2021-07-15T21:57:43,485 Created temporary directory: /tmp/pip-ephem-wheel-cache-od8kl6ef 2021-07-15T21:57:43,488 Created temporary directory: /tmp/pip-req-tracker-f4yn66o2 2021-07-15T21:57:43,488 Initialized build tracking at /tmp/pip-req-tracker-f4yn66o2 2021-07-15T21:57:43,488 Created build tracker: /tmp/pip-req-tracker-f4yn66o2 2021-07-15T21:57:43,488 Entered build tracker: /tmp/pip-req-tracker-f4yn66o2 2021-07-15T21:57:43,489 Created temporary directory: /tmp/pip-wheel-zebkatqz 2021-07-15T21:57:43,519 1 location(s) to search for versions of maagbel: 2021-07-15T21:57:43,519 * https://pypi.org/simple/maagbel/ 2021-07-15T21:57:43,519 Fetching project page and analyzing links: https://pypi.org/simple/maagbel/ 2021-07-15T21:57:43,520 Getting page https://pypi.org/simple/maagbel/ 2021-07-15T21:57:43,521 Found index url https://pypi.org/simple 2021-07-15T21:57:43,613 Found link https://files.pythonhosted.org/packages/66/de/8fe70531b8e76dcc8f1208ab3bee0fe940b515b9c5b2bf66832f627331c9/maagbel-0.1.1.tar.gz#sha256=3bb123b08837abaa25719eb1598b5536abdfe2dcafab28e24feb8fb237461b70 (from https://pypi.org/simple/maagbel/), version: 0.1.1 2021-07-15T21:57:43,613 Found link https://files.pythonhosted.org/packages/56/df/95416ae78c46c743df0739d430805645965f57b4cee30083ac8ff9c1ece7/maagbel-0.1.2.tar.gz#sha256=c867e88cbacdc3e8515e2d7d1b33b0ab5430768623644aeec5f01830d76f0575 (from https://pypi.org/simple/maagbel/), version: 0.1.2 2021-07-15T21:57:43,613 Skipping link: not a file: https://pypi.org/simple/maagbel/ 2021-07-15T21:57:43,631 Given no hashes to check 1 links for project 'maagbel': discarding no candidates 2021-07-15T21:57:43,650 Collecting maagbel==0.1.2 2021-07-15T21:57:43,652 Created temporary directory: /tmp/pip-unpack-an_1d1ec 2021-07-15T21:57:44,311 Downloading maagbel-0.1.2.tar.gz (1.8 MB) 2021-07-15T21:57:45,877 Added maagbel==0.1.2 from https://files.pythonhosted.org/packages/56/df/95416ae78c46c743df0739d430805645965f57b4cee30083ac8ff9c1ece7/maagbel-0.1.2.tar.gz#sha256=c867e88cbacdc3e8515e2d7d1b33b0ab5430768623644aeec5f01830d76f0575 to build tracker '/tmp/pip-req-tracker-f4yn66o2' 2021-07-15T21:57:45,878 Running setup.py (path:/tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678/setup.py) egg_info for package maagbel 2021-07-15T21:57:45,879 Created temporary directory: /tmp/pip-pip-egg-info-wtv9w7fr 2021-07-15T21:57:45,879 Running command python setup.py egg_info 2021-07-15T21:57:47,148 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T21:57:47,149 warnings.warn(msg) 2021-07-15T21:57:47,282 running egg_info 2021-07-15T21:57:47,284 creating /tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info 2021-07-15T21:57:47,286 writing /tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/PKG-INFO 2021-07-15T21:57:47,288 writing dependency_links to /tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/dependency_links.txt 2021-07-15T21:57:47,290 writing top-level names to /tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/top_level.txt 2021-07-15T21:57:47,292 writing manifest file '/tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:57:47,673 reading manifest file '/tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:57:47,675 reading manifest template 'MANIFEST.in' 2021-07-15T21:57:47,715 writing manifest file '/tmp/pip-pip-egg-info-wtv9w7fr/maagbel.egg-info/SOURCES.txt' 2021-07-15T21:57:47,800 Source in /tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678 has version 0.1.2, which satisfies requirement maagbel==0.1.2 from https://files.pythonhosted.org/packages/56/df/95416ae78c46c743df0739d430805645965f57b4cee30083ac8ff9c1ece7/maagbel-0.1.2.tar.gz#sha256=c867e88cbacdc3e8515e2d7d1b33b0ab5430768623644aeec5f01830d76f0575 2021-07-15T21:57:47,801 Removed maagbel==0.1.2 from https://files.pythonhosted.org/packages/56/df/95416ae78c46c743df0739d430805645965f57b4cee30083ac8ff9c1ece7/maagbel-0.1.2.tar.gz#sha256=c867e88cbacdc3e8515e2d7d1b33b0ab5430768623644aeec5f01830d76f0575 from build tracker '/tmp/pip-req-tracker-f4yn66o2' 2021-07-15T21:57:47,806 Created temporary directory: /tmp/pip-unpack-tiav185t 2021-07-15T21:57:47,807 Building wheels for collected packages: maagbel 2021-07-15T21:57:47,811 Created temporary directory: /tmp/pip-wheel-uhqtcaxy 2021-07-15T21:57:47,811 Building wheel for maagbel (setup.py): started 2021-07-15T21:57:47,812 Destination directory: /tmp/pip-wheel-uhqtcaxy 2021-07-15T21:57:47,812 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uhqtcaxy 2021-07-15T21:57:49,031 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T21:57:49,032 warnings.warn(msg) 2021-07-15T21:57:49,183 running bdist_wheel 2021-07-15T21:57:49,346 running build 2021-07-15T21:57:49,346 running build_ext 2021-07-15T21:57:49,353 building 'maagbel._cpp' extension 2021-07-15T21:57:49,354 swigging maagbel/cpp.i to maagbel/cpp_wrap.cpp 2021-07-15T21:57:49,354 swig -python -c++ -Iinclude -o maagbel/cpp_wrap.cpp maagbel/cpp.i 2021-07-15T21:57:51,558 include/openbabel/obconversion.h:369: Warning 325: Nested struct not currently supported (StreamState ignored) 2021-07-15T21:57:52,316 include/openbabel/isomorphism.h:159: Warning 325: Nested class not currently supported (Functor ignored) 2021-07-15T21:57:52,501 include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). 2021-07-15T21:57:52,503 include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). 