,818 ./src/forcefields/forcefieldmmff94.cpp:4565:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:58:33,819 4565 | if (btbc) { 2021-07-15T21:58:33,819 | ^~ 2021-07-15T21:58:33,819 ./src/forcefields/forcefieldmmff94.cpp:4573:5: note: here 2021-07-15T21:58:33,819 4573 | case 6: 2021-07-15T21:58:33,819 | ^~~~ 2021-07-15T21:58:33,819 ./src/forcefields/forcefieldmmff94.cpp:4584:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T21:58:33,820 4584 | if (btbc) { 2021-07-15T21:58:33,820 | ^~ 2021-07-15T21:58:33,820 ./src/forcefields/forcefieldmmff94.cpp:4592:5: note: here 2021-07-15T21:58:33,820 4592 | case 8: 2021-07-15T21:58:33,820 | ^~~~ 2021-07-15T21:58:38,975 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘bool OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: 2021-07-15T21:58:38,976 ./src/forcefields/forcefieldmmff94.cpp:1443:30: warning: ‘first_rj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:58:38,976 1443 | ringbond = _mol.GetBond(first_rj, index); 2021-07-15T21:58:38,976 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:58:38,976 ./src/forcefields/forcefieldmmff94.cpp:1443:30: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:58:42,479 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:42,480 from include/openbabel/obconversion.h:30, 2021-07-15T21:58:42,480 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T21:58:42,480 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationMMFF94&}; _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:42,480 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:42,481 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:42,481 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:42,661 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationMMFF94&}; _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:42,661 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:42,908 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFStrBndCalculationMMFF94&}; _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:42,908 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:43,739 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationMMFF94&}; _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:43,739 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:44,027 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationMMFF94&}; _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:44,028 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:44,239 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:58:44,239 from include/openbabel/obconversion.h:30, 2021-07-15T21:58:44,239 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T21:58:44,240 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:44,240 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:44,240 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:44,240 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:44,360 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:44,361 from include/openbabel/obconversion.h:30, 2021-07-15T21:58:44,361 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T21:58:44,361 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationMMFF94&}; _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:44,361 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:44,361 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:44,362 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:44,578 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationMMFF94&}; _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T21:58:44,578 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:45,627 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:58:45,627 from include/openbabel/obconversion.h:30, 2021-07-15T21:58:45,627 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T21:58:45,628 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: 2021-07-15T21:58:45,628 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,628 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,628 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,628 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,629 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,629 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,635 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,636 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,636 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,638 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,638 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,639 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,646 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,646 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,647 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,650 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,651 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,651 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,651 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,651 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,652 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,652 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,652 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,653 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,659 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,659 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,659 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:45,663 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:45,663 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:58:45,663 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:58:49,294 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:49,294 from include/openbabel/obconversion.h:30, 2021-07-15T21:58:49,294 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T21:58:49,295 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:58:49,295 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:49,295 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:49,296 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:49,335 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:58:49,336 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:49,336 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:49,336 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:50,656 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’: 2021-07-15T21:58:50,657 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:50,657 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:50,657 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:50,658 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:50,658 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:50,658 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:51,031 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::string&)’: 2021-07-15T21:58:51,031 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:51,032 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:51,032 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:51,415 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’: 2021-07-15T21:58:51,415 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:51,416 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:51,416 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:51,416 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:51,417 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:51,417 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:51,803 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::string&)’: 2021-07-15T21:58:51,803 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:51,803 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:51,804 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:52,174 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’: 2021-07-15T21:58:52,175 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:52,175 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:52,175 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:52,176 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:52,176 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:52,176 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:52,557 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’: 2021-07-15T21:58:52,557 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:52,558 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:52,558 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:52,558 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:52,559 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:52,559 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:53,358 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’: 2021-07-15T21:58:53,358 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:53,358 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:53,359 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:53,359 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:53,359 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:53,360 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:53,755 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’: 2021-07-15T21:58:53,756 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:53,756 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:53,756 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:53,757 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:53,757 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:53,757 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,167 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’: 2021-07-15T21:58:54,168 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,168 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,168 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,168 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,169 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,169 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,169 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,170 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,170 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,170 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,171 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,603 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’: 2021-07-15T21:58:54,603 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,604 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,604 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,604 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,605 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:54,605 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:54,605 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:54,606 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:00,884 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’: 2021-07-15T21:59:00,884 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:00,885 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:00,885 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:03,768 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:03,769 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o /tmp/ccdQD04J.s 2021-07-15T21:59:03,776 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:06,632 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:06,632 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:06,632 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:06,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefielduff.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:06,651 Using built-in specs. 2021-07-15T21:59:06,652 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:06,652 Target: arm-linux-gnueabihf 2021-07-15T21:59:06,653 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:06,653 Thread model: posix 2021-07-15T21:59:06,653 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:06,653 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:06,653 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:06,654 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefielduff.cpp -quiet -dumpbase forcefielduff.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccSDmAB8.s 2021-07-15T21:59:06,667 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:06,668 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:06,668 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:06,669 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:06,670 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:06,670 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:06,670 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:06,670 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:06,670 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:06,670 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:06,671 #include "..." search starts here: 2021-07-15T21:59:06,671 #include <...> search starts here: 2021-07-15T21:59:06,671 /usr/include/eigen3 2021-07-15T21:59:06,671 include 2021-07-15T21:59:06,671 /usr/include/python3.9 2021-07-15T21:59:06,672 /usr/include/c++/10 2021-07-15T21:59:06,672 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:06,672 /usr/include/c++/10/backward 2021-07-15T21:59:06,672 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:06,672 /usr/local/include 2021-07-15T21:59:06,672 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:06,672 /usr/include 2021-07-15T21:59:06,673 End of search list. 2021-07-15T21:59:06,673 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:06,673 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:06,673 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:06,690 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:08,639 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:08,640 from include/openbabel/mol.h:43, 2021-07-15T21:59:08,640 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:08,640 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:08,640 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:08,641 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:08,641 | ^ 2021-07-15T21:59:08,641 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:08,641 37 | # define UNUSED(x) x 2021-07-15T21:59:08,641 | ^ 2021-07-15T21:59:09,625 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:09,625 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:09,626 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:09,626 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:09,626 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:09,626 | ^ 2021-07-15T21:59:09,626 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:09,627 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:09,627 | ^~~~~~~~ 2021-07-15T21:59:09,631 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:09,631 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:09,631 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:09,631 | ^ 2021-07-15T21:59:09,632 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:09,632 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:09,632 | ^~~~~~~~ 2021-07-15T21:59:09,654 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:09,654 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:09,655 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:09,655 | ^ 2021-07-15T21:59:09,655 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:09,655 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:09,656 | ^~~~~~~~ 2021-07-15T21:59:09,661 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:09,661 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:09,662 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:09,662 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:09,662 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:09,662 | ^ 2021-07-15T21:59:09,662 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:09,663 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:09,663 | ^~~~~~~~ 2021-07-15T21:59:10,233 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:10,233 from include/openbabel/mol.h:43, 2021-07-15T21:59:10,234 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:10,234 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T21:59:10,234 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,234 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,234 | ^ 2021-07-15T21:59:10,235 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,235 37 | # define UNUSED(x) x 2021-07-15T21:59:10,235 | ^ 2021-07-15T21:59:10,235 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T21:59:10,236 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,236 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,236 | ^ 2021-07-15T21:59:10,236 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,237 37 | # define UNUSED(x) x 2021-07-15T21:59:10,237 | ^ 2021-07-15T21:59:10,237 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T21:59:10,237 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,237 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,238 | ^ 2021-07-15T21:59:10,238 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,238 37 | # define UNUSED(x) x 2021-07-15T21:59:10,238 | ^ 2021-07-15T21:59:10,238 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T21:59:10,239 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,239 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,239 | ^ 2021-07-15T21:59:10,239 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,239 37 | # define UNUSED(x) x 2021-07-15T21:59:10,240 | ^ 2021-07-15T21:59:10,240 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T21:59:10,240 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,240 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,240 | ^ 2021-07-15T21:59:10,241 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,241 37 | # define UNUSED(x) x 2021-07-15T21:59:10,241 | ^ 2021-07-15T21:59:10,241 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T21:59:10,241 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,242 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,242 | ^ 2021-07-15T21:59:10,242 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,242 37 | # define UNUSED(x) x 2021-07-15T21:59:10,242 | ^ 2021-07-15T21:59:10,243 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T21:59:10,243 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,243 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,243 | ^ 2021-07-15T21:59:10,243 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,244 37 | # define UNUSED(x) x 2021-07-15T21:59:10,244 | ^ 2021-07-15T21:59:10,244 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T21:59:10,244 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T21:59:10,244 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T21:59:10,244 | ^ 2021-07-15T21:59:10,245 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:10,245 37 | # define UNUSED(x) x 2021-07-15T21:59:10,245 | ^ 2021-07-15T21:59:11,438 ./src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: 2021-07-15T21:59:11,439 ./src/forcefields/forcefielduff.cpp:470:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 2021-07-15T21:59:11,439 include/forcefields/forcefielduff.h:192:38: required from here 2021-07-15T21:59:11,439 ./src/forcefields/forcefielduff.cpp:423:14: warning: unused variable ‘ab’ [-Wunused-variable] 2021-07-15T21:59:11,439 423 | double ab[3]; 2021-07-15T21:59:11,439 | ^~ 2021-07-15T21:59:11,441 ./src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: 2021-07-15T21:59:11,441 ./src/forcefields/forcefielduff.cpp:470:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 2021-07-15T21:59:11,441 include/forcefields/forcefielduff.h:192:55: required from here 2021-07-15T21:59:11,441 ./src/forcefields/forcefielduff.cpp:423:14: warning: unused variable ‘ab’ [-Wunused-variable] 2021-07-15T21:59:19,924 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:19,925 from include/openbabel/mol.h:35, 2021-07-15T21:59:19,925 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:19,925 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationUFF&}; _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:19,925 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:19,926 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:19,926 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:20,105 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationUFF&}; _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:20,105 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:20,326 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationUFF&}; _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:20,327 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:20,630 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationUFF&}; _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:20,630 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:20,917 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationUFF&}; _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:20,917 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:22,359 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:59:22,359 from include/openbabel/mol.h:35, 2021-07-15T21:59:22,359 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:22,359 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’: 2021-07-15T21:59:22,360 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,360 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,360 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,368 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,368 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,368 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,372 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,373 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,373 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,382 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,382 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,383 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,388 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,389 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,389 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,391 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,391 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,391 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,393 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,393 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,393 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:22,397 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:22,397 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:22,398 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:25,628 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:25,629 from include/openbabel/mol.h:35, 2021-07-15T21:59:25,629 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:25,629 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationUFF&}; _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T21:59:25,629 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:25,629 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:25,629 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:25,799 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:59:25,799 from include/openbabel/mol.h:35, 2021-07-15T21:59:25,799 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:25,800 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: 2021-07-15T21:59:25,800 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:25,800 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:25,800 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:26,085 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:26,085 from include/openbabel/mol.h:35, 2021-07-15T21:59:26,085 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T21:59:26,086 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:59:26,086 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:26,086 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:26,086 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,572 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’: 2021-07-15T21:59:29,572 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,572 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,573 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,573 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,573 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,574 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,574 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,575 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,575 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,576 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,576 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,576 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,577 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,577 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,577 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,578 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,578 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,579 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,580 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,580 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,580 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,581 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,581 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,581 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,582 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,582 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,583 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,583 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,584 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,584 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:29,585 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:29,585 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:29,585 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:32,687 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:32,687 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o /tmp/ccSDmAB8.s 2021-07-15T21:59:32,692 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:34,222 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:34,222 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:34,223 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:34,231 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/format.cpp -o build/temp.linux-armv7l-3.9/./src/format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:34,241 Using built-in specs. 2021-07-15T21:59:34,242 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:34,243 Target: arm-linux-gnueabihf 2021-07-15T21:59:34,243 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:34,244 Thread model: posix 2021-07-15T21:59:34,244 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:34,245 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:34,246 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:34,247 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/format.cpp -quiet -dumpbase format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRlxBlo.s 2021-07-15T21:59:34,256 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:34,258 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:34,258 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:34,259 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:34,260 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:34,260 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:34,260 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:34,261 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:34,261 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:34,261 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:34,262 #include "..." search starts here: 2021-07-15T21:59:34,262 #include <...> search starts here: 2021-07-15T21:59:34,262 /usr/include/eigen3 2021-07-15T21:59:34,263 include 2021-07-15T21:59:34,263 /usr/include/python3.9 2021-07-15T21:59:34,263 /usr/include/c++/10 2021-07-15T21:59:34,264 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:34,264 /usr/include/c++/10/backward 2021-07-15T21:59:34,264 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:34,265 /usr/local/include 2021-07-15T21:59:34,265 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:34,265 /usr/include 2021-07-15T21:59:34,266 End of search list. 2021-07-15T21:59:34,266 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:34,266 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:34,267 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:34,276 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:36,923 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:36,924 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/format.o /tmp/ccRlxBlo.s 2021-07-15T21:59:36,929 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:37,072 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:37,072 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:37,073 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:37,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/APIInterface.cpp -o build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:37,082 Using built-in specs. 2021-07-15T21:59:37,083 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:37,084 Target: arm-linux-gnueabihf 2021-07-15T21:59:37,084 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:37,084 Thread model: posix 2021-07-15T21:59:37,085 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:37,085 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:37,085 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:37,086 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/APIInterface.cpp -quiet -dumpbase APIInterface.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZHbVuN.s 2021-07-15T21:59:37,099 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:37,099 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:37,100 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:37,100 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:37,100 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:37,101 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:37,101 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:37,101 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:37,102 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:37,102 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:37,102 #include "..." search starts here: 2021-07-15T21:59:37,103 #include <...> search starts here: 2021-07-15T21:59:37,103 /usr/include/eigen3 2021-07-15T21:59:37,103 include 2021-07-15T21:59:37,103 /usr/include/python3.9 2021-07-15T21:59:37,103 /usr/include/c++/10 2021-07-15T21:59:37,104 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:37,104 /usr/include/c++/10/backward 2021-07-15T21:59:37,104 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:37,104 /usr/local/include 2021-07-15T21:59:37,105 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:37,105 /usr/include 2021-07-15T21:59:37,105 End of search list. 2021-07-15T21:59:37,105 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:37,106 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:37,106 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:37,120 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:40,196 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,197 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o /tmp/ccZHbVuN.s 2021-07-15T21:59:40,207 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:40,326 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:40,327 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:40,327 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/ArrayList.c -o build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:40,337 Using built-in specs. 2021-07-15T21:59:40,339 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:40,339 Target: arm-linux-gnueabihf 2021-07-15T21:59:40,339 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:40,339 Thread model: posix 2021-07-15T21:59:40,339 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:40,340 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:40,340 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,340 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1 -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/ArrayList.c -quiet -dumpbase ArrayList.c -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccg9oGj4.s 2021-07-15T21:59:40,351 cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C 2021-07-15T21:59:40,352 GNU C17 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:40,352 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:40,352 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:40,353 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:40,353 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:40,353 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:40,353 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:40,353 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:40,354 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:40,354 #include "..." search starts here: 2021-07-15T21:59:40,354 #include <...> search starts here: 2021-07-15T21:59:40,354 /usr/include/eigen3 2021-07-15T21:59:40,354 include 2021-07-15T21:59:40,354 /usr/include/python3.9 2021-07-15T21:59:40,354 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:40,355 /usr/local/include 2021-07-15T21:59:40,355 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:40,355 /usr/include 2021-07-15T21:59:40,355 End of search list. 2021-07-15T21:59:40,355 GNU C17 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:40,356 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:40,356 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:40,366 Compiler executable checksum: b0c2f0ffcfbe7fc710aaf45c31c63944 2021-07-15T21:59:40,587 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,588 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o /tmp/ccg9oGj4.s 2021-07-15T21:59:40,592 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:40,616 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:40,616 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:40,617 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,617 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/CSRformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:40,627 Using built-in specs. 2021-07-15T21:59:40,628 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:40,628 Target: arm-linux-gnueabihf 2021-07-15T21:59:40,628 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:40,628 Thread model: posix 2021-07-15T21:59:40,628 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:40,629 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:40,629 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:40,629 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/CSRformat.cpp -quiet -dumpbase CSRformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc51c7Bh.s 2021-07-15T21:59:40,641 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:40,641 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:40,642 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:40,642 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:40,642 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:40,643 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:40,643 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:40,643 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:40,643 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:40,644 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:40,644 #include "..." search starts here: 2021-07-15T21:59:40,644 #include <...> search starts here: 2021-07-15T21:59:40,644 /usr/include/eigen3 2021-07-15T21:59:40,644 include 2021-07-15T21:59:40,645 /usr/include/python3.9 2021-07-15T21:59:40,645 /usr/include/c++/10 2021-07-15T21:59:40,645 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:40,646 /usr/include/c++/10/backward 2021-07-15T21:59:40,646 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:40,646 /usr/local/include 2021-07-15T21:59:40,646 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:40,646 /usr/include 2021-07-15T21:59:40,647 End of search list. 2021-07-15T21:59:40,647 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:40,647 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:40,648 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:40,659 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:42,229 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:42,229 from include/openbabel/mol.h:43, 2021-07-15T21:59:42,230 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:42,230 from ./src/formats/CSRformat.cpp:17: 2021-07-15T21:59:42,230 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:42,231 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:42,231 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:42,231 | ^ 2021-07-15T21:59:42,231 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:42,232 37 | # define UNUSED(x) x 2021-07-15T21:59:42,232 | ^ 2021-07-15T21:59:43,021 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:43,022 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:43,022 from ./src/formats/CSRformat.cpp:17: 2021-07-15T21:59:43,022 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:43,023 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:43,023 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:43,023 | ^ 2021-07-15T21:59:43,024 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:43,024 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:43,024 | ^~~~~~~~ 2021-07-15T21:59:43,026 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:43,026 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:43,027 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:43,027 | ^ 2021-07-15T21:59:43,027 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:43,028 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:43,028 | ^~~~~~~~ 2021-07-15T21:59:43,045 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:43,045 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:43,046 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:43,046 | ^ 2021-07-15T21:59:43,046 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:43,047 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:43,047 | ^~~~~~~~ 2021-07-15T21:59:43,051 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:43,051 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:43,051 from ./src/formats/CSRformat.cpp:17: 2021-07-15T21:59:43,052 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:43,052 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:43,052 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:43,053 | ^ 2021-07-15T21:59:43,053 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:43,053 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:43,054 | ^~~~~~~~ 2021-07-15T21:59:45,483 In file included from /usr/include/string.h:495, 2021-07-15T21:59:45,484 from /usr/include/c++/10/cstring:42, 2021-07-15T21:59:45,484 from include/openbabel/data.h:26, 2021-07-15T21:59:45,484 from include/openbabel/mol.h:46, 2021-07-15T21:59:45,485 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:45,485 from ./src/formats/CSRformat.cpp:17: 2021-07-15T21:59:45,485 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T21:59:45,485 inlined from ‘char* OpenBabel::CSRFormat::PadString(char*, int)’ at ./src/formats/CSRformat.cpp:188:12: 2021-07-15T21:59:45,486 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2021-07-15T21:59:45,486 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T21:59:45,486 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:45,487 ./src/formats/CSRformat.cpp: In member function ‘char* OpenBabel::CSRFormat::PadString(char*, int)’: 2021-07-15T21:59:45,487 ./src/formats/CSRformat.cpp:188:12: note: length computed here 2021-07-15T21:59:45,487 188 | strncpy(output, input, strlen(input)); 2021-07-15T21:59:45,487 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:45,726 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:45,726 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o /tmp/cc51c7Bh.s 2021-07-15T21:59:45,732 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:45,919 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:45,920 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:45,920 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:45,922 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/MCDLformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:45,930 Using built-in specs. 2021-07-15T21:59:45,932 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:45,932 Target: arm-linux-gnueabihf 2021-07-15T21:59:45,932 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:45,932 Thread model: posix 2021-07-15T21:59:45,932 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:45,933 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:45,933 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:45,933 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/MCDLformat.cpp -quiet -dumpbase MCDLformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdki62y.s 2021-07-15T21:59:45,946 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:45,946 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:45,946 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:45,947 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:45,947 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:45,947 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:45,947 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:45,948 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:45,948 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:45,948 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:45,948 #include "..." search starts here: 2021-07-15T21:59:45,948 #include <...> search starts here: 2021-07-15T21:59:45,948 /usr/include/eigen3 2021-07-15T21:59:45,949 include 2021-07-15T21:59:45,949 /usr/include/python3.9 2021-07-15T21:59:45,949 /usr/include/c++/10 2021-07-15T21:59:45,949 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:45,949 /usr/include/c++/10/backward 2021-07-15T21:59:45,949 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:45,949 /usr/local/include 2021-07-15T21:59:45,950 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:45,950 /usr/include 2021-07-15T21:59:45,950 End of search list. 2021-07-15T21:59:45,950 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:45,950 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:45,951 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:45,964 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:47,533 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:47,533 from include/openbabel/mol.h:43, 2021-07-15T21:59:47,534 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:47,534 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T21:59:47,534 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:47,534 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:47,534 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:47,534 | ^ 2021-07-15T21:59:47,535 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:47,535 37 | # define UNUSED(x) x 2021-07-15T21:59:47,535 | ^ 2021-07-15T21:59:48,321 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:48,322 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:48,322 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T21:59:48,322 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:48,322 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:48,322 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:48,322 | ^ 2021-07-15T21:59:48,323 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:48,323 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:48,323 | ^~~~~~~~ 2021-07-15T21:59:48,325 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:48,326 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:48,326 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:48,326 | ^ 2021-07-15T21:59:48,326 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:48,326 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:48,327 | ^~~~~~~~ 2021-07-15T21:59:48,344 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:48,344 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:48,344 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:48,345 | ^ 2021-07-15T21:59:48,345 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:48,345 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:48,345 | ^~~~~~~~ 2021-07-15T21:59:48,349 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:48,350 from include/openbabel/obmolecformat.h:26, 2021-07-15T21:59:48,350 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T21:59:48,350 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:48,350 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:48,350 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:48,350 | ^ 2021-07-15T21:59:48,351 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:48,351 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:48,351 | ^~~~~~~~ 2021-07-15T21:59:48,684 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,684 ./src/formats/MCDLformat.cpp:152:5: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,684 152 | }; 2021-07-15T21:59:48,685 | ^ 2021-07-15T21:59:48,685 ./src/formats/MCDLformat.cpp:169:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,685 169 | }; 2021-07-15T21:59:48,685 | ^ 2021-07-15T21:59:48,689 ./src/formats/MCDLformat.cpp: In member function ‘std::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)’: 2021-07-15T21:59:48,689 ./src/formats/MCDLformat.cpp:174:66: warning: unused parameter ‘tstr’ [-Wunused-parameter] 2021-07-15T21:59:48,689 174 | string MCDLFormat::constring(int conntab [MAXBONDS][4], char * tstr) 2021-07-15T21:59:48,689 | ~~~~~~~^~~~ 2021-07-15T21:59:48,691 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: 2021-07-15T21:59:48,692 ./src/formats/MCDLformat.cpp:278:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T21:59:48,692 278 | if (jflag) 2021-07-15T21:59:48,692 | ^~ 2021-07-15T21:59:48,692 ./src/formats/MCDLformat.cpp:282:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T21:59:48,692 282 | nt = 1; 2021-07-15T21:59:48,692 | ^~ 2021-07-15T21:59:48,700 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,701 ./src/formats/MCDLformat.cpp:475:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,701 475 | }; 2021-07-15T21:59:48,701 | ^ 2021-07-15T21:59:48,740 ./src/formats/MCDLformat.cpp: In member function ‘std::string OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*, bool)’: 2021-07-15T21:59:48,740 ./src/formats/MCDLformat.cpp:529:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable] 2021-07-15T21:59:48,741 529 | bool test;//, testParity; 2021-07-15T21:59:48,741 | ^~~~ 2021-07-15T21:59:48,744 ./src/formats/MCDLformat.cpp:479:48: warning: unused parameter ‘includeCoordinates’ [-Wunused-parameter] 2021-07-15T21:59:48,744 479 | string MCDLFormat::getMCDL(OBMol* pmol, bool includeCoordinates) { 2021-07-15T21:59:48,744 | ~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:48,746 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,746 ./src/formats/MCDLformat.cpp:946:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,746 946 | }; 2021-07-15T21:59:48,746 | ^ 2021-07-15T21:59:48,747 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::restoreFullMCDL(std::string, OpenBabel::OBMol*)’: 2021-07-15T21:59:48,747 ./src/formats/MCDLformat.cpp:948:43: warning: unused parameter ‘value’ [-Wunused-parameter] 2021-07-15T21:59:48,747 948 | void MCDLFormat::restoreFullMCDL(string value, OBMol* pmol) { 2021-07-15T21:59:48,747 | ~~~~~~~^~~~~ 2021-07-15T21:59:48,747 ./src/formats/MCDLformat.cpp:948:57: warning: unused parameter ‘pmol’ [-Wunused-parameter] 2021-07-15T21:59:48,747 948 | void MCDLFormat::restoreFullMCDL(string value, OBMol* pmol) { 2021-07-15T21:59:48,747 | ~~~~~~~^~~~ 2021-07-15T21:59:48,748 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,748 ./src/formats/MCDLformat.cpp:950:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,748 950 | }; 2021-07-15T21:59:48,748 | ^ 2021-07-15T21:59:48,757 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)’: 2021-07-15T21:59:48,757 ./src/formats/MCDLformat.cpp:1031:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T21:59:48,757 1031 | if (n1 < 0) n1=indexOf(s,"-"); 2021-07-15T21:59:48,758 | ~~~^~~ 2021-07-15T21:59:48,758 ./src/formats/MCDLformat.cpp:1032:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T21:59:48,758 1032 | if (n1 < 0) n1=indexOf(s,"*"); 2021-07-15T21:59:48,758 | ~~~^~~ 2021-07-15T21:59:48,758 ./src/formats/MCDLformat.cpp:1033:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T21:59:48,758 1033 | if (n1 < 0) { 2021-07-15T21:59:48,758 | ~~~^~~ 2021-07-15T21:59:48,760 ./src/formats/MCDLformat.cpp:1062:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,760 1062 | if (n1>=0) { 2021-07-15T21:59:48,760 | ~~^~~ 2021-07-15T21:59:48,762 ./src/formats/MCDLformat.cpp:1070:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,762 1070 | if (n1>=0) { 2021-07-15T21:59:48,762 | ~~^~~ 2021-07-15T21:59:48,763 ./src/formats/MCDLformat.cpp:1079:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,764 1079 | if (n1>=0) { 2021-07-15T21:59:48,764 | ~~^~~ 2021-07-15T21:59:48,767 ./src/formats/MCDLformat.cpp:1092:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,767 1092 | if (n1>=0) { 2021-07-15T21:59:48,767 | ~~^~~ 2021-07-15T21:59:48,770 ./src/formats/MCDLformat.cpp:1118:11: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T21:59:48,771 1118 | if (n1<0) { 2021-07-15T21:59:48,771 | ~~^~ 2021-07-15T21:59:48,771 ./src/formats/MCDLformat.cpp:1121:25: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,771 1121 | if ((n2=0)) n1=n2; 2021-07-15T21:59:48,771 | ~~^~~ 2021-07-15T21:59:48,783 ./src/formats/MCDLformat.cpp:1266:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:59:48,783 1266 | if (nPrev == acount) { 2021-07-15T21:59:48,783 | ~~~~~~^~~~~~~~~ 2021-07-15T21:59:48,786 ./src/formats/MCDLformat.cpp:1298:11: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T21:59:48,786 1298 | if (n1<0) n1=n2; else if ((n2=0)) n1=n2; 2021-07-15T21:59:48,786 | ~~^~ 2021-07-15T21:59:48,786 ./src/formats/MCDLformat.cpp:1298:45: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,786 1298 | if (n1<0) n1=n2; else if ((n2=0)) n1=n2; 2021-07-15T21:59:48,787 | ~~^~~ 2021-07-15T21:59:48,787 ./src/formats/MCDLformat.cpp:1300:12: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,787 1300 | if ((n1>=0) && (value.length() > n1)) { 2021-07-15T21:59:48,787 | ~~^~~ 2021-07-15T21:59:48,787 ./src/formats/MCDLformat.cpp:1312:13: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,787 1312 | if (n1>=0) { 2021-07-15T21:59:48,787 | ~~^~~ 2021-07-15T21:59:48,796 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,796 ./src/formats/MCDLformat.cpp:1353:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,797 1353 | }; 2021-07-15T21:59:48,797 | ^ 2021-07-15T21:59:48,798 ./src/formats/MCDLformat.cpp:1379:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,798 1379 | }; 2021-07-15T21:59:48,799 | ^ 2021-07-15T21:59:48,799 ./src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)’: 2021-07-15T21:59:48,799 ./src/formats/MCDLformat.cpp:1384:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-15T21:59:48,799 1384 | if (result == string::npos) result=-1; 2021-07-15T21:59:48,799 | ~~~~~~~^~~~~~~~~~~~~~~ 2021-07-15T21:59:48,799 ./src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:59:48,800 1385 | if (result >= instring.length()) result=-1; 2021-07-15T21:59:48,800 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:48,800 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,800 ./src/formats/MCDLformat.cpp:1387:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,800 1387 | }; 2021-07-15T21:59:48,800 | ^ 2021-07-15T21:59:48,800 ./src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)’: 2021-07-15T21:59:48,801 ./src/formats/MCDLformat.cpp:1398:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-15T21:59:48,801 1398 | if (n == string::npos) 2021-07-15T21:59:48,801 | ~~^~~~~~~~~~~~~~~ 2021-07-15T21:59:48,801 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,801 ./src/formats/MCDLformat.cpp:1408:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,801 1408 | }; 2021-07-15T21:59:48,801 | ^ 2021-07-15T21:59:48,802 ./src/formats/MCDLformat.cpp: In member function ‘bool OpenBabel::MCDLFormat::parseFormula(std::string, std::vector&)’: 2021-07-15T21:59:48,802 ./src/formats/MCDLformat.cpp:1426:14: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,802 1426 | if (n>=0) { 2021-07-15T21:59:48,803 | ~^~~ 2021-07-15T21:59:48,805 ./src/formats/MCDLformat.cpp:1449:14: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T21:59:48,805 1449 | if (n>=0) { 2021-07-15T21:59:48,805 | ~^~~ 2021-07-15T21:59:48,808 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T21:59:48,808 ./src/formats/MCDLformat.cpp:1467:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:48,809 1467 | }; 2021-07-15T21:59:48,809 | ^ 2021-07-15T21:59:52,912 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: 2021-07-15T21:59:52,912 ./src/formats/MCDLformat.cpp:395:22: warning: ‘dupfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:52,912 395 | else if (ix[i] == dupfrag && j != dupnum) 2021-07-15T21:59:52,912 | ^~ 2021-07-15T21:59:52,913 ./src/formats/MCDLformat.cpp:237:28: warning: ‘jump’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:52,913 237 | int numdups, dupfrag, jump; 2021-07-15T21:59:52,913 | ^~~~ 2021-07-15T21:59:52,913 ./src/formats/MCDLformat.cpp:385:24: warning: ‘numdups’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:52,913 385 | for (j=0; j search starts here: 2021-07-15T22:00:09,900 /usr/include/eigen3 2021-07-15T22:00:09,900 include 2021-07-15T22:00:09,901 /usr/include/python3.9 2021-07-15T22:00:09,901 /usr/include/c++/10 2021-07-15T22:00:09,901 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:09,901 /usr/include/c++/10/backward 2021-07-15T22:00:09,901 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:09,901 /usr/local/include 2021-07-15T22:00:09,901 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:09,902 /usr/include 2021-07-15T22:00:09,902 End of search list. 2021-07-15T22:00:09,902 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:09,902 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:09,902 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:09,922 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:11,902 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:11,903 from include/openbabel/mol.h:43, 2021-07-15T22:00:11,903 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:11,903 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:00:11,903 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:11,903 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:11,904 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:11,904 | ^ 2021-07-15T22:00:11,904 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:11,904 37 | # define UNUSED(x) x 2021-07-15T22:00:11,904 | ^ 2021-07-15T22:00:12,874 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:12,874 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:12,875 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:00:12,875 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:12,875 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:12,875 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:12,876 | ^ 2021-07-15T22:00:12,876 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:12,876 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:12,876 | ^~~~~~~~ 2021-07-15T22:00:12,880 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:12,880 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:12,880 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:12,880 | ^ 2021-07-15T22:00:12,881 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:12,881 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:12,881 | ^~~~~~~~ 2021-07-15T22:00:12,903 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:12,904 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:12,904 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:12,904 | ^ 2021-07-15T22:00:12,904 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:12,905 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:12,905 | ^~~~~~~~ 2021-07-15T22:00:12,910 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:12,911 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:12,911 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:00:12,911 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:12,911 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:12,911 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:12,911 | ^ 2021-07-15T22:00:12,912 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:12,912 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:12,912 | ^~~~~~~~ 2021-07-15T22:00:18,282 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:18,283 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o /tmp/ccFlaFh1.s 2021-07-15T22:00:18,288 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:18,672 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:18,673 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:18,673 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:18,675 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/PQSformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:18,684 Using built-in specs. 2021-07-15T22:00:18,685 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:18,686 Target: arm-linux-gnueabihf 2021-07-15T22:00:18,686 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:18,686 Thread model: posix 2021-07-15T22:00:18,686 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:18,686 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:18,686 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:18,687 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/PQSformat.cpp -quiet -dumpbase PQSformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTEm9Xi.s 2021-07-15T22:00:18,706 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:18,707 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:18,707 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:18,707 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:18,707 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:18,707 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:18,708 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:18,708 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:18,708 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:18,708 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:18,708 #include "..." search starts here: 2021-07-15T22:00:18,708 #include <...> search starts here: 2021-07-15T22:00:18,709 /usr/include/eigen3 2021-07-15T22:00:18,709 include 2021-07-15T22:00:18,709 /usr/include/python3.9 2021-07-15T22:00:18,709 /usr/include/c++/10 2021-07-15T22:00:18,709 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:18,709 /usr/include/c++/10/backward 2021-07-15T22:00:18,709 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:18,710 /usr/local/include 2021-07-15T22:00:18,710 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:18,710 /usr/include 2021-07-15T22:00:18,710 End of search list. 2021-07-15T22:00:18,710 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:18,710 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:18,711 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:18,729 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:20,666 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:20,666 from include/openbabel/mol.h:43, 2021-07-15T22:00:20,666 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:20,667 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:00:20,667 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:20,667 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:20,667 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:20,668 | ^ 2021-07-15T22:00:20,668 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:20,668 37 | # define UNUSED(x) x 2021-07-15T22:00:20,668 | ^ 2021-07-15T22:00:21,655 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:21,655 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:21,655 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:00:21,655 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:21,656 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:21,656 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:21,656 | ^ 2021-07-15T22:00:21,656 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:21,657 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:21,657 | ^~~~~~~~ 2021-07-15T22:00:21,660 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:21,661 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:21,661 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:21,661 | ^ 2021-07-15T22:00:21,661 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:21,661 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:21,662 | ^~~~~~~~ 2021-07-15T22:00:21,684 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:21,684 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:21,684 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:21,685 | ^ 2021-07-15T22:00:21,685 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:21,685 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:21,685 | ^~~~~~~~ 2021-07-15T22:00:21,691 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:21,691 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:21,691 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:00:21,692 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:21,692 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:21,692 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:21,692 | ^ 2021-07-15T22:00:21,692 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:21,693 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:21,693 | ^~~~~~~~ 2021-07-15T22:00:25,523 ./src/formats/PQSformat.cpp: In member function ‘virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:25,524 ./src/formats/PQSformat.cpp:259:49: warning: ‘pFormat’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:00:25,524 259 | return pFormat->ReadMolecule(&mol,&coordconv); 2021-07-15T22:00:25,524 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:00:26,452 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:26,452 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o /tmp/ccTEm9Xi.s 2021-07-15T22:00:26,457 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:26,758 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:26,758 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:26,758 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:26,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/abinitformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:26,770 Using built-in specs. 2021-07-15T22:00:26,771 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:26,772 Target: arm-linux-gnueabihf 2021-07-15T22:00:26,772 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:26,772 Thread model: posix 2021-07-15T22:00:26,772 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:26,772 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:26,773 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:26,773 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/abinitformat.cpp -quiet -dumpbase abinitformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNIlIHw.s 2021-07-15T22:00:26,787 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:26,787 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:26,788 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:26,788 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:26,788 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:26,788 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:26,789 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:26,789 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:26,789 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:26,789 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:26,789 #include "..." search starts here: 2021-07-15T22:00:26,790 #include <...> search starts here: 2021-07-15T22:00:26,790 /usr/include/eigen3 2021-07-15T22:00:26,790 include 2021-07-15T22:00:26,790 /usr/include/python3.9 2021-07-15T22:00:26,790 /usr/include/c++/10 2021-07-15T22:00:26,790 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:26,791 /usr/include/c++/10/backward 2021-07-15T22:00:26,791 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:26,791 /usr/local/include 2021-07-15T22:00:26,791 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:26,791 /usr/include 2021-07-15T22:00:26,791 End of search list. 2021-07-15T22:00:26,792 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:26,792 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:26,792 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:26,809 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:28,744 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:28,744 from include/openbabel/mol.h:43, 2021-07-15T22:00:28,745 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:28,745 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:00:28,745 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:28,745 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:28,746 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:28,746 | ^ 2021-07-15T22:00:28,746 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:28,746 37 | # define UNUSED(x) x 2021-07-15T22:00:28,746 | ^ 2021-07-15T22:00:29,730 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:29,730 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:29,730 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:00:29,730 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:29,731 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:29,731 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:29,731 | ^ 2021-07-15T22:00:29,731 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:29,732 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:29,732 | ^~~~~~~~ 2021-07-15T22:00:29,735 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:29,736 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:29,736 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:29,736 | ^ 2021-07-15T22:00:29,736 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:29,736 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:29,737 | ^~~~~~~~ 2021-07-15T22:00:29,759 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:29,759 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:29,759 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:29,759 | ^ 2021-07-15T22:00:29,760 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:29,760 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:29,760 | ^~~~~~~~ 2021-07-15T22:00:29,766 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:29,766 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:29,766 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:00:29,766 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:29,766 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:29,767 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:29,767 | ^ 2021-07-15T22:00:29,767 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:29,767 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:29,768 | ^~~~~~~~ 2021-07-15T22:00:30,198 ./src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:30,199 ./src/formats/abinitformat.cpp:91:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:00:30,199 91 | double acell[3]; // scale of lattice vectors 2021-07-15T22:00:30,199 | ^~~~~ 2021-07-15T22:00:33,198 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:33,198 from include/openbabel/mol.h:35, 2021-07-15T22:00:33,198 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:33,198 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:00:33,199 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:00:33,199 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:33,199 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:00:33,199 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:33,563 ./src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:33,563 ./src/formats/abinitformat.cpp:218:25: warning: ‘natom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:00:33,564 218 | for (int j = 0; j < natom; ++j) { 2021-07-15T22:00:33,564 | ~~^~~~~~~ 2021-07-15T22:00:33,578 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:33,578 from include/openbabel/mol.h:35, 2021-07-15T22:00:33,578 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:33,578 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:00:33,578 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:33,579 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:33,579 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:33,579 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:33,579 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:33,580 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:34,382 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,383 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o /tmp/ccNIlIHw.s 2021-07-15T22:00:34,390 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:34,733 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:34,733 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:34,733 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/acesformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/acesformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:34,744 Using built-in specs. 2021-07-15T22:00:34,745 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:34,746 Target: arm-linux-gnueabihf 2021-07-15T22:00:34,746 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:34,746 Thread model: posix 2021-07-15T22:00:34,746 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:34,746 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:34,747 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,747 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/acesformat.cpp -quiet -dumpbase acesformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/acesformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdre5DH.s 2021-07-15T22:00:34,759 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:34,760 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:34,760 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:34,761 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:34,761 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:34,762 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:34,762 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:34,762 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:34,762 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:34,763 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:34,763 #include "..." search starts here: 2021-07-15T22:00:34,763 #include <...> search starts here: 2021-07-15T22:00:34,763 /usr/include/eigen3 2021-07-15T22:00:34,764 include 2021-07-15T22:00:34,764 /usr/include/python3.9 2021-07-15T22:00:34,764 /usr/include/c++/10 2021-07-15T22:00:34,764 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:34,764 /usr/include/c++/10/backward 2021-07-15T22:00:34,765 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:34,765 /usr/local/include 2021-07-15T22:00:34,765 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:34,766 /usr/include 2021-07-15T22:00:34,766 End of search list. 2021-07-15T22:00:34,766 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:34,766 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:34,767 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:34,781 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:36,711 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:36,712 from include/openbabel/mol.h:43, 2021-07-15T22:00:36,712 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:36,712 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:00:36,712 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:36,713 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:36,713 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:36,713 | ^ 2021-07-15T22:00:36,714 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,714 37 | # define UNUSED(x) x 2021-07-15T22:00:36,714 | ^ 2021-07-15T22:00:37,697 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:37,698 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:37,698 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:00:37,698 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:37,699 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:37,699 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:37,699 | ^ 2021-07-15T22:00:37,700 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:37,700 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:37,700 | ^~~~~~~~ 2021-07-15T22:00:37,703 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:37,703 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:37,704 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:37,704 | ^ 2021-07-15T22:00:37,704 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:37,705 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:37,705 | ^~~~~~~~ 2021-07-15T22:00:37,726 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:37,727 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:37,727 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:37,727 | ^ 2021-07-15T22:00:37,728 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:37,728 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:37,728 | ^~~~~~~~ 2021-07-15T22:00:37,733 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:37,734 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:37,734 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:00:37,734 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:37,735 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:37,735 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:37,735 | ^ 2021-07-15T22:00:37,735 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:37,736 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:37,736 | ^~~~~~~~ 2021-07-15T22:00:40,998 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:40,998 from include/openbabel/mol.h:35, 2021-07-15T22:00:40,998 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:40,999 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:00:40,999 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:00:40,999 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:40,999 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:00:41,000 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,051 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:00:41,051 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:41,903 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::AcesOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:41,904 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,904 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,904 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,904 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,905 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,905 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,905 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,906 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,906 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,906 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,907 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,907 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,907 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,907 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,908 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:41,911 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:41,911 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:41,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:43,071 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,071 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/acesformat.o /tmp/ccdre5DH.s 2021-07-15T22:00:43,090 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:43,607 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:43,607 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:43,608 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/acrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/acrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:43,619 Using built-in specs. 2021-07-15T22:00:43,621 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:43,621 Target: arm-linux-gnueabihf 2021-07-15T22:00:43,621 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:43,621 Thread model: posix 2021-07-15T22:00:43,622 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:43,622 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:43,622 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,622 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/acrformat.cpp -quiet -dumpbase acrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/acrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHp6aRW.s 2021-07-15T22:00:43,635 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:43,635 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:43,635 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:43,636 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:43,636 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:43,636 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:43,636 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:43,636 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:43,637 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:43,637 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:43,637 #include "..." search starts here: 2021-07-15T22:00:43,637 #include <...> search starts here: 2021-07-15T22:00:43,637 /usr/include/eigen3 2021-07-15T22:00:43,638 include 2021-07-15T22:00:43,638 /usr/include/python3.9 2021-07-15T22:00:43,638 /usr/include/c++/10 2021-07-15T22:00:43,638 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:43,638 /usr/include/c++/10/backward 2021-07-15T22:00:43,638 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:43,639 /usr/local/include 2021-07-15T22:00:43,639 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:43,639 /usr/include 2021-07-15T22:00:43,639 End of search list. 2021-07-15T22:00:43,639 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:43,640 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:43,640 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:43,654 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:45,241 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:45,241 from include/openbabel/mol.h:43, 2021-07-15T22:00:45,241 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:00:45,241 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:45,242 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:45,242 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:45,242 | ^ 2021-07-15T22:00:45,242 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:45,243 37 | # define UNUSED(x) x 2021-07-15T22:00:45,243 | ^ 2021-07-15T22:00:46,037 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:46,037 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:00:46,037 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:46,038 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:46,038 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:46,038 | ^ 2021-07-15T22:00:46,038 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:46,039 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:46,039 | ^~~~~~~~ 2021-07-15T22:00:46,041 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:46,042 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:46,042 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:46,042 | ^ 2021-07-15T22:00:46,042 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:46,043 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:46,043 | ^~~~~~~~ 2021-07-15T22:00:46,060 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:46,061 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:46,061 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:46,061 | ^ 2021-07-15T22:00:46,061 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:46,062 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:46,062 | ^~~~~~~~ 2021-07-15T22:00:46,066 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:46,067 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:00:46,067 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:46,067 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:46,067 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:46,067 | ^ 2021-07-15T22:00:46,068 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:46,068 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:46,068 | ^~~~~~~~ 2021-07-15T22:00:46,397 ./src/formats/acrformat.cpp: In member function ‘virtual int OpenBabel::ACRFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:00:46,397 ./src/formats/acrformat.cpp:67:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:00:46,397 67 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:00:46,398 | ~~~~^ 2021-07-15T22:00:46,398 ./src/formats/acrformat.cpp:67:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:00:46,398 67 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:00:46,398 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:00:46,403 ./src/formats/acrformat.cpp: In member function ‘virtual bool OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:46,403 ./src/formats/acrformat.cpp:113:59: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:00:46,403 113 | } else if (sscanf(buf, "Number of Atoms in Crystal=%d\n", &tmp)) { 2021-07-15T22:00:46,404 | ~^ ~~~~ 2021-07-15T22:00:46,404 | | | 2021-07-15T22:00:46,404 | int* unsigned int* 2021-07-15T22:00:46,404 | %d 2021-07-15T22:00:46,405 ./src/formats/acrformat.cpp:120:59: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:00:46,405 120 | } else if (sscanf(buf, "Number of Links in Crystal=%d\n", &tmp)) { 2021-07-15T22:00:46,405 | ~^ ~~~~ 2021-07-15T22:00:46,405 | | | 2021-07-15T22:00:46,406 | int* unsigned int* 2021-07-15T22:00:46,406 | %d 2021-07-15T22:00:48,311 ./src/formats/acrformat.cpp:137:40: warning: ‘scale’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:00:48,311 137 | X = atof((char*)vs[6].c_str())/scale; 2021-07-15T22:00:48,311 | ^~~~~ 2021-07-15T22:00:48,312 ./src/formats/acrformat.cpp:159:5: warning: ‘bonds’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:00:48,312 159 | if ( pmol->NumBonds() != bonds ) { 2021-07-15T22:00:48,312 | ^~ 2021-07-15T22:00:48,312 ./src/formats/acrformat.cpp:163:12: warning: ‘atoms’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:00:48,313 163 | } else if ( pmol->NumAtoms() != atoms ) { 2021-07-15T22:00:48,313 | ^~ 2021-07-15T22:00:49,293 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:49,294 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/acrformat.o /tmp/ccHp6aRW.s 2021-07-15T22:00:49,300 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:49,558 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:49,558 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:49,558 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:49,560 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/adfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/adfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:49,569 Using built-in specs. 2021-07-15T22:00:49,570 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:49,571 Target: arm-linux-gnueabihf 2021-07-15T22:00:49,571 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:49,571 Thread model: posix 2021-07-15T22:00:49,572 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:49,572 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:49,573 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:49,576 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/adfformat.cpp -quiet -dumpbase adfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/adfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctBGdOc.s 2021-07-15T22:00:49,589 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:49,590 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:49,590 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:49,590 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:49,590 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:49,591 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:49,591 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:49,591 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:49,591 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:49,591 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:49,592 #include "..." search starts here: 2021-07-15T22:00:49,592 #include <...> search starts here: 2021-07-15T22:00:49,592 /usr/include/eigen3 2021-07-15T22:00:49,592 include 2021-07-15T22:00:49,592 /usr/include/python3.9 2021-07-15T22:00:49,592 /usr/include/c++/10 2021-07-15T22:00:49,593 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:49,593 /usr/include/c++/10/backward 2021-07-15T22:00:49,593 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:49,593 /usr/local/include 2021-07-15T22:00:49,594 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:49,594 /usr/include 2021-07-15T22:00:49,594 End of search list. 2021-07-15T22:00:49,594 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:49,594 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:49,595 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:49,607 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:51,396 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:51,397 from include/openbabel/mol.h:43, 2021-07-15T22:00:51,397 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:51,397 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:00:51,397 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:51,398 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:51,398 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:51,398 | ^ 2021-07-15T22:00:51,398 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:51,398 37 | # define UNUSED(x) x 2021-07-15T22:00:51,399 | ^ 2021-07-15T22:00:52,120 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:52,121 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:52,121 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:00:52,121 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:52,121 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:52,121 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:52,121 | ^ 2021-07-15T22:00:52,122 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:52,122 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:52,122 | ^~~~~~~~ 2021-07-15T22:00:52,127 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:52,127 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:52,127 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:52,127 | ^ 2021-07-15T22:00:52,127 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:52,128 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:52,128 | ^~~~~~~~ 2021-07-15T22:00:52,149 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:52,149 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:52,149 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:52,149 | ^ 2021-07-15T22:00:52,150 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:52,150 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:52,150 | ^~~~~~~~ 2021-07-15T22:00:52,156 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:52,156 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:00:52,156 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:00:52,156 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:52,156 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:52,157 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:52,157 | ^ 2021-07-15T22:00:52,157 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:52,157 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:52,157 | ^~~~~~~~ 2021-07-15T22:00:52,381 ./src/formats/adfformat.cpp: In member function ‘virtual bool OpenBabel::ADFInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:52,381 ./src/formats/adfformat.cpp:274:39: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:00:52,381 274 | virtual bool ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:00:52,381 | ~~~~~~~~^~~ 2021-07-15T22:00:52,381 ./src/formats/adfformat.cpp:274:58: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:00:52,382 274 | virtual bool ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:00:52,382 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:00:52,397 ./src/formats/adfformat.cpp: In member function ‘virtual int OpenBabel::OBT41Format::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:00:52,397 ./src/formats/adfformat.cpp:400:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:00:52,398 400 | virtual int SkipObjects( int n, OBConversion* pConv ) { return 0; } 2021-07-15T22:00:52,398 | ~~~~^ 2021-07-15T22:00:52,398 ./src/formats/adfformat.cpp:400:51: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:00:52,398 400 | virtual int SkipObjects( int n, OBConversion* pConv ) { return 0; } 2021-07-15T22:00:52,398 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:00:52,402 ./src/formats/adfformat.cpp: In member function ‘void OpenBabel::OBT41Format::AddSCFGrids(std::istream&, OpenBabel::OBGridData&)’: 2021-07-15T22:00:52,402 ./src/formats/adfformat.cpp:448:32: warning: unused parameter ‘is’ [-Wunused-parameter] 2021-07-15T22:00:52,403 448 | void AddSCFGrids( istream& is, OBGridData& t41 ) {} 2021-07-15T22:00:52,403 | ~~~~~~~~~^~ 2021-07-15T22:00:52,403 ./src/formats/adfformat.cpp:448:48: warning: unused parameter ‘t41’ [-Wunused-parameter] 2021-07-15T22:00:52,403 448 | void AddSCFGrids( istream& is, OBGridData& t41 ) {} 2021-07-15T22:00:52,403 | ~~~~~~~~~~~~^~~ 2021-07-15T22:00:52,407 ./src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadBinary(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:52,408 ./src/formats/adfformat.cpp:533:39: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:00:52,408 533 | bool OBT41Format::ReadBinary( OBBase* pOb, OBConversion* pConv ) 2021-07-15T22:00:52,408 | ~~~~~~~~^~~ 2021-07-15T22:00:52,408 ./src/formats/adfformat.cpp:533:58: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:00:52,408 533 | bool OBT41Format::ReadBinary( OBBase* pOb, OBConversion* pConv ) 2021-07-15T22:00:52,408 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:00:52,416 ./src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:52,416 ./src/formats/adfformat.cpp:590:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:00:52,416 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,417 | ^~~~~ 2021-07-15T22:00:52,417 ./src/formats/adfformat.cpp:590:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:00:52,417 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,417 | ^~~~ 2021-07-15T22:00:52,423 ./src/formats/adfformat.cpp:603:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:00:52,423 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,423 | ^~~~~ 2021-07-15T22:00:52,424 ./src/formats/adfformat.cpp:603:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:00:52,424 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,424 | ^~~~ 2021-07-15T22:00:52,443 ./src/formats/adfformat.cpp:625:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:00:52,444 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,444 | ^~~~~ 2021-07-15T22:00:52,444 ./src/formats/adfformat.cpp:625:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:00:52,444 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,444 | ^~~~ 2021-07-15T22:00:52,453 ./src/formats/adfformat.cpp:640:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:00:52,453 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,453 | ^~~~~ 2021-07-15T22:00:52,454 ./src/formats/adfformat.cpp:640:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:00:52,454 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,454 | ^~~~ 2021-07-15T22:00:52,458 ./src/formats/adfformat.cpp:655:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:00:52,459 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,459 | ^~~~~ 2021-07-15T22:00:52,459 ./src/formats/adfformat.cpp:655:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:00:52,459 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:00:52,459 | ^~~~ 2021-07-15T22:00:58,652 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:58,653 from ./src/formats/adfformat.cpp:30: 2021-07-15T22:00:58,653 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::OBT41Format::AtomData}; _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator]’: 2021-07-15T22:00:58,653 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:58,653 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:00:58,653 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:59,125 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:00:59,125 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:59,126 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:59,126 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:00,636 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:00,636 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/adfformat.o /tmp/cctBGdOc.s 2021-07-15T22:01:00,641 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:01,419 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:01,419 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:01,419 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:01,425 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/alchemyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:01,432 Using built-in specs. 2021-07-15T22:01:01,433 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:01,433 Target: arm-linux-gnueabihf 2021-07-15T22:01:01,433 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:01,434 Thread model: posix 2021-07-15T22:01:01,434 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:01,434 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:01,434 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:01,434 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/alchemyformat.cpp -quiet -dumpbase alchemyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchqc5oz.s 2021-07-15T22:01:01,447 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:01,447 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:01,448 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:01,448 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:01,449 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:01,449 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:01,449 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:01,449 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:01,450 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:01,450 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:01,450 #include "..." search starts here: 2021-07-15T22:01:01,450 #include <...> search starts here: 2021-07-15T22:01:01,451 /usr/include/eigen3 2021-07-15T22:01:01,451 include 2021-07-15T22:01:01,451 /usr/include/python3.9 2021-07-15T22:01:01,451 /usr/include/c++/10 2021-07-15T22:01:01,452 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:01,452 /usr/include/c++/10/backward 2021-07-15T22:01:01,452 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:01,453 /usr/local/include 2021-07-15T22:01:01,453 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:01,453 /usr/include 2021-07-15T22:01:01,453 End of search list. 2021-07-15T22:01:01,454 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:01,454 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:01,454 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:01,468 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:03,124 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:03,124 from include/openbabel/mol.h:43, 2021-07-15T22:01:03,125 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:03,125 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:01:03,125 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:03,125 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:03,126 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:03,126 | ^ 2021-07-15T22:01:03,126 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:03,126 37 | # define UNUSED(x) x 2021-07-15T22:01:03,126 | ^ 2021-07-15T22:01:03,915 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:03,915 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:03,915 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:01:03,915 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:03,916 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:03,916 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:03,916 | ^ 2021-07-15T22:01:03,916 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:03,916 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:03,916 | ^~~~~~~~ 2021-07-15T22:01:03,925 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:03,925 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:03,926 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:03,926 | ^ 2021-07-15T22:01:03,926 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:03,927 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:03,927 | ^~~~~~~~ 2021-07-15T22:01:03,945 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:03,945 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:03,945 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:03,945 | ^ 2021-07-15T22:01:03,946 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:03,946 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:03,946 | ^~~~~~~~ 2021-07-15T22:01:03,946 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:03,946 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:03,946 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:01:03,946 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:03,946 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:03,947 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:03,947 | ^ 2021-07-15T22:01:03,947 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:03,947 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:03,947 | ^~~~~~~~ 2021-07-15T22:01:07,060 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:07,060 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o /tmp/cchqc5oz.s 2021-07-15T22:01:07,067 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:07,305 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:07,305 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:07,305 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:07,310 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/amberformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/amberformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:07,315 Using built-in specs. 2021-07-15T22:01:07,317 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:07,317 Target: arm-linux-gnueabihf 2021-07-15T22:01:07,317 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:07,318 Thread model: posix 2021-07-15T22:01:07,318 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:07,318 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:07,319 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:07,323 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/amberformat.cpp -quiet -dumpbase amberformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/amberformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cclt7qv2.s 2021-07-15T22:01:07,338 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:07,339 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:07,340 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:07,341 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:07,341 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:07,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:07,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:07,342 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:07,343 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:07,343 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:07,343 #include "..." search starts here: 2021-07-15T22:01:07,344 #include <...> search starts here: 2021-07-15T22:01:07,344 /usr/include/eigen3 2021-07-15T22:01:07,344 include 2021-07-15T22:01:07,345 /usr/include/python3.9 2021-07-15T22:01:07,346 /usr/include/c++/10 2021-07-15T22:01:07,346 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:07,346 /usr/include/c++/10/backward 2021-07-15T22:01:07,346 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:07,347 /usr/local/include 2021-07-15T22:01:07,347 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:07,347 /usr/include 2021-07-15T22:01:07,347 End of search list. 2021-07-15T22:01:07,355 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:07,355 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:07,356 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:07,367 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:09,262 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:09,262 from include/openbabel/mol.h:43, 2021-07-15T22:01:09,263 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:09,263 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:01:09,263 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:09,263 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:09,263 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:09,263 | ^ 2021-07-15T22:01:09,264 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:09,264 37 | # define UNUSED(x) x 2021-07-15T22:01:09,264 | ^ 2021-07-15T22:01:10,240 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:10,240 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:10,240 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:01:10,240 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:10,240 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:10,241 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:10,241 | ^ 2021-07-15T22:01:10,241 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:10,241 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:10,242 | ^~~~~~~~ 2021-07-15T22:01:10,247 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:10,247 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:10,247 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:10,247 | ^ 2021-07-15T22:01:10,248 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:10,248 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:10,248 | ^~~~~~~~ 2021-07-15T22:01:10,271 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:10,271 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:10,271 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:10,271 | ^ 2021-07-15T22:01:10,272 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:10,272 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:10,272 | ^~~~~~~~ 2021-07-15T22:01:10,279 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:10,279 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:10,279 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:01:10,280 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:10,280 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:10,280 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:10,280 | ^ 2021-07-15T22:01:10,281 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:10,281 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:10,281 | ^~~~~~~~ 2021-07-15T22:01:13,919 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:13,920 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/amberformat.o /tmp/cclt7qv2.s 2021-07-15T22:01:13,929 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:14,193 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:14,193 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:14,193 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:14,195 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/aoforceformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:14,205 Using built-in specs. 2021-07-15T22:01:14,206 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:14,207 Target: arm-linux-gnueabihf 2021-07-15T22:01:14,207 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:14,207 Thread model: posix 2021-07-15T22:01:14,208 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:14,208 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:14,209 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:14,212 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/aoforceformat.cpp -quiet -dumpbase aoforceformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccGG8nHe.s 2021-07-15T22:01:14,225 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:14,225 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:14,226 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:14,226 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:14,227 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:14,227 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:14,227 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:14,228 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:14,228 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:14,228 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:14,228 #include "..." search starts here: 2021-07-15T22:01:14,229 #include <...> search starts here: 2021-07-15T22:01:14,229 /usr/include/eigen3 2021-07-15T22:01:14,229 include 2021-07-15T22:01:14,229 /usr/include/python3.9 2021-07-15T22:01:14,230 /usr/include/c++/10 2021-07-15T22:01:14,230 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:14,230 /usr/include/c++/10/backward 2021-07-15T22:01:14,230 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:14,231 /usr/local/include 2021-07-15T22:01:14,231 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:14,231 /usr/include 2021-07-15T22:01:14,231 End of search list. 2021-07-15T22:01:14,231 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:14,232 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:14,232 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:14,243 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:15,862 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:15,862 from include/openbabel/mol.h:43, 2021-07-15T22:01:15,862 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:15,863 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:01:15,863 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:15,863 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:15,864 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:15,864 | ^ 2021-07-15T22:01:15,864 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:15,864 37 | # define UNUSED(x) x 2021-07-15T22:01:15,865 | ^ 2021-07-15T22:01:16,666 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:16,666 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:16,666 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:01:16,667 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:16,667 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:16,667 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:16,667 | ^ 2021-07-15T22:01:16,667 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:16,667 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:16,668 | ^~~~~~~~ 2021-07-15T22:01:16,670 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:16,670 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:16,671 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:16,671 | ^ 2021-07-15T22:01:16,671 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:16,672 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:16,672 | ^~~~~~~~ 2021-07-15T22:01:16,689 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:16,690 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:16,690 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:16,690 | ^ 2021-07-15T22:01:16,691 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:16,691 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:16,691 | ^~~~~~~~ 2021-07-15T22:01:16,695 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:16,695 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:16,696 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:01:16,696 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:16,696 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:16,697 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:16,697 | ^ 2021-07-15T22:01:16,697 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:16,698 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:16,698 | ^~~~~~~~ 2021-07-15T22:01:20,192 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:01:20,192 from include/openbabel/mol.h:35, 2021-07-15T22:01:20,193 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:20,193 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:01:20,193 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:01:20,193 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:01:20,194 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:01:20,194 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,245 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:01:20,246 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:01:20,558 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::AoforceFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:01:20,558 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,558 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,559 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,560 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,560 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,560 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,562 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,562 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,563 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,563 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,563 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,564 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,564 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:20,565 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:20,565 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:20,565 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:21,436 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:21,437 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o /tmp/ccGG8nHe.s 2021-07-15T22:01:21,443 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:21,837 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:21,838 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:21,840 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:21,840 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/asciiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:21,849 Using built-in specs. 2021-07-15T22:01:21,850 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:21,851 Target: arm-linux-gnueabihf 2021-07-15T22:01:21,851 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:21,852 Thread model: posix 2021-07-15T22:01:21,852 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:21,853 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:21,854 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:21,854 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/asciiformat.cpp -quiet -dumpbase asciiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRsv5WB.s 2021-07-15T22:01:21,864 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:21,864 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:21,865 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:21,866 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:21,866 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:21,866 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:21,867 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:21,867 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:21,867 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:21,868 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:21,868 #include "..." search starts here: 2021-07-15T22:01:21,868 #include <...> search starts here: 2021-07-15T22:01:21,869 /usr/include/eigen3 2021-07-15T22:01:21,869 include 2021-07-15T22:01:21,869 /usr/include/python3.9 2021-07-15T22:01:21,870 /usr/include/c++/10 2021-07-15T22:01:21,870 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:21,870 /usr/include/c++/10/backward 2021-07-15T22:01:21,871 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:21,871 /usr/local/include 2021-07-15T22:01:21,871 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:21,872 /usr/include 2021-07-15T22:01:21,872 End of search list. 2021-07-15T22:01:21,872 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:21,873 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:21,874 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:21,882 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:23,545 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:23,545 from include/openbabel/mol.h:43, 2021-07-15T22:01:23,546 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:23,546 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:01:23,546 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:23,547 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:23,547 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:23,547 | ^ 2021-07-15T22:01:23,548 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:23,548 37 | # define UNUSED(x) x 2021-07-15T22:01:23,549 | ^ 2021-07-15T22:01:24,342 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:24,342 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:24,342 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:01:24,343 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:24,343 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:24,344 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:24,344 | ^ 2021-07-15T22:01:24,345 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:24,345 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:24,346 | ^~~~~~~~ 2021-07-15T22:01:24,346 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:24,347 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:24,347 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:24,348 | ^ 2021-07-15T22:01:24,348 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:24,349 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:24,349 | ^~~~~~~~ 2021-07-15T22:01:24,366 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:24,366 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:24,366 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:24,367 | ^ 2021-07-15T22:01:24,367 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:24,368 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:24,368 | ^~~~~~~~ 2021-07-15T22:01:24,371 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:24,372 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:24,372 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:01:24,373 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:24,373 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:24,373 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:24,374 | ^ 2021-07-15T22:01:24,374 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:24,375 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:24,375 | ^~~~~~~~ 2021-07-15T22:01:24,737 In file included from ./src/formats/asciiformat.cpp:22: 2021-07-15T22:01:24,737 include/openbabel/depict/asciipainter.h: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontFamily(const string&)’: 2021-07-15T22:01:24,738 include/openbabel/depict/asciipainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:01:24,738 34 | void SetFontFamily(const std::string &fontFamily) {} 2021-07-15T22:01:24,739 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:01:27,444 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:27,445 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o /tmp/ccRsv5WB.s 2021-07-15T22:01:27,450 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:27,702 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:27,702 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:27,705 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:27,705 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/balstformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/balstformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:27,712 Using built-in specs. 2021-07-15T22:01:27,713 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:27,714 Target: arm-linux-gnueabihf 2021-07-15T22:01:27,714 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:27,715 Thread model: posix 2021-07-15T22:01:27,715 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:27,716 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:27,717 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:27,718 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/balstformat.cpp -quiet -dumpbase balstformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/balstformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccGTTp3S.s 2021-07-15T22:01:27,727 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:27,728 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:27,728 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:27,729 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:27,729 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:27,730 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:27,730 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:27,730 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:27,731 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:27,731 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:27,731 #include "..." search starts here: 2021-07-15T22:01:27,732 #include <...> search starts here: 2021-07-15T22:01:27,732 /usr/include/eigen3 2021-07-15T22:01:27,732 include 2021-07-15T22:01:27,733 /usr/include/python3.9 2021-07-15T22:01:27,733 /usr/include/c++/10 2021-07-15T22:01:27,733 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:27,734 /usr/include/c++/10/backward 2021-07-15T22:01:27,734 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:27,734 /usr/local/include 2021-07-15T22:01:27,735 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:27,735 /usr/include 2021-07-15T22:01:27,735 End of search list. 2021-07-15T22:01:27,736 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:27,736 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:27,737 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:27,746 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:29,324 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:29,325 from include/openbabel/mol.h:43, 2021-07-15T22:01:29,325 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:29,326 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:01:29,326 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:29,326 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:29,327 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:29,327 | ^ 2021-07-15T22:01:29,327 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:29,328 37 | # define UNUSED(x) x 2021-07-15T22:01:29,328 | ^ 2021-07-15T22:01:30,114 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:30,115 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:30,115 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:01:30,115 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:30,116 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:30,116 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:30,117 | ^ 2021-07-15T22:01:30,117 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:30,118 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:30,118 | ^~~~~~~~ 2021-07-15T22:01:30,119 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:30,120 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:30,120 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:30,120 | ^ 2021-07-15T22:01:30,121 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:30,121 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:30,122 | ^~~~~~~~ 2021-07-15T22:01:30,138 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:30,139 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:30,139 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:30,139 | ^ 2021-07-15T22:01:30,140 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:30,140 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:30,141 | ^~~~~~~~ 2021-07-15T22:01:30,144 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:30,144 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:30,145 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:01:30,145 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:30,145 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:30,146 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:30,146 | ^ 2021-07-15T22:01:30,146 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:30,147 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:30,147 | ^~~~~~~~ 2021-07-15T22:01:33,140 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:33,141 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/balstformat.o /tmp/ccGTTp3S.s 2021-07-15T22:01:33,150 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:33,365 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:33,366 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:33,366 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:33,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/bgfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:33,378 Using built-in specs. 2021-07-15T22:01:33,380 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:33,380 Target: arm-linux-gnueabihf 2021-07-15T22:01:33,381 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:33,381 Thread model: posix 2021-07-15T22:01:33,382 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:33,382 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:33,383 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:33,387 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/bgfformat.cpp -quiet -dumpbase bgfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccYFNRL5.s 2021-07-15T22:01:33,400 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:33,401 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:33,401 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:33,402 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:33,403 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:33,403 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:33,403 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:33,404 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:33,404 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:33,404 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:33,405 #include "..." search starts here: 2021-07-15T22:01:33,405 #include <...> search starts here: 2021-07-15T22:01:33,405 /usr/include/eigen3 2021-07-15T22:01:33,406 include 2021-07-15T22:01:33,406 /usr/include/python3.9 2021-07-15T22:01:33,406 /usr/include/c++/10 2021-07-15T22:01:33,406 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:33,407 /usr/include/c++/10/backward 2021-07-15T22:01:33,407 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:33,407 /usr/local/include 2021-07-15T22:01:33,407 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:33,407 /usr/include 2021-07-15T22:01:33,408 End of search list. 2021-07-15T22:01:33,408 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:33,408 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:33,409 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:33,420 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:35,071 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:35,071 from include/openbabel/mol.h:43, 2021-07-15T22:01:35,072 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:35,072 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:01:35,072 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:35,072 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:35,072 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:35,072 | ^ 2021-07-15T22:01:35,072 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:35,073 37 | # define UNUSED(x) x 2021-07-15T22:01:35,073 | ^ 2021-07-15T22:01:35,859 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:35,859 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:35,860 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:01:35,860 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:35,860 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:35,860 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:35,860 | ^ 2021-07-15T22:01:35,860 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:35,861 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:35,861 | ^~~~~~~~ 2021-07-15T22:01:35,865 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:35,865 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:35,866 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:35,866 | ^ 2021-07-15T22:01:35,866 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:35,866 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:35,866 | ^~~~~~~~ 2021-07-15T22:01:35,885 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:35,885 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:35,886 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:35,886 | ^ 2021-07-15T22:01:35,886 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:35,886 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:35,887 | ^~~~~~~~ 2021-07-15T22:01:35,892 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:35,892 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:35,893 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:01:35,893 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:35,893 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:35,893 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:35,893 | ^ 2021-07-15T22:01:35,893 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:35,894 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:35,894 | ^~~~~~~~ 2021-07-15T22:01:39,848 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:39,848 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o /tmp/ccYFNRL5.s 2021-07-15T22:01:39,854 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:40,234 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:40,235 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:40,235 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:40,240 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/boxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/boxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:40,247 Using built-in specs. 2021-07-15T22:01:40,248 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:40,249 Target: arm-linux-gnueabihf 2021-07-15T22:01:40,249 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:40,249 Thread model: posix 2021-07-15T22:01:40,249 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:40,249 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:40,250 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:40,250 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/boxformat.cpp -quiet -dumpbase boxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/boxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccCMBCbi.s 2021-07-15T22:01:40,266 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:40,266 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:40,266 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:40,267 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:40,267 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:40,268 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:40,268 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:40,268 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:40,268 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:40,268 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:40,269 #include "..." search starts here: 2021-07-15T22:01:40,269 #include <...> search starts here: 2021-07-15T22:01:40,269 /usr/include/eigen3 2021-07-15T22:01:40,269 include 2021-07-15T22:01:40,269 /usr/include/python3.9 2021-07-15T22:01:40,269 /usr/include/c++/10 2021-07-15T22:01:40,270 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:40,270 /usr/include/c++/10/backward 2021-07-15T22:01:40,270 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:40,270 /usr/local/include 2021-07-15T22:01:40,270 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:40,270 /usr/include 2021-07-15T22:01:40,270 End of search list. 2021-07-15T22:01:40,271 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:40,271 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:40,271 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:40,288 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:42,216 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:42,217 from include/openbabel/mol.h:43, 2021-07-15T22:01:42,217 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:42,217 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:01:42,217 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:42,218 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:42,218 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:42,218 | ^ 2021-07-15T22:01:42,218 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:42,219 37 | # define UNUSED(x) x 2021-07-15T22:01:42,219 | ^ 2021-07-15T22:01:43,202 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:43,202 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:43,202 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:01:43,202 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:43,203 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:43,203 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:43,203 | ^ 2021-07-15T22:01:43,203 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:43,204 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:43,204 | ^~~~~~~~ 2021-07-15T22:01:43,207 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:43,208 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:43,208 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:43,208 | ^ 2021-07-15T22:01:43,208 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:43,208 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:43,209 | ^~~~~~~~ 2021-07-15T22:01:43,230 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:43,231 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:43,231 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:43,231 | ^ 2021-07-15T22:01:43,231 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:43,232 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:43,232 | ^~~~~~~~ 2021-07-15T22:01:43,238 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:43,238 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:43,238 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:01:43,238 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:43,239 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:43,239 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:43,239 | ^ 2021-07-15T22:01:43,239 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:43,239 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:43,240 | ^~~~~~~~ 2021-07-15T22:01:47,349 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:47,350 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/boxformat.o /tmp/ccCMBCbi.s 2021-07-15T22:01:47,355 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:47,668 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:47,668 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:47,668 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:47,673 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cacaoformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:47,680 Using built-in specs. 2021-07-15T22:01:47,681 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:47,682 Target: arm-linux-gnueabihf 2021-07-15T22:01:47,682 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:47,682 Thread model: posix 2021-07-15T22:01:47,682 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:47,682 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:47,683 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:47,683 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cacaoformat.cpp -quiet -dumpbase cacaoformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdh2wRv.s 2021-07-15T22:01:47,697 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:47,697 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:47,697 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:47,698 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:47,698 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:47,698 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:47,698 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:47,699 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:47,699 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:47,699 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:47,699 #include "..." search starts here: 2021-07-15T22:01:47,699 #include <...> search starts here: 2021-07-15T22:01:47,700 /usr/include/eigen3 2021-07-15T22:01:47,700 include 2021-07-15T22:01:47,700 /usr/include/python3.9 2021-07-15T22:01:47,700 /usr/include/c++/10 2021-07-15T22:01:47,700 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:47,700 /usr/include/c++/10/backward 2021-07-15T22:01:47,701 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:47,701 /usr/local/include 2021-07-15T22:01:47,701 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:47,701 /usr/include 2021-07-15T22:01:47,701 End of search list. 2021-07-15T22:01:47,701 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:47,702 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:47,702 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:47,719 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:49,385 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:49,385 from include/openbabel/mol.h:43, 2021-07-15T22:01:49,386 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:49,386 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:01:49,386 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:49,387 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:49,387 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:49,387 | ^ 2021-07-15T22:01:49,387 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:49,388 37 | # define UNUSED(x) x 2021-07-15T22:01:49,388 | ^ 2021-07-15T22:01:50,176 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:50,176 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:50,177 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:01:50,177 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:50,177 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:50,178 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:50,178 | ^ 2021-07-15T22:01:50,178 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:50,179 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:50,179 | ^~~~~~~~ 2021-07-15T22:01:50,181 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:50,181 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:50,181 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:50,182 | ^ 2021-07-15T22:01:50,182 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:50,182 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:50,183 | ^~~~~~~~ 2021-07-15T22:01:50,200 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:50,200 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:50,200 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:50,201 | ^ 2021-07-15T22:01:50,201 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:50,201 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:50,202 | ^~~~~~~~ 2021-07-15T22:01:50,205 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:50,206 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:50,206 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:01:50,206 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:50,207 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:50,207 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:50,207 | ^ 2021-07-15T22:01:50,208 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:50,208 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:50,208 | ^~~~~~~~ 2021-07-15T22:01:53,755 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:53,755 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o /tmp/ccdh2wRv.s 2021-07-15T22:01:53,762 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:54,088 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:54,088 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:54,088 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:54,093 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cacheformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:54,100 Using built-in specs. 2021-07-15T22:01:54,102 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:54,102 Target: arm-linux-gnueabihf 2021-07-15T22:01:54,102 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:54,102 Thread model: posix 2021-07-15T22:01:54,103 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:54,103 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:54,103 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:54,103 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cacheformat.cpp -quiet -dumpbase cacheformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctdJhTJ.s 2021-07-15T22:01:54,117 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:54,118 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:54,118 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:54,118 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:54,118 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:54,119 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:54,119 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:54,119 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:54,119 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:54,119 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:54,120 #include "..." search starts here: 2021-07-15T22:01:54,120 #include <...> search starts here: 2021-07-15T22:01:54,120 /usr/include/eigen3 2021-07-15T22:01:54,120 include 2021-07-15T22:01:54,120 /usr/include/python3.9 2021-07-15T22:01:54,121 /usr/include/c++/10 2021-07-15T22:01:54,121 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:54,121 /usr/include/c++/10/backward 2021-07-15T22:01:54,121 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:54,121 /usr/local/include 2021-07-15T22:01:54,121 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:54,121 /usr/include 2021-07-15T22:01:54,122 End of search list. 2021-07-15T22:01:54,122 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:54,122 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:54,122 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:54,139 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:56,088 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:56,088 from include/openbabel/mol.h:43, 2021-07-15T22:01:56,088 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:56,088 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:01:56,089 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:56,089 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:56,089 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:56,089 | ^ 2021-07-15T22:01:56,090 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:56,090 37 | # define UNUSED(x) x 2021-07-15T22:01:56,090 | ^ 2021-07-15T22:01:57,073 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:57,074 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:57,074 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:01:57,074 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:57,074 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:57,075 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:57,075 | ^ 2021-07-15T22:01:57,075 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:57,075 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:57,076 | ^~~~~~~~ 2021-07-15T22:01:57,079 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:57,079 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:57,079 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:57,080 | ^ 2021-07-15T22:01:57,080 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:57,080 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:57,080 | ^~~~~~~~ 2021-07-15T22:01:57,102 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:57,103 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:57,103 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:57,103 | ^ 2021-07-15T22:01:57,103 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:57,104 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:57,104 | ^~~~~~~~ 2021-07-15T22:01:57,110 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:57,110 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:01:57,110 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:01:57,110 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:57,110 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:57,111 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:57,111 | ^ 2021-07-15T22:01:57,111 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:57,111 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:57,111 | ^~~~~~~~ 2021-07-15T22:02:00,524 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:00,525 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o /tmp/cctdJhTJ.s 2021-07-15T22:02:00,531 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:00,771 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:00,772 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:00,772 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:00,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/carformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/carformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:00,783 Using built-in specs. 2021-07-15T22:02:00,784 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:00,784 Target: arm-linux-gnueabihf 2021-07-15T22:02:00,784 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:00,785 Thread model: posix 2021-07-15T22:02:00,785 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:00,785 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:00,785 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:00,785 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/carformat.cpp -quiet -dumpbase carformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/carformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchiyWc0.s 2021-07-15T22:02:00,799 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:00,799 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:00,800 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:00,800 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:00,800 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:00,800 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:00,801 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:00,801 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:00,801 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:00,801 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:00,801 #include "..." search starts here: 2021-07-15T22:02:00,802 #include <...> search starts here: 2021-07-15T22:02:00,802 /usr/include/eigen3 2021-07-15T22:02:00,802 include 2021-07-15T22:02:00,802 /usr/include/python3.9 2021-07-15T22:02:00,802 /usr/include/c++/10 2021-07-15T22:02:00,802 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:00,803 /usr/include/c++/10/backward 2021-07-15T22:02:00,803 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:00,803 /usr/local/include 2021-07-15T22:02:00,803 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:00,803 /usr/include 2021-07-15T22:02:00,804 End of search list. 2021-07-15T22:02:00,804 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:00,804 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:00,804 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:00,820 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:02,499 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:02,500 from include/openbabel/mol.h:43, 2021-07-15T22:02:02,500 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:02,500 from ./src/formats/carformat.cpp:18: 2021-07-15T22:02:02,501 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:02,501 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:02,501 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:02,501 | ^ 2021-07-15T22:02:02,502 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:02,502 37 | # define UNUSED(x) x 2021-07-15T22:02:02,502 | ^ 2021-07-15T22:02:03,291 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:03,292 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:03,292 from ./src/formats/carformat.cpp:18: 2021-07-15T22:02:03,292 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:03,292 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:03,293 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:03,293 | ^ 2021-07-15T22:02:03,293 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:03,293 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:03,294 | ^~~~~~~~ 2021-07-15T22:02:03,296 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:03,296 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:03,297 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:03,297 | ^ 2021-07-15T22:02:03,297 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:03,297 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:03,297 | ^~~~~~~~ 2021-07-15T22:02:03,315 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:03,315 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:03,315 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:03,316 | ^ 2021-07-15T22:02:03,316 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:03,316 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:03,316 | ^~~~~~~~ 2021-07-15T22:02:03,321 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:03,321 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:03,321 from ./src/formats/carformat.cpp:18: 2021-07-15T22:02:03,321 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:03,321 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:03,322 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:03,322 | ^ 2021-07-15T22:02:03,322 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:03,322 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:03,323 | ^~~~~~~~ 2021-07-15T22:02:06,497 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:06,497 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/carformat.o /tmp/cchiyWc0.s 2021-07-15T22:02:06,503 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:06,749 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:06,750 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:06,750 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:06,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/castepformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/castepformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:06,761 Using built-in specs. 2021-07-15T22:02:06,762 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:06,763 Target: arm-linux-gnueabihf 2021-07-15T22:02:06,763 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:06,763 Thread model: posix 2021-07-15T22:02:06,763 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:06,763 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:06,763 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:06,763 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/castepformat.cpp -quiet -dumpbase castepformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/castepformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccXFduqq.s 2021-07-15T22:02:06,776 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:06,776 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:06,777 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:06,777 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:06,777 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:06,778 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:06,778 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:06,778 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:06,778 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:06,779 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:06,779 #include "..." search starts here: 2021-07-15T22:02:06,779 #include <...> search starts here: 2021-07-15T22:02:06,779 /usr/include/eigen3 2021-07-15T22:02:06,779 include 2021-07-15T22:02:06,779 /usr/include/python3.9 2021-07-15T22:02:06,780 /usr/include/c++/10 2021-07-15T22:02:06,780 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:06,780 /usr/include/c++/10/backward 2021-07-15T22:02:06,780 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:06,780 /usr/local/include 2021-07-15T22:02:06,781 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:06,781 /usr/include 2021-07-15T22:02:06,781 End of search list. 2021-07-15T22:02:06,781 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:06,781 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:06,782 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:06,797 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:08,378 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:08,378 from include/openbabel/mol.h:43, 2021-07-15T22:02:08,378 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:08,379 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:02:08,379 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:08,379 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:08,379 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:08,380 | ^ 2021-07-15T22:02:08,380 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:08,380 37 | # define UNUSED(x) x 2021-07-15T22:02:08,380 | ^ 2021-07-15T22:02:09,175 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:09,175 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:09,175 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:02:09,176 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:09,176 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:09,176 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:09,176 | ^ 2021-07-15T22:02:09,177 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:09,177 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:09,177 | ^~~~~~~~ 2021-07-15T22:02:09,179 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:09,180 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:09,180 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:09,180 | ^ 2021-07-15T22:02:09,180 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:09,181 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:09,181 | ^~~~~~~~ 2021-07-15T22:02:09,198 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:09,199 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:09,199 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:09,199 | ^ 2021-07-15T22:02:09,199 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:09,200 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:09,200 | ^~~~~~~~ 2021-07-15T22:02:09,204 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:09,204 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:09,205 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:02:09,205 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:09,205 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:09,205 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:09,206 | ^ 2021-07-15T22:02:09,206 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:09,206 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:09,206 | ^~~~~~~~ 2021-07-15T22:02:09,534 ./src/formats/castepformat.cpp: In member function ‘virtual int OpenBabel::CASTEPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:02:09,534 ./src/formats/castepformat.cpp:50:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:02:09,534 50 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:02:09,535 | ~~~~^ 2021-07-15T22:02:09,535 ./src/formats/castepformat.cpp:50:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:02:09,535 50 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:02:09,535 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:02:12,057 ./src/formats/castepformat.cpp: In member function ‘virtual bool OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:02:12,057 ./src/formats/castepformat.cpp:187:21: warning: ‘volume’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:02:12,057 187 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; 2021-07-15T22:02:12,058 | ~~~~~~~^~~~~~~~~~ 2021-07-15T22:02:12,058 ./src/formats/castepformat.cpp:187:21: warning: ‘pressure’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:02:12,751 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:12,752 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/castepformat.o /tmp/ccXFduqq.s 2021-07-15T22:02:12,756 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:13,034 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:13,035 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:13,035 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:13,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cccformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cccformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:13,046 Using built-in specs. 2021-07-15T22:02:13,047 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:13,048 Target: arm-linux-gnueabihf 2021-07-15T22:02:13,048 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:13,048 Thread model: posix 2021-07-15T22:02:13,048 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:13,048 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:13,049 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:13,049 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cccformat.cpp -quiet -dumpbase cccformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cccformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccKrT89D.s 2021-07-15T22:02:13,061 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:13,062 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:13,063 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:13,063 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:13,063 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:13,064 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:13,064 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:13,064 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:13,065 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:13,065 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:13,065 #include "..." search starts here: 2021-07-15T22:02:13,065 #include <...> search starts here: 2021-07-15T22:02:13,066 /usr/include/eigen3 2021-07-15T22:02:13,066 include 2021-07-15T22:02:13,066 /usr/include/python3.9 2021-07-15T22:02:13,066 /usr/include/c++/10 2021-07-15T22:02:13,067 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:13,067 /usr/include/c++/10/backward 2021-07-15T22:02:13,067 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:13,067 /usr/local/include 2021-07-15T22:02:13,068 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:13,068 /usr/include 2021-07-15T22:02:13,068 End of search list. 2021-07-15T22:02:13,068 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:13,069 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:13,069 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:13,081 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:14,644 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:14,644 from include/openbabel/mol.h:43, 2021-07-15T22:02:14,645 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:14,645 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:02:14,645 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:14,646 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:14,646 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:14,646 | ^ 2021-07-15T22:02:14,646 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:14,647 37 | # define UNUSED(x) x 2021-07-15T22:02:14,647 | ^ 2021-07-15T22:02:15,429 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:15,430 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:15,430 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:02:15,430 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:15,430 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:15,431 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:15,431 | ^ 2021-07-15T22:02:15,431 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:15,432 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:15,432 | ^~~~~~~~ 2021-07-15T22:02:15,434 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:15,434 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:15,434 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:15,435 | ^ 2021-07-15T22:02:15,435 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:15,435 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:15,436 | ^~~~~~~~ 2021-07-15T22:02:15,453 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:15,453 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:15,453 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:15,454 | ^ 2021-07-15T22:02:15,454 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:15,454 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:15,455 | ^~~~~~~~ 2021-07-15T22:02:15,458 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:15,459 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:15,459 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:02:15,459 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:15,460 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:15,460 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:15,460 | ^ 2021-07-15T22:02:15,461 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:15,461 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:15,461 | ^~~~~~~~ 2021-07-15T22:02:18,247 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:18,247 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cccformat.o /tmp/ccKrT89D.s 2021-07-15T22:02:18,255 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:18,459 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:18,460 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:18,460 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:18,461 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chem3dformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:18,473 Using built-in specs. 2021-07-15T22:02:18,474 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:18,474 Target: arm-linux-gnueabihf 2021-07-15T22:02:18,475 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:18,475 Thread model: posix 2021-07-15T22:02:18,475 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:18,475 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:18,475 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:18,476 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chem3dformat.cpp -quiet -dumpbase chem3dformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmYZVHT.s 2021-07-15T22:02:18,491 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:18,492 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:18,492 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:18,493 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:18,494 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:18,494 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:18,494 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:18,494 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:18,495 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:18,495 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:18,495 #include "..." search starts here: 2021-07-15T22:02:18,495 #include <...> search starts here: 2021-07-15T22:02:18,495 /usr/include/eigen3 2021-07-15T22:02:18,496 include 2021-07-15T22:02:18,496 /usr/include/python3.9 2021-07-15T22:02:18,496 /usr/include/c++/10 2021-07-15T22:02:18,496 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:18,496 /usr/include/c++/10/backward 2021-07-15T22:02:18,496 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:18,497 /usr/local/include 2021-07-15T22:02:18,497 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:18,497 /usr/include 2021-07-15T22:02:18,497 End of search list. 2021-07-15T22:02:18,497 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:18,498 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:18,498 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:18,514 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:20,513 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:20,513 from include/openbabel/mol.h:43, 2021-07-15T22:02:20,513 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:20,514 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:02:20,514 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:20,514 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:20,514 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:20,515 | ^ 2021-07-15T22:02:20,515 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:20,515 37 | # define UNUSED(x) x 2021-07-15T22:02:20,515 | ^ 2021-07-15T22:02:21,366 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:21,367 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:21,367 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:02:21,367 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:21,367 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:21,367 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:21,368 | ^ 2021-07-15T22:02:21,368 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:21,368 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:21,368 | ^~~~~~~~ 2021-07-15T22:02:21,372 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:21,372 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:21,372 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:21,373 | ^ 2021-07-15T22:02:21,373 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:21,373 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:21,373 | ^~~~~~~~ 2021-07-15T22:02:21,395 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:21,396 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:21,396 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:21,396 | ^ 2021-07-15T22:02:21,396 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:21,397 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:21,397 | ^~~~~~~~ 2021-07-15T22:02:21,402 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:21,402 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:21,403 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:02:21,403 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:21,403 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:21,403 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:21,403 | ^ 2021-07-15T22:02:21,404 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:21,404 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:21,404 | ^~~~~~~~ 2021-07-15T22:02:24,594 ./src/formats/chem3dformat.cpp: In static member function ‘static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)’: 2021-07-15T22:02:24,594 ./src/formats/chem3dformat.cpp:298:52: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=] 2021-07-15T22:02:24,594 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); 2021-07-15T22:02:24,595 | ^~ 2021-07-15T22:02:24,595 ./src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461] 2021-07-15T22:02:24,595 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); 2021-07-15T22:02:24,595 | ^~~~ 2021-07-15T22:02:24,595 In file included from /usr/include/stdio.h:867, 2021-07-15T22:02:24,596 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:02:24,596 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:02:24,596 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:02:24,596 from /usr/include/c++/10/string:55, 2021-07-15T22:02:24,596 from /usr/include/c++/10/bits/locale_classes.h:40, 2021-07-15T22:02:24,596 from /usr/include/c++/10/bits/ios_base.h:41, 2021-07-15T22:02:24,597 from /usr/include/c++/10/ios:42, 2021-07-15T22:02:24,597 from /usr/include/c++/10/ostream:38, 2021-07-15T22:02:24,597 from include/openbabel/math/matrix3x3.h:24, 2021-07-15T22:02:24,597 from ./src/formats/chem3dformat.cpp:17: 2021-07-15T22:02:24,597 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 4 2021-07-15T22:02:24,598 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:02:24,598 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:24,598 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:02:24,598 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:25,378 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:25,378 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o /tmp/ccmYZVHT.s 2021-07-15T22:02:25,386 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:25,643 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:25,643 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:25,643 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:25,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemdrawcdx.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:25,657 Using built-in specs. 2021-07-15T22:02:25,659 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:25,659 Target: arm-linux-gnueabihf 2021-07-15T22:02:25,659 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:25,660 Thread model: posix 2021-07-15T22:02:25,660 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:25,660 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:25,660 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:25,660 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemdrawcdx.cpp -quiet -dumpbase chemdrawcdx.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccffcvF8.s 2021-07-15T22:02:25,678 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:25,678 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:25,678 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:25,679 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:25,679 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:25,679 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:25,679 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:25,680 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:25,680 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:25,680 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:25,680 #include "..." search starts here: 2021-07-15T22:02:25,681 #include <...> search starts here: 2021-07-15T22:02:25,681 /usr/include/eigen3 2021-07-15T22:02:25,681 include 2021-07-15T22:02:25,681 /usr/include/python3.9 2021-07-15T22:02:25,681 /usr/include/c++/10 2021-07-15T22:02:25,681 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:25,682 /usr/include/c++/10/backward 2021-07-15T22:02:25,682 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:25,682 /usr/local/include 2021-07-15T22:02:25,682 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:25,682 /usr/include 2021-07-15T22:02:25,682 End of search list. 2021-07-15T22:02:25,683 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:25,683 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:25,683 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:25,699 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:27,382 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:27,382 from include/openbabel/mol.h:43, 2021-07-15T22:02:27,382 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:27,382 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:02:27,382 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:27,382 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:27,383 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:27,383 | ^ 2021-07-15T22:02:27,383 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:27,383 37 | # define UNUSED(x) x 2021-07-15T22:02:27,383 | ^ 2021-07-15T22:02:28,218 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:28,218 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:28,219 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:02:28,219 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,219 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,219 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:28,219 | ^ 2021-07-15T22:02:28,220 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:28,220 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:28,220 | ^~~~~~~~ 2021-07-15T22:02:28,225 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,226 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,226 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:28,226 | ^ 2021-07-15T22:02:28,226 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:28,227 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:28,227 | ^~~~~~~~ 2021-07-15T22:02:28,250 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,250 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,251 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:28,251 | ^ 2021-07-15T22:02:28,251 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:28,252 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:28,252 | ^~~~~~~~ 2021-07-15T22:02:28,258 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:28,259 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:28,259 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:02:28,259 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,259 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,259 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:28,260 | ^ 2021-07-15T22:02:28,260 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:28,260 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:28,260 | ^~~~~~~~ 2021-07-15T22:02:29,228 ./src/formats/chemdrawcdx.cpp: In member function ‘virtual bool OpenBabel::ChemDrawBinaryXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:02:29,228 ./src/formats/chemdrawcdx.cpp:205:50: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:02:29,228 205 | bool ChemDrawBinaryXFormat::ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:02:29,229 | ~~~~~~~~^~~ 2021-07-15T22:02:29,280 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBReaction*)’: 2021-07-15T22:02:29,280 ./src/formats/chemdrawcdx.cpp:331:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:02:29,281 331 | for(unsigned i=0;iNumAtoms();++idx) 2021-07-15T22:02:29,377 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:29,383 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: 2021-07-15T22:02:29,383 ./src/formats/chemdrawcdx.cpp:454:27: warning: variable ‘hasElement’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:02:29,383 454 | bool isAlias=false, hasElement=false; 2021-07-15T22:02:29,384 | ^~~~~~~~~~ 2021-07-15T22:02:29,388 ./src/formats/chemdrawcdx.cpp:446:84: warning: unused parameter ‘updown’ [-Wunused-parameter] 2021-07-15T22:02:29,389 446 | map& atommap, map& updown) 2021-07-15T22:02:29,389 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:02:31,603 ./src/formats/chemdrawcdx.cpp: In member function ‘std::string OpenBabel::ChemDrawBinaryXFormat::DoText(OpenBabel::CDXReader&)’: 2021-07-15T22:02:31,603 ./src/formats/chemdrawcdx.cpp:625:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:02:31,603 625 | ss >> text; 2021-07-15T22:02:31,603 | ^~~~ 2021-07-15T22:02:31,603 ./src/formats/chemdrawcdx.cpp:626:5: note: here 2021-07-15T22:02:31,604 626 | default: 2021-07-15T22:02:31,604 | ^~~~~~~ 2021-07-15T22:02:37,993 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: 2021-07-15T22:02:37,994 ./src/formats/chemdrawcdx.cpp:591:28: warning: ‘endIdx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:02:37,994 591 | if(!order || !bgnIdx || !endIdx) 2021-07-15T22:02:37,994 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:02:37,994 ./src/formats/chemdrawcdx.cpp:591:17: warning: ‘bgnIdx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:02:37,994 591 | if(!order || !bgnIdx || !endIdx) 2021-07-15T22:02:37,995 | ~~~~~~~^~~~~~~~~~ 2021-07-15T22:02:39,582 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:39,582 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o /tmp/ccffcvF8.s 2021-07-15T22:02:39,588 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:40,556 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:40,556 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:40,556 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:40,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemdrawct.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:40,572 Using built-in specs. 2021-07-15T22:02:40,573 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:40,573 Target: arm-linux-gnueabihf 2021-07-15T22:02:40,574 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:40,574 Thread model: posix 2021-07-15T22:02:40,574 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:40,574 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:40,574 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:40,574 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemdrawct.cpp -quiet -dumpbase chemdrawct.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc7dXtiu.s 2021-07-15T22:02:40,589 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:40,589 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:40,590 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:40,591 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:40,591 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:40,591 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:40,592 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:40,592 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:40,592 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:40,592 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:40,592 #include "..." search starts here: 2021-07-15T22:02:40,593 #include <...> search starts here: 2021-07-15T22:02:40,593 /usr/include/eigen3 2021-07-15T22:02:40,593 include 2021-07-15T22:02:40,593 /usr/include/python3.9 2021-07-15T22:02:40,593 /usr/include/c++/10 2021-07-15T22:02:40,593 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:40,594 /usr/include/c++/10/backward 2021-07-15T22:02:40,594 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:40,594 /usr/local/include 2021-07-15T22:02:40,594 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:40,594 /usr/include 2021-07-15T22:02:40,594 End of search list. 2021-07-15T22:02:40,595 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:40,595 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:40,595 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:40,609 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:42,200 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:42,200 from include/openbabel/mol.h:43, 2021-07-15T22:02:42,200 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:42,200 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:02:42,200 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:42,200 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:42,201 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:42,201 | ^ 2021-07-15T22:02:42,201 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:42,201 37 | # define UNUSED(x) x 2021-07-15T22:02:42,201 | ^ 2021-07-15T22:02:43,000 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:43,000 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:43,000 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:02:43,001 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:43,001 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:43,001 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:43,001 | ^ 2021-07-15T22:02:43,001 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:43,002 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:43,002 | ^~~~~~~~ 2021-07-15T22:02:43,006 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:43,006 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:43,007 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:43,007 | ^ 2021-07-15T22:02:43,007 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:43,007 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:43,007 | ^~~~~~~~ 2021-07-15T22:02:43,026 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:43,027 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:43,027 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:43,027 | ^ 2021-07-15T22:02:43,027 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:43,028 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:43,028 | ^~~~~~~~ 2021-07-15T22:02:43,033 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:43,034 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:02:43,034 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:02:43,034 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:43,034 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:43,034 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:43,034 | ^ 2021-07-15T22:02:43,035 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:43,035 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:43,035 | ^~~~~~~~ 2021-07-15T22:02:43,380 ./src/formats/chemdrawct.cpp: In member function ‘virtual bool OpenBabel::ChemDrawFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:02:43,380 ./src/formats/chemdrawct.cpp:130:22: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:02:43,380 130 | sscanf(buffer," %d %d", &natoms, &nbonds); 2021-07-15T22:02:43,381 | ~^ ~~~~~~~ 2021-07-15T22:02:43,381 | | | 2021-07-15T22:02:43,381 | int* unsigned int* 2021-07-15T22:02:43,381 | %d 2021-07-15T22:02:43,381 ./src/formats/chemdrawct.cpp:130:25: warning: format ‘%d’ expects argument of type ‘int*’, but argument 4 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:02:43,382 130 | sscanf(buffer," %d %d", &natoms, &nbonds); 2021-07-15T22:02:43,382 | ~^ ~~~~~~~ 2021-07-15T22:02:43,382 | | | 2021-07-15T22:02:43,382 | int* unsigned int* 2021-07-15T22:02:43,382 | %d 2021-07-15T22:02:43,384 ./src/formats/chemdrawct.cpp:153:32: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:02:43,385 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:02:43,385 | ~^ ~~~~ 2021-07-15T22:02:43,385 | | | 2021-07-15T22:02:43,385 | int* unsigned int* 2021-07-15T22:02:43,385 | %d 2021-07-15T22:02:43,386 ./src/formats/chemdrawct.cpp:153:34: warning: format ‘%d’ expects argument of type ‘int*’, but argument 4 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:02:43,386 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:02:43,386 | ~^ ~~~~ 2021-07-15T22:02:43,386 | | | 2021-07-15T22:02:43,386 | int* unsigned int* 2021-07-15T22:02:43,387 | %d 2021-07-15T22:02:43,387 ./src/formats/chemdrawct.cpp:153:36: warning: format ‘%d’ expects argument of type ‘int*’, but argument 5 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:02:43,387 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:02:43,387 | ~^ ~~~~~~ 2021-07-15T22:02:43,388 | | | 2021-07-15T22:02:43,388 | int* unsigned int* 2021-07-15T22:02:43,388 | %d 2021-07-15T22:02:46,010 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:46,010 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o /tmp/cc7dXtiu.s 2021-07-15T22:02:46,016 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:46,279 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:46,279 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:46,279 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:46,284 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemkinformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:46,289 Using built-in specs. 2021-07-15T22:02:46,290 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:46,291 Target: arm-linux-gnueabihf 2021-07-15T22:02:46,291 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:46,291 Thread model: posix 2021-07-15T22:02:46,292 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:46,292 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:46,292 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:46,293 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemkinformat.cpp -quiet -dumpbase chemkinformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccjtGbUH.s 2021-07-15T22:02:46,305 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:46,305 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:46,305 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:46,306 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:46,306 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:46,306 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:46,306 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:46,307 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:46,307 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:46,307 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:46,308 #include "..." search starts here: 2021-07-15T22:02:46,308 #include <...> search starts here: 2021-07-15T22:02:46,308 /usr/include/eigen3 2021-07-15T22:02:46,308 include 2021-07-15T22:02:46,308 /usr/include/python3.9 2021-07-15T22:02:46,309 /usr/include/c++/10 2021-07-15T22:02:46,309 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:46,309 /usr/include/c++/10/backward 2021-07-15T22:02:46,309 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:46,310 /usr/local/include 2021-07-15T22:02:46,310 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:46,310 /usr/include 2021-07-15T22:02:46,310 End of search list. 2021-07-15T22:02:46,311 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:46,311 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:46,311 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:46,326 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:48,140 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:48,140 from include/openbabel/mol.h:43, 2021-07-15T22:02:48,141 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:02:48,141 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:48,141 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:48,142 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:48,142 | ^ 2021-07-15T22:02:48,142 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:48,142 37 | # define UNUSED(x) x 2021-07-15T22:02:48,143 | ^ 2021-07-15T22:02:48,927 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:48,927 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:02:48,927 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:48,928 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:48,928 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:48,928 | ^ 2021-07-15T22:02:48,929 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:48,929 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:48,930 | ^~~~~~~~ 2021-07-15T22:02:48,931 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:48,932 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:48,932 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:48,932 | ^ 2021-07-15T22:02:48,933 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:48,933 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:48,933 | ^~~~~~~~ 2021-07-15T22:02:48,951 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:48,951 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:48,951 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:48,952 | ^ 2021-07-15T22:02:48,952 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:48,952 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:48,953 | ^~~~~~~~ 2021-07-15T22:02:48,956 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:48,957 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:02:48,957 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:48,957 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:48,958 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:48,958 | ^ 2021-07-15T22:02:48,958 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:48,959 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:48,959 | ^~~~~~~~ 2021-07-15T22:02:49,439 In file included from ./src/formats/chemkinformat.cpp:29: 2021-07-15T22:02:49,439 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBRateData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:49,440 include/openbabel/kinetics.h:44:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:02:49,440 44 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBRateData(*this);} 2021-07-15T22:02:49,440 | ~~~~~~~~^~~~~~ 2021-07-15T22:02:49,461 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBNasaThermoData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:49,462 include/openbabel/kinetics.h:144:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:02:49,462 144 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBNasaThermoData(*this);} 2021-07-15T22:02:49,462 | ~~~~~~~~^~~~~~ 2021-07-15T22:02:49,582 ./src/formats/chemkinformat.cpp: In member function ‘bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)’: 2021-07-15T22:02:49,582 ./src/formats/chemkinformat.cpp:634:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:02:49,582 634 | for(int i=0;iReactionType) 2021-07-15T22:02:49,701 | ^ 2021-07-15T22:02:49,702 ./src/formats/chemkinformat.cpp:905:11: warning: enumeration value ‘THREEBODY’ not handled in switch [-Wswitch] 2021-07-15T22:02:49,745 ./src/formats/chemkinformat.cpp:984:11: warning: enumeration value ‘ARRHENIUS’ not handled in switch [-Wswitch] 2021-07-15T22:02:49,745 984 | switch(pRD->ReactionType) 2021-07-15T22:02:49,746 | ^ 2021-07-15T22:02:49,746 ./src/formats/chemkinformat.cpp:984:11: warning: enumeration value ‘SRI’ not handled in switch [-Wswitch] 2021-07-15T22:03:04,184 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:04,184 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o /tmp/ccjtGbUH.s 2021-07-15T22:03:04,189 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:05,760 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:05,760 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:05,760 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:05,766 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemtoolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:05,775 Using built-in specs. 2021-07-15T22:03:05,776 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:05,776 Target: arm-linux-gnueabihf 2021-07-15T22:03:05,777 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:05,777 Thread model: posix 2021-07-15T22:03:05,777 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:05,777 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:05,777 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:05,778 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemtoolformat.cpp -quiet -dumpbase chemtoolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccJC7qFm.s 2021-07-15T22:03:05,790 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:05,790 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:05,790 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:05,791 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:05,791 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:05,791 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:05,791 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:05,792 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:05,792 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:05,792 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:05,792 #include "..." search starts here: 2021-07-15T22:03:05,792 #include <...> search starts here: 2021-07-15T22:03:05,792 /usr/include/eigen3 2021-07-15T22:03:05,792 include 2021-07-15T22:03:05,793 /usr/include/python3.9 2021-07-15T22:03:05,793 /usr/include/c++/10 2021-07-15T22:03:05,793 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:05,793 /usr/include/c++/10/backward 2021-07-15T22:03:05,793 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:05,793 /usr/local/include 2021-07-15T22:03:05,793 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:05,793 /usr/include 2021-07-15T22:03:05,794 End of search list. 2021-07-15T22:03:05,794 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:05,794 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:05,794 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:05,809 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:07,432 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:07,432 from include/openbabel/mol.h:43, 2021-07-15T22:03:07,432 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:07,433 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:03:07,433 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:07,433 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:07,433 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:07,433 | ^ 2021-07-15T22:03:07,433 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:07,433 37 | # define UNUSED(x) x 2021-07-15T22:03:07,434 | ^ 2021-07-15T22:03:08,229 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:08,230 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:08,230 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:03:08,230 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:08,230 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:08,230 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:08,231 | ^ 2021-07-15T22:03:08,231 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:08,231 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:08,231 | ^~~~~~~~ 2021-07-15T22:03:08,236 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:08,236 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:08,236 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:08,236 | ^ 2021-07-15T22:03:08,237 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:08,237 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:08,237 | ^~~~~~~~ 2021-07-15T22:03:08,256 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:08,256 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:08,256 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:08,257 | ^ 2021-07-15T22:03:08,257 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:08,257 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:08,257 | ^~~~~~~~ 2021-07-15T22:03:08,263 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:08,263 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:08,263 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:03:08,264 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:08,264 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:08,264 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:08,264 | ^ 2021-07-15T22:03:08,264 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:08,265 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:08,265 | ^~~~~~~~ 2021-07-15T22:03:11,076 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:11,076 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o /tmp/ccJC7qFm.s 2021-07-15T22:03:11,082 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:11,318 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:11,318 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:11,318 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:11,320 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cifformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cifformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:11,329 Using built-in specs. 2021-07-15T22:03:11,331 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:11,331 Target: arm-linux-gnueabihf 2021-07-15T22:03:11,332 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:11,332 Thread model: posix 2021-07-15T22:03:11,332 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:11,333 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:11,334 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:11,337 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cifformat.cpp -quiet -dumpbase cifformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cifformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHndLfD.s 2021-07-15T22:03:11,349 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:11,349 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:11,350 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:11,350 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:11,350 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:11,350 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:11,351 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:11,351 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:11,351 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:11,352 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:11,352 #include "..." search starts here: 2021-07-15T22:03:11,352 #include <...> search starts here: 2021-07-15T22:03:11,353 /usr/include/eigen3 2021-07-15T22:03:11,353 include 2021-07-15T22:03:11,353 /usr/include/python3.9 2021-07-15T22:03:11,353 /usr/include/c++/10 2021-07-15T22:03:11,353 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:11,354 /usr/include/c++/10/backward 2021-07-15T22:03:11,354 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:11,354 /usr/local/include 2021-07-15T22:03:11,355 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:11,355 /usr/include 2021-07-15T22:03:11,355 End of search list. 2021-07-15T22:03:11,355 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:11,356 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:11,356 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:11,371 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:13,026 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:13,026 from include/openbabel/mol.h:43, 2021-07-15T22:03:13,026 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:13,027 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:03:13,027 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:13,027 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:13,028 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:13,028 | ^ 2021-07-15T22:03:13,028 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:13,029 37 | # define UNUSED(x) x 2021-07-15T22:03:13,029 | ^ 2021-07-15T22:03:13,810 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:13,810 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:13,811 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:03:13,811 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:13,811 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:13,812 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:13,812 | ^ 2021-07-15T22:03:13,812 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:13,813 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:13,813 | ^~~~~~~~ 2021-07-15T22:03:13,815 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:13,815 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:13,815 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:13,816 | ^ 2021-07-15T22:03:13,816 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:13,816 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:13,817 | ^~~~~~~~ 2021-07-15T22:03:13,834 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:13,834 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:13,834 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:13,835 | ^ 2021-07-15T22:03:13,835 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:13,835 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:13,836 | ^~~~~~~~ 2021-07-15T22:03:13,839 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:13,840 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:13,840 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:03:13,840 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:13,841 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:13,841 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:13,841 | ^ 2021-07-15T22:03:13,842 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:13,842 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:13,842 | ^~~~~~~~ 2021-07-15T22:03:14,594 ./src/formats/cifformat.cpp: In member function ‘void OpenBabel::CIFData::CalcMatrices()’: 2021-07-15T22:03:14,594 ./src/formats/cifformat.cpp:900:11: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:14,595 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:03:14,595 | ^~ 2021-07-15T22:03:14,595 ./src/formats/cifformat.cpp:900:14: warning: variable ‘bb’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:14,595 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:03:14,596 | ^~ 2021-07-15T22:03:14,596 ./src/formats/cifformat.cpp:900:27: warning: variable ‘betaa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:14,596 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:03:14,596 | ^~~~~ 2021-07-15T22:03:14,597 ./src/formats/cifformat.cpp:900:33: warning: variable ‘gammaa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:14,597 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:03:14,597 | ^~~~~~ 2021-07-15T22:03:33,171 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:33,171 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cifformat.o /tmp/ccHndLfD.s 2021-07-15T22:03:33,178 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:35,220 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:35,221 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:35,221 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:35,230 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/confabreport.cpp -o build/temp.linux-armv7l-3.9/./src/formats/confabreport.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:35,241 Using built-in specs. 2021-07-15T22:03:35,242 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:35,242 Target: arm-linux-gnueabihf 2021-07-15T22:03:35,243 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:35,243 Thread model: posix 2021-07-15T22:03:35,243 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:35,243 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:35,244 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:35,244 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/confabreport.cpp -quiet -dumpbase confabreport.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/confabreport.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccahRPdP.s 2021-07-15T22:03:35,262 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:35,262 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:35,263 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:35,264 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:35,264 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:35,264 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:35,265 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:35,265 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:35,265 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:35,265 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:35,265 #include "..." search starts here: 2021-07-15T22:03:35,266 #include <...> search starts here: 2021-07-15T22:03:35,266 /usr/include/eigen3 2021-07-15T22:03:35,266 include 2021-07-15T22:03:35,266 /usr/include/python3.9 2021-07-15T22:03:35,266 /usr/include/c++/10 2021-07-15T22:03:35,267 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:35,267 /usr/include/c++/10/backward 2021-07-15T22:03:35,267 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:35,267 /usr/local/include 2021-07-15T22:03:35,267 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:35,267 /usr/include 2021-07-15T22:03:35,268 End of search list. 2021-07-15T22:03:35,268 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:35,268 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:35,268 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:35,288 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:37,150 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:37,150 from include/openbabel/mol.h:43, 2021-07-15T22:03:37,151 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:37,151 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:37,151 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:37,151 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:37,152 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:37,152 | ^ 2021-07-15T22:03:37,152 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:37,152 37 | # define UNUSED(x) x 2021-07-15T22:03:37,152 | ^ 2021-07-15T22:03:37,947 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:37,948 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:37,948 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:37,948 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:37,948 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:37,948 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:37,949 | ^ 2021-07-15T22:03:37,949 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:37,949 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:37,949 | ^~~~~~~~ 2021-07-15T22:03:37,952 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:37,952 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:37,952 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:37,953 | ^ 2021-07-15T22:03:37,953 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:37,953 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:37,953 | ^~~~~~~~ 2021-07-15T22:03:37,971 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:37,971 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:37,971 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:37,972 | ^ 2021-07-15T22:03:37,972 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:37,972 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:37,972 | ^~~~~~~~ 2021-07-15T22:03:37,976 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:37,977 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:37,977 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:37,977 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:37,977 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:37,978 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:37,978 | ^ 2021-07-15T22:03:37,978 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:37,978 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:37,978 | ^~~~~~~~ 2021-07-15T22:03:39,456 ./src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: 2021-07-15T22:03:39,456 ./src/formats/confabreport.cpp:128:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:03:39,457 128 | for (int i=1; i < binvals.size(); i++) 2021-07-15T22:03:39,457 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:03:39,459 ./src/formats/confabreport.cpp:133:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:03:39,460 133 | for (int i=1; i < cumbins.size(); i++) 2021-07-15T22:03:39,460 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:03:41,553 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T22:03:41,554 from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:41,554 from include/openbabel/ring.h:24, 2021-07-15T22:03:41,554 from include/openbabel/mol.h:51, 2021-07-15T22:03:41,554 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:41,554 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:41,554 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:03:41,554 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,555 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T22:03:41,555 | ^~~~~~~~~~~~~ 2021-07-15T22:03:41,594 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:41,594 from include/openbabel/ring.h:24, 2021-07-15T22:03:41,594 from include/openbabel/mol.h:51, 2021-07-15T22:03:41,595 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:41,595 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:41,595 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:03:41,595 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,595 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:03:41,596 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:03:41,596 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,596 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,645 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:03:41,645 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,645 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:03:41,645 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:03:41,646 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,646 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:41,646 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:03:41,646 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,321 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: 2021-07-15T22:03:42,322 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:42,322 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:03:42,322 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,322 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:03:42,323 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,323 1976 | __comp); 2021-07-15T22:03:42,323 | ~~~~~~~ 2021-07-15T22:03:42,323 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:42,323 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:03:42,324 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,324 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:42,324 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:03:42,324 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,458 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:42,458 from include/openbabel/mol.h:35, 2021-07-15T22:03:42,458 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:42,458 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:03:42,459 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:03:42,459 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:42,459 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:42,459 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:42,568 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::ConfabReport::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:03:42,568 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:42,569 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:42,569 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:43,317 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:43,317 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/confabreport.o /tmp/ccahRPdP.s 2021-07-15T22:03:43,323 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:43,750 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:43,751 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:43,751 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:43,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/copyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/copyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:43,763 Using built-in specs. 2021-07-15T22:03:43,764 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:43,764 Target: arm-linux-gnueabihf 2021-07-15T22:03:43,764 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:43,764 Thread model: posix 2021-07-15T22:03:43,764 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:43,765 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:43,765 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:43,765 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/copyformat.cpp -quiet -dumpbase copyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/copyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cck5RYeh.s 2021-07-15T22:03:43,781 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:43,781 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:43,782 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:43,785 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:43,785 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:43,786 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:43,786 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:43,786 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:43,787 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:43,787 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:43,787 #include "..." search starts here: 2021-07-15T22:03:43,788 #include <...> search starts here: 2021-07-15T22:03:43,788 /usr/include/eigen3 2021-07-15T22:03:43,788 include 2021-07-15T22:03:43,789 /usr/include/python3.9 2021-07-15T22:03:43,790 /usr/include/c++/10 2021-07-15T22:03:43,791 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:43,792 /usr/include/c++/10/backward 2021-07-15T22:03:43,793 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:43,793 /usr/local/include 2021-07-15T22:03:43,794 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:43,795 /usr/include 2021-07-15T22:03:43,795 End of search list. 2021-07-15T22:03:43,796 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:43,796 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:43,798 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:43,816 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:46,173 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:46,173 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/copyformat.o /tmp/cck5RYeh.s 2021-07-15T22:03:46,179 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:46,262 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:46,262 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:46,262 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:46,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/crkformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/crkformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:46,272 Using built-in specs. 2021-07-15T22:03:46,273 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:46,273 Target: arm-linux-gnueabihf 2021-07-15T22:03:46,273 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:46,274 Thread model: posix 2021-07-15T22:03:46,274 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:46,274 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:46,275 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:46,278 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/crkformat.cpp -quiet -dumpbase crkformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/crkformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTKM6yt.s 2021-07-15T22:03:46,291 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:46,291 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:46,292 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:46,293 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:46,293 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:46,293 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:46,294 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:46,294 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:46,294 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:46,295 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:46,295 #include "..." search starts here: 2021-07-15T22:03:46,295 #include <...> search starts here: 2021-07-15T22:03:46,296 /usr/include/eigen3 2021-07-15T22:03:46,296 include 2021-07-15T22:03:46,296 /usr/include/python3.9 2021-07-15T22:03:46,296 /usr/include/c++/10 2021-07-15T22:03:46,296 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:46,296 /usr/include/c++/10/backward 2021-07-15T22:03:46,297 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:46,297 /usr/local/include 2021-07-15T22:03:46,297 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:46,297 /usr/include 2021-07-15T22:03:46,297 End of search list. 2021-07-15T22:03:46,298 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:46,298 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:46,298 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:46,314 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:47,932 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:47,933 from include/openbabel/mol.h:43, 2021-07-15T22:03:47,933 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:47,933 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:03:47,933 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:47,933 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:47,933 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:47,933 | ^ 2021-07-15T22:03:47,934 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:47,934 37 | # define UNUSED(x) x 2021-07-15T22:03:47,934 | ^ 2021-07-15T22:03:48,730 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:48,730 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:48,730 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:03:48,730 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:48,730 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:48,730 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:48,731 | ^ 2021-07-15T22:03:48,731 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:48,731 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:48,731 | ^~~~~~~~ 2021-07-15T22:03:48,736 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:48,736 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:48,736 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:48,736 | ^ 2021-07-15T22:03:48,737 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:48,737 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:48,737 | ^~~~~~~~ 2021-07-15T22:03:48,756 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:48,756 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:48,756 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:48,756 | ^ 2021-07-15T22:03:48,757 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:48,757 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:48,757 | ^~~~~~~~ 2021-07-15T22:03:48,763 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:48,763 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:48,763 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:03:48,763 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:48,763 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:48,764 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:48,764 | ^ 2021-07-15T22:03:48,764 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:48,764 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:48,764 | ^~~~~~~~ 2021-07-15T22:03:52,020 ./src/formats/crkformat.cpp: In static member function ‘static bool OpenBabel::CRK2DFormat::ReadCRK(std::istream&, OpenBabel::OBMol&, const char*)’: 2021-07-15T22:03:52,020 ./src/formats/crkformat.cpp:304:38: warning: ‘bondStyle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,020 304 | stbondStyle[numBonds]=bondStyle; 2021-07-15T22:03:52,020 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:03:52,021 ./src/formats/crkformat.cpp:302:35: warning: ‘bondTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,021 302 | stbondTo[numBonds]=bondTo; 2021-07-15T22:03:52,021 | ~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:03:52,022 ./src/formats/crkformat.cpp:301:37: warning: ‘bondFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,022 301 | stbondFrom[numBonds]=bondFrom; 2021-07-15T22:03:52,022 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:03:52,023 ./src/formats/crkformat.cpp:287:36: warning: ‘atomCharge’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,023 287 | atm.SetFormalCharge((int)atomCharge); 2021-07-15T22:03:52,023 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:03:52,024 ./src/formats/crkformat.cpp:286:30: warning: ‘atomZ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,024 286 | atm.SetVector(atomX,atomY,atomZ); 2021-07-15T22:03:52,024 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:52,025 ./src/formats/crkformat.cpp:286:30: warning: ‘atomY’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,025 ./src/formats/crkformat.cpp:286:30: warning: ‘atomX’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,026 In file included from include/openbabel/mol.h:43, 2021-07-15T22:03:52,027 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:52,027 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:03:52,027 include/openbabel/atom.h:144:52: warning: ‘atomNumber’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,027 144 | void SetAtomicNum(int atomicnum) { _ele = (char)atomicnum; } 2021-07-15T22:03:52,027 | ^~~~~~~~~~~~~~~ 2021-07-15T22:03:52,028 ./src/formats/crkformat.cpp:241:16: note: ‘atomNumber’ was declared here 2021-07-15T22:03:52,028 241 | int atomID,atomNumber; 2021-07-15T22:03:52,028 | ^~~~~~~~~~ 2021-07-15T22:03:52,028 ./src/formats/crkformat.cpp:283:37: warning: ‘atomID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:52,029 283 | statomID[numAtoms++]=atomID; 2021-07-15T22:03:52,029 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:03:53,002 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:53,002 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/crkformat.o /tmp/ccTKM6yt.s 2021-07-15T22:03:53,013 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:53,370 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:53,370 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:53,370 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:53,375 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/crystal09format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:53,382 Using built-in specs. 2021-07-15T22:03:53,383 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:53,383 Target: arm-linux-gnueabihf 2021-07-15T22:03:53,384 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:53,384 Thread model: posix 2021-07-15T22:03:53,384 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:53,384 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:53,385 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:53,388 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/crystal09format.cpp -quiet -dumpbase crystal09format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccyHaZ7G.s 2021-07-15T22:03:53,401 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:53,402 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:53,403 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:53,404 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:53,404 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:53,404 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:53,405 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:53,405 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:53,405 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:53,406 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:53,406 #include "..." search starts here: 2021-07-15T22:03:53,406 #include <...> search starts here: 2021-07-15T22:03:53,407 /usr/include/eigen3 2021-07-15T22:03:53,407 include 2021-07-15T22:03:53,407 /usr/include/python3.9 2021-07-15T22:03:53,407 /usr/include/c++/10 2021-07-15T22:03:53,408 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:53,408 /usr/include/c++/10/backward 2021-07-15T22:03:53,408 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:53,408 /usr/local/include 2021-07-15T22:03:53,408 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:53,409 /usr/include 2021-07-15T22:03:53,409 End of search list. 2021-07-15T22:03:53,415 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:53,415 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:53,416 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:53,425 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:55,098 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:55,098 from include/openbabel/mol.h:43, 2021-07-15T22:03:55,098 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:55,098 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:03:55,099 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:55,099 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:55,099 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:55,099 | ^ 2021-07-15T22:03:55,099 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:55,100 37 | # define UNUSED(x) x 2021-07-15T22:03:55,100 | ^ 2021-07-15T22:03:55,795 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:55,795 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:55,795 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:03:55,796 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:55,796 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:55,796 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:55,796 | ^ 2021-07-15T22:03:55,797 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:55,797 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:55,797 | ^~~~~~~~ 2021-07-15T22:03:55,798 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:55,798 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:55,799 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:55,799 | ^ 2021-07-15T22:03:55,799 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:55,799 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:55,800 | ^~~~~~~~ 2021-07-15T22:03:55,817 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:55,818 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:55,818 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:55,818 | ^ 2021-07-15T22:03:55,818 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:55,819 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:55,819 | ^~~~~~~~ 2021-07-15T22:03:55,823 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:55,823 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:03:55,823 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:03:55,824 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:55,824 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:55,824 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:55,824 | ^ 2021-07-15T22:03:55,825 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:55,825 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:55,825 | ^~~~~~~~ 2021-07-15T22:03:59,106 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:59,106 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:03:59,106 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:03:59,106 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:59,107 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:59,107 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:59,149 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:03:59,150 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:59,203 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:03:59,203 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:04:00,288 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:00,288 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:04:00,288 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::Crystal09Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:00,289 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,289 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:00,289 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:00,289 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,289 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:00,290 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:00,290 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:04:00,291 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:04:00,291 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,291 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,291 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,292 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,292 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,292 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,292 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,292 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,293 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,293 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,293 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,293 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,294 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,294 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,294 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,294 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,294 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,295 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,295 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,295 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,296 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,296 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:00,296 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:00,297 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:01,961 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:01,962 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o /tmp/ccyHaZ7G.s 2021-07-15T22:04:01,969 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:02,587 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:02,587 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:02,587 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:02,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cssrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:02,600 Using built-in specs. 2021-07-15T22:04:02,601 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:02,602 Target: arm-linux-gnueabihf 2021-07-15T22:04:02,602 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:02,602 Thread model: posix 2021-07-15T22:04:02,603 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:02,603 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:02,604 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:02,607 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cssrformat.cpp -quiet -dumpbase cssrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc6tuKYa.s 2021-07-15T22:04:02,620 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:02,620 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:02,621 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:02,622 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:02,622 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:02,623 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:02,623 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:02,623 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:02,624 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:02,624 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:02,624 #include "..." search starts here: 2021-07-15T22:04:02,624 #include <...> search starts here: 2021-07-15T22:04:02,625 /usr/include/eigen3 2021-07-15T22:04:02,625 include 2021-07-15T22:04:02,626 /usr/include/python3.9 2021-07-15T22:04:02,626 /usr/include/c++/10 2021-07-15T22:04:02,626 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:02,626 /usr/include/c++/10/backward 2021-07-15T22:04:02,627 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:02,627 /usr/local/include 2021-07-15T22:04:02,627 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:02,627 /usr/include 2021-07-15T22:04:02,627 End of search list. 2021-07-15T22:04:02,635 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:02,635 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:02,636 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:02,647 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:04,222 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:04,222 from include/openbabel/mol.h:43, 2021-07-15T22:04:04,222 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:04,222 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:04:04,222 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:04,222 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:04,223 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:04,223 | ^ 2021-07-15T22:04:04,223 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:04,223 37 | # define UNUSED(x) x 2021-07-15T22:04:04,223 | ^ 2021-07-15T22:04:05,012 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:05,012 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:05,013 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:04:05,013 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:05,013 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:05,013 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:05,013 | ^ 2021-07-15T22:04:05,014 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:05,014 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:05,014 | ^~~~~~~~ 2021-07-15T22:04:05,018 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:05,018 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:05,019 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:05,019 | ^ 2021-07-15T22:04:05,019 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:05,019 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:05,019 | ^~~~~~~~ 2021-07-15T22:04:05,038 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:05,039 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:05,039 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:05,039 | ^ 2021-07-15T22:04:05,039 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:05,039 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:05,040 | ^~~~~~~~ 2021-07-15T22:04:05,045 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:05,046 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:05,046 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:04:05,046 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:05,046 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:05,046 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:05,046 | ^ 2021-07-15T22:04:05,047 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:05,047 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:05,047 | ^~~~~~~~ 2021-07-15T22:04:07,878 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:07,879 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o /tmp/cc6tuKYa.s 2021-07-15T22:04:07,885 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:08,102 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:08,102 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:08,103 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:08,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/daltonformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:08,114 Using built-in specs. 2021-07-15T22:04:08,116 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:08,116 Target: arm-linux-gnueabihf 2021-07-15T22:04:08,117 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:08,117 Thread model: posix 2021-07-15T22:04:08,117 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:08,117 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:08,119 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:08,121 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/daltonformat.cpp -quiet -dumpbase daltonformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBkTQ2k.s 2021-07-15T22:04:08,133 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:08,134 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:08,134 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:08,136 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:08,136 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:08,136 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:08,137 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:08,137 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:08,137 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:08,138 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:08,138 #include "..." search starts here: 2021-07-15T22:04:08,138 #include <...> search starts here: 2021-07-15T22:04:08,138 /usr/include/eigen3 2021-07-15T22:04:08,138 include 2021-07-15T22:04:08,139 /usr/include/python3.9 2021-07-15T22:04:08,139 /usr/include/c++/10 2021-07-15T22:04:08,139 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:08,139 /usr/include/c++/10/backward 2021-07-15T22:04:08,140 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:08,140 /usr/local/include 2021-07-15T22:04:08,140 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:08,140 /usr/include 2021-07-15T22:04:08,140 End of search list. 2021-07-15T22:04:08,142 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:08,142 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:08,145 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:08,159 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:09,748 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:09,748 from include/openbabel/mol.h:43, 2021-07-15T22:04:09,748 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:09,749 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:04:09,749 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:09,750 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:09,750 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:09,750 | ^ 2021-07-15T22:04:09,751 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:09,751 37 | # define UNUSED(x) x 2021-07-15T22:04:09,752 | ^ 2021-07-15T22:04:10,545 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:10,545 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:10,545 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:04:10,546 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:10,546 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:10,546 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:10,546 | ^ 2021-07-15T22:04:10,547 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:10,547 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:10,547 | ^~~~~~~~ 2021-07-15T22:04:10,552 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:10,553 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:10,553 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:10,553 | ^ 2021-07-15T22:04:10,553 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:10,553 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:10,553 | ^~~~~~~~ 2021-07-15T22:04:10,568 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:10,569 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:10,569 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:10,569 | ^ 2021-07-15T22:04:10,569 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:10,570 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:10,570 | ^~~~~~~~ 2021-07-15T22:04:10,575 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:10,576 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:10,576 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:04:10,576 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:10,576 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:10,576 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:10,576 | ^ 2021-07-15T22:04:10,577 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:10,577 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:10,577 | ^~~~~~~~ 2021-07-15T22:04:10,923 ./src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:10,923 ./src/formats/daltonformat.cpp:142:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:04:10,924 142 | int atomcount = 0; // for each atom type 2021-07-15T22:04:10,924 | ^~~~~~~~~ 2021-07-15T22:04:10,933 ./src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:10,933 ./src/formats/daltonformat.cpp:306:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:10,933 306 | if(atom->GetAtomicNum() != atomtype) 2021-07-15T22:04:10,933 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:04:10,939 ./src/formats/daltonformat.cpp:326:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:10,939 326 | if(atom->GetAtomicNum() != atomtype) 2021-07-15T22:04:10,939 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:04:14,664 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:14,664 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o /tmp/ccBkTQ2k.s 2021-07-15T22:04:14,668 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:14,986 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:14,986 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:14,986 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:14,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/dlpolyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:14,998 Using built-in specs. 2021-07-15T22:04:14,999 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:14,999 Target: arm-linux-gnueabihf 2021-07-15T22:04:15,000 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:15,000 Thread model: posix 2021-07-15T22:04:15,000 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:15,001 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:15,002 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:15,004 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/dlpolyformat.cpp -quiet -dumpbase dlpolyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccecCX8A.s 2021-07-15T22:04:15,016 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:15,017 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:15,017 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:15,018 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:15,019 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:15,019 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:15,019 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:15,020 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:15,020 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:15,020 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:15,020 #include "..." search starts here: 2021-07-15T22:04:15,021 #include <...> search starts here: 2021-07-15T22:04:15,021 /usr/include/eigen3 2021-07-15T22:04:15,021 include 2021-07-15T22:04:15,021 /usr/include/python3.9 2021-07-15T22:04:15,021 /usr/include/c++/10 2021-07-15T22:04:15,022 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:15,022 /usr/include/c++/10/backward 2021-07-15T22:04:15,022 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:15,022 /usr/local/include 2021-07-15T22:04:15,023 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:15,023 /usr/include 2021-07-15T22:04:15,023 End of search list. 2021-07-15T22:04:15,024 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:15,035 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:15,035 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:15,040 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:16,643 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:16,644 from include/openbabel/mol.h:43, 2021-07-15T22:04:16,644 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:16,644 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:04:16,644 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:16,644 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:16,644 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:16,645 | ^ 2021-07-15T22:04:16,645 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:16,645 37 | # define UNUSED(x) x 2021-07-15T22:04:16,645 | ^ 2021-07-15T22:04:17,447 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:17,448 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:17,448 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:04:17,448 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:17,448 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:17,448 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:17,448 | ^ 2021-07-15T22:04:17,449 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:17,449 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:17,449 | ^~~~~~~~ 2021-07-15T22:04:17,453 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:17,454 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:17,454 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:17,454 | ^ 2021-07-15T22:04:17,454 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:17,455 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:17,455 | ^~~~~~~~ 2021-07-15T22:04:17,474 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:17,474 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:17,474 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:17,474 | ^ 2021-07-15T22:04:17,475 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:17,475 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:17,475 | ^~~~~~~~ 2021-07-15T22:04:17,480 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:17,481 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:17,481 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:04:17,481 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:17,481 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:17,481 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:17,481 | ^ 2021-07-15T22:04:17,482 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:17,482 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:17,482 | ^~~~~~~~ 2021-07-15T22:04:18,090 ./src/formats/dlpolyformat.cpp: In member function ‘bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:04:18,090 ./src/formats/dlpolyformat.cpp:147:10: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:04:18,091 147 | bool ok; 2021-07-15T22:04:18,091 | ^~ 2021-07-15T22:04:24,002 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:04:24,002 from include/openbabel/mol.h:35, 2021-07-15T22:04:24,002 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:24,002 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:04:24,002 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:04:24,002 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:04:24,003 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:04:24,003 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:24,320 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:04:24,320 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:24,320 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:04:24,321 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:27,252 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:27,253 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o /tmp/ccecCX8A.s 2021-07-15T22:04:27,258 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:28,456 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:28,457 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:28,457 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:28,464 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/dmolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:28,469 Using built-in specs. 2021-07-15T22:04:28,471 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:28,471 Target: arm-linux-gnueabihf 2021-07-15T22:04:28,472 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:28,472 Thread model: posix 2021-07-15T22:04:28,472 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:28,472 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:28,473 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:28,476 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/dmolformat.cpp -quiet -dumpbase dmolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccy5U3AR.s 2021-07-15T22:04:28,493 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:28,494 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:28,494 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:28,495 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:28,495 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:28,495 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:28,495 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:28,496 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:28,496 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:28,496 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:28,497 #include "..." search starts here: 2021-07-15T22:04:28,497 #include <...> search starts here: 2021-07-15T22:04:28,497 /usr/include/eigen3 2021-07-15T22:04:28,497 include 2021-07-15T22:04:28,498 /usr/include/python3.9 2021-07-15T22:04:28,498 /usr/include/c++/10 2021-07-15T22:04:28,498 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:28,498 /usr/include/c++/10/backward 2021-07-15T22:04:28,499 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:28,499 /usr/local/include 2021-07-15T22:04:28,499 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:28,499 /usr/include 2021-07-15T22:04:28,500 End of search list. 2021-07-15T22:04:28,500 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:28,500 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:28,500 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:28,517 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:30,463 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:30,464 from include/openbabel/mol.h:43, 2021-07-15T22:04:30,464 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:30,464 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:04:30,464 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:30,464 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:30,465 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:30,465 | ^ 2021-07-15T22:04:30,465 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:30,465 37 | # define UNUSED(x) x 2021-07-15T22:04:30,465 | ^ 2021-07-15T22:04:31,447 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:31,447 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:31,447 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:04:31,447 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:31,448 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:31,448 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:31,448 | ^ 2021-07-15T22:04:31,448 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:31,448 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:31,448 | ^~~~~~~~ 2021-07-15T22:04:31,452 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:31,452 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:31,452 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:31,452 | ^ 2021-07-15T22:04:31,452 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:31,452 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:31,453 | ^~~~~~~~ 2021-07-15T22:04:31,474 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:31,475 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:31,475 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:31,475 | ^ 2021-07-15T22:04:31,475 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:31,475 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:31,476 | ^~~~~~~~ 2021-07-15T22:04:31,481 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:31,481 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:31,481 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:04:31,481 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:31,481 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:31,482 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:31,482 | ^ 2021-07-15T22:04:31,482 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:31,482 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:31,482 | ^~~~~~~~ 2021-07-15T22:04:35,526 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:35,527 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o /tmp/ccy5U3AR.s 2021-07-15T22:04:35,534 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:35,794 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:35,794 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:35,795 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:35,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/exampleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:35,807 Using built-in specs. 2021-07-15T22:04:35,808 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:35,808 Target: arm-linux-gnueabihf 2021-07-15T22:04:35,808 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:35,809 Thread model: posix 2021-07-15T22:04:35,809 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:35,809 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:35,809 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:35,809 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/exampleformat.cpp -quiet -dumpbase exampleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqEmtcc.s 2021-07-15T22:04:35,822 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:35,823 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:35,823 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:35,824 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:35,824 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:35,824 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:35,824 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:35,825 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:35,825 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:35,825 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:35,826 #include "..." search starts here: 2021-07-15T22:04:35,826 #include <...> search starts here: 2021-07-15T22:04:35,826 /usr/include/eigen3 2021-07-15T22:04:35,826 include 2021-07-15T22:04:35,826 /usr/include/python3.9 2021-07-15T22:04:35,827 /usr/include/c++/10 2021-07-15T22:04:35,827 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:35,827 /usr/include/c++/10/backward 2021-07-15T22:04:35,828 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:35,828 /usr/local/include 2021-07-15T22:04:35,828 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:35,828 /usr/include 2021-07-15T22:04:35,828 End of search list. 2021-07-15T22:04:35,829 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:35,829 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:35,829 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:35,840 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:36,207 ./src/formats/exampleformat.cpp:178:2: warning: "/*" within comment [-Wcomment] 2021-07-15T22:04:36,207 178 | /* Return true if ok. Returning false means discard the OBMol and stop 2021-07-15T22:04:36,207 | 2021-07-15T22:04:37,431 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:37,431 from include/openbabel/mol.h:43, 2021-07-15T22:04:37,432 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:37,432 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:04:37,432 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:37,433 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:37,433 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:37,433 | ^ 2021-07-15T22:04:37,433 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:37,434 37 | # define UNUSED(x) x 2021-07-15T22:04:37,434 | ^ 2021-07-15T22:04:38,228 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:38,229 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:38,229 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:04:38,229 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:38,229 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:38,230 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:38,230 | ^ 2021-07-15T22:04:38,230 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:38,231 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:38,231 | ^~~~~~~~ 2021-07-15T22:04:38,233 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:38,233 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:38,233 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:38,234 | ^ 2021-07-15T22:04:38,234 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:38,234 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:38,235 | ^~~~~~~~ 2021-07-15T22:04:38,252 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:38,252 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:38,253 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:38,253 | ^ 2021-07-15T22:04:38,253 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:38,254 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:38,254 | ^~~~~~~~ 2021-07-15T22:04:38,258 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:38,258 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:38,259 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:04:38,259 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:38,259 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:38,259 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:38,260 | ^ 2021-07-15T22:04:38,260 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:38,260 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:38,261 | ^~~~~~~~ 2021-07-15T22:04:38,589 ./src/formats/exampleformat.cpp: In member function ‘virtual int OpenBabel::XXXFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:04:38,590 ./src/formats/exampleformat.cpp:128:30: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:04:38,590 128 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:04:38,590 | ~~~~^ 2021-07-15T22:04:38,591 ./src/formats/exampleformat.cpp:128:47: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:04:38,591 128 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:04:38,591 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:04:38,592 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:38,592 ./src/formats/exampleformat.cpp:156:12: warning: unused variable ‘ifs’ [-Wunused-variable] 2021-07-15T22:04:38,592 156 | istream& ifs = *pConv->GetInStream(); 2021-07-15T22:04:38,593 | ^~~ 2021-07-15T22:04:38,596 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:38,597 ./src/formats/exampleformat.cpp:203:6: warning: variable ‘levels’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:04:38,597 203 | int levels=0; 2021-07-15T22:04:38,598 | ^~~~~~ 2021-07-15T22:04:40,187 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:40,187 ./src/formats/exampleformat.cpp:171:20: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:40,187 171 | pmol->SetDimension(dim); 2021-07-15T22:04:40,188 | ~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:04:41,024 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:41,024 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o /tmp/ccqEmtcc.s 2021-07-15T22:04:41,029 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:41,238 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:41,238 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:41,238 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:41,240 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/exyzformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:41,248 Using built-in specs. 2021-07-15T22:04:41,249 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:41,249 Target: arm-linux-gnueabihf 2021-07-15T22:04:41,250 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:41,250 Thread model: posix 2021-07-15T22:04:41,250 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:41,250 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:41,250 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:41,251 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/exyzformat.cpp -quiet -dumpbase exyzformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8sEahq.s 2021-07-15T22:04:41,262 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:41,262 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:41,262 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:41,262 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:41,263 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:41,263 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:41,263 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:41,263 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:41,263 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:41,264 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:41,264 #include "..." search starts here: 2021-07-15T22:04:41,264 #include <...> search starts here: 2021-07-15T22:04:41,264 /usr/include/eigen3 2021-07-15T22:04:41,264 include 2021-07-15T22:04:41,264 /usr/include/python3.9 2021-07-15T22:04:41,264 /usr/include/c++/10 2021-07-15T22:04:41,265 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:41,265 /usr/include/c++/10/backward 2021-07-15T22:04:41,265 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:41,265 /usr/local/include 2021-07-15T22:04:41,265 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:41,266 /usr/include 2021-07-15T22:04:41,266 End of search list. 2021-07-15T22:04:41,266 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:41,266 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:41,267 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:41,279 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:42,876 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:42,877 from include/openbabel/mol.h:43, 2021-07-15T22:04:42,877 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:42,877 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:04:42,877 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:42,878 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:42,878 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:42,878 | ^ 2021-07-15T22:04:42,878 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:42,878 37 | # define UNUSED(x) x 2021-07-15T22:04:42,879 | ^ 2021-07-15T22:04:43,670 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:43,670 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:43,671 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:04:43,671 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:43,671 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:43,671 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:43,671 | ^ 2021-07-15T22:04:43,672 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:43,672 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:43,672 | ^~~~~~~~ 2021-07-15T22:04:43,675 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:43,675 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:43,675 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:43,675 | ^ 2021-07-15T22:04:43,676 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:43,676 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:43,676 | ^~~~~~~~ 2021-07-15T22:04:43,694 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:43,694 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:43,694 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:43,694 | ^ 2021-07-15T22:04:43,695 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:43,695 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:43,695 | ^~~~~~~~ 2021-07-15T22:04:43,699 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:43,700 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:43,700 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:04:43,700 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:43,700 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:43,700 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:43,701 | ^ 2021-07-15T22:04:43,701 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:43,701 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:43,701 | ^~~~~~~~ 2021-07-15T22:04:44,213 ./src/formats/exyzformat.cpp: In member function ‘virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:04:44,213 ./src/formats/exyzformat.cpp:133:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:04:44,214 133 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:04:44,214 | ~^ ~~~~~~~ 2021-07-15T22:04:44,214 | | | 2021-07-15T22:04:44,214 | | unsigned int* 2021-07-15T22:04:44,214 | int* 2021-07-15T22:04:44,215 | %d 2021-07-15T22:04:44,302 ./src/formats/exyzformat.cpp:118:19: warning: variable ‘virtualAtoms’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:04:44,302 118 | bool unitCell,virtualAtoms; 2021-07-15T22:04:44,303 | ^~~~~~~~~~~~ 2021-07-15T22:04:50,420 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:50,421 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o /tmp/cc8sEahq.s 2021-07-15T22:04:50,427 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:51,030 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:51,030 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:51,030 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:51,032 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fastaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:51,041 Using built-in specs. 2021-07-15T22:04:51,042 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:51,042 Target: arm-linux-gnueabihf 2021-07-15T22:04:51,043 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:51,043 Thread model: posix 2021-07-15T22:04:51,043 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:51,043 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:51,043 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:51,044 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fastaformat.cpp -quiet -dumpbase fastaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc0KKXWE.s 2021-07-15T22:04:51,058 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:51,058 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:51,059 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:51,059 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:51,059 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:51,060 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:51,060 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:51,060 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:51,060 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:51,061 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:51,061 #include "..." search starts here: 2021-07-15T22:04:51,061 #include <...> search starts here: 2021-07-15T22:04:51,062 /usr/include/eigen3 2021-07-15T22:04:51,062 include 2021-07-15T22:04:51,062 /usr/include/python3.9 2021-07-15T22:04:51,062 /usr/include/c++/10 2021-07-15T22:04:51,062 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:51,063 /usr/include/c++/10/backward 2021-07-15T22:04:51,063 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:51,063 /usr/local/include 2021-07-15T22:04:51,063 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:51,063 /usr/include 2021-07-15T22:04:51,064 End of search list. 2021-07-15T22:04:51,064 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:51,064 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:51,065 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:51,080 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:53,072 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:53,072 from include/openbabel/mol.h:43, 2021-07-15T22:04:53,072 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:53,072 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:04:53,073 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:53,073 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:53,073 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:53,074 | ^ 2021-07-15T22:04:53,074 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:53,074 37 | # define UNUSED(x) x 2021-07-15T22:04:53,074 | ^ 2021-07-15T22:04:54,028 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:54,029 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:54,029 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:04:54,029 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:54,030 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:54,030 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:54,030 | ^ 2021-07-15T22:04:54,031 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:54,031 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:54,031 | ^~~~~~~~ 2021-07-15T22:04:54,034 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:54,034 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:54,035 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:54,035 | ^ 2021-07-15T22:04:54,035 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:54,035 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:54,036 | ^~~~~~~~ 2021-07-15T22:04:54,058 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:54,058 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:54,058 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:54,059 | ^ 2021-07-15T22:04:54,059 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:54,059 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:54,059 | ^~~~~~~~ 2021-07-15T22:04:54,065 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:54,065 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:04:54,065 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:04:54,065 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:54,066 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:54,066 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:54,066 | ^ 2021-07-15T22:04:54,067 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:54,067 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:54,067 | ^~~~~~~~ 2021-07-15T22:04:54,583 ./src/formats/fastaformat.cpp: In function ‘void OpenBabel::add_residue(OpenBabel::OBMol*, OpenBabel::OBResidue*, double, double, long unsigned int&, OpenBabel::ResidueRecord*, int, OpenBabel::OBAtom*&, bool, bool)’: 2021-07-15T22:04:54,584 ./src/formats/fastaformat.cpp:387:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:04:54,584 387 | else if (atom_count > resBondFromOffset) 2021-07-15T22:04:54,584 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:59,474 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:59,475 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o /tmp/cc0KKXWE.s 2021-07-15T22:04:59,481 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:59,863 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:59,864 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:59,864 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:59,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fastsearchformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:59,875 Using built-in specs. 2021-07-15T22:04:59,876 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:59,877 Target: arm-linux-gnueabihf 2021-07-15T22:04:59,877 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:59,877 Thread model: posix 2021-07-15T22:04:59,877 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:59,877 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:59,878 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:59,878 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fastsearchformat.cpp -quiet -dumpbase fastsearchformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccxKzJlZ.s 2021-07-15T22:04:59,891 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:59,892 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:59,892 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:59,892 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:59,892 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:59,893 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:59,893 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:59,893 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:59,893 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:59,893 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:59,893 #include "..." search starts here: 2021-07-15T22:04:59,894 #include <...> search starts here: 2021-07-15T22:04:59,894 /usr/include/eigen3 2021-07-15T22:04:59,894 include 2021-07-15T22:04:59,894 /usr/include/python3.9 2021-07-15T22:04:59,894 /usr/include/c++/10 2021-07-15T22:04:59,894 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:59,895 /usr/include/c++/10/backward 2021-07-15T22:04:59,895 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:59,895 /usr/local/include 2021-07-15T22:04:59,895 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:59,895 /usr/include 2021-07-15T22:04:59,896 End of search list. 2021-07-15T22:04:59,896 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:59,896 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:59,896 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:59,914 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:01,801 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:01,801 from include/openbabel/mol.h:43, 2021-07-15T22:05:01,802 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:05:01,802 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:01,802 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:01,802 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:01,802 | ^ 2021-07-15T22:05:01,803 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:01,803 37 | # define UNUSED(x) x 2021-07-15T22:05:01,803 | ^ 2021-07-15T22:05:02,868 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:02,868 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:05:02,868 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:02,869 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:02,869 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:02,869 | ^ 2021-07-15T22:05:02,869 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:02,870 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:02,870 | ^~~~~~~~ 2021-07-15T22:05:02,873 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:02,873 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:02,874 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:02,874 | ^ 2021-07-15T22:05:02,874 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:02,874 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:02,875 | ^~~~~~~~ 2021-07-15T22:05:02,896 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:02,897 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:02,897 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:02,897 | ^ 2021-07-15T22:05:02,897 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:02,898 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:02,898 | ^~~~~~~~ 2021-07-15T22:05:02,903 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:02,904 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:05:02,904 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:02,904 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:02,904 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:02,904 | ^ 2021-07-15T22:05:02,905 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:02,905 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:02,905 | ^~~~~~~~ 2021-07-15T22:05:03,485 ./src/formats/fastsearchformat.cpp: In member function ‘void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)’: 2021-07-15T22:05:03,485 ./src/formats/fastsearchformat.cpp:652:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:05:03,486 652 | if(idx>=patternMol.NumBonds()) 2021-07-15T22:05:03,486 | ~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:09,059 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:09,059 from include/openbabel/mol.h:35, 2021-07-15T22:05:09,059 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:05:09,059 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2021-07-15T22:05:09,059 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:09,059 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:09,060 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:09,304 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:09,304 from include/openbabel/mol.h:35, 2021-07-15T22:05:09,305 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:05:09,305 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)’: 2021-07-15T22:05:09,305 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:09,305 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:09,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:09,306 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:09,306 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:09,306 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:09,590 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::FastSearchFormat::ObtainTarget(OpenBabel::OBConversion*, std::vector&, const string&)’: 2021-07-15T22:05:09,591 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:09,591 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:09,591 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:09,591 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:09,592 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:09,592 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:09,594 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:09,595 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:09,595 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:10,909 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::FastSearchFormat::ReadChemObject(OpenBabel::OBConversion*)’: 2021-07-15T22:05:10,910 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:10,910 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:10,910 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:13,092 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:13,092 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o /tmp/ccxKzJlZ.s 2021-07-15T22:05:13,099 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:14,019 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:14,020 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:14,020 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:14,023 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fchkformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:14,032 Using built-in specs. 2021-07-15T22:05:14,033 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:14,033 Target: arm-linux-gnueabihf 2021-07-15T22:05:14,033 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:14,033 Thread model: posix 2021-07-15T22:05:14,034 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:14,034 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:14,034 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:14,034 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fchkformat.cpp -quiet -dumpbase fchkformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchnz73n.s 2021-07-15T22:05:14,047 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:14,048 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:14,048 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:14,048 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:14,049 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:14,049 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:14,049 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:14,049 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:14,049 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:14,049 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:14,050 #include "..." search starts here: 2021-07-15T22:05:14,050 #include <...> search starts here: 2021-07-15T22:05:14,050 /usr/include/eigen3 2021-07-15T22:05:14,050 include 2021-07-15T22:05:14,050 /usr/include/python3.9 2021-07-15T22:05:14,051 /usr/include/c++/10 2021-07-15T22:05:14,051 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:14,051 /usr/include/c++/10/backward 2021-07-15T22:05:14,051 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:14,051 /usr/local/include 2021-07-15T22:05:14,051 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:14,051 /usr/include 2021-07-15T22:05:14,052 End of search list. 2021-07-15T22:05:14,052 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:14,052 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:14,052 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:14,070 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:16,094 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:16,094 from include/openbabel/mol.h:43, 2021-07-15T22:05:16,095 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:05:16,095 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:16,095 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:16,095 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:16,096 | ^ 2021-07-15T22:05:16,096 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:16,096 37 | # define UNUSED(x) x 2021-07-15T22:05:16,096 | ^ 2021-07-15T22:05:17,085 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:17,085 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:05:17,085 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:17,086 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:17,086 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:17,086 | ^ 2021-07-15T22:05:17,086 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:17,086 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:17,087 | ^~~~~~~~ 2021-07-15T22:05:17,095 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:17,095 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:17,095 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:17,096 | ^ 2021-07-15T22:05:17,096 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:17,096 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:17,096 | ^~~~~~~~ 2021-07-15T22:05:17,114 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:17,115 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:17,115 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:17,115 | ^ 2021-07-15T22:05:17,115 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:17,116 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:17,116 | ^~~~~~~~ 2021-07-15T22:05:17,120 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:17,121 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:05:17,121 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:17,121 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:17,121 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:17,121 | ^ 2021-07-15T22:05:17,122 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:17,122 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:17,122 | ^~~~~~~~ 2021-07-15T22:05:17,498 ./src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:05:17,498 ./src/formats/fchkformat.cpp:587:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:17,498 587 | if (alphaorb_found && (numAOrb > alphaorb.size())) 2021-07-15T22:05:17,498 | ~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:05:17,499 ./src/formats/fchkformat.cpp:600:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:17,499 600 | if (betaorb_found && (numBOrb > betaorb.size())) 2021-07-15T22:05:17,499 | ~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-15T22:05:17,514 ./src/formats/fchkformat.cpp:691:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:05:17,515 691 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { 2021-07-15T22:05:17,515 | ~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:05:17,520 ./src/formats/fchkformat.cpp:695:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:05:17,520 695 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation 2021-07-15T22:05:17,520 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:05:21,469 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:21,470 from include/openbabel/mol.h:35, 2021-07-15T22:05:21,470 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:05:21,470 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:05:21,470 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:21,470 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:21,470 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,578 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:21,578 from include/openbabel/mol.h:35, 2021-07-15T22:05:21,579 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:05:21,579 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]’: 2021-07-15T22:05:21,579 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,579 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:21,579 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:21,582 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,582 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:21,582 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:23,710 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:05:23,710 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:23,711 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:23,711 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:26,428 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:26,429 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o /tmp/cchnz73n.s 2021-07-15T22:05:26,434 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:27,270 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:27,271 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:27,271 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:27,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/featformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/featformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:27,285 Using built-in specs. 2021-07-15T22:05:27,286 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:27,287 Target: arm-linux-gnueabihf 2021-07-15T22:05:27,287 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:27,287 Thread model: posix 2021-07-15T22:05:27,288 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:27,288 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:27,289 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:27,292 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/featformat.cpp -quiet -dumpbase featformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/featformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccPYhylD.s 2021-07-15T22:05:27,304 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:27,304 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:27,304 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:27,305 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:27,305 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:27,305 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:27,305 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:27,305 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:27,305 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:27,306 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:27,306 #include "..." search starts here: 2021-07-15T22:05:27,306 #include <...> search starts here: 2021-07-15T22:05:27,306 /usr/include/eigen3 2021-07-15T22:05:27,306 include 2021-07-15T22:05:27,306 /usr/include/python3.9 2021-07-15T22:05:27,307 /usr/include/c++/10 2021-07-15T22:05:27,307 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:27,307 /usr/include/c++/10/backward 2021-07-15T22:05:27,307 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:27,307 /usr/local/include 2021-07-15T22:05:27,307 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:27,308 /usr/include 2021-07-15T22:05:27,308 End of search list. 2021-07-15T22:05:27,308 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:27,308 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:27,309 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:27,321 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:28,911 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:28,912 from include/openbabel/mol.h:43, 2021-07-15T22:05:28,912 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:28,912 from ./src/formats/featformat.cpp:17: 2021-07-15T22:05:28,912 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:28,913 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:28,913 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:28,913 | ^ 2021-07-15T22:05:28,913 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:28,913 37 | # define UNUSED(x) x 2021-07-15T22:05:28,914 | ^ 2021-07-15T22:05:29,713 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:29,714 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:29,714 from ./src/formats/featformat.cpp:17: 2021-07-15T22:05:29,714 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,714 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,715 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:29,715 | ^ 2021-07-15T22:05:29,715 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:29,715 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:29,716 | ^~~~~~~~ 2021-07-15T22:05:29,718 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,718 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,718 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:29,719 | ^ 2021-07-15T22:05:29,719 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:29,719 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:29,719 | ^~~~~~~~ 2021-07-15T22:05:29,737 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,737 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,738 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:29,738 | ^ 2021-07-15T22:05:29,738 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:29,738 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:29,738 | ^~~~~~~~ 2021-07-15T22:05:29,743 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:29,743 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:29,743 from ./src/formats/featformat.cpp:17: 2021-07-15T22:05:29,743 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,744 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,744 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:29,744 | ^ 2021-07-15T22:05:29,744 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:29,745 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:29,745 | ^~~~~~~~ 2021-07-15T22:05:32,572 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:32,573 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/featformat.o /tmp/ccPYhylD.s 2021-07-15T22:05:32,577 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:32,776 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:32,777 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:32,777 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:32,778 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fhformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fhformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:32,788 Using built-in specs. 2021-07-15T22:05:32,790 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:32,790 Target: arm-linux-gnueabihf 2021-07-15T22:05:32,790 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:32,790 Thread model: posix 2021-07-15T22:05:32,791 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:32,791 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:32,791 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:32,791 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fhformat.cpp -quiet -dumpbase fhformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fhformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccaiRGjT.s 2021-07-15T22:05:32,805 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:32,805 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:32,806 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:32,806 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:32,806 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:32,807 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:32,807 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:32,807 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:32,807 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:32,807 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:32,808 #include "..." search starts here: 2021-07-15T22:05:32,808 #include <...> search starts here: 2021-07-15T22:05:32,808 /usr/include/eigen3 2021-07-15T22:05:32,808 include 2021-07-15T22:05:32,808 /usr/include/python3.9 2021-07-15T22:05:32,808 /usr/include/c++/10 2021-07-15T22:05:32,809 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:32,809 /usr/include/c++/10/backward 2021-07-15T22:05:32,809 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:32,809 /usr/local/include 2021-07-15T22:05:32,809 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:32,809 /usr/include 2021-07-15T22:05:32,810 End of search list. 2021-07-15T22:05:32,810 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:32,810 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:32,810 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:32,827 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:34,754 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:34,754 from include/openbabel/mol.h:43, 2021-07-15T22:05:34,754 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:34,755 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:05:34,755 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:34,755 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:34,755 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:34,756 | ^ 2021-07-15T22:05:34,756 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:34,756 37 | # define UNUSED(x) x 2021-07-15T22:05:34,756 | ^ 2021-07-15T22:05:35,737 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:35,737 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:35,737 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:05:35,738 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:35,738 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:35,738 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:35,738 | ^ 2021-07-15T22:05:35,739 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:35,739 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:35,739 | ^~~~~~~~ 2021-07-15T22:05:35,743 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:35,743 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:35,743 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:35,743 | ^ 2021-07-15T22:05:35,744 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:35,744 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:35,744 | ^~~~~~~~ 2021-07-15T22:05:35,766 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:35,766 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:35,767 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:35,767 | ^ 2021-07-15T22:05:35,767 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:35,767 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:35,767 | ^~~~~~~~ 2021-07-15T22:05:35,773 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:35,773 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:35,774 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:05:35,774 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:35,774 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:35,774 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:35,774 | ^ 2021-07-15T22:05:35,775 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:35,775 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:35,775 | ^~~~~~~~ 2021-07-15T22:05:39,258 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:39,259 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fhformat.o /tmp/ccaiRGjT.s 2021-07-15T22:05:39,267 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:39,507 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:39,507 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:39,507 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:39,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fhiaimsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:39,518 Using built-in specs. 2021-07-15T22:05:39,520 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:39,520 Target: arm-linux-gnueabihf 2021-07-15T22:05:39,520 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:39,520 Thread model: posix 2021-07-15T22:05:39,521 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:39,521 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:39,522 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:39,525 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fhiaimsformat.cpp -quiet -dumpbase fhiaimsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccDaOG54.s 2021-07-15T22:05:39,541 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:39,541 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:39,541 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:39,542 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:39,543 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:39,543 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:39,543 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:39,543 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:39,543 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:39,544 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:39,544 #include "..." search starts here: 2021-07-15T22:05:39,544 #include <...> search starts here: 2021-07-15T22:05:39,544 /usr/include/eigen3 2021-07-15T22:05:39,544 include 2021-07-15T22:05:39,545 /usr/include/python3.9 2021-07-15T22:05:39,545 /usr/include/c++/10 2021-07-15T22:05:39,545 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:39,545 /usr/include/c++/10/backward 2021-07-15T22:05:39,545 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:39,545 /usr/local/include 2021-07-15T22:05:39,546 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:39,546 /usr/include 2021-07-15T22:05:39,546 End of search list. 2021-07-15T22:05:39,546 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:39,546 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:39,547 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:39,564 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:41,500 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:41,500 from include/openbabel/mol.h:43, 2021-07-15T22:05:41,501 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:41,501 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:05:41,501 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:41,501 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:41,501 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:41,502 | ^ 2021-07-15T22:05:41,502 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:41,502 37 | # define UNUSED(x) x 2021-07-15T22:05:41,502 | ^ 2021-07-15T22:05:42,482 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:42,482 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:42,482 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:05:42,483 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:42,483 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:42,483 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:42,483 | ^ 2021-07-15T22:05:42,483 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:42,484 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:42,484 | ^~~~~~~~ 2021-07-15T22:05:42,487 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:42,488 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:42,488 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:42,488 | ^ 2021-07-15T22:05:42,488 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:42,489 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:42,489 | ^~~~~~~~ 2021-07-15T22:05:42,511 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:42,511 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:42,511 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:42,512 | ^ 2021-07-15T22:05:42,512 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:42,512 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:42,512 | ^~~~~~~~ 2021-07-15T22:05:42,517 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:42,518 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:42,518 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:05:42,518 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:42,518 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:42,518 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:42,518 | ^ 2021-07-15T22:05:42,519 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:42,519 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:42,519 | ^~~~~~~~ 2021-07-15T22:05:45,967 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:45,967 from include/openbabel/mol.h:35, 2021-07-15T22:05:45,967 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:45,967 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:05:45,967 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:05:45,968 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:45,968 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:45,968 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:46,115 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::FHIaimsFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:05:46,115 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:46,115 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:46,115 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:46,513 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:46,513 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o /tmp/ccDaOG54.s 2021-07-15T22:05:46,519 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:46,817 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:46,818 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:46,818 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:46,819 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fingerprintformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:46,828 Using built-in specs. 2021-07-15T22:05:46,829 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:46,829 Target: arm-linux-gnueabihf 2021-07-15T22:05:46,829 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:46,829 Thread model: posix 2021-07-15T22:05:46,829 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:46,829 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:46,830 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:46,830 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fingerprintformat.cpp -quiet -dumpbase fingerprintformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccbU8W3h.s 2021-07-15T22:05:46,841 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:46,842 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:46,842 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:46,843 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:46,843 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:46,843 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:46,844 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:46,844 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:46,844 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:46,844 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:46,845 #include "..." search starts here: 2021-07-15T22:05:46,845 #include <...> search starts here: 2021-07-15T22:05:46,845 /usr/include/eigen3 2021-07-15T22:05:46,846 include 2021-07-15T22:05:46,846 /usr/include/python3.9 2021-07-15T22:05:46,846 /usr/include/c++/10 2021-07-15T22:05:46,846 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:46,847 /usr/include/c++/10/backward 2021-07-15T22:05:46,847 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:46,847 /usr/local/include 2021-07-15T22:05:46,847 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:46,848 /usr/include 2021-07-15T22:05:46,848 End of search list. 2021-07-15T22:05:46,848 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:46,848 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:46,849 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:46,861 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:48,584 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:48,584 from include/openbabel/mol.h:43, 2021-07-15T22:05:48,585 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:48,585 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:05:48,585 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:48,585 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:48,586 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:48,586 | ^ 2021-07-15T22:05:48,586 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:48,586 37 | # define UNUSED(x) x 2021-07-15T22:05:48,587 | ^ 2021-07-15T22:05:49,384 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:49,385 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:49,385 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:05:49,385 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:49,386 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:49,386 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:49,386 | ^ 2021-07-15T22:05:49,387 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:49,387 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:49,387 | ^~~~~~~~ 2021-07-15T22:05:49,389 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:49,390 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:49,390 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:49,390 | ^ 2021-07-15T22:05:49,390 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:49,391 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:49,391 | ^~~~~~~~ 2021-07-15T22:05:49,408 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:49,409 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:49,409 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:49,409 | ^ 2021-07-15T22:05:49,410 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:49,410 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:49,410 | ^~~~~~~~ 2021-07-15T22:05:49,414 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:49,414 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:49,415 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:05:49,415 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:49,415 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:49,416 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:49,416 | ^ 2021-07-15T22:05:49,416 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:49,417 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:49,417 | ^~~~~~~~ 2021-07-15T22:05:53,422 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:53,422 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o /tmp/ccbU8W3h.s 2021-07-15T22:05:53,431 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:53,902 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:53,902 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:53,902 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:53,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fpsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:53,913 Using built-in specs. 2021-07-15T22:05:53,914 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:53,915 Target: arm-linux-gnueabihf 2021-07-15T22:05:53,915 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:53,915 Thread model: posix 2021-07-15T22:05:53,915 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:53,916 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:53,916 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:53,916 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fpsformat.cpp -quiet -dumpbase fpsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8Podbw.s 2021-07-15T22:05:53,932 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:53,933 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:53,934 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:53,935 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:53,936 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:53,936 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:53,937 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:53,937 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:53,938 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:53,938 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:53,938 #include "..." search starts here: 2021-07-15T22:05:53,938 #include <...> search starts here: 2021-07-15T22:05:53,939 /usr/include/eigen3 2021-07-15T22:05:53,939 include 2021-07-15T22:05:53,939 /usr/include/python3.9 2021-07-15T22:05:53,939 /usr/include/c++/10 2021-07-15T22:05:53,939 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:53,940 /usr/include/c++/10/backward 2021-07-15T22:05:53,940 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:53,940 /usr/local/include 2021-07-15T22:05:53,940 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:53,940 /usr/include 2021-07-15T22:05:53,941 End of search list. 2021-07-15T22:05:53,942 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:53,943 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:53,943 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:53,964 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:55,837 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:55,838 from include/openbabel/mol.h:43, 2021-07-15T22:05:55,838 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:55,839 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:05:55,839 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:55,839 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:55,840 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:55,840 | ^ 2021-07-15T22:05:55,841 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:55,841 37 | # define UNUSED(x) x 2021-07-15T22:05:55,841 | ^ 2021-07-15T22:05:56,631 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:56,631 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:56,632 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:05:56,632 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:56,632 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:56,632 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:56,632 | ^ 2021-07-15T22:05:56,633 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:56,633 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:56,633 | ^~~~~~~~ 2021-07-15T22:05:56,637 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:56,638 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:56,638 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:56,638 | ^ 2021-07-15T22:05:56,638 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:56,638 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:56,639 | ^~~~~~~~ 2021-07-15T22:05:56,658 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:56,658 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:56,658 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:56,658 | ^ 2021-07-15T22:05:56,658 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:56,659 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:56,659 | ^~~~~~~~ 2021-07-15T22:05:56,664 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:56,665 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:05:56,665 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:05:56,665 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:56,665 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:56,665 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:56,665 | ^ 2021-07-15T22:05:56,666 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:56,666 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:56,666 | ^~~~~~~~ 2021-07-15T22:05:57,029 ./src/formats/fpsformat.cpp: In member function ‘virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:05:57,029 ./src/formats/fpsformat.cpp:146:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:05:57,029 146 | for(unsigned i=0;i<(_nbits+31)/32;++i) 2021-07-15T22:05:57,029 | ~^~~~~~~~~~~~~~~ 2021-07-15T22:05:57,038 ./src/formats/fpsformat.cpp: In member function ‘std::string OpenBabel::FPSFormat::getTimeStr()’: 2021-07-15T22:05:57,039 ./src/formats/fpsformat.cpp:169:10: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:05:57,039 169 | size_t time_res; /* Result of strftime */ 2021-07-15T22:05:57,039 | ^~~~~~~~ 2021-07-15T22:06:00,519 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:00,519 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o /tmp/cc8Podbw.s 2021-07-15T22:06:00,524 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:00,837 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:00,837 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:00,837 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:00,842 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/freefracformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:00,848 Using built-in specs. 2021-07-15T22:06:00,849 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:00,849 Target: arm-linux-gnueabihf 2021-07-15T22:06:00,849 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:00,850 Thread model: posix 2021-07-15T22:06:00,850 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:00,850 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:00,851 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:00,851 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/freefracformat.cpp -quiet -dumpbase freefracformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccVNM44V.s 2021-07-15T22:06:00,863 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:00,863 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:00,863 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:00,863 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:00,863 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:00,864 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:00,864 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:00,864 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:00,864 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:00,865 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:00,865 #include "..." search starts here: 2021-07-15T22:06:00,865 #include <...> search starts here: 2021-07-15T22:06:00,865 /usr/include/eigen3 2021-07-15T22:06:00,865 include 2021-07-15T22:06:00,865 /usr/include/python3.9 2021-07-15T22:06:00,866 /usr/include/c++/10 2021-07-15T22:06:00,866 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:00,866 /usr/include/c++/10/backward 2021-07-15T22:06:00,866 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:00,867 /usr/local/include 2021-07-15T22:06:00,867 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:00,867 /usr/include 2021-07-15T22:06:00,867 End of search list. 2021-07-15T22:06:00,868 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:00,868 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:00,868 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:00,880 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:02,567 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:02,567 from include/openbabel/mol.h:43, 2021-07-15T22:06:02,567 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:02,568 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:06:02,568 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:02,568 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:02,569 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:02,569 | ^ 2021-07-15T22:06:02,569 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:02,570 37 | # define UNUSED(x) x 2021-07-15T22:06:02,570 | ^ 2021-07-15T22:06:03,359 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:03,359 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:03,360 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:06:03,360 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:03,360 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:03,361 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:03,361 | ^ 2021-07-15T22:06:03,361 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:03,362 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:03,362 | ^~~~~~~~ 2021-07-15T22:06:03,364 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:03,364 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:03,364 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:03,365 | ^ 2021-07-15T22:06:03,365 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:03,365 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:03,365 | ^~~~~~~~ 2021-07-15T22:06:03,383 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:03,383 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:03,383 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:03,384 | ^ 2021-07-15T22:06:03,384 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:03,384 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:03,385 | ^~~~~~~~ 2021-07-15T22:06:03,388 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:03,389 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:03,389 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:06:03,389 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:03,390 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:03,390 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:03,390 | ^ 2021-07-15T22:06:03,391 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:03,391 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:03,391 | ^~~~~~~~ 2021-07-15T22:06:06,640 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:06,641 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o /tmp/ccVNM44V.s 2021-07-15T22:06:06,646 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:06,919 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:06,919 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:06,920 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:06,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gamessformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:06,930 Using built-in specs. 2021-07-15T22:06:06,932 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:06,932 Target: arm-linux-gnueabihf 2021-07-15T22:06:06,932 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:06,932 Thread model: posix 2021-07-15T22:06:06,932 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:06,933 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:06,933 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:06,933 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gamessformat.cpp -quiet -dumpbase gamessformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBSznVp.s 2021-07-15T22:06:06,944 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:06,945 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:06,945 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:06,945 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:06,946 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:06,946 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:06,946 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:06,947 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:06,947 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:06,947 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:06,947 #include "..." search starts here: 2021-07-15T22:06:06,947 #include <...> search starts here: 2021-07-15T22:06:06,948 /usr/include/eigen3 2021-07-15T22:06:06,948 include 2021-07-15T22:06:06,948 /usr/include/python3.9 2021-07-15T22:06:06,948 /usr/include/c++/10 2021-07-15T22:06:06,949 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:06,949 /usr/include/c++/10/backward 2021-07-15T22:06:06,949 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:06,949 /usr/local/include 2021-07-15T22:06:06,949 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:06,950 /usr/include 2021-07-15T22:06:06,950 End of search list. 2021-07-15T22:06:06,950 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:06,950 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:06,951 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:06,961 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:08,611 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:08,612 from include/openbabel/mol.h:43, 2021-07-15T22:06:08,612 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:08,612 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:08,613 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:08,613 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:08,613 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:08,613 | ^ 2021-07-15T22:06:08,614 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:08,614 37 | # define UNUSED(x) x 2021-07-15T22:06:08,614 | ^ 2021-07-15T22:06:09,417 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:09,417 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:09,417 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:09,418 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:09,418 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:09,418 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:09,419 | ^ 2021-07-15T22:06:09,419 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:09,420 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:09,420 | ^~~~~~~~ 2021-07-15T22:06:09,421 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:09,422 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:09,422 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:09,422 | ^ 2021-07-15T22:06:09,423 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:09,423 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:09,423 | ^~~~~~~~ 2021-07-15T22:06:09,440 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:09,441 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:09,441 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:09,441 | ^ 2021-07-15T22:06:09,442 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:09,442 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:09,442 | ^~~~~~~~ 2021-07-15T22:06:09,446 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:09,446 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:09,447 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:09,447 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:09,447 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:09,448 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:09,448 | ^ 2021-07-15T22:06:09,448 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:09,449 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:09,449 | ^~~~~~~~ 2021-07-15T22:06:09,849 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:09,849 ./src/formats/gamessformat.cpp:227:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:09,850 227 | int ndummyatoms = 0; 2021-07-15T22:06:09,850 | ^~~~~~~~~~~ 2021-07-15T22:06:09,868 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:09,868 ./src/formats/gamessformat.cpp:995:14: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] 2021-07-15T22:06:09,869 995 | static const bool cmpfn(const char& a, const char& b) { 2021-07-15T22:06:09,869 | ^~~~~ 2021-07-15T22:06:14,896 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:14,896 from include/openbabel/mol.h:35, 2021-07-15T22:06:14,897 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:14,897 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:14,897 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:14,898 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:14,898 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:14,898 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,035 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:15,035 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:15,080 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:06:15,080 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:18,902 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:18,903 ./src/formats/gamessformat.cpp:520:58: warning: ‘lowFreqModesEnd’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:06:18,903 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) 2021-07-15T22:06:18,903 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:06:18,903 ./src/formats/gamessformat.cpp:520:25: warning: ‘lowFreqModesBegin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:06:18,904 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) 2021-07-15T22:06:18,904 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:18,994 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:18,995 from include/openbabel/mol.h:35, 2021-07-15T22:06:18,995 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:18,995 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:18,995 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:18,995 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:18,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:18,996 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:18,996 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:18,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:18,996 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:18,997 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:18,997 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:18,998 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:18,999 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:18,999 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,002 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,002 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,003 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,003 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,003 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,004 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,004 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,005 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,007 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,007 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,007 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,008 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,008 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,008 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,009 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,009 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,009 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,011 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,012 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,012 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,012 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,013 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,013 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,013 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,014 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,014 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,018 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,019 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,019 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,020 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,020 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,020 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,021 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,021 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:19,021 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:19,023 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:19,024 from include/openbabel/mol.h:35, 2021-07-15T22:06:19,024 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:19,024 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:06:19,024 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,024 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,024 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,033 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,033 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,034 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,034 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,035 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,035 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,036 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,037 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,038 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,038 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,039 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,042 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,042 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,042 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,043 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,044 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,044 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,045 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,045 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,045 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,046 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,047 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,047 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:19,050 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:19,050 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:19,051 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:25,084 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:25,084 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o /tmp/ccBSznVp.s 2021-07-15T22:06:25,089 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:26,369 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:26,369 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:26,369 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:26,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gamessukformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:26,383 Using built-in specs. 2021-07-15T22:06:26,385 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:26,385 Target: arm-linux-gnueabihf 2021-07-15T22:06:26,385 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:26,386 Thread model: posix 2021-07-15T22:06:26,386 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:26,386 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:26,387 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:26,390 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gamessukformat.cpp -quiet -dumpbase gamessukformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccxueBXU.s 2021-07-15T22:06:26,405 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:26,405 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:26,406 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:26,407 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:26,408 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:26,408 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:26,409 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:26,409 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:26,409 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:26,410 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:26,411 #include "..." search starts here: 2021-07-15T22:06:26,411 #include <...> search starts here: 2021-07-15T22:06:26,411 /usr/include/eigen3 2021-07-15T22:06:26,412 include 2021-07-15T22:06:26,412 /usr/include/python3.9 2021-07-15T22:06:26,412 /usr/include/c++/10 2021-07-15T22:06:26,413 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:26,413 /usr/include/c++/10/backward 2021-07-15T22:06:26,413 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:26,414 /usr/local/include 2021-07-15T22:06:26,414 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:26,414 /usr/include 2021-07-15T22:06:26,414 End of search list. 2021-07-15T22:06:26,425 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:26,425 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:26,426 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:26,434 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:28,054 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:28,054 from include/openbabel/mol.h:43, 2021-07-15T22:06:28,054 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:28,055 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:28,055 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:28,055 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:28,055 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:28,055 | ^ 2021-07-15T22:06:28,056 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:28,056 37 | # define UNUSED(x) x 2021-07-15T22:06:28,056 | ^ 2021-07-15T22:06:29,043 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:29,043 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:29,043 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:29,043 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:29,044 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:29,044 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:29,044 | ^ 2021-07-15T22:06:29,044 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:29,044 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:29,045 | ^~~~~~~~ 2021-07-15T22:06:29,048 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:29,049 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:29,049 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:29,049 | ^ 2021-07-15T22:06:29,049 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:29,050 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:29,050 | ^~~~~~~~ 2021-07-15T22:06:29,072 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:29,072 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:29,072 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:29,073 | ^ 2021-07-15T22:06:29,073 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:29,073 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:29,073 | ^~~~~~~~ 2021-07-15T22:06:29,079 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:29,079 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:29,079 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:29,079 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:29,080 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:29,080 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:29,080 | ^ 2021-07-15T22:06:29,080 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:29,081 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:29,081 | ^~~~~~~~ 2021-07-15T22:06:29,565 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadLineZmatrix(OpenBabel::OBMol&, OpenBabel::OBAtom*, std::vector >&, double, int*)’: 2021-07-15T22:06:29,566 ./src/formats/gamessukformat.cpp:307:97: warning: unused parameter ‘factor’ [-Wunused-parameter] 2021-07-15T22:06:29,566 307 | bool GAMESSUKFormat::ReadLineZmatrix(OBMol &mol, OBAtom *atom, vector &tokens, double factor, int *zmatLineCount) 2021-07-15T22:06:29,566 | ~~~~~~~^~~~~~ 2021-07-15T22:06:29,635 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:06:29,635 ./src/formats/gamessukformat.cpp:779:10: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:29,636 779 | bool ok=false; 2021-07-15T22:06:29,636 | ^~ 2021-07-15T22:06:29,639 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:06:29,639 ./src/formats/gamessukformat.cpp:845:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:29,639 845 | bool ok=false; 2021-07-15T22:06:29,639 | ^~ 2021-07-15T22:06:29,642 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:06:29,642 ./src/formats/gamessukformat.cpp:892:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:29,643 892 | bool ok=false; 2021-07-15T22:06:29,643 | ^~ 2021-07-15T22:06:29,682 ./src/formats/gamessukformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:29,682 ./src/formats/gamessukformat.cpp:1207:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:29,683 1207 | bool ok; 2021-07-15T22:06:29,683 | ^~ 2021-07-15T22:06:38,206 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:38,206 from include/openbabel/mol.h:35, 2021-07-15T22:06:38,206 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:38,206 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:38,207 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:38,207 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:38,207 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:38,207 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:38,466 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:06:38,466 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:38,541 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:38,541 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:39,516 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesHessian(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:06:39,517 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:39,517 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:39,517 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:39,521 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:39,522 from include/openbabel/mol.h:35, 2021-07-15T22:06:39,522 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:39,522 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:39,522 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:39,523 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:39,523 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:39,523 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:39,523 from include/openbabel/mol.h:35, 2021-07-15T22:06:39,523 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:39,524 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:39,524 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:39,524 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:39,524 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:40,731 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesForce(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:06:40,732 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:40,732 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:40,732 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:40,736 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:40,737 from include/openbabel/mol.h:35, 2021-07-15T22:06:40,737 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:40,737 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:40,737 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:40,737 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:40,738 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:40,738 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:40,738 from include/openbabel/mol.h:35, 2021-07-15T22:06:40,738 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:40,739 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:40,739 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:40,739 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:40,739 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:41,699 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:06:41,699 from include/openbabel/mol.h:37, 2021-07-15T22:06:41,699 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:41,700 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:41,700 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:06:41,700 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:41,700 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:06:41,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:41,855 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:06:41,855 from include/openbabel/mol.h:37, 2021-07-15T22:06:41,855 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:41,856 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:06:41,856 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:06:41,856 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:41,856 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:06:41,856 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:41,856 502 | std::tuple(__k), 2021-07-15T22:06:41,857 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:41,857 503 | std::tuple<>()); 2021-07-15T22:06:41,857 | ~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,381 /usr/include/c++/10/bits/stl_map.h: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::string)’: 2021-07-15T22:06:42,381 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:42,381 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:06:42,381 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,381 502 | std::tuple(__k), 2021-07-15T22:06:42,382 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,382 503 | std::tuple<>()); 2021-07-15T22:06:42,382 | ~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,876 /usr/include/c++/10/bits/stl_map.h: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadLineCartesian(OpenBabel::OBAtom*, std::vector >&, double)’: 2021-07-15T22:06:42,876 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:42,877 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:06:42,877 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,877 502 | std::tuple(__k), 2021-07-15T22:06:42,877 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,877 503 | std::tuple<>()); 2021-07-15T22:06:42,878 | ~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,880 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:42,880 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:06:42,881 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,881 502 | std::tuple(__k), 2021-07-15T22:06:42,881 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,881 503 | std::tuple<>()); 2021-07-15T22:06:42,881 | ~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,884 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:06:42,884 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:06:42,884 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,884 502 | std::tuple(__k), 2021-07-15T22:06:42,885 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,885 503 | std::tuple<>()); 2021-07-15T22:06:42,885 | ~~~~~~~~~~~~~~~ 2021-07-15T22:06:45,447 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:45,447 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o /tmp/ccxueBXU.s 2021-07-15T22:06:45,454 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:46,876 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:46,877 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:46,877 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:46,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gausscubeformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:46,892 Using built-in specs. 2021-07-15T22:06:46,893 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:46,894 Target: arm-linux-gnueabihf 2021-07-15T22:06:46,894 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:46,894 Thread model: posix 2021-07-15T22:06:46,894 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:46,895 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:46,896 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:46,898 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gausscubeformat.cpp -quiet -dumpbase gausscubeformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccbMWGj8.s 2021-07-15T22:06:46,913 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:46,913 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:46,914 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:46,915 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:46,915 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:46,915 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:46,915 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:46,916 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:46,916 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:46,916 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:46,916 #include "..." search starts here: 2021-07-15T22:06:46,916 #include <...> search starts here: 2021-07-15T22:06:46,917 /usr/include/eigen3 2021-07-15T22:06:46,917 include 2021-07-15T22:06:46,917 /usr/include/python3.9 2021-07-15T22:06:46,917 /usr/include/c++/10 2021-07-15T22:06:46,917 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:46,917 /usr/include/c++/10/backward 2021-07-15T22:06:46,918 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:46,918 /usr/local/include 2021-07-15T22:06:46,918 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:46,918 /usr/include 2021-07-15T22:06:46,918 End of search list. 2021-07-15T22:06:46,918 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:46,919 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:46,919 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:46,935 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:48,560 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:48,560 from include/openbabel/mol.h:43, 2021-07-15T22:06:48,561 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:48,561 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:06:48,561 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:48,561 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:48,561 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:48,561 | ^ 2021-07-15T22:06:48,561 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:48,562 37 | # define UNUSED(x) x 2021-07-15T22:06:48,562 | ^ 2021-07-15T22:06:49,350 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:49,350 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:49,350 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:06:49,351 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:49,351 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:49,351 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:49,351 | ^ 2021-07-15T22:06:49,351 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:49,351 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:49,352 | ^~~~~~~~ 2021-07-15T22:06:49,356 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:49,356 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:49,356 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:49,357 | ^ 2021-07-15T22:06:49,357 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:49,357 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:49,357 | ^~~~~~~~ 2021-07-15T22:06:49,376 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:49,376 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:49,376 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:49,376 | ^ 2021-07-15T22:06:49,377 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:49,377 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:49,377 | ^~~~~~~~ 2021-07-15T22:06:49,383 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:49,383 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:49,383 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:06:49,383 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:49,383 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:49,384 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:49,384 | ^ 2021-07-15T22:06:49,384 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:49,384 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:49,385 | ^~~~~~~~ 2021-07-15T22:06:49,712 ./src/formats/gausscubeformat.cpp: In member function ‘virtual int OpenBabel::OBGaussianCubeFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:06:49,713 ./src/formats/gausscubeformat.cpp:79:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:06:49,713 79 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:06:49,713 | ~~~~^ 2021-07-15T22:06:49,713 ./src/formats/gausscubeformat.cpp:79:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:06:49,713 79 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:06:49,714 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:06:49,809 ./src/formats/gausscubeformat.cpp: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:49,810 ./src/formats/gausscubeformat.cpp:425:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:06:49,810 425 | while (vgd.size() < nCubes) 2021-07-15T22:06:49,810 | ~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:06:49,822 ./src/formats/gausscubeformat.cpp:472:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:06:49,822 472 | while (values.size() < n*nCubes) 2021-07-15T22:06:49,822 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:06:49,847 ./src/formats/gausscubeformat.cpp:107:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:06:49,848 107 | const char* title = pConv->GetTitle(); 2021-07-15T22:06:49,848 | ^~~~~ 2021-07-15T22:06:53,629 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:53,630 from include/openbabel/mol.h:35, 2021-07-15T22:06:53,630 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:53,630 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:06:53,630 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:53,630 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:53,630 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:53,630 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:53,717 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:53,718 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:55,041 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:06:55,041 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:55,041 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:55,041 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:55,044 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:55,044 from include/openbabel/mol.h:35, 2021-07-15T22:06:55,044 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:55,044 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:06:55,044 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:55,045 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:55,045 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:59,600 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:59,600 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o /tmp/ccbMWGj8.s 2021-07-15T22:06:59,606 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:00,326 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:00,326 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:00,326 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:00,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gaussformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:00,338 Using built-in specs. 2021-07-15T22:07:00,339 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:00,339 Target: arm-linux-gnueabihf 2021-07-15T22:07:00,339 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:00,340 Thread model: posix 2021-07-15T22:07:00,340 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:00,340 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:00,340 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:00,340 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gaussformat.cpp -quiet -dumpbase gaussformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBaGRMn.s 2021-07-15T22:07:00,355 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:00,355 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:00,356 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:00,356 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:00,357 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:00,357 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:00,357 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:00,358 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:00,358 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:00,358 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:00,358 #include "..." search starts here: 2021-07-15T22:07:00,358 #include <...> search starts here: 2021-07-15T22:07:00,359 /usr/include/eigen3 2021-07-15T22:07:00,359 include 2021-07-15T22:07:00,359 /usr/include/python3.9 2021-07-15T22:07:00,359 /usr/include/c++/10 2021-07-15T22:07:00,360 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:00,360 /usr/include/c++/10/backward 2021-07-15T22:07:00,360 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:00,361 /usr/local/include 2021-07-15T22:07:00,361 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:00,361 /usr/include 2021-07-15T22:07:00,361 End of search list. 2021-07-15T22:07:00,362 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:00,362 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:00,362 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:00,373 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:02,091 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:02,091 from include/openbabel/mol.h:43, 2021-07-15T22:07:02,092 from include/openbabel/data_utilities.h:25, 2021-07-15T22:07:02,092 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:07:02,092 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:02,092 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:02,093 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:02,093 | ^ 2021-07-15T22:07:02,093 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:02,093 37 | # define UNUSED(x) x 2021-07-15T22:07:02,093 | ^ 2021-07-15T22:07:02,786 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:02,787 from include/openbabel/data_utilities.h:25, 2021-07-15T22:07:02,787 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:07:02,787 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:02,787 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:02,788 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:02,788 | ^ 2021-07-15T22:07:02,788 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:02,788 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:02,789 | ^~~~~~~~ 2021-07-15T22:07:02,791 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:02,791 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:02,791 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:02,792 | ^ 2021-07-15T22:07:02,792 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:02,792 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:02,792 | ^~~~~~~~ 2021-07-15T22:07:02,810 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:02,810 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:02,810 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:02,810 | ^ 2021-07-15T22:07:02,811 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:02,811 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:02,811 | ^~~~~~~~ 2021-07-15T22:07:02,815 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:02,816 from include/openbabel/data_utilities.h:25, 2021-07-15T22:07:02,816 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:07:02,816 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:02,816 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:02,816 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:02,817 | ^ 2021-07-15T22:07:02,817 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:02,817 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:02,817 | ^~~~~~~~ 2021-07-15T22:07:03,190 ./src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OpenBabel::OBMol*, std::string, std::string, int)’: 2021-07-15T22:07:03,190 ./src/formats/gaussformat.cpp:275:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:07:03,190 275 | if (vs.size() >= start) 2021-07-15T22:07:03,191 | ~~~~~~~~~~^~~~~~~~ 2021-07-15T22:07:03,191 ./src/formats/gaussformat.cpp:278:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:07:03,191 278 | for(i=start+1; (i)’: 2021-07-15T22:07:03,199 ./src/formats/gaussformat.cpp:332:17: warning: unused variable ‘pg’ [-Wunused-variable] 2021-07-15T22:07:03,199 332 | const char *pg = obPG.IdentifyPointGroup(); 2021-07-15T22:07:03,199 | ^~ 2021-07-15T22:07:09,867 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:09,867 from include/openbabel/data.h:28, 2021-07-15T22:07:09,867 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:09,867 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:07:09,868 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:09,868 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:07:09,868 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:09,868 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:09,901 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:07:09,901 from include/openbabel/data.h:28, 2021-07-15T22:07:09,902 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:09,902 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:07:09,902 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:09,902 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:07:09,902 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:07:10,103 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:10,103 from include/openbabel/data.h:28, 2021-07-15T22:07:10,104 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:10,104 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:07:10,104 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:10,104 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:07:10,104 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:12,925 ./src/formats/gaussformat.cpp: In member function ‘virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:12,925 ./src/formats/gaussformat.cpp:1164:25: warning: ‘CV’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:12,925 1164 | extract_thermo(&mol,thermo_method,temperature,ezpe, 2021-07-15T22:07:12,926 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:12,926 1165 | Hcorr,Gcorr,E0,CV,RotSymNum,Scomponents); 2021-07-15T22:07:12,926 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:12,926 ./src/formats/gaussformat.cpp:1164:25: warning: ‘E0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:12,927 ./src/formats/gaussformat.cpp:1164:25: warning: ‘Gcorr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:12,927 ./src/formats/gaussformat.cpp:1164:25: warning: ‘Hcorr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:12,928 ./src/formats/gaussformat.cpp:1164:25: warning: ‘ezpe’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:13,035 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:07:13,035 from include/openbabel/data.h:28, 2021-07-15T22:07:13,035 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:13,036 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,036 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:07:13,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:07:13,036 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,037 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:07:13,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:07:13,037 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,037 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:07:13,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:07:13,055 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:13,055 from include/openbabel/data.h:28, 2021-07-15T22:07:13,056 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:13,056 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,056 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:13,056 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:13,057 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,057 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:13,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:13,057 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,057 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:13,058 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:13,080 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:07:13,080 from include/openbabel/data.h:28, 2021-07-15T22:07:13,080 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:07:13,080 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:13,081 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:07:13,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:07:20,208 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:20,209 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o /tmp/ccBaGRMn.s 2021-07-15T22:07:20,214 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:21,752 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:21,752 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:21,752 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:21,759 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gausszmatformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:21,769 Using built-in specs. 2021-07-15T22:07:21,770 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:21,770 Target: arm-linux-gnueabihf 2021-07-15T22:07:21,771 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:21,771 Thread model: posix 2021-07-15T22:07:21,771 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:21,772 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:21,772 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:21,772 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gausszmatformat.cpp -quiet -dumpbase gausszmatformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccXrVMhR.s 2021-07-15T22:07:21,785 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:21,786 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:21,786 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:21,787 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:21,787 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:21,787 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:21,788 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:21,788 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:21,788 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:21,789 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:21,789 #include "..." search starts here: 2021-07-15T22:07:21,789 #include <...> search starts here: 2021-07-15T22:07:21,789 /usr/include/eigen3 2021-07-15T22:07:21,789 include 2021-07-15T22:07:21,790 /usr/include/python3.9 2021-07-15T22:07:21,790 /usr/include/c++/10 2021-07-15T22:07:21,790 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:21,790 /usr/include/c++/10/backward 2021-07-15T22:07:21,791 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:21,791 /usr/local/include 2021-07-15T22:07:21,791 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:21,791 /usr/include 2021-07-15T22:07:21,792 End of search list. 2021-07-15T22:07:21,792 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:21,792 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:21,793 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:21,807 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:23,754 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:23,755 from include/openbabel/mol.h:43, 2021-07-15T22:07:23,755 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:23,755 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:07:23,755 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:23,756 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:23,756 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:23,756 | ^ 2021-07-15T22:07:23,756 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:23,757 37 | # define UNUSED(x) x 2021-07-15T22:07:23,757 | ^ 2021-07-15T22:07:24,741 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:24,742 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:24,742 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:07:24,742 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:24,743 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:24,743 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:24,743 | ^ 2021-07-15T22:07:24,744 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:24,744 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:24,744 | ^~~~~~~~ 2021-07-15T22:07:24,747 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:24,747 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:24,748 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:24,748 | ^ 2021-07-15T22:07:24,748 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:24,749 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:24,749 | ^~~~~~~~ 2021-07-15T22:07:24,771 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:24,771 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:24,772 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:24,772 | ^ 2021-07-15T22:07:24,772 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:24,773 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:24,773 | ^~~~~~~~ 2021-07-15T22:07:24,778 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:24,778 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:24,779 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:07:24,779 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:24,779 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:24,779 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:24,780 | ^ 2021-07-15T22:07:24,780 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:24,780 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:24,781 | ^~~~~~~~ 2021-07-15T22:07:31,866 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:31,867 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o /tmp/ccXrVMhR.s 2021-07-15T22:07:31,878 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:32,457 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:32,457 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:32,457 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:32,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/genbankformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:32,469 Using built-in specs. 2021-07-15T22:07:32,470 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:32,470 Target: arm-linux-gnueabihf 2021-07-15T22:07:32,470 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:32,470 Thread model: posix 2021-07-15T22:07:32,471 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:32,471 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:32,471 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:32,471 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/genbankformat.cpp -quiet -dumpbase genbankformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc9s9Rz6.s 2021-07-15T22:07:32,484 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:32,484 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:32,485 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:32,485 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:32,486 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:32,486 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:32,486 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:32,486 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:32,486 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:32,487 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:32,487 #include "..." search starts here: 2021-07-15T22:07:32,487 #include <...> search starts here: 2021-07-15T22:07:32,487 /usr/include/eigen3 2021-07-15T22:07:32,488 include 2021-07-15T22:07:32,488 /usr/include/python3.9 2021-07-15T22:07:32,488 /usr/include/c++/10 2021-07-15T22:07:32,488 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:32,488 /usr/include/c++/10/backward 2021-07-15T22:07:32,488 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:32,489 /usr/local/include 2021-07-15T22:07:32,489 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:32,489 /usr/include 2021-07-15T22:07:32,489 End of search list. 2021-07-15T22:07:32,489 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:32,489 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:32,490 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:32,507 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:34,108 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:34,108 from include/openbabel/mol.h:43, 2021-07-15T22:07:34,109 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:34,109 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:07:34,109 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:34,109 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:34,109 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:34,109 | ^ 2021-07-15T22:07:34,109 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:34,110 37 | # define UNUSED(x) x 2021-07-15T22:07:34,110 | ^ 2021-07-15T22:07:34,908 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:34,908 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:34,908 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:07:34,908 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:34,908 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:34,909 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:34,909 | ^ 2021-07-15T22:07:34,909 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:34,909 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:34,909 | ^~~~~~~~ 2021-07-15T22:07:34,914 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:34,914 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:34,914 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:34,914 | ^ 2021-07-15T22:07:34,915 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:34,915 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:34,915 | ^~~~~~~~ 2021-07-15T22:07:34,934 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:34,934 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:34,935 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:34,935 | ^ 2021-07-15T22:07:34,935 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:34,935 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:34,935 | ^~~~~~~~ 2021-07-15T22:07:34,941 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:34,941 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:34,941 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:07:34,941 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:34,942 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:34,942 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:34,942 | ^ 2021-07-15T22:07:34,942 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:34,943 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:34,943 | ^~~~~~~~ 2021-07-15T22:07:37,688 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:37,688 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o /tmp/cc9s9Rz6.s 2021-07-15T22:07:37,694 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:37,932 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:37,932 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:37,933 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:37,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/ghemicalformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:37,943 Using built-in specs. 2021-07-15T22:07:37,944 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:37,944 Target: arm-linux-gnueabihf 2021-07-15T22:07:37,945 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:37,945 Thread model: posix 2021-07-15T22:07:37,946 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:37,946 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:37,946 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:37,946 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/ghemicalformat.cpp -quiet -dumpbase ghemicalformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccle2dwn.s 2021-07-15T22:07:37,958 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:37,959 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:37,959 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:37,959 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:37,960 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:37,960 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:37,960 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:37,960 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:37,960 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:37,961 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:37,961 #include "..." search starts here: 2021-07-15T22:07:37,961 #include <...> search starts here: 2021-07-15T22:07:37,961 /usr/include/eigen3 2021-07-15T22:07:37,961 include 2021-07-15T22:07:37,961 /usr/include/python3.9 2021-07-15T22:07:37,962 /usr/include/c++/10 2021-07-15T22:07:37,962 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:37,962 /usr/include/c++/10/backward 2021-07-15T22:07:37,962 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:37,962 /usr/local/include 2021-07-15T22:07:37,962 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:37,963 /usr/include 2021-07-15T22:07:37,963 End of search list. 2021-07-15T22:07:37,963 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:37,963 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:37,964 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:37,981 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:39,625 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:39,626 from include/openbabel/mol.h:43, 2021-07-15T22:07:39,626 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:39,626 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:07:39,626 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:39,626 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:39,626 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:39,627 | ^ 2021-07-15T22:07:39,627 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:39,627 37 | # define UNUSED(x) x 2021-07-15T22:07:39,627 | ^ 2021-07-15T22:07:40,418 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:40,418 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:40,418 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:07:40,419 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:40,419 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:40,419 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:40,419 | ^ 2021-07-15T22:07:40,419 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:40,419 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:40,420 | ^~~~~~~~ 2021-07-15T22:07:40,422 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:40,422 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:40,422 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:40,423 | ^ 2021-07-15T22:07:40,423 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:40,423 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:40,423 | ^~~~~~~~ 2021-07-15T22:07:40,441 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:40,441 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:40,441 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:40,441 | ^ 2021-07-15T22:07:40,441 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:40,442 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:40,442 | ^~~~~~~~ 2021-07-15T22:07:40,446 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:40,446 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:40,447 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:07:40,447 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:40,447 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:40,447 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:40,447 | ^ 2021-07-15T22:07:40,447 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:40,448 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:40,448 | ^~~~~~~~ 2021-07-15T22:07:43,918 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:43,918 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o /tmp/ccle2dwn.s 2021-07-15T22:07:43,929 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:44,251 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:44,251 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:44,251 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:44,253 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/groformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/groformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:44,262 Using built-in specs. 2021-07-15T22:07:44,263 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:44,264 Target: arm-linux-gnueabihf 2021-07-15T22:07:44,264 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:44,264 Thread model: posix 2021-07-15T22:07:44,265 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:44,265 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:44,265 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:44,266 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/groformat.cpp -quiet -dumpbase groformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/groformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHVFeYK.s 2021-07-15T22:07:44,279 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:44,280 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:44,280 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:44,281 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:44,281 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:44,281 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:44,281 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:44,282 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:44,282 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:44,282 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:44,283 #include "..." search starts here: 2021-07-15T22:07:44,283 #include <...> search starts here: 2021-07-15T22:07:44,283 /usr/include/eigen3 2021-07-15T22:07:44,283 include 2021-07-15T22:07:44,283 /usr/include/python3.9 2021-07-15T22:07:44,284 /usr/include/c++/10 2021-07-15T22:07:44,284 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:44,284 /usr/include/c++/10/backward 2021-07-15T22:07:44,284 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:44,284 /usr/local/include 2021-07-15T22:07:44,285 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:44,285 /usr/include 2021-07-15T22:07:44,285 End of search list. 2021-07-15T22:07:44,286 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:44,286 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:44,286 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:44,302 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:46,238 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:46,239 from include/openbabel/mol.h:43, 2021-07-15T22:07:46,239 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:46,239 from ./src/formats/groformat.cpp:16: 2021-07-15T22:07:46,240 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:46,240 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:46,240 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:46,240 | ^ 2021-07-15T22:07:46,241 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:46,241 37 | # define UNUSED(x) x 2021-07-15T22:07:46,241 | ^ 2021-07-15T22:07:47,208 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:47,208 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:47,208 from ./src/formats/groformat.cpp:16: 2021-07-15T22:07:47,208 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:47,209 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:47,209 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:47,209 | ^ 2021-07-15T22:07:47,210 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:47,210 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:47,210 | ^~~~~~~~ 2021-07-15T22:07:47,213 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:47,213 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:47,214 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:47,214 | ^ 2021-07-15T22:07:47,214 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:47,215 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:47,215 | ^~~~~~~~ 2021-07-15T22:07:47,236 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:47,236 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:47,237 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:47,237 | ^ 2021-07-15T22:07:47,237 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:47,237 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:47,238 | ^~~~~~~~ 2021-07-15T22:07:47,243 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:47,243 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:47,243 from ./src/formats/groformat.cpp:16: 2021-07-15T22:07:47,244 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:47,244 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:47,244 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:47,244 | ^ 2021-07-15T22:07:47,245 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:47,245 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:47,245 | ^~~~~~~~ 2021-07-15T22:07:52,414 ./src/formats/groformat.cpp: In member function ‘virtual bool OpenBabel::GROFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:52,414 ./src/formats/groformat.cpp:273:19: warning: ‘res’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:52,414 273 | res->AddAtom(atom); 2021-07-15T22:07:52,415 | ~~~~~~~~~~~~^~~~~~ 2021-07-15T22:07:54,590 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:54,590 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/groformat.o /tmp/ccHVFeYK.s 2021-07-15T22:07:54,597 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:55,070 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:55,070 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:55,071 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:55,073 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gromos96format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:55,083 Using built-in specs. 2021-07-15T22:07:55,084 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:55,085 Target: arm-linux-gnueabihf 2021-07-15T22:07:55,085 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:55,086 Thread model: posix 2021-07-15T22:07:55,086 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:55,086 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:55,087 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:55,090 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gromos96format.cpp -quiet -dumpbase gromos96format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccVUc6gX.s 2021-07-15T22:07:55,103 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:55,104 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:55,104 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:55,104 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:55,105 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:55,105 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:55,106 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:55,106 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:55,106 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:55,106 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:55,106 #include "..." search starts here: 2021-07-15T22:07:55,107 #include <...> search starts here: 2021-07-15T22:07:55,107 /usr/include/eigen3 2021-07-15T22:07:55,107 include 2021-07-15T22:07:55,107 /usr/include/python3.9 2021-07-15T22:07:55,107 /usr/include/c++/10 2021-07-15T22:07:55,107 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:55,108 /usr/include/c++/10/backward 2021-07-15T22:07:55,108 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:55,108 /usr/local/include 2021-07-15T22:07:55,108 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:55,108 /usr/include 2021-07-15T22:07:55,108 End of search list. 2021-07-15T22:07:55,109 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:55,109 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:55,109 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:55,121 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:56,695 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:56,695 from include/openbabel/mol.h:43, 2021-07-15T22:07:56,695 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:56,696 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:07:56,696 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:56,696 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:56,696 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:56,696 | ^ 2021-07-15T22:07:56,697 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:56,697 37 | # define UNUSED(x) x 2021-07-15T22:07:56,697 | ^ 2021-07-15T22:07:57,484 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:57,485 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:57,485 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:07:57,485 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:57,485 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:57,486 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:57,486 | ^ 2021-07-15T22:07:57,486 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:57,486 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:57,487 | ^~~~~~~~ 2021-07-15T22:07:57,489 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:57,489 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:57,490 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:57,490 | ^ 2021-07-15T22:07:57,490 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:57,490 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:57,490 | ^~~~~~~~ 2021-07-15T22:07:57,508 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:57,508 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:57,508 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:57,509 | ^ 2021-07-15T22:07:57,509 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:57,509 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:57,509 | ^~~~~~~~ 2021-07-15T22:07:57,514 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:57,514 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:57,514 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:07:57,514 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:57,514 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:57,515 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:57,515 | ^ 2021-07-15T22:07:57,515 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:57,515 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:57,516 | ^~~~~~~~ 2021-07-15T22:07:59,587 In file included from /usr/include/string.h:495, 2021-07-15T22:07:59,587 from /usr/include/c++/10/cstring:42, 2021-07-15T22:07:59,587 from include/openbabel/data.h:26, 2021-07-15T22:07:59,588 from include/openbabel/mol.h:46, 2021-07-15T22:07:59,588 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:59,588 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:07:59,588 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:07:59,588 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:140:20: 2021-07-15T22:07:59,589 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:07:59,589 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:07:59,589 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:59,589 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:07:59,589 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:132:20: 2021-07-15T22:07:59,590 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:07:59,590 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:07:59,590 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:59,590 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:07:59,590 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:134:20: 2021-07-15T22:07:59,590 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:07:59,591 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:07:59,591 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:00,253 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:00,253 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o /tmp/ccVUc6gX.s 2021-07-15T22:08:00,258 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:00,456 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:00,457 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:00,457 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:00,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gulpformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:00,468 Using built-in specs. 2021-07-15T22:08:00,469 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:00,470 Target: arm-linux-gnueabihf 2021-07-15T22:08:00,470 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:00,470 Thread model: posix 2021-07-15T22:08:00,471 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:00,471 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:00,472 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:00,474 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gulpformat.cpp -quiet -dumpbase gulpformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccFDaWVb.s 2021-07-15T22:08:00,487 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:00,487 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:00,487 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:00,488 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:00,488 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:00,488 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:00,488 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:00,488 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:00,489 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:00,489 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:00,489 #include "..." search starts here: 2021-07-15T22:08:00,489 #include <...> search starts here: 2021-07-15T22:08:00,489 /usr/include/eigen3 2021-07-15T22:08:00,489 include 2021-07-15T22:08:00,490 /usr/include/python3.9 2021-07-15T22:08:00,490 /usr/include/c++/10 2021-07-15T22:08:00,490 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:00,490 /usr/include/c++/10/backward 2021-07-15T22:08:00,490 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:00,490 /usr/local/include 2021-07-15T22:08:00,491 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:00,491 /usr/include 2021-07-15T22:08:00,491 End of search list. 2021-07-15T22:08:00,491 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:00,491 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:00,492 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:00,504 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:02,153 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:02,153 from include/openbabel/mol.h:43, 2021-07-15T22:08:02,153 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:02,154 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:08:02,154 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:02,154 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:02,154 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:02,155 | ^ 2021-07-15T22:08:02,155 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:02,155 37 | # define UNUSED(x) x 2021-07-15T22:08:02,155 | ^ 2021-07-15T22:08:02,942 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:02,942 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:02,942 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:08:02,943 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:02,943 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:02,943 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:02,943 | ^ 2021-07-15T22:08:02,944 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:02,944 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:02,944 | ^~~~~~~~ 2021-07-15T22:08:02,946 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:02,947 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:02,947 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:02,947 | ^ 2021-07-15T22:08:02,947 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:02,948 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:02,948 | ^~~~~~~~ 2021-07-15T22:08:02,965 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:02,966 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:02,966 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:02,966 | ^ 2021-07-15T22:08:02,966 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:02,967 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:02,967 | ^~~~~~~~ 2021-07-15T22:08:02,971 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:02,971 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:02,972 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:08:02,972 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:02,972 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:02,972 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:02,972 | ^ 2021-07-15T22:08:02,973 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:02,973 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:02,973 | ^~~~~~~~ 2021-07-15T22:08:03,299 ./src/formats/gulpformat.cpp: In member function ‘virtual int OpenBabel::GULPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:08:03,299 ./src/formats/gulpformat.cpp:49:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:08:03,299 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:03,299 | ~~~~^ 2021-07-15T22:08:03,300 ./src/formats/gulpformat.cpp:49:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:08:03,300 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:03,300 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:08:07,461 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,461 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o /tmp/ccFDaWVb.s 2021-07-15T22:08:07,468 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:07,863 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:07,864 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:07,864 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/hinformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/hinformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:07,874 Using built-in specs. 2021-07-15T22:08:07,875 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:07,876 Target: arm-linux-gnueabihf 2021-07-15T22:08:07,876 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:07,876 Thread model: posix 2021-07-15T22:08:07,877 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:07,877 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:07,877 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,878 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/hinformat.cpp -quiet -dumpbase hinformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/hinformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmRV2DG.s 2021-07-15T22:08:07,890 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:07,891 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:07,891 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:07,892 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:07,892 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:07,892 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:07,892 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:07,893 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:07,893 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:07,893 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:07,893 #include "..." search starts here: 2021-07-15T22:08:07,894 #include <...> search starts here: 2021-07-15T22:08:07,894 /usr/include/eigen3 2021-07-15T22:08:07,894 include 2021-07-15T22:08:07,894 /usr/include/python3.9 2021-07-15T22:08:07,894 /usr/include/c++/10 2021-07-15T22:08:07,895 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:07,895 /usr/include/c++/10/backward 2021-07-15T22:08:07,895 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:07,896 /usr/local/include 2021-07-15T22:08:07,896 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:07,896 /usr/include 2021-07-15T22:08:07,896 End of search list. 2021-07-15T22:08:07,896 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:07,897 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:07,897 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:07,912 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:09,868 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:09,869 from include/openbabel/mol.h:43, 2021-07-15T22:08:09,869 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:09,869 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:08:09,869 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:09,870 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:09,870 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:09,870 | ^ 2021-07-15T22:08:09,870 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:09,871 37 | # define UNUSED(x) x 2021-07-15T22:08:09,871 | ^ 2021-07-15T22:08:10,842 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:10,842 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:10,842 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:08:10,842 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,842 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,842 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:10,843 | ^ 2021-07-15T22:08:10,843 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:10,843 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:10,843 | ^~~~~~~~ 2021-07-15T22:08:10,846 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,846 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,846 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:10,846 | ^ 2021-07-15T22:08:10,847 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:10,847 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:10,847 | ^~~~~~~~ 2021-07-15T22:08:10,864 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,864 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,864 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:10,865 | ^ 2021-07-15T22:08:10,865 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:10,865 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:10,865 | ^~~~~~~~ 2021-07-15T22:08:10,871 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:10,871 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:10,871 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:08:10,871 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,872 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,872 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:10,872 | ^ 2021-07-15T22:08:10,872 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:10,873 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:10,873 | ^~~~~~~~ 2021-07-15T22:08:14,595 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,596 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/hinformat.o /tmp/ccmRV2DG.s 2021-07-15T22:08:14,601 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:14,873 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:14,873 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:14,874 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,875 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/jaguarformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:14,885 Using built-in specs. 2021-07-15T22:08:14,886 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:14,887 Target: arm-linux-gnueabihf 2021-07-15T22:08:14,887 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:14,887 Thread model: posix 2021-07-15T22:08:14,888 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:14,888 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:14,889 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,892 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/jaguarformat.cpp -quiet -dumpbase jaguarformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc58J7yV.s 2021-07-15T22:08:14,904 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:14,905 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:14,906 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:14,906 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:14,906 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:14,907 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:14,907 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:14,907 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:14,908 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:14,908 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:14,908 #include "..." search starts here: 2021-07-15T22:08:14,908 #include <...> search starts here: 2021-07-15T22:08:14,908 /usr/include/eigen3 2021-07-15T22:08:14,909 include 2021-07-15T22:08:14,909 /usr/include/python3.9 2021-07-15T22:08:14,909 /usr/include/c++/10 2021-07-15T22:08:14,910 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:14,910 /usr/include/c++/10/backward 2021-07-15T22:08:14,910 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:14,910 /usr/local/include 2021-07-15T22:08:14,911 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:14,911 /usr/include 2021-07-15T22:08:14,911 End of search list. 2021-07-15T22:08:14,911 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:14,912 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:14,912 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:14,925 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:16,495 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:16,495 from include/openbabel/mol.h:43, 2021-07-15T22:08:16,495 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:16,495 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:08:16,496 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:16,496 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:16,496 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:16,496 | ^ 2021-07-15T22:08:16,496 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:16,496 37 | # define UNUSED(x) x 2021-07-15T22:08:16,496 | ^ 2021-07-15T22:08:17,288 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:17,288 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:17,289 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:08:17,289 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:17,289 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:17,290 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:17,290 | ^ 2021-07-15T22:08:17,290 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:17,291 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:17,291 | ^~~~~~~~ 2021-07-15T22:08:17,293 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:17,293 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:17,293 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:17,294 | ^ 2021-07-15T22:08:17,294 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:17,294 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:17,295 | ^~~~~~~~ 2021-07-15T22:08:17,312 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:17,312 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:17,313 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:17,313 | ^ 2021-07-15T22:08:17,313 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:17,314 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:17,314 | ^~~~~~~~ 2021-07-15T22:08:17,318 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:17,318 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:17,318 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:08:17,318 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:17,319 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:17,319 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:17,319 | ^ 2021-07-15T22:08:17,320 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:17,320 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:17,320 | ^~~~~~~~ 2021-07-15T22:08:21,054 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:21,055 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o /tmp/cc58J7yV.s 2021-07-15T22:08:21,061 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:21,422 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:21,422 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:21,424 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:21,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/lmpdatformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:21,434 Using built-in specs. 2021-07-15T22:08:21,436 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:21,436 Target: arm-linux-gnueabihf 2021-07-15T22:08:21,437 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:21,437 Thread model: posix 2021-07-15T22:08:21,437 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:21,438 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:21,439 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:21,442 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/lmpdatformat.cpp -quiet -dumpbase lmpdatformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwJUamg.s 2021-07-15T22:08:21,457 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:21,458 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:21,458 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:21,458 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:21,459 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:21,459 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:21,459 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:21,460 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:21,460 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:21,460 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:21,461 #include "..." search starts here: 2021-07-15T22:08:21,461 #include <...> search starts here: 2021-07-15T22:08:21,461 /usr/include/eigen3 2021-07-15T22:08:21,461 include 2021-07-15T22:08:21,461 /usr/include/python3.9 2021-07-15T22:08:21,462 /usr/include/c++/10 2021-07-15T22:08:21,462 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:21,462 /usr/include/c++/10/backward 2021-07-15T22:08:21,462 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:21,463 /usr/local/include 2021-07-15T22:08:21,463 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:21,463 /usr/include 2021-07-15T22:08:21,463 End of search list. 2021-07-15T22:08:21,464 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:21,464 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:21,464 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:21,479 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:23,120 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:23,120 from include/openbabel/mol.h:43, 2021-07-15T22:08:23,121 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:23,121 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:08:23,121 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:23,121 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:23,122 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:23,122 | ^ 2021-07-15T22:08:23,122 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:23,123 37 | # define UNUSED(x) x 2021-07-15T22:08:23,123 | ^ 2021-07-15T22:08:23,901 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:23,901 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:23,902 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:08:23,902 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:23,902 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:23,902 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:23,903 | ^ 2021-07-15T22:08:23,903 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:23,903 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:23,904 | ^~~~~~~~ 2021-07-15T22:08:23,906 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:23,906 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:23,906 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:23,907 | ^ 2021-07-15T22:08:23,907 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:23,907 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:23,907 | ^~~~~~~~ 2021-07-15T22:08:23,925 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:23,925 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:23,925 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:23,925 | ^ 2021-07-15T22:08:23,926 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:23,926 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:23,926 | ^~~~~~~~ 2021-07-15T22:08:23,930 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:23,931 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:23,931 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:08:23,931 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:23,931 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:23,932 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:23,932 | ^ 2021-07-15T22:08:23,932 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:23,933 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:23,933 | ^~~~~~~~ 2021-07-15T22:08:24,332 ./src/formats/lmpdatformat.cpp: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:24,333 ./src/formats/lmpdatformat.cpp:271:13: warning: unused variable ‘length’ [-Wunused-variable] 2021-07-15T22:08:24,333 271 | double length=cmax-cmin; 2021-07-15T22:08:24,333 | ^~~~~~ 2021-07-15T22:08:24,376 ./src/formats/lmpdatformat.cpp:361:11: warning: unused variable ‘atomid’ [-Wunused-variable] 2021-07-15T22:08:24,376 361 | int atomid=5; 2021-07-15T22:08:24,376 | ^~~~~~ 2021-07-15T22:08:24,377 ./src/formats/lmpdatformat.cpp:362:14: warning: unused variable ‘charge’ [-Wunused-variable] 2021-07-15T22:08:24,377 362 | double charge=0.5; 2021-07-15T22:08:24,378 | ^~~~~~ 2021-07-15T22:08:27,718 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:08:27,718 from include/openbabel/mol.h:37, 2021-07-15T22:08:27,719 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:27,719 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:08:27,719 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:08:27,720 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:27,720 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:08:27,720 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:27,842 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:08:27,843 from include/openbabel/mol.h:37, 2021-07-15T22:08:27,843 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:27,843 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:08:27,843 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:08:27,844 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:27,844 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:27,844 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:27,844 502 | std::tuple(__k), 2021-07-15T22:08:27,845 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:27,845 503 | std::tuple<>()); 2021-07-15T22:08:27,845 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,163 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:29,164 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:29,164 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:29,164 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,164 502 | std::tuple(__k), 2021-07-15T22:08:29,165 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,165 503 | std::tuple<>()); 2021-07-15T22:08:29,165 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,186 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:29,186 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:29,186 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,187 502 | std::tuple(__k), 2021-07-15T22:08:29,187 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:29,187 503 | std::tuple<>()); 2021-07-15T22:08:29,187 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:32,349 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:32,349 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o /tmp/ccwJUamg.s 2021-07-15T22:08:32,355 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:33,105 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:33,105 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:33,105 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:33,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/lpmdformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:33,118 Using built-in specs. 2021-07-15T22:08:33,119 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:33,120 Target: arm-linux-gnueabihf 2021-07-15T22:08:33,120 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:33,120 Thread model: posix 2021-07-15T22:08:33,120 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:33,121 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:33,122 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:33,124 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/lpmdformat.cpp -quiet -dumpbase lpmdformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cccFeBqI.s 2021-07-15T22:08:33,139 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:33,139 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:33,139 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:33,140 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:33,141 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:33,141 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:33,141 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:33,141 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:33,141 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:33,141 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:33,142 #include "..." search starts here: 2021-07-15T22:08:33,142 #include <...> search starts here: 2021-07-15T22:08:33,142 /usr/include/eigen3 2021-07-15T22:08:33,142 include 2021-07-15T22:08:33,142 /usr/include/python3.9 2021-07-15T22:08:33,143 /usr/include/c++/10 2021-07-15T22:08:33,143 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:33,143 /usr/include/c++/10/backward 2021-07-15T22:08:33,143 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:33,143 /usr/local/include 2021-07-15T22:08:33,143 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:33,144 /usr/include 2021-07-15T22:08:33,144 End of search list. 2021-07-15T22:08:33,144 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:33,144 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:33,144 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:33,164 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:34,802 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:34,802 from include/openbabel/mol.h:43, 2021-07-15T22:08:34,802 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:34,802 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:08:34,803 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:34,803 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:34,803 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:34,803 | ^ 2021-07-15T22:08:34,803 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:34,803 37 | # define UNUSED(x) x 2021-07-15T22:08:34,803 | ^ 2021-07-15T22:08:35,601 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:35,601 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:35,601 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:08:35,601 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:35,602 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:35,602 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:35,602 | ^ 2021-07-15T22:08:35,602 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:35,602 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:35,603 | ^~~~~~~~ 2021-07-15T22:08:35,607 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:35,607 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:35,607 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:35,608 | ^ 2021-07-15T22:08:35,608 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:35,608 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:35,608 | ^~~~~~~~ 2021-07-15T22:08:35,627 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:35,628 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:35,628 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:35,628 | ^ 2021-07-15T22:08:35,628 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:35,628 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:35,629 | ^~~~~~~~ 2021-07-15T22:08:35,634 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:35,634 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:35,635 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:08:35,635 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:35,635 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:35,635 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:35,635 | ^ 2021-07-15T22:08:35,636 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:35,636 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:35,636 | ^~~~~~~~ 2021-07-15T22:08:35,985 ./src/formats/lpmdformat.cpp: In member function ‘virtual int OpenBabel::LpmdFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:08:35,986 ./src/formats/lpmdformat.cpp:56:31: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:08:35,986 56 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:35,986 | ~~~~^ 2021-07-15T22:08:35,986 ./src/formats/lpmdformat.cpp:56:48: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:08:35,986 56 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:35,986 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:08:35,993 ./src/formats/lpmdformat.cpp: In member function ‘bool OpenBabel::LpmdFormat::ReadHeader(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:08:35,993 ./src/formats/lpmdformat.cpp:91:56: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:08:35,993 91 | bool LpmdFormat::ReadHeader( std::istream &ifs, OBMol &mol ) 2021-07-15T22:08:35,993 | ~~~~~~~^~~ 2021-07-15T22:08:35,999 ./src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:35,999 ./src/formats/lpmdformat.cpp:190:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:35,999 190 | if(int(headers.size()-1)!=tokens.size()) 2021-07-15T22:08:36,000 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-15T22:08:36,005 ./src/formats/lpmdformat.cpp:204:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:36,006 204 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR 2021-07-15T22:08:36,006 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:08:36,012 ./src/formats/lpmdformat.cpp:237:11: warning: unused variable ‘FX’ [-Wunused-variable] 2021-07-15T22:08:36,013 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:08:36,013 | ^~ 2021-07-15T22:08:36,013 ./src/formats/lpmdformat.cpp:237:32: warning: unused variable ‘FY’ [-Wunused-variable] 2021-07-15T22:08:36,013 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:08:36,013 | ^~ 2021-07-15T22:08:36,014 ./src/formats/lpmdformat.cpp:237:53: warning: unused variable ‘FZ’ [-Wunused-variable] 2021-07-15T22:08:36,014 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:08:36,014 | ^~ 2021-07-15T22:08:36,035 ./src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:36,035 ./src/formats/lpmdformat.cpp:360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:08:36,035 360 | for(int i=0; i < mol.NumAtoms() ; ++i) 2021-07-15T22:08:36,035 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:08:36,038 ./src/formats/lpmdformat.cpp:376:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:08:36,039 376 | for(int i=0;i::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:08:39,733 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:08:39,733 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:08:39,733 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:39,784 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:08:39,784 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:39,785 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:39,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,191 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:43,191 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,191 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,192 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,192 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,192 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,193 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,193 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,194 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,194 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,199 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,199 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,199 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,200 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,200 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,201 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:43,201 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:43,201 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:43,202 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:44,949 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:44,949 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o /tmp/cccFeBqI.s 2021-07-15T22:08:44,954 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:45,907 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:45,907 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:45,907 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:45,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mdffformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:45,920 Using built-in specs. 2021-07-15T22:08:45,921 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:45,922 Target: arm-linux-gnueabihf 2021-07-15T22:08:45,922 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:45,922 Thread model: posix 2021-07-15T22:08:45,923 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:45,923 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:45,924 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:45,926 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mdffformat.cpp -quiet -dumpbase mdffformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc1ZSJXY.s 2021-07-15T22:08:45,938 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:45,938 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:45,939 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:45,939 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:45,939 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:45,939 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:45,940 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:45,940 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:45,940 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:45,940 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:45,940 #include "..." search starts here: 2021-07-15T22:08:45,940 #include <...> search starts here: 2021-07-15T22:08:45,941 /usr/include/eigen3 2021-07-15T22:08:45,941 include 2021-07-15T22:08:45,941 /usr/include/python3.9 2021-07-15T22:08:45,941 /usr/include/c++/10 2021-07-15T22:08:45,941 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:45,941 /usr/include/c++/10/backward 2021-07-15T22:08:45,942 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:45,942 /usr/local/include 2021-07-15T22:08:45,942 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:45,942 /usr/include 2021-07-15T22:08:45,942 End of search list. 2021-07-15T22:08:45,942 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:45,943 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:45,943 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:45,956 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:47,552 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:47,553 from include/openbabel/mol.h:43, 2021-07-15T22:08:47,553 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:47,553 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:08:47,553 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:47,554 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:47,554 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:47,554 | ^ 2021-07-15T22:08:47,554 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:47,554 37 | # define UNUSED(x) x 2021-07-15T22:08:47,555 | ^ 2021-07-15T22:08:48,351 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:48,351 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:48,351 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:08:48,352 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,352 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,352 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:48,352 | ^ 2021-07-15T22:08:48,353 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:48,353 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:48,353 | ^~~~~~~~ 2021-07-15T22:08:48,356 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,356 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,356 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:48,356 | ^ 2021-07-15T22:08:48,356 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:48,357 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:48,357 | ^~~~~~~~ 2021-07-15T22:08:48,375 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,375 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,375 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:48,375 | ^ 2021-07-15T22:08:48,376 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:48,376 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:48,376 | ^~~~~~~~ 2021-07-15T22:08:48,380 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:48,381 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:48,381 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:08:48,381 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,381 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,381 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:48,382 | ^ 2021-07-15T22:08:48,382 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:48,382 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:48,382 | ^~~~~~~~ 2021-07-15T22:08:48,863 ./src/formats/mdffformat.cpp: In member function ‘virtual int OpenBabel::MDFFFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:08:48,864 ./src/formats/mdffformat.cpp:71:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:08:48,864 71 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:48,864 | ~~~~^ 2021-07-15T22:08:48,864 ./src/formats/mdffformat.cpp:71:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:08:48,865 71 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:48,865 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:08:48,899 ./src/formats/mdffformat.cpp: In member function ‘virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:48,900 ./src/formats/mdffformat.cpp:241:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:48,900 241 | for(int i = 0; i < atom_t_prop.size(); i++) 2021-07-15T22:08:48,900 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:48,902 ./src/formats/mdffformat.cpp:262:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:08:48,902 262 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) 2021-07-15T22:08:48,902 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:48,913 ./src/formats/mdffformat.cpp: In member function ‘bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const’: 2021-07-15T22:08:48,913 ./src/formats/mdffformat.cpp:321:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:48,914 321 | for(int i = 0; i < vs.size(); i++) 2021-07-15T22:08:48,914 | ~~^~~~~~~~~~~ 2021-07-15T22:08:48,952 ./src/formats/mdffformat.cpp: In member function ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:48,953 ./src/formats/mdffformat.cpp:380:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:48,953 380 | for(int i = 0; i < vs.size(); i++) 2021-07-15T22:08:48,953 | ~~^~~~~~~~~~~ 2021-07-15T22:08:49,042 ./src/formats/mdffformat.cpp:435:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:49,042 435 | for (int i = 0; i < atypes_def.size(); i++) 2021-07-15T22:08:49,042 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:49,043 ./src/formats/mdffformat.cpp:442:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:49,043 442 | for (int i = 0; i < atypes_def.size(); i++) 2021-07-15T22:08:49,044 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:49,089 ./src/formats/mdffformat.cpp:492:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:08:49,089 492 | for(int j = 0; j < atypes_def.size(); j++) 2021-07-15T22:08:49,089 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:55,886 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:08:55,886 from include/openbabel/mol.h:37, 2021-07-15T22:08:55,886 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:55,887 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:08:55,887 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:08:55,887 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:55,887 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:08:55,888 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,823 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:08:56,823 from include/openbabel/mol.h:37, 2021-07-15T22:08:56,823 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:56,823 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:08:56,824 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:56,824 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:56,824 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:56,824 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,824 502 | std::tuple(__k), 2021-07-15T22:08:56,825 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,825 503 | std::tuple<>()); 2021-07-15T22:08:56,825 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,825 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:56,826 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:56,826 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,826 502 | std::tuple(__k), 2021-07-15T22:08:56,826 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,827 503 | std::tuple<>()); 2021-07-15T22:08:56,827 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,827 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:56,827 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:56,827 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,828 502 | std::tuple(__k), 2021-07-15T22:08:56,828 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,828 503 | std::tuple<>()); 2021-07-15T22:08:56,828 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,832 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:08:56,832 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:08:56,832 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,833 502 | std::tuple(__k), 2021-07-15T22:08:56,833 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:56,833 503 | std::tuple<>()); 2021-07-15T22:08:56,833 | ~~~~~~~~~~~~~~~ 2021-07-15T22:08:59,112 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:59,113 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o /tmp/cc1ZSJXY.s 2021-07-15T22:08:59,120 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:59,983 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:59,983 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:59,983 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:59,987 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mdlformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:59,998 Using built-in specs. 2021-07-15T22:08:59,999 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:59,999 Target: arm-linux-gnueabihf 2021-07-15T22:08:59,999 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:00,000 Thread model: posix 2021-07-15T22:09:00,000 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:00,000 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:00,000 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:00,000 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mdlformat.cpp -quiet -dumpbase mdlformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwfq1jc.s 2021-07-15T22:09:00,016 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:00,016 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:00,017 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:00,018 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:00,018 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:00,018 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:00,018 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:00,018 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:00,019 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:00,019 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:00,019 #include "..." search starts here: 2021-07-15T22:09:00,019 #include <...> search starts here: 2021-07-15T22:09:00,019 /usr/include/eigen3 2021-07-15T22:09:00,020 include 2021-07-15T22:09:00,020 /usr/include/python3.9 2021-07-15T22:09:00,020 /usr/include/c++/10 2021-07-15T22:09:00,020 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:00,020 /usr/include/c++/10/backward 2021-07-15T22:09:00,020 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:00,021 /usr/local/include 2021-07-15T22:09:00,021 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:00,021 /usr/include 2021-07-15T22:09:00,021 End of search list. 2021-07-15T22:09:00,021 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:00,021 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:00,022 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:00,037 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:02,301 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:02,302 from include/openbabel/mol.h:43, 2021-07-15T22:09:02,302 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:02,302 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:09:02,303 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:02,303 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:02,303 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:02,303 | ^ 2021-07-15T22:09:02,303 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:02,304 37 | # define UNUSED(x) x 2021-07-15T22:09:02,304 | ^ 2021-07-15T22:09:03,001 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:03,001 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:03,002 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:09:03,002 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,002 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,002 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:03,003 | ^ 2021-07-15T22:09:03,003 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:03,003 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:03,003 | ^~~~~~~~ 2021-07-15T22:09:03,006 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,006 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,006 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:03,007 | ^ 2021-07-15T22:09:03,007 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:03,007 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:03,007 | ^~~~~~~~ 2021-07-15T22:09:03,025 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,025 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,026 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:03,026 | ^ 2021-07-15T22:09:03,026 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:03,026 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:03,026 | ^~~~~~~~ 2021-07-15T22:09:03,031 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:03,031 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:03,031 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:09:03,031 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,031 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,032 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:03,032 | ^ 2021-07-15T22:09:03,032 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:03,032 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:03,033 | ^~~~~~~~ 2021-07-15T22:09:03,690 In file included from ./src/formats/mdlformat.cpp:34: 2021-07-15T22:09:03,691 include/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: 2021-07-15T22:09:03,691 include/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,691 51 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,691 | ^~ 2021-07-15T22:09:03,692 include/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,692 51 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,692 | ^~~~~ 2021-07-15T22:09:03,692 include/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,692 64 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,693 | ^~ 2021-07-15T22:09:03,693 include/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,693 64 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,693 | ^~~~~ 2021-07-15T22:09:03,693 include/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,694 77 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,694 | ^~ 2021-07-15T22:09:03,694 include/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,694 77 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,694 | ^~~~~ 2021-07-15T22:09:03,695 include/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,695 90 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,695 | ^~ 2021-07-15T22:09:03,695 include/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,695 90 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,696 | ^~~~~ 2021-07-15T22:09:03,696 include/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,696 103 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,696 | ^~ 2021-07-15T22:09:03,696 include/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,697 103 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,697 | ^~~~~ 2021-07-15T22:09:03,697 include/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,697 116 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,697 | ^~ 2021-07-15T22:09:03,697 include/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,698 116 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,698 | ^~~~~ 2021-07-15T22:09:03,698 include/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,698 119 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,698 | ^~ 2021-07-15T22:09:03,699 include/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,699 119 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,699 | ^~~~~ 2021-07-15T22:09:03,699 include/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,699 121 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,700 | ^~ 2021-07-15T22:09:03,700 include/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,700 121 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,700 | ^~~~~ 2021-07-15T22:09:03,700 include/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,701 134 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,701 | ^~ 2021-07-15T22:09:03,701 include/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,701 134 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,701 | ^~~~~ 2021-07-15T22:09:03,701 include/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,702 137 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,702 | ^~ 2021-07-15T22:09:03,702 include/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,702 137 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,702 | ^~~~~ 2021-07-15T22:09:03,703 include/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,703 139 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,703 | ^~ 2021-07-15T22:09:03,703 include/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,703 139 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,703 | ^~~~~ 2021-07-15T22:09:03,704 include/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,704 152 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,704 | ^~ 2021-07-15T22:09:03,704 include/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,705 152 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,705 | ^~~~~ 2021-07-15T22:09:03,705 include/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,705 155 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,705 | ^~ 2021-07-15T22:09:03,705 include/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,706 155 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,706 | ^~~~~ 2021-07-15T22:09:03,706 include/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,706 157 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,706 | ^~ 2021-07-15T22:09:03,706 include/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,707 157 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,707 | ^~~~~ 2021-07-15T22:09:03,707 include/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,707 170 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,707 | ^~ 2021-07-15T22:09:03,708 include/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,708 170 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,708 | ^~~~~ 2021-07-15T22:09:03,708 include/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,708 173 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,708 | ^~ 2021-07-15T22:09:03,709 include/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,709 173 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,709 | ^~~~~ 2021-07-15T22:09:03,709 include/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,709 175 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,709 | ^~ 2021-07-15T22:09:03,709 include/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,710 175 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,710 | ^~~~~ 2021-07-15T22:09:03,710 include/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,710 188 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,710 | ^~ 2021-07-15T22:09:03,711 include/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,711 188 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,711 | ^~~~~ 2021-07-15T22:09:03,711 include/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,711 191 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,712 | ^~ 2021-07-15T22:09:03,712 include/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,712 191 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,712 | ^~~~~ 2021-07-15T22:09:03,713 include/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,713 193 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,713 | ^~ 2021-07-15T22:09:03,713 include/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,713 193 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,714 | ^~~~~ 2021-07-15T22:09:03,714 include/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,714 206 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,714 | ^~ 2021-07-15T22:09:03,715 include/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,715 206 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,715 | ^~~~~ 2021-07-15T22:09:03,715 include/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,715 209 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,716 | ^~ 2021-07-15T22:09:03,716 include/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,716 209 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,716 | ^~~~~ 2021-07-15T22:09:03,717 include/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,717 211 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,717 | ^~ 2021-07-15T22:09:03,717 include/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,717 211 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,718 | ^~~~~ 2021-07-15T22:09:03,718 include/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,718 223 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,718 | ^~ 2021-07-15T22:09:03,719 include/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,719 223 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,719 | ^~~~~ 2021-07-15T22:09:03,719 include/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,719 226 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,720 | ^~ 2021-07-15T22:09:03,720 include/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,720 226 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,720 | ^~~~~ 2021-07-15T22:09:03,720 include/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,721 228 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,721 | ^~ 2021-07-15T22:09:03,721 include/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,721 228 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,721 | ^~~~~ 2021-07-15T22:09:03,722 include/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,722 240 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,722 | ^~ 2021-07-15T22:09:03,722 include/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,723 240 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,723 | ^~~~~ 2021-07-15T22:09:03,723 include/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,723 243 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,723 | ^~ 2021-07-15T22:09:03,724 include/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,724 243 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,724 | ^~~~~ 2021-07-15T22:09:03,724 include/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,724 245 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,725 | ^~ 2021-07-15T22:09:03,725 include/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,725 245 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,725 | ^~~~~ 2021-07-15T22:09:03,726 include/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,726 257 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,726 | ^~ 2021-07-15T22:09:03,726 include/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,727 257 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,727 | ^~~~~ 2021-07-15T22:09:03,727 include/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,727 260 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,728 | ^~ 2021-07-15T22:09:03,728 include/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,728 260 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,728 | ^~~~~ 2021-07-15T22:09:03,728 include/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,729 262 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,729 | ^~ 2021-07-15T22:09:03,729 include/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,729 262 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,730 | ^~~~~ 2021-07-15T22:09:03,730 include/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,730 274 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,730 | ^~ 2021-07-15T22:09:03,730 include/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,731 274 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,731 | ^~~~~ 2021-07-15T22:09:03,731 include/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,731 277 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,731 | ^~ 2021-07-15T22:09:03,732 include/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,732 277 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,732 | ^~~~~ 2021-07-15T22:09:03,732 include/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,732 279 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,733 | ^~ 2021-07-15T22:09:03,733 include/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,733 279 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,733 | ^~~~~ 2021-07-15T22:09:03,733 include/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,733 291 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,734 | ^~ 2021-07-15T22:09:03,734 include/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,734 291 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,734 | ^~~~~ 2021-07-15T22:09:03,734 include/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,735 294 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,735 | ^~ 2021-07-15T22:09:03,735 include/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,735 294 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,735 | ^~~~~ 2021-07-15T22:09:03,736 include/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,736 296 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,736 | ^~ 2021-07-15T22:09:03,736 include/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,736 296 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,737 | ^~~~~ 2021-07-15T22:09:03,737 include/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,737 298 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,737 | ^~ 2021-07-15T22:09:03,737 include/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,737 298 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,738 | ^~~~~ 2021-07-15T22:09:03,738 include/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,738 310 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,738 | ^~ 2021-07-15T22:09:03,738 include/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,739 310 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,739 | ^~~~~ 2021-07-15T22:09:03,739 include/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,739 313 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,739 | ^~ 2021-07-15T22:09:03,739 include/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,740 313 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,740 | ^~~~~ 2021-07-15T22:09:03,740 include/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,740 315 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,740 | ^~ 2021-07-15T22:09:03,740 include/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,741 315 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,741 | ^~~~~ 2021-07-15T22:09:03,741 include/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,741 317 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,741 | ^~ 2021-07-15T22:09:03,741 include/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,742 317 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,742 | ^~~~~ 2021-07-15T22:09:03,742 include/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,742 329 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,742 | ^~ 2021-07-15T22:09:03,743 include/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,743 329 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,743 | ^~~~~ 2021-07-15T22:09:03,743 include/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,743 332 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,743 | ^~ 2021-07-15T22:09:03,744 include/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,744 332 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,744 | ^~~~~ 2021-07-15T22:09:03,744 include/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,744 334 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,745 | ^~ 2021-07-15T22:09:03,745 include/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,745 334 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,745 | ^~~~~ 2021-07-15T22:09:03,745 include/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,746 336 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,746 | ^~ 2021-07-15T22:09:03,746 include/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,746 336 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,746 | ^~~~~ 2021-07-15T22:09:03,746 include/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,747 348 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,747 | ^~ 2021-07-15T22:09:03,747 include/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,747 348 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,747 | ^~~~~ 2021-07-15T22:09:03,747 include/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,748 351 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,748 | ^~ 2021-07-15T22:09:03,748 include/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,748 351 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,748 | ^~~~~ 2021-07-15T22:09:03,749 include/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,749 353 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,749 | ^~ 2021-07-15T22:09:03,749 include/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,749 353 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,749 | ^~~~~ 2021-07-15T22:09:03,750 include/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,750 355 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,750 | ^~ 2021-07-15T22:09:03,750 include/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,750 355 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,751 | ^~~~~ 2021-07-15T22:09:03,751 include/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,751 367 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,751 | ^~ 2021-07-15T22:09:03,751 include/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,752 367 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,752 | ^~~~~ 2021-07-15T22:09:03,752 include/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,752 370 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,752 | ^~ 2021-07-15T22:09:03,753 include/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,753 370 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,753 | ^~~~~ 2021-07-15T22:09:03,753 include/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,753 372 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,754 | ^~ 2021-07-15T22:09:03,754 include/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,754 372 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,754 | ^~~~~ 2021-07-15T22:09:03,754 include/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,755 374 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,755 | ^~ 2021-07-15T22:09:03,755 include/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,755 374 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,756 | ^~~~~ 2021-07-15T22:09:03,756 include/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,756 385 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,756 | ^~ 2021-07-15T22:09:03,756 include/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,757 385 | if (val <= 7) return 7; break; 2021-07-15T22:09:03,757 | ^~~~~ 2021-07-15T22:09:03,757 include/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,757 388 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,757 | ^~ 2021-07-15T22:09:03,758 include/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,758 388 | if (val <= 6) return 6; break; 2021-07-15T22:09:03,758 | ^~~~~ 2021-07-15T22:09:03,758 include/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,759 390 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,759 | ^~ 2021-07-15T22:09:03,759 include/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,759 390 | if (val <= 5) return 5; break; 2021-07-15T22:09:03,759 | ^~~~~ 2021-07-15T22:09:03,760 include/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,760 392 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,760 | ^~ 2021-07-15T22:09:03,760 include/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,760 392 | if (val <= 4) return 4; break; 2021-07-15T22:09:03,761 | ^~~~~ 2021-07-15T22:09:03,761 include/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:09:03,761 394 | if (val <= 3) return 3; break; 2021-07-15T22:09:03,761 | ^~ 2021-07-15T22:09:03,761 include/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:09:03,762 394 | if (val <= 3) return 3; break; 2021-07-15T22:09:03,762 | ^~~~~ 2021-07-15T22:09:03,762 include/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: 2021-07-15T22:09:03,762 include/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:03,762 416 | if (val > impval) { 2021-07-15T22:09:03,762 | ~~~~^~~~~~~~ 2021-07-15T22:09:04,198 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadV3000Block(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*, bool)’: 2021-07-15T22:09:04,199 ./src/formats/mdlformat.cpp:1273:85: warning: unused parameter ‘DoMany’ [-Wunused-parameter] 2021-07-15T22:09:04,199 1273 | bool MDLFormat::ReadV3000Block(istream& ifs, OBMol& mol, OBConversion* pConv,bool DoMany) 2021-07-15T22:09:04,199 | ~~~~~^~~~~~ 2021-07-15T22:09:04,219 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:09:04,220 ./src/formats/mdlformat.cpp:1341:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 2021-07-15T22:09:04,220 1341 | bool chiralWatch=false; 2021-07-15T22:09:04,220 | ^~~~~~~~~~~ 2021-07-15T22:09:04,220 ./src/formats/mdlformat.cpp:1338:72: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:09:04,221 1338 | bool MDLFormat::ReadAtomBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:09:04,221 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:09:04,225 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadBondBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:09:04,225 ./src/formats/mdlformat.cpp:1422:72: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:09:04,225 1422 | bool MDLFormat::ReadBondBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:09:04,226 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:09:04,227 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadUnimplementedBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*, std::string&)’: 2021-07-15T22:09:04,227 ./src/formats/mdlformat.cpp:1481:62: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:09:04,227 1481 | bool MDLFormat::ReadUnimplementedBlock(istream& ifs,OBMol& mol, OBConversion* pConv, string& blockname) 2021-07-15T22:09:04,228 | ~~~~~~~^~~ 2021-07-15T22:09:04,228 ./src/formats/mdlformat.cpp:1481:81: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:09:04,228 1481 | bool MDLFormat::ReadUnimplementedBlock(istream& ifs,OBMol& mol, OBConversion* pConv, string& blockname) 2021-07-15T22:09:04,228 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:09:04,229 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadRGroupBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:09:04,230 ./src/formats/mdlformat.cpp:1497:55: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:09:04,230 1497 | bool MDLFormat::ReadRGroupBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:09:04,230 | ~~~~~~~^~~ 2021-07-15T22:09:04,230 ./src/formats/mdlformat.cpp:1497:74: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:09:04,231 1497 | bool MDLFormat::ReadRGroupBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:09:04,231 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:09:04,259 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::WriteV3000(std::ostream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:09:04,260 ./src/formats/mdlformat.cpp:1514:69: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:09:04,260 1514 | bool MDLFormat::WriteV3000(ostream& ofs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:09:04,260 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:09:04,369 ./src/formats/mdlformat.cpp: In member function ‘void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)’: 2021-07-15T22:09:04,369 ./src/formats/mdlformat.cpp:1957:45: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:09:04,369 1957 | unsigned int second = (a1_b2 == NULL) ? OBStereo::ImplicitRef : a1_b2->GetNbrAtom(a1)->GetId(); 2021-07-15T22:09:04,369 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:04,370 ./src/formats/mdlformat.cpp:1958:45: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:09:04,370 1958 | unsigned int fourth = (a2_b2 == NULL) ? OBStereo::ImplicitRef : a2_b2->GetNbrAtom(a2)->GetId(); 2021-07-15T22:09:04,370 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:06,741 ./src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:06,742 ./src/formats/mdlformat.cpp:527:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:09:06,742 527 | flag |= OBBond::CisOrTrans; 2021-07-15T22:09:06,742 | ~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:06,742 ./src/formats/mdlformat.cpp:528:15: note: here 2021-07-15T22:09:06,743 528 | case 4: 2021-07-15T22:09:06,743 | ^~~~ 2021-07-15T22:09:11,632 ./src/formats/mdlformat.cpp: In member function ‘std::string OpenBabel::MDLFormat::GetTimeDate()’: 2021-07-15T22:09:11,632 ./src/formats/mdlformat.cpp:1648:31: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 7 [-Wformat-truncation=] 2021-07-15T22:09:11,632 1648 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, 2021-07-15T22:09:11,633 | ^~~~ 2021-07-15T22:09:11,633 ./src/formats/mdlformat.cpp:1648:22: note: directive argument in the range [-2147483648, 2147483547] 2021-07-15T22:09:11,633 1648 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, 2021-07-15T22:09:11,633 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:11,633 In file included from /usr/include/stdio.h:867, 2021-07-15T22:09:11,634 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:09:11,634 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:09:11,634 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:09:11,634 from /usr/include/c++/10/string:55, 2021-07-15T22:09:11,634 from /usr/include/c++/10/bits/locale_classes.h:40, 2021-07-15T22:09:11,635 from /usr/include/c++/10/bits/ios_base.h:41, 2021-07-15T22:09:11,635 from /usr/include/c++/10/iomanip:40, 2021-07-15T22:09:11,635 from ./src/formats/mdlformat.cpp:23: 2021-07-15T22:09:11,635 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 2021-07-15T22:09:11,636 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:09:11,636 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:11,636 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:09:11,636 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:14,540 ./src/formats/mdlformat.cpp: In member function ‘void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)’: 2021-07-15T22:09:14,540 ./src/formats/mdlformat.cpp:1967:58: warning: ‘a2_stereo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:09:14,540 1967 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) 2021-07-15T22:09:14,540 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:14,541 ./src/formats/mdlformat.cpp:1967:21: warning: ‘a1_stereo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:09:14,541 1967 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) 2021-07-15T22:09:14,541 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:25,327 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:25,328 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o /tmp/ccwfq1jc.s 2021-07-15T22:09:25,334 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:27,619 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:27,619 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:27,619 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:27,627 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mmcifformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:27,638 Using built-in specs. 2021-07-15T22:09:27,640 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:27,640 Target: arm-linux-gnueabihf 2021-07-15T22:09:27,640 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:27,640 Thread model: posix 2021-07-15T22:09:27,640 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:27,641 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:27,641 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:27,641 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mmcifformat.cpp -quiet -dumpbase mmcifformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctjW9sU.s 2021-07-15T22:09:27,654 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:27,654 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:27,655 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:27,657 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:27,657 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:27,657 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:27,657 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:27,657 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:27,658 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:27,658 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:27,658 #include "..." search starts here: 2021-07-15T22:09:27,658 #include <...> search starts here: 2021-07-15T22:09:27,658 /usr/include/eigen3 2021-07-15T22:09:27,658 include 2021-07-15T22:09:27,659 /usr/include/python3.9 2021-07-15T22:09:27,659 /usr/include/c++/10 2021-07-15T22:09:27,659 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:27,659 /usr/include/c++/10/backward 2021-07-15T22:09:27,659 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:27,659 /usr/local/include 2021-07-15T22:09:27,660 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:27,660 /usr/include 2021-07-15T22:09:27,660 End of search list. 2021-07-15T22:09:27,660 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:27,660 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:27,661 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:27,686 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:29,275 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:29,276 from include/openbabel/mol.h:43, 2021-07-15T22:09:29,276 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:29,276 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:09:29,276 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:29,276 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:29,276 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:29,277 | ^ 2021-07-15T22:09:29,277 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:29,277 37 | # define UNUSED(x) x 2021-07-15T22:09:29,277 | ^ 2021-07-15T22:09:30,073 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:30,073 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:30,073 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:09:30,073 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:30,073 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:30,073 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:30,074 | ^ 2021-07-15T22:09:30,074 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:30,074 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:30,074 | ^~~~~~~~ 2021-07-15T22:09:30,079 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:30,079 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:30,079 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:30,079 | ^ 2021-07-15T22:09:30,080 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:30,080 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:30,080 | ^~~~~~~~ 2021-07-15T22:09:30,099 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:30,099 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:30,099 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:30,100 | ^ 2021-07-15T22:09:30,100 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:30,100 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:30,100 | ^~~~~~~~ 2021-07-15T22:09:30,106 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:30,106 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:30,106 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:09:30,106 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:30,107 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:30,107 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:30,107 | ^ 2021-07-15T22:09:30,107 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:30,107 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:30,108 | ^~~~~~~~ 2021-07-15T22:09:32,497 ./src/formats/mmcifformat.cpp: In member function ‘bool OpenBabel::CIFLexer::next_token(OpenBabel::CIFLexer::Token&)’: 2021-07-15T22:09:32,497 ./src/formats/mmcifformat.cpp:394:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:09:32,497 394 | if (last_char == '\n') 2021-07-15T22:09:32,498 | ^~ 2021-07-15T22:09:32,498 ./src/formats/mmcifformat.cpp:421:6: note: here 2021-07-15T22:09:32,498 421 | default: // reading an un-quoted text string 2021-07-15T22:09:32,498 | ^~~~~~~ 2021-07-15T22:09:32,507 ./src/formats/mmcifformat.cpp: In member function ‘virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:32,507 ./src/formats/mmcifformat.cpp:638:16: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:09:32,507 638 | if(string::npos != token.as_text.find_first_of("0123456789")) 2021-07-15T22:09:32,507 | ^~ 2021-07-15T22:09:32,508 ./src/formats/mmcifformat.cpp:640:14: note: here 2021-07-15T22:09:32,508 640 | case CIFTagID::_atom_site_type_symbol: 2021-07-15T22:09:32,508 | ^~~~ 2021-07-15T22:09:41,933 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:41,934 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o /tmp/cctjW9sU.s 2021-07-15T22:09:41,939 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:42,939 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:42,940 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:42,940 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:42,945 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mmodformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:42,955 Using built-in specs. 2021-07-15T22:09:42,957 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:42,957 Target: arm-linux-gnueabihf 2021-07-15T22:09:42,958 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:42,958 Thread model: posix 2021-07-15T22:09:42,958 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:42,958 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:42,960 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:42,963 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mmodformat.cpp -quiet -dumpbase mmodformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccyEQkx8.s 2021-07-15T22:09:42,977 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:42,977 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:42,977 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:42,978 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:42,978 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:42,979 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:42,979 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:42,979 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:42,979 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:42,980 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:42,980 #include "..." search starts here: 2021-07-15T22:09:42,980 #include <...> search starts here: 2021-07-15T22:09:42,980 /usr/include/eigen3 2021-07-15T22:09:42,980 include 2021-07-15T22:09:42,981 /usr/include/python3.9 2021-07-15T22:09:42,981 /usr/include/c++/10 2021-07-15T22:09:42,981 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:42,981 /usr/include/c++/10/backward 2021-07-15T22:09:42,981 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:42,981 /usr/local/include 2021-07-15T22:09:42,982 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:42,982 /usr/include 2021-07-15T22:09:42,982 End of search list. 2021-07-15T22:09:42,982 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:42,983 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:42,983 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:42,997 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:44,597 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:44,597 from include/openbabel/mol.h:43, 2021-07-15T22:09:44,597 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:44,597 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:09:44,598 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:44,598 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:44,598 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:44,598 | ^ 2021-07-15T22:09:44,598 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:44,599 37 | # define UNUSED(x) x 2021-07-15T22:09:44,599 | ^ 2021-07-15T22:09:45,396 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:45,396 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:45,397 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:09:45,397 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:45,397 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:45,397 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:45,397 | ^ 2021-07-15T22:09:45,398 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:45,398 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:45,398 | ^~~~~~~~ 2021-07-15T22:09:45,401 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:45,401 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:45,401 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:45,401 | ^ 2021-07-15T22:09:45,402 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:45,402 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:45,402 | ^~~~~~~~ 2021-07-15T22:09:45,420 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:45,420 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:45,420 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:45,420 | ^ 2021-07-15T22:09:45,421 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:45,421 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:45,421 | ^~~~~~~~ 2021-07-15T22:09:45,425 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:45,426 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:45,426 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:09:45,426 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:45,426 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:45,427 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:45,427 | ^ 2021-07-15T22:09:45,427 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:45,427 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:45,428 | ^~~~~~~~ 2021-07-15T22:09:49,500 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:49,501 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o /tmp/ccyEQkx8.s 2021-07-15T22:09:49,506 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:49,822 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:49,822 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:49,822 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:49,824 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mol2format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mol2format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:49,835 Using built-in specs. 2021-07-15T22:09:49,837 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:49,837 Target: arm-linux-gnueabihf 2021-07-15T22:09:49,837 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:49,838 Thread model: posix 2021-07-15T22:09:49,838 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:49,838 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:49,839 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:49,842 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mol2format.cpp -quiet -dumpbase mol2format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mol2format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccOqadAn.s 2021-07-15T22:09:49,855 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:49,855 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:49,856 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:49,856 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:49,857 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:49,857 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:49,857 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:49,857 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:49,857 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:49,858 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:49,858 #include "..." search starts here: 2021-07-15T22:09:49,858 #include <...> search starts here: 2021-07-15T22:09:49,858 /usr/include/eigen3 2021-07-15T22:09:49,858 include 2021-07-15T22:09:49,859 /usr/include/python3.9 2021-07-15T22:09:49,859 /usr/include/c++/10 2021-07-15T22:09:49,859 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:49,859 /usr/include/c++/10/backward 2021-07-15T22:09:49,859 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:49,859 /usr/local/include 2021-07-15T22:09:49,860 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:49,860 /usr/include 2021-07-15T22:09:49,860 End of search list. 2021-07-15T22:09:49,860 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:49,860 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:49,861 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:49,874 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:51,462 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:51,463 from include/openbabel/mol.h:43, 2021-07-15T22:09:51,463 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:51,463 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:09:51,463 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:51,464 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:51,464 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:51,464 | ^ 2021-07-15T22:09:51,464 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:51,465 37 | # define UNUSED(x) x 2021-07-15T22:09:51,465 | ^ 2021-07-15T22:09:52,261 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:52,261 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:52,261 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:09:52,261 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:52,262 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:52,262 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:52,262 | ^ 2021-07-15T22:09:52,262 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:52,263 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:52,263 | ^~~~~~~~ 2021-07-15T22:09:52,265 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:52,266 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:52,266 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:52,266 | ^ 2021-07-15T22:09:52,266 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:52,267 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:52,267 | ^~~~~~~~ 2021-07-15T22:09:52,284 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:52,285 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:52,285 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:52,285 | ^ 2021-07-15T22:09:52,286 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:52,286 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:52,286 | ^~~~~~~~ 2021-07-15T22:09:52,295 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:52,295 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:52,296 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:09:52,296 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:52,296 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:52,296 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:52,296 | ^ 2021-07-15T22:09:52,296 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:52,296 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:52,297 | ^~~~~~~~ 2021-07-15T22:09:52,621 ./src/formats/mol2format.cpp: In member function ‘virtual const char* OpenBabel::MOL2Format::Description()’: 2021-07-15T22:09:52,621 ./src/formats/mol2format.cpp:49:9: warning: statement has no effect [-Wunused-value] 2021-07-15T22:09:52,622 49 | " c Write UCSF Dock scores saved in comments preceeding molecules\n\n"; 2021-07-15T22:09:52,622 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:52,655 ./src/formats/mol2format.cpp: In member function ‘virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:52,655 ./src/formats/mol2format.cpp:391:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,656 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) 2021-07-15T22:09:52,656 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:09:52,656 ./src/formats/mol2format.cpp:391:87: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,656 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) 2021-07-15T22:09:52,657 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:09:52,657 ./src/formats/mol2format.cpp:394:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,657 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) 2021-07-15T22:09:52,658 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:09:52,658 ./src/formats/mol2format.cpp:394:92: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,658 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) 2021-07-15T22:09:52,658 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:09:52,663 ./src/formats/mol2format.cpp:476:99: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,663 476 | if (n_h_bonded < min_n_h_bonded || (n_h_bonded == min_n_h_bonded && partner->GetIdx() < min_idx)) { 2021-07-15T22:09:52,663 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:09:52,665 ./src/formats/mol2format.cpp:499:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:52,665 499 | if (partner->GetIdx() == min_idx) { 2021-07-15T22:09:52,665 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:09:52,702 ./src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:09:52,702 ./src/formats/mol2format.cpp:727:10: warning: unused variable ‘ch’ [-Wunused-variable] 2021-07-15T22:09:52,702 727 | char ch = ifs.peek(); 2021-07-15T22:09:52,702 | ^~ 2021-07-15T22:09:55,787 ./src/formats/mol2format.cpp: In member function ‘virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:55,787 ./src/formats/mol2format.cpp:677:40: warning: ‘%-6s’ directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=] 2021-07-15T22:09:55,787 677 | snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f", 2021-07-15T22:09:55,787 | ^~~~ 2021-07-15T22:09:55,787 678 | atom->GetIdx(),label, 2021-07-15T22:09:55,787 | ~~~~~ 2021-07-15T22:09:55,788 In file included from /usr/include/stdio.h:867, 2021-07-15T22:09:55,789 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:09:55,789 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:09:55,789 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:09:55,789 from /usr/include/c++/10/string:55, 2021-07-15T22:09:55,789 from include/openbabel/mol.h:36, 2021-07-15T22:09:55,789 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:55,790 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:09:55,790 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 77 or more bytes (assuming 32838) into a destination of size 32768 2021-07-15T22:09:55,790 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:09:55,790 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:55,790 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:09:55,790 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:58,412 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:58,412 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mol2format.o /tmp/ccOqadAn.s 2021-07-15T22:09:58,417 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:58,898 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:58,898 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:58,898 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:58,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/moldenformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:58,912 Using built-in specs. 2021-07-15T22:09:58,914 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:58,914 Target: arm-linux-gnueabihf 2021-07-15T22:09:58,915 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:58,915 Thread model: posix 2021-07-15T22:09:58,916 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:58,916 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:58,917 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:58,917 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/moldenformat.cpp -quiet -dumpbase moldenformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccclwikB.s 2021-07-15T22:09:58,927 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:58,928 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:58,929 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:58,929 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:58,930 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:58,930 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:58,930 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:58,931 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:58,931 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:58,931 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:58,932 #include "..." search starts here: 2021-07-15T22:09:58,932 #include <...> search starts here: 2021-07-15T22:09:58,933 /usr/include/eigen3 2021-07-15T22:09:58,933 include 2021-07-15T22:09:58,933 /usr/include/python3.9 2021-07-15T22:09:58,933 /usr/include/c++/10 2021-07-15T22:09:58,934 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:58,934 /usr/include/c++/10/backward 2021-07-15T22:09:58,934 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:58,935 /usr/local/include 2021-07-15T22:09:58,935 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:58,936 /usr/include 2021-07-15T22:09:58,936 End of search list. 2021-07-15T22:09:58,936 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:58,937 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:58,938 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:58,946 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:00,708 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:00,709 from include/openbabel/mol.h:43, 2021-07-15T22:10:00,709 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:00,710 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:10:00,710 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:00,711 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:00,711 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:00,711 | ^ 2021-07-15T22:10:00,712 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:00,712 37 | # define UNUSED(x) x 2021-07-15T22:10:00,712 | ^ 2021-07-15T22:10:01,415 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:01,415 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:01,415 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:10:01,415 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:01,416 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:01,416 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:01,416 | ^ 2021-07-15T22:10:01,416 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:01,416 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:01,416 | ^~~~~~~~ 2021-07-15T22:10:01,416 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:01,417 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:01,417 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:01,417 | ^ 2021-07-15T22:10:01,417 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:01,417 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:01,417 | ^~~~~~~~ 2021-07-15T22:10:01,437 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:01,438 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:01,438 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:01,438 | ^ 2021-07-15T22:10:01,438 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:01,439 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:01,439 | ^~~~~~~~ 2021-07-15T22:10:01,444 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:01,445 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:01,445 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:10:01,445 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:01,445 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:01,445 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:01,446 | ^ 2021-07-15T22:10:01,446 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:01,446 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:01,446 | ^~~~~~~~ 2021-07-15T22:10:01,674 ./src/formats/moldenformat.cpp: In member function ‘virtual int OpenBabel::OBMoldenFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:10:01,674 ./src/formats/moldenformat.cpp:85:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:10:01,675 85 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:10:01,675 | ~~~~^ 2021-07-15T22:10:01,675 ./src/formats/moldenformat.cpp:85:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:10:01,675 85 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:10:01,676 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:10:01,694 ./src/formats/moldenformat.cpp: In member function ‘virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:01,695 ./src/formats/moldenformat.cpp:171:48: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:10:01,695 171 | if (sscanf(lineBuffer.c_str(), "%d", &natoms) == 0 || !natoms) { 2021-07-15T22:10:01,695 | ~^ ~~~~~~~ 2021-07-15T22:10:01,695 | | | 2021-07-15T22:10:01,695 | | unsigned int* 2021-07-15T22:10:01,696 | int* 2021-07-15T22:10:01,696 | %d 2021-07-15T22:10:04,868 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:04,868 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:10:04,868 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:04,869 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:04,869 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:04,869 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:04,922 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:04,923 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:04,994 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:04,994 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:06,562 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:10:06,562 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:10:06,562 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:06,562 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:06,563 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:06,563 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:06,564 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:06,564 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:06,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:06,568 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:06,569 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:06,569 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:06,572 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:06,572 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:06,572 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:06,579 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:06,579 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:10:06,579 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:06,580 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:06,580 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:08,908 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:08,908 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o /tmp/ccclwikB.s 2021-07-15T22:10:08,915 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:09,682 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:09,682 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:09,683 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:09,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/molproformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/molproformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:09,696 Using built-in specs. 2021-07-15T22:10:09,697 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:09,698 Target: arm-linux-gnueabihf 2021-07-15T22:10:09,698 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:09,698 Thread model: posix 2021-07-15T22:10:09,698 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:09,699 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:09,699 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:09,700 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/molproformat.cpp -quiet -dumpbase molproformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/molproformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccytsNK8.s 2021-07-15T22:10:09,712 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:09,712 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:09,713 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:09,713 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:09,713 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:09,714 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:09,714 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:09,714 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:09,715 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:09,715 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:09,715 #include "..." search starts here: 2021-07-15T22:10:09,716 #include <...> search starts here: 2021-07-15T22:10:09,716 /usr/include/eigen3 2021-07-15T22:10:09,716 include 2021-07-15T22:10:09,716 /usr/include/python3.9 2021-07-15T22:10:09,717 /usr/include/c++/10 2021-07-15T22:10:09,717 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:09,717 /usr/include/c++/10/backward 2021-07-15T22:10:09,717 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:09,718 /usr/local/include 2021-07-15T22:10:09,718 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:09,718 /usr/include 2021-07-15T22:10:09,718 End of search list. 2021-07-15T22:10:09,719 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:09,719 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:09,719 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:09,731 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:11,303 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:11,303 from include/openbabel/mol.h:43, 2021-07-15T22:10:11,304 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:11,304 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:10:11,305 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:11,305 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:11,305 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:11,306 | ^ 2021-07-15T22:10:11,306 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:11,306 37 | # define UNUSED(x) x 2021-07-15T22:10:11,306 | ^ 2021-07-15T22:10:12,105 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:12,105 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:12,105 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:10:12,105 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:12,106 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:12,106 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:12,106 | ^ 2021-07-15T22:10:12,106 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:12,106 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:12,106 | ^~~~~~~~ 2021-07-15T22:10:12,106 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:12,107 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:12,107 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:12,107 | ^ 2021-07-15T22:10:12,107 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:12,107 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:12,107 | ^~~~~~~~ 2021-07-15T22:10:12,123 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:12,124 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:12,124 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:12,124 | ^ 2021-07-15T22:10:12,124 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:12,124 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:12,125 | ^~~~~~~~ 2021-07-15T22:10:12,130 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:12,131 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:12,131 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:10:12,131 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:12,131 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:12,131 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:12,131 | ^ 2021-07-15T22:10:12,132 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:12,132 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:12,132 | ^~~~~~~~ 2021-07-15T22:10:15,605 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:15,606 from include/openbabel/mol.h:35, 2021-07-15T22:10:15,606 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:15,606 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:10:15,606 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:15,606 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:15,606 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:15,606 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:15,650 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:15,651 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:15,855 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:15,855 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:16,441 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::MolproOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:16,441 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,441 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,441 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,442 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,442 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,443 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,444 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,444 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,446 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,446 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,446 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,447 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,447 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,448 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,449 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,449 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,449 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,451 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,451 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:16,451 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:16,453 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:10:16,453 from include/openbabel/mol.h:35, 2021-07-15T22:10:16,453 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:16,453 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:10:16,454 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,454 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:16,454 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:16,454 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:16,455 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:16,455 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:17,783 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:17,783 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/molproformat.o /tmp/ccytsNK8.s 2021-07-15T22:10:17,788 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:18,282 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:18,282 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:18,282 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:18,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/molreport.cpp -o build/temp.linux-armv7l-3.9/./src/formats/molreport.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:18,296 Using built-in specs. 2021-07-15T22:10:18,298 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:18,298 Target: arm-linux-gnueabihf 2021-07-15T22:10:18,298 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:18,299 Thread model: posix 2021-07-15T22:10:18,299 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:18,299 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:18,300 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:18,303 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/molreport.cpp -quiet -dumpbase molreport.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/molreport.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc5wUgnv.s 2021-07-15T22:10:18,316 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:18,317 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:18,317 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:18,318 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:18,319 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:18,319 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:18,319 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:18,320 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:18,320 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:18,320 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:18,320 #include "..." search starts here: 2021-07-15T22:10:18,321 #include <...> search starts here: 2021-07-15T22:10:18,321 /usr/include/eigen3 2021-07-15T22:10:18,321 include 2021-07-15T22:10:18,321 /usr/include/python3.9 2021-07-15T22:10:18,322 /usr/include/c++/10 2021-07-15T22:10:18,322 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:18,322 /usr/include/c++/10/backward 2021-07-15T22:10:18,322 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:18,323 /usr/local/include 2021-07-15T22:10:18,323 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:18,323 /usr/include 2021-07-15T22:10:18,323 End of search list. 2021-07-15T22:10:18,325 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:18,325 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:18,326 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:18,340 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:19,937 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:19,937 from include/openbabel/mol.h:43, 2021-07-15T22:10:19,937 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:19,937 from ./src/formats/molreport.cpp:21: 2021-07-15T22:10:19,937 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:19,938 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:19,938 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:19,938 | ^ 2021-07-15T22:10:19,938 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:19,938 37 | # define UNUSED(x) x 2021-07-15T22:10:19,938 | ^ 2021-07-15T22:10:20,736 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:20,736 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:20,736 from ./src/formats/molreport.cpp:21: 2021-07-15T22:10:20,736 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:20,737 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:20,737 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:20,737 | ^ 2021-07-15T22:10:20,737 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:20,737 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:20,738 | ^~~~~~~~ 2021-07-15T22:10:20,742 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:20,742 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:20,742 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:20,742 | ^ 2021-07-15T22:10:20,743 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:20,743 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:20,743 | ^~~~~~~~ 2021-07-15T22:10:20,762 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:20,763 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:20,763 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:20,763 | ^ 2021-07-15T22:10:20,763 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:20,763 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:20,764 | ^~~~~~~~ 2021-07-15T22:10:20,769 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:20,769 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:20,770 from ./src/formats/molreport.cpp:21: 2021-07-15T22:10:20,770 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:20,770 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:20,770 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:20,770 | ^ 2021-07-15T22:10:20,770 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:20,771 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:20,771 | ^~~~~~~~ 2021-07-15T22:10:23,473 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,475 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/molreport.o /tmp/cc5wUgnv.s 2021-07-15T22:10:23,480 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:23,678 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:23,678 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:23,678 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mopacformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:23,692 Using built-in specs. 2021-07-15T22:10:23,694 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:23,694 Target: arm-linux-gnueabihf 2021-07-15T22:10:23,694 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:23,694 Thread model: posix 2021-07-15T22:10:23,694 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:23,695 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:23,695 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,695 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mopacformat.cpp -quiet -dumpbase mopacformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccx5gHPJ.s 2021-07-15T22:10:23,713 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:23,713 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:23,713 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:23,714 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:23,714 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:23,714 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:23,715 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:23,715 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:23,715 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:23,715 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:23,715 #include "..." search starts here: 2021-07-15T22:10:23,716 #include <...> search starts here: 2021-07-15T22:10:23,716 /usr/include/eigen3 2021-07-15T22:10:23,716 include 2021-07-15T22:10:23,716 /usr/include/python3.9 2021-07-15T22:10:23,717 /usr/include/c++/10 2021-07-15T22:10:23,717 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:23,717 /usr/include/c++/10/backward 2021-07-15T22:10:23,717 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:23,717 /usr/local/include 2021-07-15T22:10:23,717 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:23,718 /usr/include 2021-07-15T22:10:23,718 End of search list. 2021-07-15T22:10:23,718 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:23,718 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:23,718 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:23,737 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:25,327 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:25,328 from include/openbabel/mol.h:43, 2021-07-15T22:10:25,328 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:25,328 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:25,328 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:25,328 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:25,328 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:25,328 | ^ 2021-07-15T22:10:25,329 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:25,329 37 | # define UNUSED(x) x 2021-07-15T22:10:25,329 | ^ 2021-07-15T22:10:26,120 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:26,120 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:26,120 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:26,121 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:26,121 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:26,121 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:26,121 | ^ 2021-07-15T22:10:26,121 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:26,122 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:26,122 | ^~~~~~~~ 2021-07-15T22:10:26,126 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:26,126 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:26,127 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:26,127 | ^ 2021-07-15T22:10:26,127 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:26,127 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:26,127 | ^~~~~~~~ 2021-07-15T22:10:26,146 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:26,147 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:26,147 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:26,147 | ^ 2021-07-15T22:10:26,147 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:26,147 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:26,148 | ^~~~~~~~ 2021-07-15T22:10:26,153 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:26,153 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:26,154 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:26,154 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:26,154 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:26,154 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:26,154 | ^ 2021-07-15T22:10:26,155 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:26,155 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:26,155 | ^~~~~~~~ 2021-07-15T22:10:26,547 ./src/formats/mopacformat.cpp: In member function ‘virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:26,547 ./src/formats/mopacformat.cpp:642:19: warning: variable ‘isotopeMass’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:10:26,547 642 | double x,y,z, isotopeMass; 2021-07-15T22:10:26,547 | ^~~~~~~~~~~ 2021-07-15T22:10:31,508 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:31,508 from include/openbabel/mol.h:35, 2021-07-15T22:10:31,508 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:31,508 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:31,508 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:31,509 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:31,509 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:31,509 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:31,562 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:31,563 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:32,847 In file included from include/openbabel/atom.h:35, 2021-07-15T22:10:32,847 from include/openbabel/mol.h:43, 2021-07-15T22:10:32,848 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:32,848 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:32,848 include/openbabel/math/vector3.h: In member function ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:32,848 include/openbabel/math/vector3.h:91:11: warning: ‘y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:32,848 91 | _vy = inY; 2021-07-15T22:10:32,848 | ~~~~^~~~~ 2021-07-15T22:10:32,849 ./src/formats/mopacformat.cpp:73:14: note: ‘y’ was declared here 2021-07-15T22:10:32,849 73 | double x,y,z; 2021-07-15T22:10:32,849 | ^ 2021-07-15T22:10:32,850 In file included from include/openbabel/atom.h:35, 2021-07-15T22:10:32,850 from include/openbabel/mol.h:43, 2021-07-15T22:10:32,851 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:32,851 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:32,851 include/openbabel/math/vector3.h:90:11: warning: ‘x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:32,851 90 | _vx = inX; 2021-07-15T22:10:32,851 | ~~~~^~~~~ 2021-07-15T22:10:32,851 ./src/formats/mopacformat.cpp:73:12: note: ‘x’ was declared here 2021-07-15T22:10:32,852 73 | double x,y,z; 2021-07-15T22:10:32,852 | ^ 2021-07-15T22:10:32,908 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:32,908 from include/openbabel/mol.h:35, 2021-07-15T22:10:32,908 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:32,909 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:10:32,909 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,909 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,909 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,912 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,912 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,912 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,914 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,915 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,915 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,920 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,920 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,921 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,923 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,923 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,923 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,925 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,925 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,925 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,926 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,927 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,927 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,929 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,929 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,929 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:32,931 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:32,931 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:32,931 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:36,067 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,068 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o /tmp/ccx5gHPJ.s 2021-07-15T22:10:36,078 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:36,954 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:36,954 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:36,955 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,958 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mpdformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:36,967 Using built-in specs. 2021-07-15T22:10:36,968 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:36,969 Target: arm-linux-gnueabihf 2021-07-15T22:10:36,969 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:36,970 Thread model: posix 2021-07-15T22:10:36,970 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:36,970 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:36,971 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,971 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mpdformat.cpp -quiet -dumpbase mpdformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc9EqxTW.s 2021-07-15T22:10:36,984 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:36,984 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:36,985 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:36,985 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:36,986 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:36,986 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:36,986 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:36,986 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:36,987 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:36,987 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:36,987 #include "..." search starts here: 2021-07-15T22:10:36,987 #include <...> search starts here: 2021-07-15T22:10:36,988 /usr/include/eigen3 2021-07-15T22:10:36,988 include 2021-07-15T22:10:36,988 /usr/include/python3.9 2021-07-15T22:10:36,988 /usr/include/c++/10 2021-07-15T22:10:36,989 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:36,989 /usr/include/c++/10/backward 2021-07-15T22:10:36,989 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:36,989 /usr/local/include 2021-07-15T22:10:36,990 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:36,990 /usr/include 2021-07-15T22:10:36,990 End of search list. 2021-07-15T22:10:36,990 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:36,990 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:36,991 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:37,007 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:38,924 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:38,924 from include/openbabel/mol.h:43, 2021-07-15T22:10:38,924 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:38,925 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:10:38,925 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:38,925 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:38,926 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:38,926 | ^ 2021-07-15T22:10:38,926 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:38,926 37 | # define UNUSED(x) x 2021-07-15T22:10:38,927 | ^ 2021-07-15T22:10:39,908 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:39,908 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:39,908 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:10:39,908 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:39,909 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:39,909 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:39,909 | ^ 2021-07-15T22:10:39,910 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:39,910 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:39,910 | ^~~~~~~~ 2021-07-15T22:10:39,913 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:39,914 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:39,914 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:39,914 | ^ 2021-07-15T22:10:39,914 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:39,915 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:39,915 | ^~~~~~~~ 2021-07-15T22:10:39,937 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:39,938 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:39,938 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:39,938 | ^ 2021-07-15T22:10:39,939 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:39,939 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:39,939 | ^~~~~~~~ 2021-07-15T22:10:39,945 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:39,945 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:39,945 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:10:39,946 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:39,946 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:39,946 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:39,946 | ^ 2021-07-15T22:10:39,947 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:39,947 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:39,947 | ^~~~~~~~ 2021-07-15T22:10:40,382 ./src/formats/mpdformat.cpp: In member function ‘virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:40,383 ./src/formats/mpdformat.cpp:204:42: warning: variable ‘idx_true’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:10:40,383 204 | bool xml_true=false, pre_true=false, idx_true=false; 2021-07-15T22:10:40,383 | ^~~~~~~~ 2021-07-15T22:10:43,663 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:43,663 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o /tmp/cc9EqxTW.s 2021-07-15T22:10:43,670 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:43,960 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:43,961 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:43,961 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:43,963 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mpqcformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:43,972 Using built-in specs. 2021-07-15T22:10:43,973 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:43,973 Target: arm-linux-gnueabihf 2021-07-15T22:10:43,974 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:43,974 Thread model: posix 2021-07-15T22:10:43,974 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:43,974 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:43,975 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:43,978 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mpqcformat.cpp -quiet -dumpbase mpqcformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccvxNdL9.s 2021-07-15T22:10:43,992 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:43,993 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:43,993 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:43,994 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:43,994 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:43,994 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:43,995 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:43,995 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:43,995 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:43,995 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:43,996 #include "..." search starts here: 2021-07-15T22:10:43,996 #include <...> search starts here: 2021-07-15T22:10:43,996 /usr/include/eigen3 2021-07-15T22:10:43,996 include 2021-07-15T22:10:43,996 /usr/include/python3.9 2021-07-15T22:10:43,997 /usr/include/c++/10 2021-07-15T22:10:43,997 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:43,997 /usr/include/c++/10/backward 2021-07-15T22:10:43,997 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:43,997 /usr/local/include 2021-07-15T22:10:43,997 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:43,997 /usr/include 2021-07-15T22:10:43,998 End of search list. 2021-07-15T22:10:43,998 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:43,998 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:43,998 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:44,015 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:45,954 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:45,955 from include/openbabel/mol.h:43, 2021-07-15T22:10:45,955 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:45,955 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:10:45,956 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:45,956 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:45,956 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:45,957 | ^ 2021-07-15T22:10:45,957 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:45,957 37 | # define UNUSED(x) x 2021-07-15T22:10:45,958 | ^ 2021-07-15T22:10:46,747 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:46,747 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:46,747 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:10:46,747 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:46,747 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:46,748 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:46,748 | ^ 2021-07-15T22:10:46,748 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:46,748 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:46,748 | ^~~~~~~~ 2021-07-15T22:10:46,753 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:46,753 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:46,753 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:46,753 | ^ 2021-07-15T22:10:46,754 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:46,754 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:46,754 | ^~~~~~~~ 2021-07-15T22:10:46,773 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:46,773 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:46,773 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:46,774 | ^ 2021-07-15T22:10:46,774 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:46,774 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:46,774 | ^~~~~~~~ 2021-07-15T22:10:46,780 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:46,780 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:46,780 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:10:46,781 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:46,781 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:46,781 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:46,781 | ^ 2021-07-15T22:10:46,781 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:46,781 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:46,782 | ^~~~~~~~ 2021-07-15T22:10:49,722 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:49,722 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o /tmp/ccvxNdL9.s 2021-07-15T22:10:49,727 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:49,946 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:49,946 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:49,946 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:49,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/msiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/msiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:49,957 Using built-in specs. 2021-07-15T22:10:49,958 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:49,959 Target: arm-linux-gnueabihf 2021-07-15T22:10:49,959 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:49,959 Thread model: posix 2021-07-15T22:10:49,960 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:49,960 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:49,960 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:49,961 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/msiformat.cpp -quiet -dumpbase msiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/msiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc9VjuXq.s 2021-07-15T22:10:49,972 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:49,972 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:49,973 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:49,974 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:49,974 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:49,974 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:49,975 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:49,975 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:49,975 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:49,975 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:49,976 #include "..." search starts here: 2021-07-15T22:10:49,976 #include <...> search starts here: 2021-07-15T22:10:49,976 /usr/include/eigen3 2021-07-15T22:10:49,976 include 2021-07-15T22:10:49,977 /usr/include/python3.9 2021-07-15T22:10:49,977 /usr/include/c++/10 2021-07-15T22:10:49,977 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:49,977 /usr/include/c++/10/backward 2021-07-15T22:10:49,978 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:49,978 /usr/local/include 2021-07-15T22:10:49,978 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:49,978 /usr/include 2021-07-15T22:10:49,979 End of search list. 2021-07-15T22:10:49,979 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:49,979 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:49,980 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:49,991 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:51,578 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:51,579 from include/openbabel/mol.h:43, 2021-07-15T22:10:51,579 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:51,579 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:10:51,580 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:51,580 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:51,580 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:51,581 | ^ 2021-07-15T22:10:51,581 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:51,581 37 | # define UNUSED(x) x 2021-07-15T22:10:51,582 | ^ 2021-07-15T22:10:52,375 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:52,375 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:52,375 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:10:52,376 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:52,376 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:52,376 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:52,376 | ^ 2021-07-15T22:10:52,377 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:52,377 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:52,377 | ^~~~~~~~ 2021-07-15T22:10:52,385 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:52,385 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:52,385 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:52,385 | ^ 2021-07-15T22:10:52,386 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:52,386 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:52,386 | ^~~~~~~~ 2021-07-15T22:10:52,398 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:52,398 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:52,399 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:52,399 | ^ 2021-07-15T22:10:52,399 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:52,399 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:52,399 | ^~~~~~~~ 2021-07-15T22:10:52,405 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:52,405 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:52,405 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:10:52,406 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:52,406 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:52,406 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:52,406 | ^ 2021-07-15T22:10:52,406 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:52,407 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:52,407 | ^~~~~~~~ 2021-07-15T22:10:52,748 ./src/formats/msiformat.cpp: In member function ‘virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:52,748 ./src/formats/msiformat.cpp:71:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:10:52,748 71 | const char* title = pConv->GetTitle(); 2021-07-15T22:10:52,749 | ^~~~~ 2021-07-15T22:10:55,178 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:55,178 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:55,178 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:10:55,179 include/openbabel/generic.h:366:60: warning: ‘sg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:55,179 366 | void SetSpaceGroup(const SpaceGroup* sg) { _spaceGroup = sg; } 2021-07-15T22:10:55,179 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:10:55,179 ./src/formats/msiformat.cpp:106:23: note: ‘sg’ was declared here 2021-07-15T22:10:55,179 106 | const SpaceGroup *sg; 2021-07-15T22:10:55,179 | ^~ 2021-07-15T22:10:55,180 ./src/formats/msiformat.cpp:189:28: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:55,180 189 | atom->SetVector(atof(vs[3].c_str()), 2021-07-15T22:10:55,180 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:55,181 190 | atof(vs[4].c_str()), 2021-07-15T22:10:55,181 | ~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:55,181 191 | atof(vs[5].c_str())); 2021-07-15T22:10:55,181 | ~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:55,182 ./src/formats/msiformat.cpp:235:24: warning: ‘bondOrder’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:55,182 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:10:55,182 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:55,183 ./src/formats/msiformat.cpp:235:56: warning: ‘endBondAtom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:55,183 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:10:55,183 | ~~~~~~~~~~~~^~~ 2021-07-15T22:10:55,183 ./src/formats/msiformat.cpp:235:39: warning: ‘startBondAtom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:55,184 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:10:55,184 | ~~~~~~~~~~~~~~^~~ 2021-07-15T22:10:55,891 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:55,892 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/msiformat.o /tmp/cc9VjuXq.s 2021-07-15T22:10:55,903 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:56,217 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:56,217 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:56,217 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:56,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/msmsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:56,233 Using built-in specs. 2021-07-15T22:10:56,234 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:56,235 Target: arm-linux-gnueabihf 2021-07-15T22:10:56,235 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:56,235 Thread model: posix 2021-07-15T22:10:56,236 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:56,236 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:56,237 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:56,240 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/msmsformat.cpp -quiet -dumpbase msmsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc3eQHPB.s 2021-07-15T22:10:56,259 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:56,260 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:56,260 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:56,262 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:56,262 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:56,262 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:56,263 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:56,263 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:56,263 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:56,263 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:56,264 #include "..." search starts here: 2021-07-15T22:10:56,264 #include <...> search starts here: 2021-07-15T22:10:56,264 /usr/include/eigen3 2021-07-15T22:10:56,265 include 2021-07-15T22:10:56,265 /usr/include/python3.9 2021-07-15T22:10:56,265 /usr/include/c++/10 2021-07-15T22:10:56,265 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:56,266 /usr/include/c++/10/backward 2021-07-15T22:10:56,266 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:56,266 /usr/local/include 2021-07-15T22:10:56,267 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:56,267 /usr/include 2021-07-15T22:10:56,267 End of search list. 2021-07-15T22:10:56,270 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:56,271 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:56,271 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:56,289 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:57,977 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:57,977 from include/openbabel/mol.h:43, 2021-07-15T22:10:57,978 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:10:57,978 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:57,978 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:57,978 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:57,979 | ^ 2021-07-15T22:10:57,979 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:57,979 37 | # define UNUSED(x) x 2021-07-15T22:10:57,979 | ^ 2021-07-15T22:10:58,774 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:58,774 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:10:58,774 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:58,775 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:58,775 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:58,775 | ^ 2021-07-15T22:10:58,775 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:58,776 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:58,776 | ^~~~~~~~ 2021-07-15T22:10:58,778 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:58,779 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:58,779 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:58,779 | ^ 2021-07-15T22:10:58,779 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:58,780 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:58,780 | ^~~~~~~~ 2021-07-15T22:10:58,798 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:58,798 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:58,798 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:58,798 | ^ 2021-07-15T22:10:58,799 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:58,799 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:58,799 | ^~~~~~~~ 2021-07-15T22:10:58,803 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:58,804 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:10:58,804 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:58,804 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:58,804 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:58,804 | ^ 2021-07-15T22:10:58,805 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:58,805 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:58,805 | ^~~~~~~~ 2021-07-15T22:10:59,135 ./src/formats/msmsformat.cpp: In member function ‘virtual int OpenBabel::OBMSMSFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:10:59,135 ./src/formats/msmsformat.cpp:82:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:10:59,135 82 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:10:59,136 | ~~~~^ 2021-07-15T22:10:59,136 ./src/formats/msmsformat.cpp:82:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:10:59,136 82 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:10:59,136 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:11:01,355 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:01,356 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o /tmp/cc3eQHPB.s 2021-07-15T22:11:01,365 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:01,592 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:01,593 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:01,593 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:01,598 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/nulformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/nulformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:01,604 Using built-in specs. 2021-07-15T22:11:01,606 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:01,606 Target: arm-linux-gnueabihf 2021-07-15T22:11:01,606 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:01,607 Thread model: posix 2021-07-15T22:11:01,607 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:01,607 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:01,609 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:01,610 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/nulformat.cpp -quiet -dumpbase nulformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/nulformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBDL085.s 2021-07-15T22:11:01,629 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:01,629 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:01,630 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:01,630 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:01,630 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:01,630 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:01,631 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:01,631 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:01,631 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:01,632 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:01,632 #include "..." search starts here: 2021-07-15T22:11:01,632 #include <...> search starts here: 2021-07-15T22:11:01,632 /usr/include/eigen3 2021-07-15T22:11:01,633 include 2021-07-15T22:11:01,633 /usr/include/python3.9 2021-07-15T22:11:01,633 /usr/include/c++/10 2021-07-15T22:11:01,633 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:01,634 /usr/include/c++/10/backward 2021-07-15T22:11:01,634 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:01,634 /usr/local/include 2021-07-15T22:11:01,635 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:01,635 /usr/include 2021-07-15T22:11:01,635 End of search list. 2021-07-15T22:11:01,640 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:01,641 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:01,641 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:01,658 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:03,628 In file included from ./src/formats/nulformat.cpp:15: 2021-07-15T22:11:03,628 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:03,628 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:03,629 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:03,629 | ^ 2021-07-15T22:11:03,629 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:03,629 37 | # define UNUSED(x) x 2021-07-15T22:11:03,629 | ^ 2021-07-15T22:11:04,692 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,693 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/nulformat.o /tmp/ccBDL085.s 2021-07-15T22:11:04,699 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:04,801 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:04,801 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:04,802 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/nwchemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:04,812 Using built-in specs. 2021-07-15T22:11:04,813 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:04,813 Target: arm-linux-gnueabihf 2021-07-15T22:11:04,814 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:04,814 Thread model: posix 2021-07-15T22:11:04,814 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:04,814 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:04,816 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,818 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/nwchemformat.cpp -quiet -dumpbase nwchemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccvK8UCg.s 2021-07-15T22:11:04,833 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:04,833 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:04,834 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:04,835 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:04,836 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:04,836 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:04,836 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:04,837 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:04,837 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:04,837 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:04,838 #include "..." search starts here: 2021-07-15T22:11:04,838 #include <...> search starts here: 2021-07-15T22:11:04,839 /usr/include/eigen3 2021-07-15T22:11:04,839 include 2021-07-15T22:11:04,839 /usr/include/python3.9 2021-07-15T22:11:04,840 /usr/include/c++/10 2021-07-15T22:11:04,840 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:04,840 /usr/include/c++/10/backward 2021-07-15T22:11:04,841 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:04,841 /usr/local/include 2021-07-15T22:11:04,841 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:04,841 /usr/include 2021-07-15T22:11:04,842 End of search list. 2021-07-15T22:11:04,845 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:04,845 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:04,846 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:04,861 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:06,449 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:06,449 from include/openbabel/mol.h:43, 2021-07-15T22:11:06,450 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:06,450 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:06,450 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:06,450 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:06,450 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:06,450 | ^ 2021-07-15T22:11:06,450 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:06,450 37 | # define UNUSED(x) x 2021-07-15T22:11:06,451 | ^ 2021-07-15T22:11:07,244 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:07,245 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:07,245 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:07,245 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:07,245 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:07,245 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:07,246 | ^ 2021-07-15T22:11:07,246 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:07,246 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:07,246 | ^~~~~~~~ 2021-07-15T22:11:07,249 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:07,250 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:07,250 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:07,250 | ^ 2021-07-15T22:11:07,250 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:07,251 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:07,251 | ^~~~~~~~ 2021-07-15T22:11:07,270 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:07,270 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:07,270 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:07,271 | ^ 2021-07-15T22:11:07,271 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:07,271 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:07,271 | ^~~~~~~~ 2021-07-15T22:11:07,276 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:07,276 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:07,277 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:07,277 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:07,277 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:07,277 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:07,278 | ^ 2021-07-15T22:11:07,278 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:07,278 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:07,278 | ^~~~~~~~ 2021-07-15T22:11:07,616 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,616 ./src/formats/nwchemformat.cpp:221:72: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:11:07,617 221 | if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) 2021-07-15T22:11:07,617 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:07,621 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,622 ./src/formats/nwchemformat.cpp:296:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2021-07-15T22:11:07,622 296 | else if (vs[0][0] == '1') 2021-07-15T22:11:07,622 | ^ 2021-07-15T22:11:07,626 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,627 ./src/formats/nwchemformat.cpp:413:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:11:07,627 413 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) 2021-07-15T22:11:07,627 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:11:07,636 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,636 ./src/formats/nwchemformat.cpp:561:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:11:07,636 561 | if (energies.size() != molecule->NumConformers()) 2021-07-15T22:11:07,636 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:07,679 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,680 ./src/formats/nwchemformat.cpp:826:79: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:11:07,680 826 | if (etab.GetAtomicNum(vs[1].substr(0, end_of_symbol).c_str()) != molecule->GetAtom(i+1)->GetAtomicNum()) 2021-07-15T22:11:07,680 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:07,687 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:07,688 ./src/formats/nwchemformat.cpp:914:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:11:07,688 914 | if (atoi(buffer) != natoms) 2021-07-15T22:11:07,688 | ~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:11:07,689 ./src/formats/nwchemformat.cpp:924:84: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:11:07,689 924 | if ((vs.size() < 4) || (molecule->GetAtom(i+1)->GetAtomicNum() != etab.GetAtomicNum(vs[0].c_str()))) 2021-07-15T22:11:07,689 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:09,209 ./src/formats/nwchemformat.cpp: At global scope: 2021-07-15T22:11:09,209 ./src/formats/nwchemformat.cpp:104:20: warning: ‘OpenBabel::BETA_ORBITAL_PATTERN’ defined but not used [-Wunused-variable] 2021-07-15T22:11:09,209 104 | static const char* BETA_ORBITAL_PATTERN = "Beta"; 2021-07-15T22:11:09,210 | ^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:11,814 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:11,814 ./src/formats/nwchemformat.cpp:237:18: warning: ‘coordinates’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:11,814 237 | delete[] coordinates; 2021-07-15T22:11:11,814 | ^~~~~~~~~~~ 2021-07-15T22:11:13,318 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:13,319 from include/openbabel/mol.h:35, 2021-07-15T22:11:13,319 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:13,319 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:13,319 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:11:13,319 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:13,319 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:13,319 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:13,320 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:13,510 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:13,511 ./src/formats/nwchemformat.cpp:939:21: warning: ‘nbeads’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:13,511 939 | if (bead_number != nbeads) 2021-07-15T22:11:13,511 | ^~ 2021-07-15T22:11:13,520 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:13,520 from include/openbabel/mol.h:35, 2021-07-15T22:11:13,520 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:13,521 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:13,521 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:13,521 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:13,521 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:13,973 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:13,974 from include/openbabel/mol.h:35, 2021-07-15T22:11:13,974 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:13,974 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:13,974 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:11:13,975 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:13,975 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:13,975 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:15,049 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2021-07-15T22:11:15,049 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:15,880 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:15,880 from include/openbabel/mol.h:35, 2021-07-15T22:11:15,880 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:15,880 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:15,881 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:15,881 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:15,881 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:15,882 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:16,672 In file included from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:16,673 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:16,673 include/openbabel/mol.h: In member function ‘void OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:16,673 include/openbabel/mol.h:418:47: warning: ‘energy’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:16,673 418 | void SetEnergy(double energy) { _energy = energy; } 2021-07-15T22:11:16,674 | ~~~~~~~~^~~~~~~~ 2021-07-15T22:11:16,674 ./src/formats/nwchemformat.cpp:736:12: note: ‘energy’ was declared here 2021-07-15T22:11:16,674 736 | double energy; 2021-07-15T22:11:16,674 | ^~~~~~ 2021-07-15T22:11:17,002 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:17,003 from include/openbabel/mol.h:35, 2021-07-15T22:11:17,003 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:17,003 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:17,004 /usr/include/c++/10/bits/vector.tcc: In member function ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:11:17,004 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:17,004 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:17,004 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:17,005 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:17,005 from include/openbabel/mol.h:35, 2021-07-15T22:11:17,005 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:17,006 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:11:17,006 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:17,006 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:17,006 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:18,480 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:18,480 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o /tmp/ccvK8UCg.s 2021-07-15T22:11:18,487 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:19,602 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:19,603 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:19,603 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:19,607 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/opendxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:19,618 Using built-in specs. 2021-07-15T22:11:19,619 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:19,620 Target: arm-linux-gnueabihf 2021-07-15T22:11:19,620 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:19,620 Thread model: posix 2021-07-15T22:11:19,620 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:19,621 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:19,621 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:19,621 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/opendxformat.cpp -quiet -dumpbase opendxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccQsJ6PG.s 2021-07-15T22:11:19,636 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:19,636 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:19,637 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:19,637 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:19,638 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:19,638 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:19,638 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:19,638 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:19,638 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:19,639 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:19,639 #include "..." search starts here: 2021-07-15T22:11:19,639 #include <...> search starts here: 2021-07-15T22:11:19,639 /usr/include/eigen3 2021-07-15T22:11:19,639 include 2021-07-15T22:11:19,640 /usr/include/python3.9 2021-07-15T22:11:19,640 /usr/include/c++/10 2021-07-15T22:11:19,640 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:19,640 /usr/include/c++/10/backward 2021-07-15T22:11:19,640 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:19,640 /usr/local/include 2021-07-15T22:11:19,640 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:19,641 /usr/include 2021-07-15T22:11:19,641 End of search list. 2021-07-15T22:11:19,641 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:19,641 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:19,642 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:19,657 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:21,247 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:21,247 from include/openbabel/mol.h:43, 2021-07-15T22:11:21,247 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:21,247 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:11:21,248 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:21,248 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:21,248 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:21,248 | ^ 2021-07-15T22:11:21,249 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:21,249 37 | # define UNUSED(x) x 2021-07-15T22:11:21,249 | ^ 2021-07-15T22:11:22,043 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:22,044 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:22,044 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:11:22,044 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:22,044 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:22,045 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:22,045 | ^ 2021-07-15T22:11:22,045 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:22,046 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:22,046 | ^~~~~~~~ 2021-07-15T22:11:22,048 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:22,048 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:22,049 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:22,049 | ^ 2021-07-15T22:11:22,049 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:22,049 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:22,050 | ^~~~~~~~ 2021-07-15T22:11:22,067 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:22,067 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:22,068 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:22,068 | ^ 2021-07-15T22:11:22,068 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:22,068 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:22,069 | ^~~~~~~~ 2021-07-15T22:11:22,073 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:22,073 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:22,073 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:11:22,073 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:22,074 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:22,074 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:22,074 | ^ 2021-07-15T22:11:22,074 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:22,075 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:22,075 | ^~~~~~~~ 2021-07-15T22:11:22,404 ./src/formats/opendxformat.cpp: In member function ‘virtual int OpenBabel::OBOpenDXCubeFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:11:22,405 ./src/formats/opendxformat.cpp:65:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:11:22,405 65 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:11:22,405 | ~~~~^ 2021-07-15T22:11:22,406 ./src/formats/opendxformat.cpp:65:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:11:22,406 65 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:11:22,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:11:25,388 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:25,388 from include/openbabel/mol.h:35, 2021-07-15T22:11:25,388 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:25,388 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:11:25,388 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:11:25,388 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:25,388 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:25,389 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:25,448 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:11:25,449 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:25,665 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBOpenDXCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:25,665 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:25,665 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:25,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:25,668 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:25,668 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:25,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:26,364 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:26,365 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o /tmp/ccQsJ6PG.s 2021-07-15T22:11:26,371 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:26,700 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:26,700 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:26,700 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:26,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/orcaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:26,713 Using built-in specs. 2021-07-15T22:11:26,714 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:26,714 Target: arm-linux-gnueabihf 2021-07-15T22:11:26,714 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:26,714 Thread model: posix 2021-07-15T22:11:26,715 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:26,715 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:26,715 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:26,715 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/orcaformat.cpp -quiet -dumpbase orcaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccEiEzWY.s 2021-07-15T22:11:26,728 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:26,728 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:26,728 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:26,729 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:26,729 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:26,729 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:26,730 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:26,730 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:26,730 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:26,730 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:26,731 #include "..." search starts here: 2021-07-15T22:11:26,731 #include <...> search starts here: 2021-07-15T22:11:26,731 /usr/include/eigen3 2021-07-15T22:11:26,731 include 2021-07-15T22:11:26,731 /usr/include/python3.9 2021-07-15T22:11:26,732 /usr/include/c++/10 2021-07-15T22:11:26,732 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:26,732 /usr/include/c++/10/backward 2021-07-15T22:11:26,732 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:26,733 /usr/local/include 2021-07-15T22:11:26,733 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:26,733 /usr/include 2021-07-15T22:11:26,733 End of search list. 2021-07-15T22:11:26,734 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:26,734 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:26,734 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:26,747 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:28,343 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:28,344 from include/openbabel/mol.h:43, 2021-07-15T22:11:28,344 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:28,344 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:28,345 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:28,345 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:28,345 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:28,345 | ^ 2021-07-15T22:11:28,346 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:28,346 37 | # define UNUSED(x) x 2021-07-15T22:11:28,346 | ^ 2021-07-15T22:11:29,138 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:29,138 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:29,138 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:29,138 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:29,138 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:29,139 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:29,139 | ^ 2021-07-15T22:11:29,139 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:29,140 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:29,140 | ^~~~~~~~ 2021-07-15T22:11:29,142 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:29,142 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:29,143 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:29,143 | ^ 2021-07-15T22:11:29,143 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:29,143 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:29,144 | ^~~~~~~~ 2021-07-15T22:11:29,161 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:29,161 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:29,162 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:29,162 | ^ 2021-07-15T22:11:29,162 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:29,162 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:29,162 | ^~~~~~~~ 2021-07-15T22:11:29,167 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:29,167 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:29,167 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:29,167 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:29,168 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:29,168 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:29,168 | ^ 2021-07-15T22:11:29,168 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:29,168 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:29,169 | ^~~~~~~~ 2021-07-15T22:11:29,709 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:29,709 ./src/formats/orcaformat.cpp:338:33: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:11:29,709 338 | while(vs.size() == nColumn+1) { 2021-07-15T22:11:29,710 | ~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:29,711 ./src/formats/orcaformat.cpp:353:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:11:29,711 353 | for (unsigned int i = 0; i < nColumn; i++) { 2021-07-15T22:11:29,712 | ~~^~~~~~~~~ 2021-07-15T22:11:29,712 ./src/formats/orcaformat.cpp:365:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:11:29,713 365 | for (unsigned int i = 0; i < nColumn; i++) { 2021-07-15T22:11:29,713 | ~~^~~~~~~~~ 2021-07-15T22:11:29,726 ./src/formats/orcaformat.cpp:121:12: warning: unused variable ‘energy’ [-Wunused-variable] 2021-07-15T22:11:29,727 121 | double energy=0; 2021-07-15T22:11:29,727 | ^~~~~~ 2021-07-15T22:11:29,727 ./src/formats/orcaformat.cpp:128:9: warning: variable ‘nModeAll’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:11:29,727 128 | int nModeAll = 0; 2021-07-15T22:11:29,728 | ^~~~~~~~ 2021-07-15T22:11:29,751 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:29,751 ./src/formats/orcaformat.cpp:646:10: warning: unused variable ‘buffer’ [-Wunused-variable] 2021-07-15T22:11:29,751 646 | char buffer[BUFF_SIZE]; 2021-07-15T22:11:29,752 | ^~~~~~ 2021-07-15T22:11:33,953 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:33,953 from include/openbabel/mol.h:35, 2021-07-15T22:11:33,954 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:33,954 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:33,954 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:11:33,954 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:33,955 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:33,955 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:34,007 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:11:34,007 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:34,554 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2021-07-15T22:11:34,554 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:36,190 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:36,190 ./src/formats/orcaformat.cpp:210:36: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:36,190 210 | atom->SetVector(x,y,z); //set atom coordinates 2021-07-15T22:11:36,191 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:11:36,191 ./src/formats/orcaformat.cpp:207:37: warning: ‘confCoords’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:36,191 207 | confCoords[i*3+2] = z; 2021-07-15T22:11:36,192 | ^ 2021-07-15T22:11:36,264 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:36,264 from include/openbabel/mol.h:35, 2021-07-15T22:11:36,264 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:36,264 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:36,265 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,265 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,265 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,265 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,266 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,266 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,266 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,266 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,266 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,267 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,267 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,267 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,268 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,268 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,268 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,268 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,268 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,270 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,271 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,271 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,274 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,275 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,275 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,277 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,277 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,277 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,280 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,280 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,280 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,282 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,282 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,282 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,287 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,287 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,288 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,288 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,288 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,288 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,290 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,290 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,290 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,292 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,292 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,292 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,293 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,293 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,293 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,293 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,293 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,294 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,295 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,295 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,295 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,295 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,296 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,296 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,297 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,297 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,298 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,298 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,298 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,299 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,299 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,299 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,299 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,300 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,300 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:36,301 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,307 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:36,307 from include/openbabel/mol.h:35, 2021-07-15T22:11:36,308 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:36,308 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:11:36,308 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,308 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:36,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:36,309 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,310 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:36,310 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:40,939 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:40,939 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o /tmp/ccEiEzWY.s 2021-07-15T22:11:40,946 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:42,113 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:42,113 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:42,114 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:42,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/outformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/outformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:42,127 Using built-in specs. 2021-07-15T22:11:42,128 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:42,129 Target: arm-linux-gnueabihf 2021-07-15T22:11:42,129 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:42,129 Thread model: posix 2021-07-15T22:11:42,129 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:42,129 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:42,130 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:42,130 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/outformat.cpp -quiet -dumpbase outformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/outformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccbWzBae.s 2021-07-15T22:11:42,143 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:42,143 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:42,144 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:42,144 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:42,144 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:42,144 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:42,144 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:42,145 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:42,145 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:42,145 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:42,145 #include "..." search starts here: 2021-07-15T22:11:42,146 #include <...> search starts here: 2021-07-15T22:11:42,146 /usr/include/eigen3 2021-07-15T22:11:42,146 include 2021-07-15T22:11:42,146 /usr/include/python3.9 2021-07-15T22:11:42,146 /usr/include/c++/10 2021-07-15T22:11:42,146 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:42,146 /usr/include/c++/10/backward 2021-07-15T22:11:42,147 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:42,147 /usr/local/include 2021-07-15T22:11:42,147 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:42,147 /usr/include 2021-07-15T22:11:42,147 End of search list. 2021-07-15T22:11:42,147 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:42,148 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:42,148 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:42,164 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:44,074 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:44,074 from include/openbabel/mol.h:43, 2021-07-15T22:11:44,075 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:44,075 from ./src/formats/outformat.cpp:16: 2021-07-15T22:11:44,075 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:44,075 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:44,075 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:44,076 | ^ 2021-07-15T22:11:44,076 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:44,076 37 | # define UNUSED(x) x 2021-07-15T22:11:44,076 | ^ 2021-07-15T22:11:45,054 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:45,054 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:45,054 from ./src/formats/outformat.cpp:16: 2021-07-15T22:11:45,055 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:45,055 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:45,055 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:45,055 | ^ 2021-07-15T22:11:45,056 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:45,056 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:45,056 | ^~~~~~~~ 2021-07-15T22:11:45,065 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:45,065 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:45,066 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:45,066 | ^ 2021-07-15T22:11:45,066 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:45,066 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:45,066 | ^~~~~~~~ 2021-07-15T22:11:45,082 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:45,082 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:45,082 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:45,082 | ^ 2021-07-15T22:11:45,083 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:45,083 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:45,083 | ^~~~~~~~ 2021-07-15T22:11:45,090 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:45,091 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:45,091 from ./src/formats/outformat.cpp:16: 2021-07-15T22:11:45,091 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:45,091 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:45,091 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:45,091 | ^ 2021-07-15T22:11:45,092 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:45,092 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:45,092 | ^~~~~~~~ 2021-07-15T22:11:48,764 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:48,764 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/outformat.o /tmp/ccbWzBae.s 2021-07-15T22:11:48,771 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:49,048 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:49,049 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:49,049 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:49,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/painterformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/painterformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:49,060 Using built-in specs. 2021-07-15T22:11:49,061 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:49,062 Target: arm-linux-gnueabihf 2021-07-15T22:11:49,062 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:49,062 Thread model: posix 2021-07-15T22:11:49,063 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:49,063 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:49,064 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:49,067 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/painterformat.cpp -quiet -dumpbase painterformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/painterformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc18GGaq.s 2021-07-15T22:11:49,081 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:49,082 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:49,083 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:49,084 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:49,085 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:49,085 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:49,086 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:49,086 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:49,086 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:49,087 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:49,087 #include "..." search starts here: 2021-07-15T22:11:49,088 #include <...> search starts here: 2021-07-15T22:11:49,088 /usr/include/eigen3 2021-07-15T22:11:49,088 include 2021-07-15T22:11:49,088 /usr/include/python3.9 2021-07-15T22:11:49,089 /usr/include/c++/10 2021-07-15T22:11:49,089 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:49,090 /usr/include/c++/10/backward 2021-07-15T22:11:49,090 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:49,090 /usr/local/include 2021-07-15T22:11:49,090 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:49,090 /usr/include 2021-07-15T22:11:49,091 End of search list. 2021-07-15T22:11:49,095 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:49,095 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:49,096 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:49,110 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:51,030 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:51,031 from include/openbabel/mol.h:43, 2021-07-15T22:11:51,031 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:51,031 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:11:51,031 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:51,031 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:51,032 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:51,032 | ^ 2021-07-15T22:11:51,032 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:51,032 37 | # define UNUSED(x) x 2021-07-15T22:11:51,032 | ^ 2021-07-15T22:11:52,019 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:52,019 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:52,020 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:11:52,020 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:52,020 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:52,020 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:52,020 | ^ 2021-07-15T22:11:52,021 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:52,021 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:52,021 | ^~~~~~~~ 2021-07-15T22:11:52,027 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:52,027 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:52,027 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:52,027 | ^ 2021-07-15T22:11:52,028 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:52,028 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:52,028 | ^~~~~~~~ 2021-07-15T22:11:52,052 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:52,052 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:52,052 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:52,053 | ^ 2021-07-15T22:11:52,053 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:52,053 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:52,053 | ^~~~~~~~ 2021-07-15T22:11:52,060 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:52,061 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:52,061 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:11:52,061 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:52,061 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:52,061 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:52,062 | ^ 2021-07-15T22:11:52,062 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:52,062 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:52,063 | ^~~~~~~~ 2021-07-15T22:11:52,508 In file included from ./src/formats/painterformat.cpp:22: 2021-07-15T22:11:52,508 include/openbabel/depict/commandpainter.h: In member function ‘virtual void OpenBabel::CommandPainter::SetFontFamily(const string&)’: 2021-07-15T22:11:52,508 include/openbabel/depict/commandpainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:11:52,509 34 | void SetFontFamily(const std::string &fontFamily) {} // FIXME 2021-07-15T22:11:52,509 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:11:52,517 ./src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:52,517 ./src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 2021-07-15T22:11:52,518 113 | ostream& ofs = *pConv->GetOutStream(); 2021-07-15T22:11:52,518 | ^~~ 2021-07-15T22:11:55,559 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:55,560 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/painterformat.o /tmp/cc18GGaq.s 2021-07-15T22:11:55,566 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:55,839 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:55,839 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:55,839 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:55,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pcmodelformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:55,852 Using built-in specs. 2021-07-15T22:11:55,853 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:55,854 Target: arm-linux-gnueabihf 2021-07-15T22:11:55,854 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:55,854 Thread model: posix 2021-07-15T22:11:55,854 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:55,855 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:55,856 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:55,859 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pcmodelformat.cpp -quiet -dumpbase pcmodelformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccDDVATD.s 2021-07-15T22:11:55,875 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:55,875 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:55,876 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:55,878 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:55,878 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:55,879 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:55,879 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:55,879 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:55,880 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:55,880 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:55,881 #include "..." search starts here: 2021-07-15T22:11:55,881 #include <...> search starts here: 2021-07-15T22:11:55,882 /usr/include/eigen3 2021-07-15T22:11:55,882 include 2021-07-15T22:11:55,882 /usr/include/python3.9 2021-07-15T22:11:55,882 /usr/include/c++/10 2021-07-15T22:11:55,883 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:55,883 /usr/include/c++/10/backward 2021-07-15T22:11:55,883 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:55,884 /usr/local/include 2021-07-15T22:11:55,884 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:55,884 /usr/include 2021-07-15T22:11:55,884 End of search list. 2021-07-15T22:11:55,886 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:55,886 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:55,887 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:55,908 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:57,491 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:57,492 from include/openbabel/mol.h:43, 2021-07-15T22:11:57,492 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:57,493 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:11:57,493 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:57,493 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:57,494 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:57,494 | ^ 2021-07-15T22:11:57,494 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:57,495 37 | # define UNUSED(x) x 2021-07-15T22:11:57,495 | ^ 2021-07-15T22:11:58,288 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:58,288 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:58,289 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:11:58,289 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,290 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,290 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:58,290 | ^ 2021-07-15T22:11:58,291 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:58,291 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:58,292 | ^~~~~~~~ 2021-07-15T22:11:58,292 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,293 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,293 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:58,294 | ^ 2021-07-15T22:11:58,294 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:58,295 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:58,295 | ^~~~~~~~ 2021-07-15T22:11:58,312 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,312 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,312 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:58,313 | ^ 2021-07-15T22:11:58,313 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:58,314 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:58,314 | ^~~~~~~~ 2021-07-15T22:11:58,317 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:58,318 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:58,318 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:11:58,319 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,319 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,320 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:58,320 | ^ 2021-07-15T22:11:58,321 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:58,321 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:58,321 | ^~~~~~~~ 2021-07-15T22:12:01,805 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:01,806 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o /tmp/ccDDVATD.s 2021-07-15T22:12:01,813 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:02,109 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:02,109 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:02,110 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:02,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pdbformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:02,121 Using built-in specs. 2021-07-15T22:12:02,122 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:02,122 Target: arm-linux-gnueabihf 2021-07-15T22:12:02,123 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:02,123 Thread model: posix 2021-07-15T22:12:02,123 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:02,123 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:02,123 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:02,124 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pdbformat.cpp -quiet -dumpbase pdbformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccJicDj8.s 2021-07-15T22:12:02,138 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:02,139 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:02,139 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:02,140 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:02,140 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:02,140 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:02,140 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:02,140 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:02,141 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:02,141 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:02,141 #include "..." search starts here: 2021-07-15T22:12:02,141 #include <...> search starts here: 2021-07-15T22:12:02,141 /usr/include/eigen3 2021-07-15T22:12:02,141 include 2021-07-15T22:12:02,142 /usr/include/python3.9 2021-07-15T22:12:02,142 /usr/include/c++/10 2021-07-15T22:12:02,142 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:02,142 /usr/include/c++/10/backward 2021-07-15T22:12:02,142 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:02,142 /usr/local/include 2021-07-15T22:12:02,143 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:02,143 /usr/include 2021-07-15T22:12:02,143 End of search list. 2021-07-15T22:12:02,143 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:02,143 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:02,143 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:02,163 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:03,800 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:03,800 from include/openbabel/mol.h:43, 2021-07-15T22:12:03,801 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:03,801 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:03,801 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:03,801 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:03,802 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:03,802 | ^ 2021-07-15T22:12:03,802 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:03,802 37 | # define UNUSED(x) x 2021-07-15T22:12:03,802 | ^ 2021-07-15T22:12:04,627 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:04,627 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:04,627 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:04,627 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,628 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,628 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:04,628 | ^ 2021-07-15T22:12:04,628 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:04,629 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:04,629 | ^~~~~~~~ 2021-07-15T22:12:04,631 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,631 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,632 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:04,632 | ^ 2021-07-15T22:12:04,632 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:04,632 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:04,633 | ^~~~~~~~ 2021-07-15T22:12:04,650 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,650 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,651 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:04,651 | ^ 2021-07-15T22:12:04,651 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:04,651 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:04,652 | ^~~~~~~~ 2021-07-15T22:12:04,656 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:04,656 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:04,657 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:04,657 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,657 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,657 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:04,657 | ^ 2021-07-15T22:12:04,658 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:04,658 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:04,658 | ^~~~~~~~ 2021-07-15T22:12:09,332 ./src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:09,332 ./src/formats/pdbformat.cpp:623:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:12:09,332 623 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:12:09,333 | ^ 2021-07-15T22:12:09,333 In file included from /usr/include/stdio.h:867, 2021-07-15T22:12:09,333 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:12:09,333 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:12:09,334 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:12:09,334 from /usr/include/c++/10/string:55, 2021-07-15T22:12:09,334 from include/openbabel/mol.h:36, 2021-07-15T22:12:09,334 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:09,334 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:09,335 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:12:09,335 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:12:09,335 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:09,335 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:12:09,335 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:09,336 ./src/formats/pdbformat.cpp:641:70: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:12:09,336 641 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:12:09,336 | ^ 2021-07-15T22:12:09,337 In file included from /usr/include/stdio.h:867, 2021-07-15T22:12:09,337 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:12:09,337 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:12:09,337 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:12:09,338 from /usr/include/c++/10/string:55, 2021-07-15T22:12:09,338 from include/openbabel/mol.h:36, 2021-07-15T22:12:09,338 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:09,338 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:09,338 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:12:09,338 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:12:09,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:09,339 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:12:09,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:09,339 ./src/formats/pdbformat.cpp:678:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 2021-07-15T22:12:09,340 678 | snprintf(scharge, 3, "%+d", charge); 2021-07-15T22:12:09,340 | ^~~ 2021-07-15T22:12:09,340 ./src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767] 2021-07-15T22:12:09,340 678 | snprintf(scharge, 3, "%+d", charge); 2021-07-15T22:12:09,340 | ^~~~~ 2021-07-15T22:12:09,341 In file included from /usr/include/stdio.h:867, 2021-07-15T22:12:09,341 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:12:09,341 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:12:09,341 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:12:09,342 from /usr/include/c++/10/string:55, 2021-07-15T22:12:09,342 from include/openbabel/mol.h:36, 2021-07-15T22:12:09,342 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:09,342 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:12:09,343 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 2021-07-15T22:12:09,343 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:12:09,343 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:09,343 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:12:09,343 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:13,919 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:13,919 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o /tmp/ccJicDj8.s 2021-07-15T22:12:13,924 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:14,834 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:14,835 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:14,835 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:14,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pdbqtformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:14,849 Using built-in specs. 2021-07-15T22:12:14,850 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:14,850 Target: arm-linux-gnueabihf 2021-07-15T22:12:14,850 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:14,851 Thread model: posix 2021-07-15T22:12:14,851 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:14,851 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:14,851 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:14,851 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pdbqtformat.cpp -quiet -dumpbase pdbqtformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccWlF18u.s 2021-07-15T22:12:14,865 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:14,866 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:14,866 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:14,866 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:14,866 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:14,867 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:14,867 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:14,867 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:14,867 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:14,867 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:14,867 #include "..." search starts here: 2021-07-15T22:12:14,868 #include <...> search starts here: 2021-07-15T22:12:14,868 /usr/include/eigen3 2021-07-15T22:12:14,868 include 2021-07-15T22:12:14,868 /usr/include/python3.9 2021-07-15T22:12:14,868 /usr/include/c++/10 2021-07-15T22:12:14,868 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:14,868 /usr/include/c++/10/backward 2021-07-15T22:12:14,869 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:14,869 /usr/local/include 2021-07-15T22:12:14,869 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:14,869 /usr/include 2021-07-15T22:12:14,869 End of search list. 2021-07-15T22:12:14,869 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:14,870 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:14,870 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:14,886 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:16,833 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:16,833 from include/openbabel/mol.h:43, 2021-07-15T22:12:16,833 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:16,833 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:16,834 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:16,834 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:16,834 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:16,834 | ^ 2021-07-15T22:12:16,834 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:16,834 37 | # define UNUSED(x) x 2021-07-15T22:12:16,834 | ^ 2021-07-15T22:12:17,810 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:17,811 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:17,811 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:17,811 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:17,811 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:17,811 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:17,811 | ^ 2021-07-15T22:12:17,812 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:17,812 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:17,812 | ^~~~~~~~ 2021-07-15T22:12:17,815 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:17,815 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:17,816 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:17,816 | ^ 2021-07-15T22:12:17,816 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:17,816 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:17,816 | ^~~~~~~~ 2021-07-15T22:12:17,838 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:17,838 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:17,839 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:17,839 | ^ 2021-07-15T22:12:17,839 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:17,839 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:17,839 | ^~~~~~~~ 2021-07-15T22:12:17,845 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:17,845 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:17,846 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:17,846 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:17,846 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:17,846 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:17,846 | ^ 2021-07-15T22:12:17,846 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:17,847 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:17,847 | ^~~~~~~~ 2021-07-15T22:12:18,480 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::OutputTree(OpenBabel::OBConversion*, OpenBabel::OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)’: 2021-07-15T22:12:18,480 ./src/formats/pdbqtformat.cpp:580:20: warning: unused variable ‘child’ [-Wunused-variable] 2021-07-15T22:12:18,480 580 | unsigned int child=i; 2021-07-15T22:12:18,480 | ^~~~~ 2021-07-15T22:12:18,552 ./src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::ConstructTree(std::map&, std::vector >, unsigned int, const OpenBabel::OBMol&, bool)’: 2021-07-15T22:12:18,553 ./src/formats/pdbqtformat.cpp:609:145: warning: unused parameter ‘flexible’ [-Wunused-parameter] 2021-07-15T22:12:18,553 609 | void ConstructTree (map & tree, vector > rigid_fragments, unsigned int root_piece, const OBMol& mol, bool flexible) 2021-07-15T22:12:18,553 | ~~~~~^~~~~~~~ 2021-07-15T22:12:18,575 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::Separate_preserve_charges(OpenBabel::OBMol&, std::vector&)’: 2021-07-15T22:12:18,575 ./src/formats/pdbqtformat.cpp:794:9: warning: unused variable ‘fragments’ [-Wunused-variable] 2021-07-15T22:12:18,575 794 | int fragments = 0; 2021-07-15T22:12:18,575 | ^~~~~~~~~ 2021-07-15T22:12:18,672 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::parseAtomRecord(char*, OpenBabel::OBMol&, int)’: 2021-07-15T22:12:18,672 ./src/formats/pdbqtformat.cpp:1045:60: warning: unused parameter ‘chainNum’ [-Wunused-parameter] 2021-07-15T22:12:18,672 1045 | static bool parseAtomRecord(char *buffer, OBMol &mol,int chainNum) 2021-07-15T22:12:18,673 | ~~~~^~~~~~~~ 2021-07-15T22:12:20,858 ./src/formats/pdbqtformat.cpp: At global scope: 2021-07-15T22:12:20,858 ./src/formats/pdbqtformat.cpp:747:16: warning: ‘unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)’ defined but not used [-Wunused-function] 2021-07-15T22:12:20,858 747 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) 2021-07-15T22:12:20,859 | ^~~~~~~~~~ 2021-07-15T22:12:23,583 ./src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)’: 2021-07-15T22:12:23,584 ./src/formats/pdbqtformat.cpp:334:52: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:12:23,584 334 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:12:23,584 | ^ 2021-07-15T22:12:23,584 In file included from /usr/include/stdio.h:867, 2021-07-15T22:12:23,584 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:12:23,584 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:12:23,585 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:12:23,585 from /usr/include/c++/10/string:55, 2021-07-15T22:12:23,585 from include/openbabel/mol.h:36, 2021-07-15T22:12:23,585 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:23,585 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:23,585 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:12:23,585 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:12:23,586 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:23,586 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:12:23,586 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:23,586 ./src/formats/pdbqtformat.cpp:351:60: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:12:23,586 351 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:12:23,586 | ^ 2021-07-15T22:12:23,586 In file included from /usr/include/stdio.h:867, 2021-07-15T22:12:23,586 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:12:23,587 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:12:23,587 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:12:23,587 from /usr/include/c++/10/string:55, 2021-07-15T22:12:23,587 from include/openbabel/mol.h:36, 2021-07-15T22:12:23,587 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:23,587 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:23,587 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:12:23,587 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:12:23,588 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:23,588 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:12:23,588 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:26,629 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:26,629 from include/openbabel/mol.h:35, 2021-07-15T22:12:26,629 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:26,629 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:26,629 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2021-07-15T22:12:26,629 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:26,630 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:26,630 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:33,016 In file included from /usr/include/string.h:495, 2021-07-15T22:12:33,016 from /usr/include/c++/10/cstring:42, 2021-07-15T22:12:33,016 from include/openbabel/data.h:26, 2021-07-15T22:12:33,016 from include/openbabel/mol.h:46, 2021-07-15T22:12:33,016 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:33,017 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:33,017 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:12:33,017 inlined from ‘virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/pdbqtformat.cpp:915:22: 2021-07-15T22:12:33,017 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 10 equals destination size [-Wstringop-truncation] 2021-07-15T22:12:33,017 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:12:33,017 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:33,169 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:33,169 from include/openbabel/mol.h:35, 2021-07-15T22:12:33,169 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:33,169 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:12:33,169 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:33,169 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:33,170 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:33,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:33,170 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:33,170 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:33,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:36,020 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:36,020 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o /tmp/ccWlF18u.s 2021-07-15T22:12:36,028 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:37,308 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:37,309 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:37,309 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:37,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pointcloudformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:37,323 Using built-in specs. 2021-07-15T22:12:37,324 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:37,324 Target: arm-linux-gnueabihf 2021-07-15T22:12:37,324 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:37,325 Thread model: posix 2021-07-15T22:12:37,325 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:37,325 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:37,325 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:37,325 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pointcloudformat.cpp -quiet -dumpbase pointcloudformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccLDzMtJ.s 2021-07-15T22:12:37,339 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:37,340 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:37,340 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:37,341 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:37,341 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:37,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:37,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:37,342 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:37,342 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:37,342 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:37,343 #include "..." search starts here: 2021-07-15T22:12:37,343 #include <...> search starts here: 2021-07-15T22:12:37,343 /usr/include/eigen3 2021-07-15T22:12:37,343 include 2021-07-15T22:12:37,343 /usr/include/python3.9 2021-07-15T22:12:37,343 /usr/include/c++/10 2021-07-15T22:12:37,344 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:37,344 /usr/include/c++/10/backward 2021-07-15T22:12:37,344 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:37,344 /usr/local/include 2021-07-15T22:12:37,344 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:37,344 /usr/include 2021-07-15T22:12:37,345 End of search list. 2021-07-15T22:12:37,345 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:37,345 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:37,345 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:37,363 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:39,315 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:39,316 from include/openbabel/mol.h:43, 2021-07-15T22:12:39,316 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:39,316 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:39,316 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:39,317 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:39,317 | ^ 2021-07-15T22:12:39,317 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:39,317 37 | # define UNUSED(x) x 2021-07-15T22:12:39,317 | ^ 2021-07-15T22:12:40,305 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:40,305 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:40,305 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:40,305 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:40,305 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:40,306 | ^ 2021-07-15T22:12:40,306 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:40,306 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:40,306 | ^~~~~~~~ 2021-07-15T22:12:40,310 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:40,310 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:40,311 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:40,311 | ^ 2021-07-15T22:12:40,311 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:40,311 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:40,311 | ^~~~~~~~ 2021-07-15T22:12:40,333 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:40,334 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:40,334 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:40,334 | ^ 2021-07-15T22:12:40,334 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:40,335 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:40,335 | ^~~~~~~~ 2021-07-15T22:12:40,341 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:40,341 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:40,341 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:40,341 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:40,341 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:40,342 | ^ 2021-07-15T22:12:40,342 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:40,342 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:40,342 | ^~~~~~~~ 2021-07-15T22:12:40,752 ./src/formats/pointcloudformat.cpp: In member function ‘virtual int OpenBabel::PointCloudFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:12:40,753 ./src/formats/pointcloudformat.cpp:104:36: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:12:40,753 104 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:12:40,753 | ~~~~^ 2021-07-15T22:12:40,753 ./src/formats/pointcloudformat.cpp:104:64: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:12:40,754 104 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:12:40,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:12:40,781 ./src/formats/pointcloudformat.cpp: In member function ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:40,782 ./src/formats/pointcloudformat.cpp:217:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:12:40,782 217 | for( int j = 0; j < radius_mult_list.size(); j++ ) { 2021-07-15T22:12:40,782 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:43,647 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:43,648 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,648 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,648 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:12:43,648 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:43,648 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:43,649 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:43,719 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:43,719 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,719 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,720 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool OpenBabel::conditional_add(std::vector&, OpenBabel::vector3, double)’: 2021-07-15T22:12:43,720 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,720 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:43,720 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:43,757 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:43,757 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,757 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,757 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:43,758 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:43,758 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:43,758 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:43,811 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:43,811 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:43,960 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:43,960 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,961 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,961 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:43,961 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,961 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:43,962 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:43,962 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,962 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:43,962 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:43,962 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:43,963 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,963 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,963 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,963 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:43,963 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:43,964 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,964 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:43,964 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:43,964 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:43,964 from include/openbabel/mol.h:35, 2021-07-15T22:12:43,965 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:12:43,965 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:43,965 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:43,965 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:44,416 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:44,417 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o /tmp/ccLDzMtJ.s 2021-07-15T22:12:44,423 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:44,673 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:44,673 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:44,673 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:44,675 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/posformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/posformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:44,685 Using built-in specs. 2021-07-15T22:12:44,687 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:44,687 Target: arm-linux-gnueabihf 2021-07-15T22:12:44,687 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:44,687 Thread model: posix 2021-07-15T22:12:44,688 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:44,688 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:44,688 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:44,688 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/posformat.cpp -quiet -dumpbase posformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/posformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccYDOgLV.s 2021-07-15T22:12:44,702 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:44,703 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:44,703 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:44,704 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:44,704 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:44,704 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:44,704 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:44,704 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:44,705 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:44,705 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:44,705 #include "..." search starts here: 2021-07-15T22:12:44,705 #include <...> search starts here: 2021-07-15T22:12:44,705 /usr/include/eigen3 2021-07-15T22:12:44,706 include 2021-07-15T22:12:44,706 /usr/include/python3.9 2021-07-15T22:12:44,706 /usr/include/c++/10 2021-07-15T22:12:44,706 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:44,706 /usr/include/c++/10/backward 2021-07-15T22:12:44,706 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:44,707 /usr/local/include 2021-07-15T22:12:44,707 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:44,707 /usr/include 2021-07-15T22:12:44,707 End of search list. 2021-07-15T22:12:44,707 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:44,708 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:44,708 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:44,724 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:46,680 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:46,680 from include/openbabel/mol.h:43, 2021-07-15T22:12:46,680 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:46,680 from ./src/formats/posformat.cpp:15: 2021-07-15T22:12:46,680 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:46,681 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:46,681 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:46,681 | ^ 2021-07-15T22:12:46,681 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:46,682 37 | # define UNUSED(x) x 2021-07-15T22:12:46,682 | ^ 2021-07-15T22:12:47,665 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:47,666 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:47,666 from ./src/formats/posformat.cpp:15: 2021-07-15T22:12:47,666 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:47,666 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:47,667 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:47,667 | ^ 2021-07-15T22:12:47,667 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:47,667 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:47,668 | ^~~~~~~~ 2021-07-15T22:12:47,671 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:47,671 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:47,672 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:47,672 | ^ 2021-07-15T22:12:47,672 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:47,672 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:47,672 | ^~~~~~~~ 2021-07-15T22:12:47,695 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:47,695 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:47,695 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:47,695 | ^ 2021-07-15T22:12:47,696 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:47,696 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:47,696 | ^~~~~~~~ 2021-07-15T22:12:47,702 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:47,702 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:47,702 from ./src/formats/posformat.cpp:15: 2021-07-15T22:12:47,702 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:47,702 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:47,703 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:47,703 | ^ 2021-07-15T22:12:47,703 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:47,703 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:47,703 | ^~~~~~~~ 2021-07-15T22:12:48,115 ./src/formats/posformat.cpp: In member function ‘virtual bool OpenBabel::POSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:48,115 ./src/formats/posformat.cpp:101:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:12:48,115 101 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:12:48,115 | ~^ ~~~~~~~ 2021-07-15T22:12:48,116 | | | 2021-07-15T22:12:48,116 | | unsigned int* 2021-07-15T22:12:48,116 | int* 2021-07-15T22:12:48,116 | %d 2021-07-15T22:12:52,213 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:52,213 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/posformat.o /tmp/ccYDOgLV.s 2021-07-15T22:12:52,220 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:52,580 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:52,581 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:52,581 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:52,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/povrayformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:52,592 Using built-in specs. 2021-07-15T22:12:52,594 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:52,595 Target: arm-linux-gnueabihf 2021-07-15T22:12:52,595 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:52,595 Thread model: posix 2021-07-15T22:12:52,596 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:52,596 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:52,597 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:52,601 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/povrayformat.cpp -quiet -dumpbase povrayformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4D2Tma.s 2021-07-15T22:12:52,616 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:52,617 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:52,617 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:52,618 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:52,619 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:52,619 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:52,619 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:52,620 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:52,620 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:52,620 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:52,620 #include "..." search starts here: 2021-07-15T22:12:52,621 #include <...> search starts here: 2021-07-15T22:12:52,621 /usr/include/eigen3 2021-07-15T22:12:52,621 include 2021-07-15T22:12:52,621 /usr/include/python3.9 2021-07-15T22:12:52,621 /usr/include/c++/10 2021-07-15T22:12:52,622 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:52,622 /usr/include/c++/10/backward 2021-07-15T22:12:52,622 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:52,622 /usr/local/include 2021-07-15T22:12:52,623 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:52,623 /usr/include 2021-07-15T22:12:52,623 End of search list. 2021-07-15T22:12:52,623 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:52,624 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:52,624 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:52,639 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:54,584 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:54,584 from include/openbabel/mol.h:43, 2021-07-15T22:12:54,584 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:54,585 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:12:54,585 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:54,585 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:54,585 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:54,586 | ^ 2021-07-15T22:12:54,586 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:54,586 37 | # define UNUSED(x) x 2021-07-15T22:12:54,586 | ^ 2021-07-15T22:12:55,567 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:55,567 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:55,568 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:12:55,568 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:55,568 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:55,568 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:55,568 | ^ 2021-07-15T22:12:55,569 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:55,569 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:55,569 | ^~~~~~~~ 2021-07-15T22:12:55,573 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:55,573 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:55,573 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:55,573 | ^ 2021-07-15T22:12:55,574 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:55,574 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:55,574 | ^~~~~~~~ 2021-07-15T22:12:55,596 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:55,596 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:55,597 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:55,597 | ^ 2021-07-15T22:12:55,597 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:55,597 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:55,597 | ^~~~~~~~ 2021-07-15T22:12:55,603 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:55,603 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:55,604 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:12:55,604 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:55,604 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:55,604 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:55,604 | ^ 2021-07-15T22:12:55,605 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:55,605 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:55,605 | ^~~~~~~~ 2021-07-15T22:12:56,140 ./src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: 2021-07-15T22:12:56,141 ./src/formats/povrayformat.cpp:168:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:56,141 168 | size_t time_res; /* Result of strftime */ 2021-07-15T22:12:56,141 | ^~~~~~~~ 2021-07-15T22:12:56,141 ./src/formats/povrayformat.cpp:164:68: warning: unused parameter ‘prefix’ [-Wunused-parameter] 2021-07-15T22:12:56,141 164 | void PovrayFormat::OutputHeader(ostream &ofs, OBMol &mol, string prefix) 2021-07-15T22:12:56,142 | ~~~~~~~^~~~~~ 2021-07-15T22:12:56,306 ./src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:56,306 ./src/formats/povrayformat.cpp:802:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:12:56,306 802 | const char* title = pmol->GetTitle(); 2021-07-15T22:12:56,307 | ^~~~~ 2021-07-15T22:13:04,010 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:04,011 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o /tmp/cc4D2Tma.s 2021-07-15T22:13:04,019 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:04,711 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:04,711 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:04,712 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:04,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pqrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:04,722 Using built-in specs. 2021-07-15T22:13:04,723 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:04,724 Target: arm-linux-gnueabihf 2021-07-15T22:13:04,724 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:04,724 Thread model: posix 2021-07-15T22:13:04,725 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:04,725 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:04,725 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:04,726 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pqrformat.cpp -quiet -dumpbase pqrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc974ZBE.s 2021-07-15T22:13:04,738 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:04,738 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:04,739 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:04,739 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:04,739 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:04,739 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:04,740 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:04,740 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:04,740 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:04,741 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:04,741 #include "..." search starts here: 2021-07-15T22:13:04,741 #include <...> search starts here: 2021-07-15T22:13:04,741 /usr/include/eigen3 2021-07-15T22:13:04,742 include 2021-07-15T22:13:04,742 /usr/include/python3.9 2021-07-15T22:13:04,742 /usr/include/c++/10 2021-07-15T22:13:04,742 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:04,742 /usr/include/c++/10/backward 2021-07-15T22:13:04,743 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:04,743 /usr/local/include 2021-07-15T22:13:04,743 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:04,743 /usr/include 2021-07-15T22:13:04,744 End of search list. 2021-07-15T22:13:04,744 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:04,744 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:04,745 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:04,759 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:06,680 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:06,680 from include/openbabel/mol.h:43, 2021-07-15T22:13:06,680 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:06,681 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:06,681 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:06,681 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:06,681 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:06,682 | ^ 2021-07-15T22:13:06,682 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:06,682 37 | # define UNUSED(x) x 2021-07-15T22:13:06,682 | ^ 2021-07-15T22:13:07,669 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:07,669 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:07,669 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:07,670 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:07,670 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:07,670 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:07,671 | ^ 2021-07-15T22:13:07,671 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:07,671 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:07,672 | ^~~~~~~~ 2021-07-15T22:13:07,675 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:07,675 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:07,675 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:07,676 | ^ 2021-07-15T22:13:07,676 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:07,676 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:07,676 | ^~~~~~~~ 2021-07-15T22:13:07,698 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:07,699 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:07,699 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:07,699 | ^ 2021-07-15T22:13:07,700 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:07,700 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:07,700 | ^~~~~~~~ 2021-07-15T22:13:07,705 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:07,706 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:07,706 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:07,706 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:07,706 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:07,707 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:07,707 | ^ 2021-07-15T22:13:07,707 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:07,708 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:07,708 | ^~~~~~~~ 2021-07-15T22:13:08,143 ./src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomCharge(char*, OpenBabel::OBMol&)’: 2021-07-15T22:13:08,143 ./src/formats/pqrformat.cpp:196:13: warning: unused variable ‘atom’ [-Wunused-variable] 2021-07-15T22:13:08,144 196 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); 2021-07-15T22:13:08,144 | ^~~~ 2021-07-15T22:13:08,144 ./src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomRadius(char*, OpenBabel::OBMol&)’: 2021-07-15T22:13:08,145 ./src/formats/pqrformat.cpp:211:13: warning: unused variable ‘atom’ [-Wunused-variable] 2021-07-15T22:13:08,145 211 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); 2021-07-15T22:13:08,145 | ^~~~ 2021-07-15T22:13:11,100 ./src/formats/pqrformat.cpp: In member function ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:11,101 ./src/formats/pqrformat.cpp:501:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:13:11,101 501 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:13:11,101 | ^ 2021-07-15T22:13:11,102 In file included from /usr/include/stdio.h:867, 2021-07-15T22:13:11,102 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:13:11,102 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:13:11,102 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:13:11,103 from /usr/include/c++/10/string:55, 2021-07-15T22:13:11,103 from include/openbabel/mol.h:36, 2021-07-15T22:13:11,103 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:11,103 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:11,104 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:13:11,104 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:13:11,104 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:11,104 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:13:11,105 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:11,105 ./src/formats/pqrformat.cpp:518:66: warning: ‘%-3s’ directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 2021-07-15T22:13:11,105 518 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:13:11,105 | ^~~~ ~~~ 2021-07-15T22:13:11,106 In file included from /usr/include/stdio.h:867, 2021-07-15T22:13:11,106 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:13:11,106 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:13:11,107 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:13:11,107 from /usr/include/c++/10/string:55, 2021-07-15T22:13:11,107 from include/openbabel/mol.h:36, 2021-07-15T22:13:11,107 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:11,107 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:11,108 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 17 bytes into a destination of size 10 2021-07-15T22:13:11,108 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:13:11,108 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:11,108 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:13:11,109 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:12,113 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:13:12,114 from include/openbabel/mol.h:35, 2021-07-15T22:13:12,114 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:12,114 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:13:12,114 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:13:12,115 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:12,115 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:13:12,115 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:14,188 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::PQRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:14,188 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:14,189 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:14,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:14,190 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:14,190 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:14,190 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:15,050 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:15,051 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o /tmp/cc974ZBE.s 2021-07-15T22:13:15,057 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:15,756 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:15,756 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:15,756 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:15,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pwscfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:15,768 Using built-in specs. 2021-07-15T22:13:15,769 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:15,770 Target: arm-linux-gnueabihf 2021-07-15T22:13:15,770 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:15,770 Thread model: posix 2021-07-15T22:13:15,770 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:15,771 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:15,771 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:15,774 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pwscfformat.cpp -quiet -dumpbase pwscfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmo5kI3.s 2021-07-15T22:13:15,786 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:15,787 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:15,787 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:15,787 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:15,787 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:15,787 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:15,788 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:15,788 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:15,788 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:15,788 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:15,788 #include "..." search starts here: 2021-07-15T22:13:15,789 #include <...> search starts here: 2021-07-15T22:13:15,789 /usr/include/eigen3 2021-07-15T22:13:15,789 include 2021-07-15T22:13:15,789 /usr/include/python3.9 2021-07-15T22:13:15,789 /usr/include/c++/10 2021-07-15T22:13:15,789 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:15,790 /usr/include/c++/10/backward 2021-07-15T22:13:15,790 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:15,790 /usr/local/include 2021-07-15T22:13:15,790 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:15,790 /usr/include 2021-07-15T22:13:15,790 End of search list. 2021-07-15T22:13:15,791 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:15,791 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:15,791 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:15,804 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:17,392 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:17,392 from include/openbabel/mol.h:43, 2021-07-15T22:13:17,392 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:17,392 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:13:17,392 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:17,393 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:17,393 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:17,393 | ^ 2021-07-15T22:13:17,393 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:17,393 37 | # define UNUSED(x) x 2021-07-15T22:13:17,393 | ^ 2021-07-15T22:13:18,192 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:18,192 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:18,192 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:13:18,192 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,193 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,193 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:18,193 | ^ 2021-07-15T22:13:18,193 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:18,193 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:18,194 | ^~~~~~~~ 2021-07-15T22:13:18,198 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,198 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,198 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:18,198 | ^ 2021-07-15T22:13:18,199 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:18,199 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:18,199 | ^~~~~~~~ 2021-07-15T22:13:18,218 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,218 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,219 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:18,219 | ^ 2021-07-15T22:13:18,219 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:18,219 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:18,219 | ^~~~~~~~ 2021-07-15T22:13:18,225 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:18,225 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:18,226 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:13:18,226 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,226 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,226 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:18,226 | ^ 2021-07-15T22:13:18,226 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:18,227 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:18,227 | ^~~~~~~~ 2021-07-15T22:13:18,556 ./src/formats/pwscfformat.cpp: In member function ‘virtual int OpenBabel::PWscfFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:13:18,556 ./src/formats/pwscfformat.cpp:51:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:13:18,556 51 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:13:18,556 | ~~~~^ 2021-07-15T22:13:18,557 ./src/formats/pwscfformat.cpp:51:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:13:18,557 51 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:13:18,557 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:13:22,126 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:22,126 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o /tmp/ccmo5kI3.s 2021-07-15T22:13:22,132 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:22,492 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:22,493 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:22,493 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:22,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/qchemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:22,504 Using built-in specs. 2021-07-15T22:13:22,505 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:22,505 Target: arm-linux-gnueabihf 2021-07-15T22:13:22,506 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:22,506 Thread model: posix 2021-07-15T22:13:22,506 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:22,506 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:22,506 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:22,507 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/qchemformat.cpp -quiet -dumpbase qchemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccvpayoj.s 2021-07-15T22:13:22,518 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:22,518 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:22,518 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:22,519 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:22,519 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:22,519 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:22,519 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:22,519 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:22,519 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:22,520 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:22,520 #include "..." search starts here: 2021-07-15T22:13:22,520 #include <...> search starts here: 2021-07-15T22:13:22,520 /usr/include/eigen3 2021-07-15T22:13:22,520 include 2021-07-15T22:13:22,521 /usr/include/python3.9 2021-07-15T22:13:22,521 /usr/include/c++/10 2021-07-15T22:13:22,521 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:22,521 /usr/include/c++/10/backward 2021-07-15T22:13:22,521 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:22,521 /usr/local/include 2021-07-15T22:13:22,522 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:22,522 /usr/include 2021-07-15T22:13:22,522 End of search list. 2021-07-15T22:13:22,522 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:22,522 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:22,523 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:22,535 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:24,112 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:24,113 from include/openbabel/mol.h:43, 2021-07-15T22:13:24,113 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:24,113 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:13:24,113 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:24,114 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:24,114 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:24,114 | ^ 2021-07-15T22:13:24,114 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:24,114 37 | # define UNUSED(x) x 2021-07-15T22:13:24,115 | ^ 2021-07-15T22:13:24,903 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:24,903 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:24,903 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:13:24,904 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:24,904 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:24,904 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:24,904 | ^ 2021-07-15T22:13:24,904 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:24,905 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:24,905 | ^~~~~~~~ 2021-07-15T22:13:24,907 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:24,908 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:24,908 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:24,908 | ^ 2021-07-15T22:13:24,908 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:24,908 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:24,909 | ^~~~~~~~ 2021-07-15T22:13:24,926 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:24,926 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:24,927 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:24,927 | ^ 2021-07-15T22:13:24,927 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:24,927 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:24,928 | ^~~~~~~~ 2021-07-15T22:13:24,932 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:24,932 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:24,932 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:13:24,932 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:24,933 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:24,933 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:24,933 | ^ 2021-07-15T22:13:24,933 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:24,934 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:24,934 | ^~~~~~~~ 2021-07-15T22:13:28,531 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:13:28,531 from include/openbabel/mol.h:35, 2021-07-15T22:13:28,532 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:28,532 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:13:28,532 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:13:28,532 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:28,533 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:13:28,533 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:28,585 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:13:28,585 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:29,479 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:29,480 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:29,480 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:29,480 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:29,481 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:29,481 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:29,481 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:29,483 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:29,483 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:29,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:29,484 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:29,484 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:29,484 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:29,484 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:29,485 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:29,485 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:30,904 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:30,905 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o /tmp/ccvpayoj.s 2021-07-15T22:13:30,910 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:31,403 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:31,404 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:31,404 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:31,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/reportformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/reportformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:31,415 Using built-in specs. 2021-07-15T22:13:31,416 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:31,416 Target: arm-linux-gnueabihf 2021-07-15T22:13:31,416 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:31,417 Thread model: posix 2021-07-15T22:13:31,417 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:31,417 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:31,418 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:31,418 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/reportformat.cpp -quiet -dumpbase reportformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/reportformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqSJ8Qx.s 2021-07-15T22:13:31,428 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:31,429 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:31,429 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:31,429 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:31,429 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:31,430 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:31,430 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:31,430 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:31,431 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:31,431 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:31,431 #include "..." search starts here: 2021-07-15T22:13:31,431 #include <...> search starts here: 2021-07-15T22:13:31,431 /usr/include/eigen3 2021-07-15T22:13:31,431 include 2021-07-15T22:13:31,432 /usr/include/python3.9 2021-07-15T22:13:31,432 /usr/include/c++/10 2021-07-15T22:13:31,432 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:31,432 /usr/include/c++/10/backward 2021-07-15T22:13:31,433 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:31,433 /usr/local/include 2021-07-15T22:13:31,433 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:31,433 /usr/include 2021-07-15T22:13:31,434 End of search list. 2021-07-15T22:13:31,434 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:31,434 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:31,434 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:31,446 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:33,051 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:33,051 from include/openbabel/mol.h:43, 2021-07-15T22:13:33,052 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:33,052 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:13:33,053 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:33,053 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:33,053 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:33,053 | ^ 2021-07-15T22:13:33,054 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:33,054 37 | # define UNUSED(x) x 2021-07-15T22:13:33,054 | ^ 2021-07-15T22:13:33,850 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:33,850 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:33,850 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:13:33,851 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:33,851 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:33,851 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:33,852 | ^ 2021-07-15T22:13:33,852 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:33,852 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:33,853 | ^~~~~~~~ 2021-07-15T22:13:33,854 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:33,855 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:33,855 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:33,855 | ^ 2021-07-15T22:13:33,856 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:33,856 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:33,856 | ^~~~~~~~ 2021-07-15T22:13:33,874 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:33,874 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:33,874 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:33,875 | ^ 2021-07-15T22:13:33,875 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:33,875 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:33,876 | ^~~~~~~~ 2021-07-15T22:13:33,880 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:33,880 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:33,880 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:13:33,880 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:33,881 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:33,881 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:33,881 | ^ 2021-07-15T22:13:33,882 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:33,882 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:33,882 | ^~~~~~~~ 2021-07-15T22:13:37,168 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:37,169 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/reportformat.o /tmp/ccqSJ8Qx.s 2021-07-15T22:13:37,176 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:37,480 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:37,480 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:37,480 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:37,482 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/rsmiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:37,492 Using built-in specs. 2021-07-15T22:13:37,493 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:37,493 Target: arm-linux-gnueabihf 2021-07-15T22:13:37,494 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:37,494 Thread model: posix 2021-07-15T22:13:37,494 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:37,494 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:37,495 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:37,498 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/rsmiformat.cpp -quiet -dumpbase rsmiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cczVblvP.s 2021-07-15T22:13:37,512 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:37,513 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:37,513 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:37,514 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:37,514 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:37,514 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:37,514 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:37,515 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:37,515 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:37,515 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:37,515 #include "..." search starts here: 2021-07-15T22:13:37,516 #include <...> search starts here: 2021-07-15T22:13:37,516 /usr/include/eigen3 2021-07-15T22:13:37,516 include 2021-07-15T22:13:37,516 /usr/include/python3.9 2021-07-15T22:13:37,516 /usr/include/c++/10 2021-07-15T22:13:37,516 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:37,517 /usr/include/c++/10/backward 2021-07-15T22:13:37,517 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:37,517 /usr/local/include 2021-07-15T22:13:37,517 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:37,517 /usr/include 2021-07-15T22:13:37,517 End of search list. 2021-07-15T22:13:37,518 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:37,518 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:37,518 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:37,533 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:39,688 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:39,689 from include/openbabel/mol.h:43, 2021-07-15T22:13:39,689 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:13:39,689 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:39,689 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:39,690 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:39,690 | ^ 2021-07-15T22:13:39,690 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:39,690 37 | # define UNUSED(x) x 2021-07-15T22:13:39,691 | ^ 2021-07-15T22:13:40,673 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:40,673 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:13:40,673 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:40,674 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:40,674 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:40,674 | ^ 2021-07-15T22:13:40,674 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:40,674 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:40,675 | ^~~~~~~~ 2021-07-15T22:13:40,678 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:40,679 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:40,679 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:40,679 | ^ 2021-07-15T22:13:40,679 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:40,680 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:40,680 | ^~~~~~~~ 2021-07-15T22:13:40,702 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:40,702 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:40,702 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:40,703 | ^ 2021-07-15T22:13:40,703 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:40,703 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:40,703 | ^~~~~~~~ 2021-07-15T22:13:40,709 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:40,709 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:13:40,709 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:40,709 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:40,710 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:40,710 | ^ 2021-07-15T22:13:40,710 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:40,710 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:40,710 | ^~~~~~~~ 2021-07-15T22:13:48,226 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:48,227 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o /tmp/cczVblvP.s 2021-07-15T22:13:48,232 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:48,812 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:48,812 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:48,813 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:48,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/rxnformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:48,828 Using built-in specs. 2021-07-15T22:13:48,829 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:48,829 Target: arm-linux-gnueabihf 2021-07-15T22:13:48,830 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:48,830 Thread model: posix 2021-07-15T22:13:48,830 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:48,830 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:48,831 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:48,831 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/rxnformat.cpp -quiet -dumpbase rxnformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc53vEf5.s 2021-07-15T22:13:48,843 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:48,844 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:48,844 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:48,845 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:48,845 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:48,846 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:48,846 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:48,846 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:48,846 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:48,846 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:48,847 #include "..." search starts here: 2021-07-15T22:13:48,847 #include <...> search starts here: 2021-07-15T22:13:48,847 /usr/include/eigen3 2021-07-15T22:13:48,847 include 2021-07-15T22:13:48,847 /usr/include/python3.9 2021-07-15T22:13:48,847 /usr/include/c++/10 2021-07-15T22:13:48,848 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:48,848 /usr/include/c++/10/backward 2021-07-15T22:13:48,848 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:48,848 /usr/local/include 2021-07-15T22:13:48,848 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:48,849 /usr/include 2021-07-15T22:13:48,849 End of search list. 2021-07-15T22:13:48,849 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:48,849 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:48,850 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:48,861 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:50,561 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:50,561 from include/openbabel/mol.h:43, 2021-07-15T22:13:50,561 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:13:50,562 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:50,562 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:50,562 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:50,562 | ^ 2021-07-15T22:13:50,563 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:50,563 37 | # define UNUSED(x) x 2021-07-15T22:13:50,563 | ^ 2021-07-15T22:13:51,350 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:51,350 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:13:51,351 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:51,351 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:51,351 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:51,351 | ^ 2021-07-15T22:13:51,351 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:51,352 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:51,352 | ^~~~~~~~ 2021-07-15T22:13:51,354 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:51,355 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:51,355 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:51,355 | ^ 2021-07-15T22:13:51,356 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:51,356 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:51,356 | ^~~~~~~~ 2021-07-15T22:13:51,373 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:51,374 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:51,374 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:51,374 | ^ 2021-07-15T22:13:51,375 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:51,375 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:51,375 | ^~~~~~~~ 2021-07-15T22:13:51,379 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:51,380 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:13:51,380 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:51,380 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:51,380 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:51,380 | ^ 2021-07-15T22:13:51,381 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:51,381 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:51,381 | ^~~~~~~~ 2021-07-15T22:13:51,866 ./src/formats/rxnformat.cpp: In member function ‘virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:51,866 ./src/formats/rxnformat.cpp:228:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:13:51,866 228 | for(i=0;iNumReactants();i++) 2021-07-15T22:13:51,867 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:51,867 ./src/formats/rxnformat.cpp:235:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:13:51,868 235 | for(i=0;iNumProducts();i++) 2021-07-15T22:13:51,868 | ~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:56,200 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:56,201 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o /tmp/cc53vEf5.s 2021-07-15T22:13:56,207 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:56,635 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:56,636 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:56,636 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:56,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/shelxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:56,650 Using built-in specs. 2021-07-15T22:13:56,652 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:56,652 Target: arm-linux-gnueabihf 2021-07-15T22:13:56,652 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:56,652 Thread model: posix 2021-07-15T22:13:56,652 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:56,653 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:56,653 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:56,653 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/shelxformat.cpp -quiet -dumpbase shelxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccX7vplj.s 2021-07-15T22:13:56,664 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:56,665 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:56,665 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:56,666 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:56,666 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:56,667 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:56,667 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:56,667 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:56,667 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:56,667 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:56,668 #include "..." search starts here: 2021-07-15T22:13:56,668 #include <...> search starts here: 2021-07-15T22:13:56,668 /usr/include/eigen3 2021-07-15T22:13:56,668 include 2021-07-15T22:13:56,668 /usr/include/python3.9 2021-07-15T22:13:56,668 /usr/include/c++/10 2021-07-15T22:13:56,669 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:56,669 /usr/include/c++/10/backward 2021-07-15T22:13:56,669 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:56,669 /usr/local/include 2021-07-15T22:13:56,669 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:56,669 /usr/include 2021-07-15T22:13:56,670 End of search list. 2021-07-15T22:13:56,670 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:56,670 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:56,670 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:56,683 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:58,331 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:58,331 from include/openbabel/mol.h:43, 2021-07-15T22:13:58,332 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:58,332 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:13:58,332 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:58,332 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:58,333 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:58,333 | ^ 2021-07-15T22:13:58,333 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:58,333 37 | # define UNUSED(x) x 2021-07-15T22:13:58,333 | ^ 2021-07-15T22:13:59,032 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:59,032 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:59,033 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:13:59,033 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:59,033 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:59,033 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:59,033 | ^ 2021-07-15T22:13:59,034 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:59,034 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:59,034 | ^~~~~~~~ 2021-07-15T22:13:59,037 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:59,037 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:59,037 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:59,037 | ^ 2021-07-15T22:13:59,038 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:59,038 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:59,038 | ^~~~~~~~ 2021-07-15T22:13:59,056 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:59,056 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:59,056 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:59,056 | ^ 2021-07-15T22:13:59,057 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:59,057 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:59,057 | ^~~~~~~~ 2021-07-15T22:13:59,061 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:59,061 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:59,062 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:13:59,062 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:59,062 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:59,062 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:59,063 | ^ 2021-07-15T22:13:59,063 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:59,063 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:59,063 | ^~~~~~~~ 2021-07-15T22:14:02,056 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:02,056 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o /tmp/ccX7vplj.s 2021-07-15T22:14:02,062 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:02,289 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:02,290 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:02,290 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:02,294 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/siestaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:02,300 Using built-in specs. 2021-07-15T22:14:02,301 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:02,301 Target: arm-linux-gnueabihf 2021-07-15T22:14:02,301 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:02,301 Thread model: posix 2021-07-15T22:14:02,302 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:02,302 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:02,302 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:02,302 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/siestaformat.cpp -quiet -dumpbase siestaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccoPdZsP.s 2021-07-15T22:14:02,314 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:02,314 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:02,315 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:02,315 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:02,315 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:02,315 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:02,315 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:02,316 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:02,316 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:02,316 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:02,317 #include "..." search starts here: 2021-07-15T22:14:02,317 #include <...> search starts here: 2021-07-15T22:14:02,317 /usr/include/eigen3 2021-07-15T22:14:02,317 include 2021-07-15T22:14:02,317 /usr/include/python3.9 2021-07-15T22:14:02,318 /usr/include/c++/10 2021-07-15T22:14:02,318 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:02,318 /usr/include/c++/10/backward 2021-07-15T22:14:02,318 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:02,319 /usr/local/include 2021-07-15T22:14:02,319 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:02,319 /usr/include 2021-07-15T22:14:02,320 End of search list. 2021-07-15T22:14:02,320 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:02,320 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:02,320 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:02,333 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:03,920 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:03,920 from include/openbabel/mol.h:43, 2021-07-15T22:14:03,921 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:03,921 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:14:03,921 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:03,921 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:03,922 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:03,922 | ^ 2021-07-15T22:14:03,922 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:03,923 37 | # define UNUSED(x) x 2021-07-15T22:14:03,923 | ^ 2021-07-15T22:14:04,718 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:04,718 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:04,718 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:14:04,719 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:04,719 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:04,719 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:04,720 | ^ 2021-07-15T22:14:04,720 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:04,720 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:04,720 | ^~~~~~~~ 2021-07-15T22:14:04,722 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:04,723 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:04,723 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:04,723 | ^ 2021-07-15T22:14:04,724 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:04,724 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:04,724 | ^~~~~~~~ 2021-07-15T22:14:04,741 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:04,742 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:04,742 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:04,742 | ^ 2021-07-15T22:14:04,743 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:04,743 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:04,743 | ^~~~~~~~ 2021-07-15T22:14:04,747 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:04,748 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:04,748 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:14:04,748 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:04,748 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:04,749 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:04,749 | ^ 2021-07-15T22:14:04,749 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:04,750 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:04,750 | ^~~~~~~~ 2021-07-15T22:14:05,078 ./src/formats/siestaformat.cpp: In member function ‘virtual int OpenBabel::SIESTAFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:14:05,078 ./src/formats/siestaformat.cpp:49:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:14:05,079 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:05,079 | ~~~~^ 2021-07-15T22:14:05,079 ./src/formats/siestaformat.cpp:49:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:05,080 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:05,080 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:05,148 ./src/formats/siestaformat.cpp: In member function ‘virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:05,148 ./src/formats/siestaformat.cpp:82:10: warning: variable ‘coordsAreAngstrom’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:14:05,149 82 | bool coordsAreAngstrom = false; 2021-07-15T22:14:05,149 | ^~~~~~~~~~~~~~~~~ 2021-07-15T22:14:05,149 ./src/formats/siestaformat.cpp:88:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:14:05,149 88 | size_t size; 2021-07-15T22:14:05,150 | ^~~~ 2021-07-15T22:14:05,150 ./src/formats/siestaformat.cpp:92:30: warning: unused variable ‘numSpecies’ [-Wunused-variable] 2021-07-15T22:14:05,150 92 | int atomicNum, numAtoms, numSpecies; 2021-07-15T22:14:05,150 | ^~~~~~~~~~ 2021-07-15T22:14:11,140 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:11,141 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o /tmp/ccoPdZsP.s 2021-07-15T22:14:11,156 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:11,641 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:11,641 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:11,642 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:11,645 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/smileyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:11,653 Using built-in specs. 2021-07-15T22:14:11,654 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:11,655 Target: arm-linux-gnueabihf 2021-07-15T22:14:11,655 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:11,655 Thread model: posix 2021-07-15T22:14:11,655 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:11,656 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:11,657 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:11,659 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/smileyformat.cpp -quiet -dumpbase smileyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4o7BA3.s 2021-07-15T22:14:11,670 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:11,670 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:11,671 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:11,671 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:11,671 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:11,671 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:11,671 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:11,672 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:11,672 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:11,672 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:11,672 #include "..." search starts here: 2021-07-15T22:14:11,672 #include <...> search starts here: 2021-07-15T22:14:11,672 /usr/include/eigen3 2021-07-15T22:14:11,673 include 2021-07-15T22:14:11,673 /usr/include/python3.9 2021-07-15T22:14:11,673 /usr/include/c++/10 2021-07-15T22:14:11,673 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:11,673 /usr/include/c++/10/backward 2021-07-15T22:14:11,673 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:11,674 /usr/local/include 2021-07-15T22:14:11,674 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:11,674 /usr/include 2021-07-15T22:14:11,674 End of search list. 2021-07-15T22:14:11,674 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:11,674 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:11,675 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:11,687 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:13,284 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:13,285 from include/openbabel/mol.h:43, 2021-07-15T22:14:13,285 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:13,285 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:14:13,285 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:13,286 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:13,286 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:13,286 | ^ 2021-07-15T22:14:13,286 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:13,287 37 | # define UNUSED(x) x 2021-07-15T22:14:13,287 | ^ 2021-07-15T22:14:14,084 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:14,085 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:14,085 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:14:14,085 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:14,085 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:14,085 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:14,086 | ^ 2021-07-15T22:14:14,086 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:14,086 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:14,086 | ^~~~~~~~ 2021-07-15T22:14:14,089 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:14,089 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:14,089 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:14,090 | ^ 2021-07-15T22:14:14,090 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:14,090 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:14,090 | ^~~~~~~~ 2021-07-15T22:14:14,108 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:14,108 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:14,108 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:14,109 | ^ 2021-07-15T22:14:14,109 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:14,109 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:14,109 | ^~~~~~~~ 2021-07-15T22:14:14,114 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:14,114 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:14,114 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:14:14,114 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:14,114 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:14,115 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:14,115 | ^ 2021-07-15T22:14:14,115 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:14,115 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:14,116 | ^~~~~~~~ 2021-07-15T22:14:14,595 In file included from ./src/formats/smileyformat.cpp:20: 2021-07-15T22:14:14,595 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::setChiral(int, Smiley::Chirality, const std::vector&)’: 2021-07-15T22:14:14,596 include/formats/smiley.h:649:24: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:14:14,596 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:14:14,596 | ~~~~^~~~~ 2021-07-15T22:14:14,596 include/formats/smiley.h:649:41: warning: unused parameter ‘chirality’ [-Wunused-parameter] 2021-07-15T22:14:14,596 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:14:14,597 | ~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:14:14,597 include/formats/smiley.h:649:76: warning: unused parameter ‘chiralNbrs’ [-Wunused-parameter] 2021-07-15T22:14:14,597 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:14:14,597 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:14:14,598 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addAtom(int, bool, int, int, int, int)’: 2021-07-15T22:14:14,598 include/formats/smiley.h:655:22: warning: unused parameter ‘element’ [-Wunused-parameter] 2021-07-15T22:14:14,598 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,598 | ~~~~^~~~~~~ 2021-07-15T22:14:14,598 include/formats/smiley.h:655:36: warning: unused parameter ‘aromatic’ [-Wunused-parameter] 2021-07-15T22:14:14,599 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,599 | ~~~~~^~~~~~~~ 2021-07-15T22:14:14,599 include/formats/smiley.h:655:50: warning: unused parameter ‘isotope’ [-Wunused-parameter] 2021-07-15T22:14:14,599 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,599 | ~~~~^~~~~~~ 2021-07-15T22:14:14,600 include/formats/smiley.h:655:63: warning: unused parameter ‘hCount’ [-Wunused-parameter] 2021-07-15T22:14:14,600 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,600 | ~~~~^~~~~~ 2021-07-15T22:14:14,600 include/formats/smiley.h:655:75: warning: unused parameter ‘charge’ [-Wunused-parameter] 2021-07-15T22:14:14,601 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,601 | ~~~~^~~~~~ 2021-07-15T22:14:14,601 include/formats/smiley.h:655:87: warning: unused parameter ‘atomClass’ [-Wunused-parameter] 2021-07-15T22:14:14,601 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:14:14,601 | ~~~~^~~~~~~~~ 2021-07-15T22:14:14,602 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addBond(int, int, int, bool, bool)’: 2021-07-15T22:14:14,602 include/formats/smiley.h:659:22: warning: unused parameter ‘source’ [-Wunused-parameter] 2021-07-15T22:14:14,602 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:14:14,602 | ~~~~^~~~~~ 2021-07-15T22:14:14,603 include/formats/smiley.h:659:34: warning: unused parameter ‘target’ [-Wunused-parameter] 2021-07-15T22:14:14,603 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:14:14,603 | ~~~~^~~~~~ 2021-07-15T22:14:14,603 include/formats/smiley.h:659:46: warning: unused parameter ‘order’ [-Wunused-parameter] 2021-07-15T22:14:14,603 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:14:14,604 | ~~~~^~~~~ 2021-07-15T22:14:14,604 include/formats/smiley.h:659:58: warning: unused parameter ‘isUp’ [-Wunused-parameter] 2021-07-15T22:14:14,604 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:14:14,604 | ~~~~~^~~~ 2021-07-15T22:14:14,605 include/formats/smiley.h:659:69: warning: unused parameter ‘isDown’ [-Wunused-parameter] 2021-07-15T22:14:14,605 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:14:14,605 | ~~~~~^~~~~~ 2021-07-15T22:14:14,605 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::operation(int)’: 2021-07-15T22:14:14,605 include/formats/smiley.h:667:24: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:14:14,606 667 | void operation(int type) {} 2021-07-15T22:14:14,606 | ~~~~^~~~ 2021-07-15T22:14:14,606 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addOrganicSubsetAtom(int, bool)’: 2021-07-15T22:14:14,606 include/formats/smiley.h:671:35: warning: unused parameter ‘element’ [-Wunused-parameter] 2021-07-15T22:14:14,606 671 | void addOrganicSubsetAtom(int element, bool aromatic) {} 2021-07-15T22:14:14,607 | ~~~~^~~~~~~ 2021-07-15T22:14:14,607 include/formats/smiley.h:671:49: warning: unused parameter ‘aromatic’ [-Wunused-parameter] 2021-07-15T22:14:14,607 671 | void addOrganicSubsetAtom(int element, bool aromatic) {} 2021-07-15T22:14:14,607 | ~~~~~^~~~~~~~ 2021-07-15T22:14:14,608 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::atomPrimitive(int, int)’: 2021-07-15T22:14:14,608 include/formats/smiley.h:675:28: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:14:14,608 675 | void atomPrimitive(int type, int value) {} 2021-07-15T22:14:14,608 | ~~~~^~~~ 2021-07-15T22:14:14,608 include/formats/smiley.h:675:38: warning: unused parameter ‘value’ [-Wunused-parameter] 2021-07-15T22:14:14,609 675 | void atomPrimitive(int type, int value) {} 2021-07-15T22:14:14,609 | ~~~~^~~~~ 2021-07-15T22:14:14,609 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::bondPrimitive(int)’: 2021-07-15T22:14:14,609 include/formats/smiley.h:680:28: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:14:14,610 680 | void bondPrimitive(int type) {} 2021-07-15T22:14:14,610 | ~~~~^~~~ 2021-07-15T22:14:14,610 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::setPrevious(int)’: 2021-07-15T22:14:14,610 include/formats/smiley.h:685:26: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:14:14,610 685 | void setPrevious(int index) {} 2021-07-15T22:14:14,611 | ~~~~^~~~~ 2021-07-15T22:14:14,611 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::startRingBond(int)’: 2021-07-15T22:14:14,611 include/formats/smiley.h:689:28: warning: unused parameter ‘number’ [-Wunused-parameter] 2021-07-15T22:14:14,611 689 | void startRingBond(int number) {} 2021-07-15T22:14:14,612 | ~~~~^~~~~~ 2021-07-15T22:14:14,612 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::endRingBond(int, int)’: 2021-07-15T22:14:14,612 include/formats/smiley.h:693:26: warning: unused parameter ‘number’ [-Wunused-parameter] 2021-07-15T22:14:14,612 693 | void endRingBond(int number, int index) {} 2021-07-15T22:14:14,612 | ~~~~^~~~~~ 2021-07-15T22:14:14,613 include/formats/smiley.h:693:38: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:14:14,613 693 | void endRingBond(int number, int index) {} 2021-07-15T22:14:14,613 | ~~~~^~~~~ 2021-07-15T22:14:14,719 ./src/formats/smileyformat.cpp: In member function ‘void OpenBabel::OpenBabelCallback::addAtom(int, bool, int, int, int, int)’: 2021-07-15T22:14:14,719 ./src/formats/smileyformat.cpp:58:87: warning: unused parameter ‘atomClass’ [-Wunused-parameter] 2021-07-15T22:14:14,720 58 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) 2021-07-15T22:14:14,720 | ~~~~^~~~~~~~~ 2021-07-15T22:14:14,723 ./src/formats/smileyformat.cpp: In member function ‘void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)’: 2021-07-15T22:14:14,723 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘NotChiral’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,723 153 | switch (chirality) { 2021-07-15T22:14:14,724 | ^ 2021-07-15T22:14:14,724 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TH1’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,724 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TH2’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,724 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘AL1’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,724 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘AL2’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,725 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP1’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,725 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP2’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,725 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP3’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,725 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB1’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,726 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB2’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,726 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB3’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,726 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB4’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,726 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB5’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,727 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB6’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,727 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB7’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,727 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB8’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,727 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB9’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,728 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB10’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,728 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB11’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,728 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB12’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,728 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB13’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,729 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB14’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,729 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB15’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,729 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB16’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,729 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB17’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,730 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB18’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,730 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB19’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,730 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB20’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,730 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH1’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,730 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH2’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,731 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH3’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,731 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH4’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,731 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH5’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,731 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH6’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,731 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH7’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,732 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH8’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,732 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH9’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,732 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH10’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,732 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH11’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,732 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH12’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH13’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH14’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH15’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH16’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH17’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,733 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH18’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,734 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH19’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,734 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH20’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,734 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH21’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,734 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH22’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,735 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH23’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,735 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH24’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,735 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH25’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,735 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH26’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,735 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH27’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,736 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH28’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,736 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH29’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,736 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH30’ not handled in switch [-Wswitch] 2021-07-15T22:14:14,786 ./src/formats/smileyformat.cpp: In member function ‘bool OpenBabel::SmileyFormat::AssignNbrAtoms(const std::vector&, OpenBabel::OBAtom*, long unsigned int&, long unsigned int&)’: 2021-07-15T22:14:14,786 ./src/formats/smileyformat.cpp:457:21: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:14:14,787 457 | aboveId = above ? above->GetId() : OBStereo::ImplicitRef; 2021-07-15T22:14:14,787 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:14,787 ./src/formats/smileyformat.cpp:458:21: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:14:14,787 458 | belowId = below ? below->GetId() : OBStereo::ImplicitRef; 2021-07-15T22:14:14,788 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:15,437 In file included from ./src/formats/smileyformat.cpp:20: 2021-07-15T22:14:15,437 include/formats/smiley.h: In instantiation of ‘void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]’: 2021-07-15T22:14:15,438 include/formats/smiley.h:2707:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:14:15,438 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:14:15,438 include/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:14:15,438 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) 2021-07-15T22:14:15,438 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:16,153 include/formats/smiley.h: In instantiation of ‘Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]’: 2021-07-15T22:14:16,153 include/formats/smiley.h:2409:41: required from ‘void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]’ 2021-07-15T22:14:16,153 include/formats/smiley.h:2429:11: required from ‘void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,153 include/formats/smiley.h:2507:13: required from ‘void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,154 include/formats/smiley.h:2698:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:14:16,154 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:14:16,154 include/formats/smiley.h:986:14: warning: ‘Smiley::Parser::RingBondInfo::isExplicit’ will be initialized after [-Wreorder] 2021-07-15T22:14:16,154 986 | bool isExplicit; 2021-07-15T22:14:16,155 | ^~~~~~~~~~ 2021-07-15T22:14:16,155 include/formats/smiley.h:981:21: warning: ‘std::size_t Smiley::Parser::RingBondInfo::pos’ [-Wreorder] 2021-07-15T22:14:16,155 981 | std::size_t pos; 2021-07-15T22:14:16,155 | ^~~ 2021-07-15T22:14:16,156 include/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 2021-07-15T22:14:16,156 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, 2021-07-15T22:14:16,156 | ^~~~~~~~~~~~ 2021-07-15T22:14:16,238 include/formats/smiley.h: In instantiation of ‘bool Smiley::Parser::parseCharNumber(char, int, int&, bool, bool) [with Callback = OpenBabel::OpenBabelCallback]’: 2021-07-15T22:14:16,238 include/formats/smiley.h:1988:15: required from ‘void Smiley::Parser::parseAtomExpr() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,238 include/formats/smiley.h:2092:11: required from ‘void Smiley::Parser::parseBracketAtom() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,239 include/formats/smiley.h:2217:13: required from ‘bool Smiley::Parser::parseAtom() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,239 include/formats/smiley.h:2495:16: required from ‘void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:14:16,239 include/formats/smiley.h:2698:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:14:16,239 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:14:16,239 include/formats/smiley.h:1774:37: warning: unused parameter ‘noDefault’ [-Wunused-parameter] 2021-07-15T22:14:16,240 1774 | bool firstPrimitive, bool noDefault = false) 2021-07-15T22:14:16,240 | ~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:14:24,752 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:24,752 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o /tmp/cc4o7BA3.s 2021-07-15T22:14:24,757 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:25,622 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:25,623 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:25,623 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:25,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/stlformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/stlformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:25,639 Using built-in specs. 2021-07-15T22:14:25,640 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:25,640 Target: arm-linux-gnueabihf 2021-07-15T22:14:25,641 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:25,641 Thread model: posix 2021-07-15T22:14:25,641 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:25,641 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:25,641 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:25,642 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/stlformat.cpp -quiet -dumpbase stlformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/stlformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccyq3Owf.s 2021-07-15T22:14:25,656 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:25,656 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:25,656 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:25,657 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:25,657 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:25,657 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:25,657 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:25,657 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:25,658 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:25,658 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:25,658 #include "..." search starts here: 2021-07-15T22:14:25,658 #include <...> search starts here: 2021-07-15T22:14:25,658 /usr/include/eigen3 2021-07-15T22:14:25,659 include 2021-07-15T22:14:25,659 /usr/include/python3.9 2021-07-15T22:14:25,659 /usr/include/c++/10 2021-07-15T22:14:25,659 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:25,659 /usr/include/c++/10/backward 2021-07-15T22:14:25,659 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:25,659 /usr/local/include 2021-07-15T22:14:25,660 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:25,660 /usr/include 2021-07-15T22:14:25,660 End of search list. 2021-07-15T22:14:25,660 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:25,660 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:25,661 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:25,676 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:27,599 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:27,599 from include/openbabel/mol.h:43, 2021-07-15T22:14:27,600 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:14:27,600 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:27,600 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:27,600 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:27,601 | ^ 2021-07-15T22:14:27,601 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:27,601 37 | # define UNUSED(x) x 2021-07-15T22:14:27,601 | ^ 2021-07-15T22:14:28,575 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:28,575 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:14:28,575 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,575 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,576 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:28,576 | ^ 2021-07-15T22:14:28,576 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:28,576 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:28,576 | ^~~~~~~~ 2021-07-15T22:14:28,585 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,585 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,586 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:28,586 | ^ 2021-07-15T22:14:28,586 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:28,586 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:28,586 | ^~~~~~~~ 2021-07-15T22:14:28,603 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,603 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,603 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:28,603 | ^ 2021-07-15T22:14:28,604 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:28,604 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:28,604 | ^~~~~~~~ 2021-07-15T22:14:28,611 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:28,611 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:14:28,612 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,612 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,612 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:28,612 | ^ 2021-07-15T22:14:28,613 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:28,613 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:28,613 | ^~~~~~~~ 2021-07-15T22:14:29,020 ./src/formats/stlformat.cpp: In member function ‘virtual int OpenBabel::STLFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:14:29,021 ./src/formats/stlformat.cpp:95:36: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:14:29,021 95 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:14:29,021 | ~~~~^ 2021-07-15T22:14:29,021 ./src/formats/stlformat.cpp:95:64: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:29,022 95 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:14:29,022 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:29,044 ./src/formats/stlformat.cpp: In function ‘void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)’: 2021-07-15T22:14:29,044 ./src/formats/stlformat.cpp:149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:29,045 149 | for( int i=0 ; i < points.size()-2; i++ ) { 2021-07-15T22:14:29,045 | ~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,354 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:14:31,355 from include/openbabel/mol.h:35, 2021-07-15T22:14:31,355 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:14:31,355 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:14:31,356 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:14:31,356 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:14:31,356 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,437 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::Triangle}; _Tp = OpenBabel::Triangle; _Alloc = std::allocator]’: 2021-07-15T22:14:31,438 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:14:31,552 /usr/include/c++/10/bits/vector.tcc: In function ‘void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)’: 2021-07-15T22:14:31,553 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:31,553 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:31,553 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,554 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:31,554 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:31,554 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,555 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:31,556 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:31,556 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,557 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:31,557 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:31,557 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:31,954 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:31,954 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/stlformat.o /tmp/ccyq3Owf.s 2021-07-15T22:14:31,960 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:32,194 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:32,194 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:32,194 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:32,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/svgformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/svgformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:32,205 Using built-in specs. 2021-07-15T22:14:32,207 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:32,207 Target: arm-linux-gnueabihf 2021-07-15T22:14:32,207 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:32,207 Thread model: posix 2021-07-15T22:14:32,208 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:32,208 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:32,209 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:32,211 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/svgformat.cpp -quiet -dumpbase svgformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/svgformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccuBjGGu.s 2021-07-15T22:14:32,224 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:32,225 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:32,225 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:32,226 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:32,227 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:32,227 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:32,227 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:32,227 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:32,228 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:32,228 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:32,228 #include "..." search starts here: 2021-07-15T22:14:32,229 #include <...> search starts here: 2021-07-15T22:14:32,229 /usr/include/eigen3 2021-07-15T22:14:32,229 include 2021-07-15T22:14:32,229 /usr/include/python3.9 2021-07-15T22:14:32,229 /usr/include/c++/10 2021-07-15T22:14:32,230 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:32,230 /usr/include/c++/10/backward 2021-07-15T22:14:32,230 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:32,230 /usr/local/include 2021-07-15T22:14:32,231 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:32,231 /usr/include 2021-07-15T22:14:32,231 End of search list. 2021-07-15T22:14:32,232 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:32,233 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:32,234 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:32,249 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:33,857 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:33,857 from include/openbabel/mol.h:43, 2021-07-15T22:14:33,857 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:33,857 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:14:33,857 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:33,858 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:33,858 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:33,858 | ^ 2021-07-15T22:14:33,858 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:33,858 37 | # define UNUSED(x) x 2021-07-15T22:14:33,858 | ^ 2021-07-15T22:14:34,649 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:34,650 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:34,650 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:14:34,650 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:34,650 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:34,650 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:34,650 | ^ 2021-07-15T22:14:34,651 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:34,651 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:34,651 | ^~~~~~~~ 2021-07-15T22:14:34,655 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:34,656 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:34,656 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:34,656 | ^ 2021-07-15T22:14:34,656 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:34,656 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:34,657 | ^~~~~~~~ 2021-07-15T22:14:34,675 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:34,676 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:34,676 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:34,676 | ^ 2021-07-15T22:14:34,676 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:34,677 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:34,677 | ^~~~~~~~ 2021-07-15T22:14:34,682 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:34,683 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:34,683 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:14:34,683 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:34,683 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:34,683 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:34,683 | ^ 2021-07-15T22:14:34,684 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:34,684 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:34,684 | ^~~~~~~~ 2021-07-15T22:14:35,301 ./src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: 2021-07-15T22:14:35,301 ./src/formats/svgformat.cpp:222:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:14:35,301 222 | bool nomore = _nmax && (_objects.size()==_nmax); 2021-07-15T22:14:35,301 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:14:35,306 ./src/formats/svgformat.cpp:244:18: warning: unused variable ‘n’ [-Wunused-variable] 2021-07-15T22:14:35,306 244 | unsigned int n=0; 2021-07-15T22:14:35,306 | ^ 2021-07-15T22:14:35,308 ./src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:35,308 ./src/formats/svgformat.cpp:269:8: warning: unused variable ‘ret’ [-Wunused-variable] 2021-07-15T22:14:35,308 269 | bool ret = WriteSVG(pConv,_objects); 2021-07-15T22:14:35,309 | ^~~ 2021-07-15T22:14:40,512 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:40,513 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/svgformat.o /tmp/ccuBjGGu.s 2021-07-15T22:14:40,520 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:40,957 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:40,957 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:40,957 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:40,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/textformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/textformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:40,968 Using built-in specs. 2021-07-15T22:14:40,970 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:40,970 Target: arm-linux-gnueabihf 2021-07-15T22:14:40,971 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:40,971 Thread model: posix 2021-07-15T22:14:40,971 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:40,972 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:40,973 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:40,976 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/textformat.cpp -quiet -dumpbase textformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/textformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBKRn4T.s 2021-07-15T22:14:40,989 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:40,990 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:40,990 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:40,992 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:40,992 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:40,993 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:40,993 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:40,993 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:40,993 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:40,994 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:40,994 #include "..." search starts here: 2021-07-15T22:14:40,994 #include <...> search starts here: 2021-07-15T22:14:40,995 /usr/include/eigen3 2021-07-15T22:14:40,995 include 2021-07-15T22:14:40,995 /usr/include/python3.9 2021-07-15T22:14:40,996 /usr/include/c++/10 2021-07-15T22:14:40,996 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:40,996 /usr/include/c++/10/backward 2021-07-15T22:14:40,996 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:40,997 /usr/local/include 2021-07-15T22:14:40,997 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:40,997 /usr/include 2021-07-15T22:14:40,997 End of search list. 2021-07-15T22:14:41,005 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:41,005 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:41,006 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:41,013 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:42,614 In file included from include/openbabel/text.h:23, 2021-07-15T22:14:42,614 from ./src/formats/textformat.cpp:15: 2021-07-15T22:14:42,615 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:42,615 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:42,615 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:42,615 | ^ 2021-07-15T22:14:42,615 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:42,616 37 | # define UNUSED(x) x 2021-07-15T22:14:42,616 | ^ 2021-07-15T22:14:43,983 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:43,983 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/textformat.o /tmp/ccBKRn4T.s 2021-07-15T22:14:43,988 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:44,151 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:44,151 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:44,152 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:44,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/thermoformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:44,162 Using built-in specs. 2021-07-15T22:14:44,164 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:44,164 Target: arm-linux-gnueabihf 2021-07-15T22:14:44,164 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:44,165 Thread model: posix 2021-07-15T22:14:44,165 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:44,165 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:44,166 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:44,169 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/thermoformat.cpp -quiet -dumpbase thermoformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccxgtEP7.s 2021-07-15T22:14:44,182 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:44,182 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:44,183 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:44,184 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:44,184 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:44,185 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:44,185 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:44,185 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:44,185 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:44,186 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:44,186 #include "..." search starts here: 2021-07-15T22:14:44,186 #include <...> search starts here: 2021-07-15T22:14:44,186 /usr/include/eigen3 2021-07-15T22:14:44,187 include 2021-07-15T22:14:44,187 /usr/include/python3.9 2021-07-15T22:14:44,187 /usr/include/c++/10 2021-07-15T22:14:44,187 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:44,188 /usr/include/c++/10/backward 2021-07-15T22:14:44,188 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:44,188 /usr/local/include 2021-07-15T22:14:44,188 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:44,189 /usr/include 2021-07-15T22:14:44,189 End of search list. 2021-07-15T22:14:44,195 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:44,195 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:44,196 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:44,205 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:45,931 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:45,932 from include/openbabel/mol.h:43, 2021-07-15T22:14:45,932 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:45,932 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:14:45,932 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:45,933 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:45,933 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:45,933 | ^ 2021-07-15T22:14:45,933 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:45,933 37 | # define UNUSED(x) x 2021-07-15T22:14:45,934 | ^ 2021-07-15T22:14:46,778 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:46,779 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:46,779 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:14:46,779 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:46,779 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:46,780 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:46,780 | ^ 2021-07-15T22:14:46,780 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:46,780 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:46,781 | ^~~~~~~~ 2021-07-15T22:14:46,783 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:46,783 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:46,784 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:46,784 | ^ 2021-07-15T22:14:46,784 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:46,784 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:46,784 | ^~~~~~~~ 2021-07-15T22:14:46,802 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:46,802 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:46,803 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:46,803 | ^ 2021-07-15T22:14:46,803 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:46,803 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:46,804 | ^~~~~~~~ 2021-07-15T22:14:46,808 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:46,808 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:46,808 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:14:46,808 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:46,809 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:46,809 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:46,809 | ^ 2021-07-15T22:14:46,809 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:46,810 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:46,810 | ^~~~~~~~ 2021-07-15T22:14:47,159 In file included from ./src/formats/thermoformat.cpp:20: 2021-07-15T22:14:47,159 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBRateData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:47,159 include/openbabel/kinetics.h:44:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:14:47,159 44 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBRateData(*this);} 2021-07-15T22:14:47,160 | ~~~~~~~~^~~~~~ 2021-07-15T22:14:47,181 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBNasaThermoData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:47,181 include/openbabel/kinetics.h:144:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:14:47,181 144 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBNasaThermoData(*this);} 2021-07-15T22:14:47,181 | ~~~~~~~~^~~~~~ 2021-07-15T22:14:50,862 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:50,863 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o /tmp/ccxgtEP7.s 2021-07-15T22:14:50,868 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:51,182 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:51,182 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:51,183 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:51,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/tinkerformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:51,194 Using built-in specs. 2021-07-15T22:14:51,195 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:51,196 Target: arm-linux-gnueabihf 2021-07-15T22:14:51,196 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:51,196 Thread model: posix 2021-07-15T22:14:51,197 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:51,197 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:51,198 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:51,201 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/tinkerformat.cpp -quiet -dumpbase tinkerformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cckFjhWo.s 2021-07-15T22:14:51,213 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:51,214 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:51,214 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:51,215 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:51,215 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:51,215 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:51,215 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:51,215 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:51,216 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:51,216 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:51,216 #include "..." search starts here: 2021-07-15T22:14:51,216 #include <...> search starts here: 2021-07-15T22:14:51,217 /usr/include/eigen3 2021-07-15T22:14:51,217 include 2021-07-15T22:14:51,217 /usr/include/python3.9 2021-07-15T22:14:51,217 /usr/include/c++/10 2021-07-15T22:14:51,217 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:51,217 /usr/include/c++/10/backward 2021-07-15T22:14:51,217 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:51,218 /usr/local/include 2021-07-15T22:14:51,218 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:51,218 /usr/include 2021-07-15T22:14:51,218 End of search list. 2021-07-15T22:14:51,219 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:51,219 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:51,219 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:51,232 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:52,816 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:52,816 from include/openbabel/mol.h:43, 2021-07-15T22:14:52,816 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:52,817 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:14:52,817 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:52,817 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:52,817 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:52,818 | ^ 2021-07-15T22:14:52,818 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:52,818 37 | # define UNUSED(x) x 2021-07-15T22:14:52,818 | ^ 2021-07-15T22:14:53,605 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:53,605 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:53,605 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:14:53,605 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:53,606 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:53,606 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:53,606 | ^ 2021-07-15T22:14:53,606 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:53,607 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:53,607 | ^~~~~~~~ 2021-07-15T22:14:53,615 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:53,615 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:53,615 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:53,615 | ^ 2021-07-15T22:14:53,616 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:53,616 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:53,616 | ^~~~~~~~ 2021-07-15T22:14:53,629 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:53,629 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:53,630 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:53,630 | ^ 2021-07-15T22:14:53,630 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:53,630 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:53,630 | ^~~~~~~~ 2021-07-15T22:14:53,636 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:53,636 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:53,636 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:14:53,636 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:53,637 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:53,637 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:53,637 | ^ 2021-07-15T22:14:53,637 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:53,637 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:53,638 | ^~~~~~~~ 2021-07-15T22:14:54,045 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:54,045 from include/openbabel/mol.h:43, 2021-07-15T22:14:54,046 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:54,046 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:14:54,046 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:14:54,046 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,046 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,046 | ^ 2021-07-15T22:14:54,046 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,046 37 | # define UNUSED(x) x 2021-07-15T22:14:54,047 | ^ 2021-07-15T22:14:54,047 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:14:54,047 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,048 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,048 | ^ 2021-07-15T22:14:54,048 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,048 37 | # define UNUSED(x) x 2021-07-15T22:14:54,048 | ^ 2021-07-15T22:14:54,049 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:14:54,049 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,049 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,049 | ^ 2021-07-15T22:14:54,049 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,049 37 | # define UNUSED(x) x 2021-07-15T22:14:54,050 | ^ 2021-07-15T22:14:54,050 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:14:54,050 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,050 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,051 | ^ 2021-07-15T22:14:54,051 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,051 37 | # define UNUSED(x) x 2021-07-15T22:14:54,051 | ^ 2021-07-15T22:14:54,051 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:14:54,052 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,052 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,052 | ^ 2021-07-15T22:14:54,052 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,052 37 | # define UNUSED(x) x 2021-07-15T22:14:54,052 | ^ 2021-07-15T22:14:54,053 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:14:54,053 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,053 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,053 | ^ 2021-07-15T22:14:54,053 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,053 37 | # define UNUSED(x) x 2021-07-15T22:14:54,054 | ^ 2021-07-15T22:14:54,054 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:14:54,054 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,054 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,055 | ^ 2021-07-15T22:14:54,055 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,055 37 | # define UNUSED(x) x 2021-07-15T22:14:54,055 | ^ 2021-07-15T22:14:54,065 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:14:54,066 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:14:54,066 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:14:54,066 | ^ 2021-07-15T22:14:54,066 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:54,066 37 | # define UNUSED(x) x 2021-07-15T22:14:54,066 | ^ 2021-07-15T22:14:54,075 ./src/formats/tinkerformat.cpp: In member function ‘virtual bool OpenBabel::TinkerFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:54,075 ./src/formats/tinkerformat.cpp:101:9: warning: unused variable ‘atomicNum’ [-Wunused-variable] 2021-07-15T22:14:54,075 101 | int atomicNum; 2021-07-15T22:14:54,075 | ^~~~~~~~~ 2021-07-15T22:14:54,086 ./src/formats/tinkerformat.cpp: In function ‘int OpenBabel::SetMM3Type(OpenBabel::OBAtom*)’: 2021-07-15T22:14:54,086 ./src/formats/tinkerformat.cpp:377:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:54,086 377 | if (b->GetHyb() == 2) // S=C 2021-07-15T22:14:54,086 | ^~ 2021-07-15T22:14:54,087 ./src/formats/tinkerformat.cpp:378:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:54,087 378 | countNeighborC++; break; 2021-07-15T22:14:54,087 | ^~~~~ 2021-07-15T22:14:54,089 ./src/formats/tinkerformat.cpp:220:17: warning: unused variable ‘c’ [-Wunused-variable] 2021-07-15T22:14:54,089 220 | OBAtom *b, *c; // neighbors 2021-07-15T22:14:54,089 | ^ 2021-07-15T22:14:57,117 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:57,118 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o /tmp/cckFjhWo.s 2021-07-15T22:14:57,124 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:57,396 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:57,396 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:57,396 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:57,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/titleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/titleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:57,406 Using built-in specs. 2021-07-15T22:14:57,408 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:57,408 Target: arm-linux-gnueabihf 2021-07-15T22:14:57,408 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:57,408 Thread model: posix 2021-07-15T22:14:57,409 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:57,409 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:57,409 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:57,409 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/titleformat.cpp -quiet -dumpbase titleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/titleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cclcR7ZC.s 2021-07-15T22:14:57,436 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:57,437 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:57,437 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:57,439 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:57,439 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:57,440 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:57,440 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:57,440 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:57,440 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:57,440 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:57,440 #include "..." search starts here: 2021-07-15T22:14:57,441 #include <...> search starts here: 2021-07-15T22:14:57,441 /usr/include/eigen3 2021-07-15T22:14:57,441 include 2021-07-15T22:14:57,441 /usr/include/python3.9 2021-07-15T22:14:57,441 /usr/include/c++/10 2021-07-15T22:14:57,441 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:57,442 /usr/include/c++/10/backward 2021-07-15T22:14:57,442 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:57,442 /usr/local/include 2021-07-15T22:14:57,442 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:57,442 /usr/include 2021-07-15T22:14:57,442 End of search list. 2021-07-15T22:14:57,442 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:57,442 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:57,443 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:57,455 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:59,090 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:59,090 from include/openbabel/mol.h:43, 2021-07-15T22:14:59,090 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:59,090 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:14:59,091 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:59,091 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:59,091 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:59,091 | ^ 2021-07-15T22:14:59,091 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:59,091 37 | # define UNUSED(x) x 2021-07-15T22:14:59,091 | ^ 2021-07-15T22:14:59,880 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:59,880 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:59,881 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:14:59,881 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:59,881 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:59,881 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:59,881 | ^ 2021-07-15T22:14:59,881 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:59,882 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:59,882 | ^~~~~~~~ 2021-07-15T22:14:59,884 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:59,885 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:59,885 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:59,885 | ^ 2021-07-15T22:14:59,885 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:59,885 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:59,885 | ^~~~~~~~ 2021-07-15T22:14:59,903 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:59,903 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:59,903 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:59,904 | ^ 2021-07-15T22:14:59,904 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:59,904 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:59,904 | ^~~~~~~~ 2021-07-15T22:14:59,908 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:59,909 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:59,909 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:14:59,909 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:59,909 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:59,909 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:59,909 | ^ 2021-07-15T22:14:59,910 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:59,910 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:59,910 | ^~~~~~~~ 2021-07-15T22:15:02,582 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:02,582 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/titleformat.o /tmp/cclcR7ZC.s 2021-07-15T22:15:02,588 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:02,779 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:02,779 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:02,779 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:02,784 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/turbomoleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:02,793 Using built-in specs. 2021-07-15T22:15:02,794 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:02,795 Target: arm-linux-gnueabihf 2021-07-15T22:15:02,795 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:02,795 Thread model: posix 2021-07-15T22:15:02,795 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:02,795 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:02,796 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:02,796 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/turbomoleformat.cpp -quiet -dumpbase turbomoleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc87VGv4.s 2021-07-15T22:15:02,808 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:02,808 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:02,809 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:02,809 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:02,809 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:02,809 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:02,809 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:02,810 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:02,810 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:02,810 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:02,810 #include "..." search starts here: 2021-07-15T22:15:02,810 #include <...> search starts here: 2021-07-15T22:15:02,811 /usr/include/eigen3 2021-07-15T22:15:02,811 include 2021-07-15T22:15:02,811 /usr/include/python3.9 2021-07-15T22:15:02,811 /usr/include/c++/10 2021-07-15T22:15:02,811 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:02,811 /usr/include/c++/10/backward 2021-07-15T22:15:02,812 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:02,812 /usr/local/include 2021-07-15T22:15:02,812 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:02,812 /usr/include 2021-07-15T22:15:02,812 End of search list. 2021-07-15T22:15:02,813 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:02,813 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:02,813 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:02,826 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:04,420 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:04,420 from include/openbabel/mol.h:43, 2021-07-15T22:15:04,421 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:04,421 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:15:04,421 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:04,421 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:04,422 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:04,422 | ^ 2021-07-15T22:15:04,422 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:04,422 37 | # define UNUSED(x) x 2021-07-15T22:15:04,422 | ^ 2021-07-15T22:15:05,217 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:05,218 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:05,218 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:15:05,218 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:05,218 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:05,218 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:05,219 | ^ 2021-07-15T22:15:05,219 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:05,219 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:05,219 | ^~~~~~~~ 2021-07-15T22:15:05,222 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:05,222 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:05,222 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:05,222 | ^ 2021-07-15T22:15:05,223 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:05,223 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:05,223 | ^~~~~~~~ 2021-07-15T22:15:05,241 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:05,241 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:05,241 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:05,241 | ^ 2021-07-15T22:15:05,242 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:05,242 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:05,242 | ^~~~~~~~ 2021-07-15T22:15:05,246 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:05,247 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:05,247 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:15:05,247 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:05,247 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:05,248 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:05,248 | ^ 2021-07-15T22:15:05,248 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:05,248 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:05,249 | ^~~~~~~~ 2021-07-15T22:15:08,086 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:08,087 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o /tmp/cc87VGv4.s 2021-07-15T22:15:08,092 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:08,298 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:08,299 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:08,299 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:08,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/unichemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:08,309 Using built-in specs. 2021-07-15T22:15:08,311 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:08,311 Target: arm-linux-gnueabihf 2021-07-15T22:15:08,311 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:08,311 Thread model: posix 2021-07-15T22:15:08,311 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:08,312 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:08,312 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:08,312 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/unichemformat.cpp -quiet -dumpbase unichemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHUKpps.s 2021-07-15T22:15:08,328 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:08,329 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:08,329 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:08,329 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:08,330 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:08,330 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:08,330 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:08,330 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:08,330 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:08,330 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:08,331 #include "..." search starts here: 2021-07-15T22:15:08,331 #include <...> search starts here: 2021-07-15T22:15:08,331 /usr/include/eigen3 2021-07-15T22:15:08,331 include 2021-07-15T22:15:08,331 /usr/include/python3.9 2021-07-15T22:15:08,331 /usr/include/c++/10 2021-07-15T22:15:08,332 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:08,332 /usr/include/c++/10/backward 2021-07-15T22:15:08,332 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:08,332 /usr/local/include 2021-07-15T22:15:08,332 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:08,332 /usr/include 2021-07-15T22:15:08,333 End of search list. 2021-07-15T22:15:08,333 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:08,333 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:08,333 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:08,352 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:10,444 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:10,445 from include/openbabel/mol.h:43, 2021-07-15T22:15:10,445 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:10,445 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:15:10,445 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:10,445 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:10,446 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:10,446 | ^ 2021-07-15T22:15:10,446 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:10,446 37 | # define UNUSED(x) x 2021-07-15T22:15:10,446 | ^ 2021-07-15T22:15:11,236 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:11,237 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:11,237 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:15:11,237 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:11,237 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:11,237 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:11,237 | ^ 2021-07-15T22:15:11,238 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:11,238 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:11,238 | ^~~~~~~~ 2021-07-15T22:15:11,240 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:11,241 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:11,241 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:11,241 | ^ 2021-07-15T22:15:11,241 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:11,241 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:11,242 | ^~~~~~~~ 2021-07-15T22:15:11,259 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:11,259 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:11,259 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:11,260 | ^ 2021-07-15T22:15:11,260 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:11,260 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:11,260 | ^~~~~~~~ 2021-07-15T22:15:11,264 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:11,265 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:11,265 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:15:11,265 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:11,265 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:11,265 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:11,266 | ^ 2021-07-15T22:15:11,266 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:11,266 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:11,266 | ^~~~~~~~ 2021-07-15T22:15:14,228 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:14,229 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o /tmp/ccHUKpps.s 2021-07-15T22:15:14,237 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:14,535 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:14,535 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:14,535 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:14,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/vaspformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:14,548 Using built-in specs. 2021-07-15T22:15:14,550 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:14,550 Target: arm-linux-gnueabihf 2021-07-15T22:15:14,551 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:14,551 Thread model: posix 2021-07-15T22:15:14,551 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:14,552 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:14,553 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:14,556 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/vaspformat.cpp -quiet -dumpbase vaspformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccfEOIrJ.s 2021-07-15T22:15:14,568 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:14,568 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:14,569 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:14,570 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:14,570 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:14,571 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:14,571 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:14,571 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:14,571 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:14,572 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:14,572 #include "..." search starts here: 2021-07-15T22:15:14,572 #include <...> search starts here: 2021-07-15T22:15:14,572 /usr/include/eigen3 2021-07-15T22:15:14,573 include 2021-07-15T22:15:14,573 /usr/include/python3.9 2021-07-15T22:15:14,573 /usr/include/c++/10 2021-07-15T22:15:14,573 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:14,574 /usr/include/c++/10/backward 2021-07-15T22:15:14,574 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:14,574 /usr/local/include 2021-07-15T22:15:14,574 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:14,575 /usr/include 2021-07-15T22:15:14,575 End of search list. 2021-07-15T22:15:14,585 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:14,585 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:14,586 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:14,591 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:16,186 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:16,186 from include/openbabel/mol.h:43, 2021-07-15T22:15:16,186 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:16,186 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:16,187 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:16,187 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:16,187 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:16,187 | ^ 2021-07-15T22:15:16,187 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:16,187 37 | # define UNUSED(x) x 2021-07-15T22:15:16,187 | ^ 2021-07-15T22:15:16,977 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:16,977 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:16,977 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:16,978 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:16,978 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:16,978 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:16,978 | ^ 2021-07-15T22:15:16,978 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:16,979 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:16,979 | ^~~~~~~~ 2021-07-15T22:15:16,983 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:16,983 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:16,983 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:16,984 | ^ 2021-07-15T22:15:16,984 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:16,984 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:16,984 | ^~~~~~~~ 2021-07-15T22:15:17,003 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:17,003 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:17,004 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:17,004 | ^ 2021-07-15T22:15:17,004 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:17,004 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:17,004 | ^~~~~~~~ 2021-07-15T22:15:17,010 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:17,010 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:17,010 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:17,011 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:17,011 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:17,011 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:17,011 | ^ 2021-07-15T22:15:17,011 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:17,012 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:17,012 | ^~~~~~~~ 2021-07-15T22:15:17,552 ./src/formats/vaspformat.cpp: In member function ‘virtual int OpenBabel::VASPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:15:17,552 ./src/formats/vaspformat.cpp:111:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:15:17,552 111 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:15:17,552 | ~~~~^ 2021-07-15T22:15:17,552 ./src/formats/vaspformat.cpp:111:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:15:17,553 111 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:15:17,553 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:15:17,605 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:17,605 ./src/formats/vaspformat.cpp:438:17: warning: unused variable ‘freqnum’ [-Wunused-variable] 2021-07-15T22:15:17,605 438 | int freqnum = atoi(vs[0].c_str()); 2021-07-15T22:15:17,605 | ^~~~~~~ 2021-07-15T22:15:17,640 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:17,641 ./src/formats/vaspformat.cpp:657:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:15:17,641 657 | for(int i = 0; i < atoms_sorted.size(); i++) 2021-07-15T22:15:17,641 | ~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:17,657 ./src/formats/vaspformat.cpp:668:34: warning: suggest braces around empty body in an ‘if’ statement [-Wempty-body] 2021-07-15T22:15:17,657 668 | if(atomicNums.size() > 0); 2021-07-15T22:15:17,657 | ^ 2021-07-15T22:15:17,658 ./src/formats/vaspformat.cpp:668:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:15:17,658 668 | if(atomicNums.size() > 0); 2021-07-15T22:15:17,658 | ^~ 2021-07-15T22:15:17,658 ./src/formats/vaspformat.cpp:669:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:15:17,658 669 | atomicNums.rbegin()->second++; 2021-07-15T22:15:17,659 | ^~~~~~~~~~ 2021-07-15T22:15:22,159 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:22,160 from include/openbabel/mol.h:35, 2021-07-15T22:15:22,160 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:22,160 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:22,160 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::matrix3x3&}; _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator]’: 2021-07-15T22:15:22,160 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:22,160 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:15:22,160 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:22,394 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:15:22,394 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:22,447 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:22,447 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:23,997 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:23,997 ./src/formats/vaspformat.cpp:397:21: warning: ‘fermi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:23,997 397 | dos->SetData(fermi, energies, densities, integration); 2021-07-15T22:15:23,997 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,072 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:24,073 from include/openbabel/mol.h:35, 2021-07-15T22:15:24,073 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:24,073 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:24,073 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,073 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,073 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,074 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,074 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,075 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,075 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,075 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,076 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,080 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,080 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,081 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,081 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,083 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,083 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,083 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,086 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,087 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,087 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,090 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:15:24,090 from include/openbabel/mol.h:35, 2021-07-15T22:15:24,090 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:24,091 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:24,091 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,091 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:24,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:24,097 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:24,097 from include/openbabel/mol.h:35, 2021-07-15T22:15:24,097 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:24,097 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:15:24,098 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:24,098 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:24,098 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:29,549 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:29,549 ./src/formats/vaspformat.cpp:752:26: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:29,549 752 | if (atom->HasData("move")) { 2021-07-15T22:15:29,549 | ~~~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:15:30,728 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:30,728 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o /tmp/ccfEOIrJ.s 2021-07-15T22:15:30,733 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:31,990 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:31,990 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:31,990 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:31,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/viewmolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:32,003 Using built-in specs. 2021-07-15T22:15:32,005 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:32,005 Target: arm-linux-gnueabihf 2021-07-15T22:15:32,005 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:32,006 Thread model: posix 2021-07-15T22:15:32,006 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:32,006 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:32,007 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:32,010 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/viewmolformat.cpp -quiet -dumpbase viewmolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc9apZyU.s 2021-07-15T22:15:32,023 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:32,024 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:32,024 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:32,025 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:32,026 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:32,026 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:32,026 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:32,026 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:32,027 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:32,027 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:32,027 #include "..." search starts here: 2021-07-15T22:15:32,028 #include <...> search starts here: 2021-07-15T22:15:32,028 /usr/include/eigen3 2021-07-15T22:15:32,028 include 2021-07-15T22:15:32,028 /usr/include/python3.9 2021-07-15T22:15:32,028 /usr/include/c++/10 2021-07-15T22:15:32,029 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:32,029 /usr/include/c++/10/backward 2021-07-15T22:15:32,029 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:32,029 /usr/local/include 2021-07-15T22:15:32,030 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:32,030 /usr/include 2021-07-15T22:15:32,030 End of search list. 2021-07-15T22:15:32,035 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:32,035 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:32,036 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:32,048 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:33,633 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:33,633 from include/openbabel/mol.h:43, 2021-07-15T22:15:33,633 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:33,633 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:15:33,633 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:33,634 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:33,634 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:33,634 | ^ 2021-07-15T22:15:33,634 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:33,634 37 | # define UNUSED(x) x 2021-07-15T22:15:33,634 | ^ 2021-07-15T22:15:34,426 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:34,427 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:34,427 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:15:34,427 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:34,427 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:34,427 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:34,427 | ^ 2021-07-15T22:15:34,428 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:34,428 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:34,428 | ^~~~~~~~ 2021-07-15T22:15:34,432 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:34,433 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:34,433 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:34,433 | ^ 2021-07-15T22:15:34,433 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:34,433 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:34,434 | ^~~~~~~~ 2021-07-15T22:15:34,452 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:34,453 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:34,453 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:34,453 | ^ 2021-07-15T22:15:34,453 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:34,454 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:34,454 | ^~~~~~~~ 2021-07-15T22:15:34,459 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:34,460 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:34,460 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:15:34,460 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:34,460 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:34,460 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:34,461 | ^ 2021-07-15T22:15:34,461 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:34,461 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:34,461 | ^~~~~~~~ 2021-07-15T22:15:37,452 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:37,453 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o /tmp/cc9apZyU.s 2021-07-15T22:15:37,460 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:37,751 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:37,752 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:37,752 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:37,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xedformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xedformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:37,762 Using built-in specs. 2021-07-15T22:15:37,763 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:37,763 Target: arm-linux-gnueabihf 2021-07-15T22:15:37,764 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:37,764 Thread model: posix 2021-07-15T22:15:37,765 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:37,765 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:37,766 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:37,767 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xedformat.cpp -quiet -dumpbase xedformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xedformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccz5spBb.s 2021-07-15T22:15:37,775 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:37,776 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:37,777 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:37,777 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:37,778 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:37,778 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:37,778 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:37,778 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:37,779 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:37,779 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:37,779 #include "..." search starts here: 2021-07-15T22:15:37,780 #include <...> search starts here: 2021-07-15T22:15:37,780 /usr/include/eigen3 2021-07-15T22:15:37,780 include 2021-07-15T22:15:37,781 /usr/include/python3.9 2021-07-15T22:15:37,781 /usr/include/c++/10 2021-07-15T22:15:37,781 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:37,782 /usr/include/c++/10/backward 2021-07-15T22:15:37,782 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:37,782 /usr/local/include 2021-07-15T22:15:37,783 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:37,783 /usr/include 2021-07-15T22:15:37,783 End of search list. 2021-07-15T22:15:37,784 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:37,784 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:37,785 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:37,794 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:39,365 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:39,366 from include/openbabel/mol.h:43, 2021-07-15T22:15:39,366 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:39,366 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:15:39,367 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:39,367 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:39,367 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:39,368 | ^ 2021-07-15T22:15:39,368 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:39,368 37 | # define UNUSED(x) x 2021-07-15T22:15:39,368 | ^ 2021-07-15T22:15:40,152 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:40,152 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:40,152 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:15:40,153 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:40,153 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:40,153 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:40,154 | ^ 2021-07-15T22:15:40,154 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:40,154 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:40,155 | ^~~~~~~~ 2021-07-15T22:15:40,156 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:40,157 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:40,157 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:40,157 | ^ 2021-07-15T22:15:40,158 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:40,158 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:40,158 | ^~~~~~~~ 2021-07-15T22:15:40,175 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:40,176 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:40,176 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:40,176 | ^ 2021-07-15T22:15:40,177 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:40,177 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:40,177 | ^~~~~~~~ 2021-07-15T22:15:40,181 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:40,181 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:40,182 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:15:40,182 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:40,182 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:40,183 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:40,183 | ^ 2021-07-15T22:15:40,183 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:40,184 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:40,184 | ^~~~~~~~ 2021-07-15T22:15:42,950 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:42,950 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xedformat.o /tmp/ccz5spBb.s 2021-07-15T22:15:42,962 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:43,179 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:43,180 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:43,180 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:43,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xsfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:43,191 Using built-in specs. 2021-07-15T22:15:43,192 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:43,192 Target: arm-linux-gnueabihf 2021-07-15T22:15:43,192 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:43,192 Thread model: posix 2021-07-15T22:15:43,193 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:43,193 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:43,193 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:43,193 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xsfformat.cpp -quiet -dumpbase xsfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc9sy2Qr.s 2021-07-15T22:15:43,211 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:43,212 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:43,212 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:43,213 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:43,214 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:43,214 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:43,214 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:43,214 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:43,214 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:43,215 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:43,215 #include "..." search starts here: 2021-07-15T22:15:43,216 #include <...> search starts here: 2021-07-15T22:15:43,216 /usr/include/eigen3 2021-07-15T22:15:43,216 include 2021-07-15T22:15:43,216 /usr/include/python3.9 2021-07-15T22:15:43,216 /usr/include/c++/10 2021-07-15T22:15:43,217 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:43,217 /usr/include/c++/10/backward 2021-07-15T22:15:43,217 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:43,217 /usr/local/include 2021-07-15T22:15:43,217 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:43,217 /usr/include 2021-07-15T22:15:43,217 End of search list. 2021-07-15T22:15:43,218 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:43,218 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:43,218 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:43,234 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:44,863 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:44,863 from include/openbabel/mol.h:43, 2021-07-15T22:15:44,863 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:44,863 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:15:44,864 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:44,864 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:44,864 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:44,864 | ^ 2021-07-15T22:15:44,864 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:44,865 37 | # define UNUSED(x) x 2021-07-15T22:15:44,865 | ^ 2021-07-15T22:15:45,660 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:45,660 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:45,660 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:15:45,660 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:45,661 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:45,661 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:45,661 | ^ 2021-07-15T22:15:45,661 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:45,662 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:45,662 | ^~~~~~~~ 2021-07-15T22:15:45,664 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:45,664 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:45,665 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:45,665 | ^ 2021-07-15T22:15:45,665 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:45,665 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:45,666 | ^~~~~~~~ 2021-07-15T22:15:45,683 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:45,683 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:45,684 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:45,684 | ^ 2021-07-15T22:15:45,684 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:45,684 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:45,685 | ^~~~~~~~ 2021-07-15T22:15:45,689 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:45,689 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:45,689 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:15:45,690 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:45,690 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:45,690 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:45,690 | ^ 2021-07-15T22:15:45,691 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:45,691 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:45,691 | ^~~~~~~~ 2021-07-15T22:15:48,364 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:48,364 from include/openbabel/mol.h:35, 2021-07-15T22:15:48,365 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:48,365 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:15:48,365 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:48,365 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:48,365 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:15:48,366 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:48,563 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:48,564 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:48,564 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:48,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:48,566 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:48,566 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:48,567 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:49,058 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:49,058 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o /tmp/cc9sy2Qr.s 2021-07-15T22:15:49,063 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:49,317 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:49,318 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:49,318 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:49,323 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xtcformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:49,330 Using built-in specs. 2021-07-15T22:15:49,331 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:49,331 Target: arm-linux-gnueabihf 2021-07-15T22:15:49,332 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:49,332 Thread model: posix 2021-07-15T22:15:49,332 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:49,333 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:49,334 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:49,337 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xtcformat.cpp -quiet -dumpbase xtcformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccQVYrgI.s 2021-07-15T22:15:49,350 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:49,350 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:49,350 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:49,351 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:49,351 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:49,351 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:49,351 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:49,352 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:49,352 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:49,352 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:49,352 #include "..." search starts here: 2021-07-15T22:15:49,352 #include <...> search starts here: 2021-07-15T22:15:49,353 /usr/include/eigen3 2021-07-15T22:15:49,353 include 2021-07-15T22:15:49,353 /usr/include/python3.9 2021-07-15T22:15:49,353 /usr/include/c++/10 2021-07-15T22:15:49,353 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:49,353 /usr/include/c++/10/backward 2021-07-15T22:15:49,354 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:49,354 /usr/local/include 2021-07-15T22:15:49,354 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:49,354 /usr/include 2021-07-15T22:15:49,355 End of search list. 2021-07-15T22:15:49,355 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:49,355 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:49,355 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:49,371 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:51,018 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:51,018 from include/openbabel/mol.h:43, 2021-07-15T22:15:51,019 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:51,019 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:15:51,019 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:51,019 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:51,020 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:51,020 | ^ 2021-07-15T22:15:51,020 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:51,020 37 | # define UNUSED(x) x 2021-07-15T22:15:51,020 | ^ 2021-07-15T22:15:51,809 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:51,809 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:51,809 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:15:51,809 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:51,810 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:51,810 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:51,810 | ^ 2021-07-15T22:15:51,810 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:51,811 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:51,811 | ^~~~~~~~ 2021-07-15T22:15:51,813 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:51,814 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:51,814 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:51,814 | ^ 2021-07-15T22:15:51,814 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:51,814 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:51,815 | ^~~~~~~~ 2021-07-15T22:15:51,835 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:51,835 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:51,835 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:51,835 | ^ 2021-07-15T22:15:51,836 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:51,836 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:51,836 | ^~~~~~~~ 2021-07-15T22:15:51,839 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:51,839 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:51,839 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:15:51,839 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:51,840 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:51,840 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:51,840 | ^ 2021-07-15T22:15:51,845 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:51,845 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:51,845 | ^~~~~~~~ 2021-07-15T22:15:52,211 ./src/formats/xtcformat.cpp: In member function ‘virtual bool OpenBabel::XTCFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:52,211 ./src/formats/xtcformat.cpp:152:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,211 152 | if (natoms != mol.NumAtoms()) { 2021-07-15T22:15:52,211 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:15:52,222 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::sizeofint(int)’: 2021-07-15T22:15:52,223 ./src/formats/xtcformat.cpp:394:17: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,223 394 | while (size >= num && num_of_bits < 32) { 2021-07-15T22:15:52,223 | ~~~~~^~~~~~ 2021-07-15T22:15:52,224 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::sizeofints(int, unsigned int*)’: 2021-07-15T22:15:52,225 ./src/formats/xtcformat.cpp:434:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:52,225 434 | while (bytes[num_of_bytes] >= num) { 2021-07-15T22:15:52,225 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:15:52,227 ./src/formats/xtcformat.cpp: In member function ‘void OpenBabel::XTCFormat::sendints(int*, int, int, unsigned int*, unsigned int*)’: 2021-07-15T22:15:52,227 ./src/formats/xtcformat.cpp:489:21: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,227 489 | if (num_of_bits >= num_of_bytes * 8) { 2021-07-15T22:15:52,228 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:52,228 ./src/formats/xtcformat.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,228 490 | for (i = 0; i < num_of_bytes; i++) { 2021-07-15T22:15:52,228 | ~~^~~~~~~~~~~~~~ 2021-07-15T22:15:52,229 ./src/formats/xtcformat.cpp:495:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,229 495 | for (i = 0; i < num_of_bytes-1; i++) { 2021-07-15T22:15:52,230 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:15:52,231 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::receivebits(int*, int)’: 2021-07-15T22:15:52,232 ./src/formats/xtcformat.cpp:530:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:52,232 530 | if (lastbits < num_of_bits) { 2021-07-15T22:15:52,232 | ~~~~~~~~~^~~~~~~~~~~~~ 2021-07-15T22:15:52,241 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::xdr3dfcoord(XDR*, float*, int*, float*)’: 2021-07-15T22:15:52,241 ./src/formats/xtcformat.cpp:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:15:52,241 771 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2021-07-15T22:15:52,241 | ^ 2021-07-15T22:15:55,134 ./src/formats/xtcformat.cpp:977:37: warning: ‘bitsizeint[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,134 977 | thiscoord[2] = receivebits(buf, bitsizeint[2]); 2021-07-15T22:15:55,134 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:55,135 ./src/formats/xtcformat.cpp:976:37: warning: ‘bitsizeint[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,135 976 | thiscoord[1] = receivebits(buf, bitsizeint[1]); 2021-07-15T22:15:55,135 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:55,136 ./src/formats/xtcformat.cpp:975:37: warning: ‘bitsizeint[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,136 975 | thiscoord[0] = receivebits(buf, bitsizeint[0]); 2021-07-15T22:15:55,136 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:55,136 ./src/formats/xtcformat.cpp:787:30: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,136 787 | abs(thiscoord[1] - prevcoord[1]) < larger && 2021-07-15T22:15:55,137 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:15:55,137 ./src/formats/xtcformat.cpp:788:30: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,137 788 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2021-07-15T22:15:55,137 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:15:55,138 ./src/formats/xtcformat.cpp:786:30: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:55,138 786 | abs(thiscoord[0] - prevcoord[0]) < larger && 2021-07-15T22:15:55,138 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:15:56,424 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:56,425 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o /tmp/ccQVYrgI.s 2021-07-15T22:15:56,431 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:56,756 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:56,757 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:56,757 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:56,763 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xyzformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:56,770 Using built-in specs. 2021-07-15T22:15:56,772 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:56,772 Target: arm-linux-gnueabihf 2021-07-15T22:15:56,772 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:56,773 Thread model: posix 2021-07-15T22:15:56,773 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:56,773 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:56,774 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:56,778 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xyzformat.cpp -quiet -dumpbase xyzformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNVY53T.s 2021-07-15T22:15:56,791 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:56,792 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:56,792 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:56,793 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:56,794 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:56,794 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:56,794 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:56,795 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:56,795 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:56,795 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:56,796 #include "..." search starts here: 2021-07-15T22:15:56,796 #include <...> search starts here: 2021-07-15T22:15:56,796 /usr/include/eigen3 2021-07-15T22:15:56,796 include 2021-07-15T22:15:56,797 /usr/include/python3.9 2021-07-15T22:15:56,797 /usr/include/c++/10 2021-07-15T22:15:56,797 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:56,798 /usr/include/c++/10/backward 2021-07-15T22:15:56,798 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:56,798 /usr/local/include 2021-07-15T22:15:56,798 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:56,798 /usr/include 2021-07-15T22:15:56,799 End of search list. 2021-07-15T22:15:56,805 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:56,805 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:56,806 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:56,816 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:58,413 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:58,414 from include/openbabel/mol.h:43, 2021-07-15T22:15:58,414 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:58,414 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:15:58,414 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:58,414 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:58,414 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:58,414 | ^ 2021-07-15T22:15:58,415 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:58,415 37 | # define UNUSED(x) x 2021-07-15T22:15:58,415 | ^ 2021-07-15T22:15:59,208 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:59,208 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:59,208 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:15:59,208 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:59,208 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:59,209 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:59,209 | ^ 2021-07-15T22:15:59,209 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:59,209 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:59,209 | ^~~~~~~~ 2021-07-15T22:15:59,214 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:59,214 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:59,214 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:59,214 | ^ 2021-07-15T22:15:59,215 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:59,215 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:59,215 | ^~~~~~~~ 2021-07-15T22:15:59,234 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:59,234 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:59,234 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:59,234 | ^ 2021-07-15T22:15:59,235 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:59,235 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:59,235 | ^~~~~~~~ 2021-07-15T22:15:59,241 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:59,241 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:59,241 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:15:59,241 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:59,241 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:59,241 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:59,242 | ^ 2021-07-15T22:15:59,242 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:59,242 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:59,242 | ^~~~~~~~ 2021-07-15T22:15:59,570 ./src/formats/xyzformat.cpp: In member function ‘virtual bool OpenBabel::XYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:59,571 ./src/formats/xyzformat.cpp:127:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:15:59,571 127 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:15:59,571 | ~^ ~~~~~~~ 2021-07-15T22:15:59,571 | | | 2021-07-15T22:15:59,571 | | unsigned int* 2021-07-15T22:15:59,571 | int* 2021-07-15T22:15:59,571 | %d 2021-07-15T22:16:04,021 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:04,021 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o /tmp/ccNVY53T.s 2021-07-15T22:16:04,027 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:04,415 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:04,415 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:04,415 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:04,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/yasaraformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:04,427 Using built-in specs. 2021-07-15T22:16:04,429 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:04,429 Target: arm-linux-gnueabihf 2021-07-15T22:16:04,429 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:04,429 Thread model: posix 2021-07-15T22:16:04,430 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:04,430 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:04,431 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:04,434 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/yasaraformat.cpp -quiet -dumpbase yasaraformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccOCWUVm.s 2021-07-15T22:16:04,446 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:04,447 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:04,448 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:04,449 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:04,449 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:04,449 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:04,450 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:04,450 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:04,450 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:04,451 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:04,451 #include "..." search starts here: 2021-07-15T22:16:04,451 #include <...> search starts here: 2021-07-15T22:16:04,452 /usr/include/eigen3 2021-07-15T22:16:04,452 include 2021-07-15T22:16:04,452 /usr/include/python3.9 2021-07-15T22:16:04,452 /usr/include/c++/10 2021-07-15T22:16:04,453 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:04,453 /usr/include/c++/10/backward 2021-07-15T22:16:04,453 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:04,453 /usr/local/include 2021-07-15T22:16:04,454 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:04,454 /usr/include 2021-07-15T22:16:04,454 End of search list. 2021-07-15T22:16:04,465 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:04,465 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:04,466 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:04,472 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:06,059 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:06,060 from include/openbabel/mol.h:43, 2021-07-15T22:16:06,060 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:06,060 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:16:06,060 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:06,060 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:06,060 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:06,061 | ^ 2021-07-15T22:16:06,061 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:06,061 37 | # define UNUSED(x) x 2021-07-15T22:16:06,061 | ^ 2021-07-15T22:16:06,860 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:06,860 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:06,860 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:16:06,860 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:06,861 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:06,861 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:06,861 | ^ 2021-07-15T22:16:06,861 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:06,861 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:06,862 | ^~~~~~~~ 2021-07-15T22:16:06,866 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:06,866 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:06,866 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:06,867 | ^ 2021-07-15T22:16:06,867 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:06,867 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:06,867 | ^~~~~~~~ 2021-07-15T22:16:06,886 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:06,887 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:06,887 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:06,887 | ^ 2021-07-15T22:16:06,887 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:06,887 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:06,888 | ^~~~~~~~ 2021-07-15T22:16:06,893 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:06,893 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:06,894 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:16:06,894 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:06,894 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:06,894 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:06,894 | ^ 2021-07-15T22:16:06,894 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:06,895 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:06,895 | ^~~~~~~~ 2021-07-15T22:16:07,230 ./src/formats/yasaraformat.cpp: In function ‘OpenBabel::mobatom* OpenBabel::mob_next(OpenBabel::mobatom*)’: 2021-07-15T22:16:07,230 ./src/formats/yasaraformat.cpp:39:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2021-07-15T22:16:07,231 39 | #define mem_inc(POINTER,INC) (*((char**)&(POINTER))+=(INC)) 2021-07-15T22:16:07,231 | ~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:07,231 ./src/formats/yasaraformat.cpp:221:3: note: in expansion of macro ‘mem_inc’ 2021-07-15T22:16:07,231 221 | { mem_inc(atom,mob_atomsize(atom)); 2021-07-15T22:16:07,231 | ^~~~~~~ 2021-07-15T22:16:07,244 ./src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:07,245 ./src/formats/yasaraformat.cpp:368:21: warning: variable ‘reslen’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:16:07,245 368 | int /*samenames,*/reslen,charged; 2021-07-15T22:16:07,245 | ^~~~~~ 2021-07-15T22:16:07,247 ./src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:07,248 ./src/formats/yasaraformat.cpp:475:40: error: narrowing conversion of ‘-16’ from ‘int’ to ‘char’ [-Wnarrowing] 2021-07-15T22:16:07,248 475 | char double1[8]={0,0,0,0,0,0,-16,0x3f}; 2021-07-15T22:16:07,248 | ^ 2021-07-15T22:16:08,395 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-15T22:16:08,494 Building wheel for maagbel (setup.py): finished with status 'error' 2021-07-15T22:16:08,495 ERROR: Failed building wheel for maagbel 2021-07-15T22:16:08,501 Running setup.py clean for maagbel 2021-07-15T22:16:08,502 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5q5b3gho/maagbel_d82882e6998743d8ae796922f012d865/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T22:16:09,793 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T22:16:09,794 warnings.warn(msg) 2021-07-15T22:16:09,924 running clean 2021-07-15T22:16:09,926 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T22:16:10,064 'build/lib.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T22:16:10,064 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T22:16:10,065 'build/scripts-3.9' does not exist -- can't clean it 2021-07-15T22:16:10,066 removing 'build' 2021-07-15T22:16:10,136 Failed to build maagbel 2021-07-15T22:16:10,136 ERROR: Failed to build one or more wheels 2021-07-15T22:16:10,137 Exception information: 2021-07-15T22:16:10,137 Traceback (most recent call last): 2021-07-15T22:16:10,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T22:16:10,137 status = self.run(options, args) 2021-07-15T22:16:10,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T22:16:10,137 return func(self, options, args) 2021-07-15T22:16:10,137 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T22:16:10,137 raise CommandError( 2021-07-15T22:16:10,137 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T22:16:10,141 Removed build tracker: '/tmp/pip-req-tracker-pfs5efy6'