2021-07-15T21:58:14,048 creating build 2021-07-15T21:58:14,048 creating build/temp.linux-armv7l-3.9 2021-07-15T21:58:14,049 creating build/temp.linux-armv7l-3.9/src 2021-07-15T21:58:14,051 creating build/temp.linux-armv7l-3.9/src/charges 2021-07-15T21:58:14,052 creating build/temp.linux-armv7l-3.9/src/depict 2021-07-15T21:58:14,053 creating build/temp.linux-armv7l-3.9/src/descriptors 2021-07-15T21:58:14,054 creating build/temp.linux-armv7l-3.9/src/fingerprints 2021-07-15T21:58:14,055 creating build/temp.linux-armv7l-3.9/src/forcefields 2021-07-15T21:58:14,055 creating build/temp.linux-armv7l-3.9/src/formats 2021-07-15T21:58:14,061 creating build/temp.linux-armv7l-3.9/src/math 2021-07-15T21:58:14,062 creating build/temp.linux-armv7l-3.9/src/ops 2021-07-15T21:58:14,064 creating build/temp.linux-armv7l-3.9/src/stereo 2021-07-15T21:58:14,065 creating build/temp.linux-armv7l-3.9/maagbel 2021-07-15T21:58:14,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/aggregate.cpp -o build/temp.linux-armv7l-3.9/./src/aggregate.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:14,076 Using built-in specs. 2021-07-15T21:58:14,077 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:14,077 Target: arm-linux-gnueabihf 2021-07-15T21:58:14,077 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:14,078 Thread model: posix 2021-07-15T21:58:14,078 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:14,078 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:14,078 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:14,078 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/aggregate.cpp -quiet -dumpbase aggregate.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/aggregate.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc27QeJg.s 2021-07-15T21:58:14,091 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:14,092 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:14,092 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:14,094 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:14,094 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:14,094 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:14,094 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:14,095 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:14,095 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:14,095 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:14,095 #include "..." search starts here: 2021-07-15T21:58:14,095 #include <...> search starts here: 2021-07-15T21:58:14,096 /usr/include/eigen3 2021-07-15T21:58:14,096 include 2021-07-15T21:58:14,096 /usr/include/python3.9 2021-07-15T21:58:14,096 /usr/include/c++/10 2021-07-15T21:58:14,096 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:14,097 /usr/include/c++/10/backward 2021-07-15T21:58:14,097 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:14,097 /usr/local/include 2021-07-15T21:58:14,097 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:14,097 /usr/include 2021-07-15T21:58:14,098 End of search list. 2021-07-15T21:58:14,098 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:14,098 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:14,098 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:14,114 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:15,556 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:15,556 from include/openbabel/mol.h:43, 2021-07-15T21:58:15,556 from ./src/aggregate.cpp:20: 2021-07-15T21:58:15,557 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:15,557 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:15,557 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:15,557 | ^ 2021-07-15T21:58:15,557 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:15,557 37 | # define UNUSED(x) x 2021-07-15T21:58:15,558 | ^ 2021-07-15T21:58:16,258 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:16,258 from ./src/aggregate.cpp:20: 2021-07-15T21:58:16,258 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:16,258 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:16,259 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:16,259 | ^ 2021-07-15T21:58:16,259 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:16,259 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:16,259 | ^~~~~~~~ 2021-07-15T21:58:16,262 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:16,262 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:16,262 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:16,262 | ^ 2021-07-15T21:58:16,262 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:16,263 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:16,263 | ^~~~~~~~ 2021-07-15T21:58:16,278 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:16,278 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:16,279 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:16,279 | ^ 2021-07-15T21:58:16,279 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:16,279 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:16,279 | ^~~~~~~~ 2021-07-15T21:58:16,283 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:16,283 from ./src/aggregate.cpp:20: 2021-07-15T21:58:16,283 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:16,284 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:16,284 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:16,284 | ^ 2021-07-15T21:58:16,284 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:16,284 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:16,284 | ^~~~~~~~ 2021-07-15T21:58:16,472 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:16,473 from include/openbabel/mol.h:43, 2021-07-15T21:58:16,473 from ./src/aggregate.cpp:20: 2021-07-15T21:58:16,473 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:58:16,473 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:58:16,473 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:58:16,473 | ^ 2021-07-15T21:58:16,473 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,474 37 | # define UNUSED(x) x 2021-07-15T21:58:16,474 | ^ 2021-07-15T21:58:16,474 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:58:16,474 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:58:16,474 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:58:16,474 | ^ 2021-07-15T21:58:16,474 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:16,474 37 | # define UNUSED(x) x 2021-07-15T21:58:16,475 | ^ 2021-07-15T21:58:16,738 ./src/aggregate.cpp: In member function ‘float OpenBabel::OBAggregate::MinVDWDist(bool, double)’: 2021-07-15T21:58:16,738 ./src/aggregate.cpp:151:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:58:16,739 151 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:58:16,739 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:16,739 ./src/aggregate.cpp:156:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:58:16,739 156 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:58:16,739 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:16,746 ./src/aggregate.cpp: In member function ‘bool OpenBabel::OBAggregate::IsGoodVDW(double, double)’: 2021-07-15T21:58:16,746 ./src/aggregate.cpp:245:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T21:58:16,746 245 | for (int at_nr=1; at_nr<=etab.GetNumberOfElements();++at_nr){ 2021-07-15T21:58:16,746 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:16,762 ./src/aggregate.cpp: In member function ‘void OpenBabel::OBAggregate::FindAllConnections(bool)’: 2021-07-15T21:58:16,762 ./src/aggregate.cpp:316:20: warning: unused variable ‘a’ [-Wunused-variable] 2021-07-15T21:58:16,762 316 | OBAtom *atom, *a; 2021-07-15T21:58:16,763 | ^ 2021-07-15T21:58:16,781 ./src/aggregate.cpp: In member function ‘std::string OpenBabel::OBAggregate::GetConnections()’: 2021-07-15T21:58:16,781 ./src/aggregate.cpp:558:13: warning: unused variable ‘id’ [-Wunused-variable] 2021-07-15T21:58:16,781 558 | int id = -1; 2021-07-15T21:58:16,781 | ^~ 2021-07-15T21:58:16,781 ./src/aggregate.cpp:559:13: warning: unused variable ‘elements’ [-Wunused-variable] 2021-07-15T21:58:16,782 559 | int elements = 0; 2021-07-15T21:58:16,782 | ^~~~~~~~ 2021-07-15T21:58:16,785 ./src/aggregate.cpp: In member function ‘void OpenBabel::OBAggregate::PrintConnections()’: 2021-07-15T21:58:16,785 ./src/aggregate.cpp:584:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:58:16,785 584 | if ( atom->GetIdx() != id+1 ){ 2021-07-15T21:58:16,786 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T21:58:16,808 ./src/aggregate.cpp: In member function ‘bool OpenBabel::OBAggregate::AddToTag(int, int)’: 2021-07-15T21:58:16,808 ./src/aggregate.cpp:772:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T21:58:16,808 772 | if (tag >= _molTags.size() || tag<0){ 2021-07-15T21:58:16,808 | ~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:21,255 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:58:21,256 from include/openbabel/mol.h:35, 2021-07-15T21:58:21,256 from ./src/aggregate.cpp:20: 2021-07-15T21:58:21,256 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:58:21,256 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:58:21,256 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:58:21,256 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:22,284 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBAggregate::IsGoodVDW(double, double)’: 2021-07-15T21:58:22,284 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:22,284 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:22,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:22,285 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:58:22,285 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:58:22,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:58:23,814 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:23,814 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/aggregate.o /tmp/cc27QeJg.s 2021-07-15T21:58:23,819 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:24,441 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:24,441 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:24,441 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/aggregate.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:24,444 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/alias.cpp -o build/temp.linux-armv7l-3.9/./src/alias.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:24,454 Using built-in specs. 2021-07-15T21:58:24,455 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:24,456 Target: arm-linux-gnueabihf 2021-07-15T21:58:24,456 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:24,456 Thread model: posix 2021-07-15T21:58:24,456 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:24,456 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:24,457 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:24,457 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/alias.cpp -quiet -dumpbase alias.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/alias.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqzqTvu.s 2021-07-15T21:58:24,469 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:24,469 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:24,470 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:24,470 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:24,470 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:24,470 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:24,471 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:24,471 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:24,471 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:24,471 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:24,472 #include "..." search starts here: 2021-07-15T21:58:24,472 #include <...> search starts here: 2021-07-15T21:58:24,472 /usr/include/eigen3 2021-07-15T21:58:24,472 include 2021-07-15T21:58:24,472 /usr/include/python3.9 2021-07-15T21:58:24,472 /usr/include/c++/10 2021-07-15T21:58:24,473 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:24,473 /usr/include/c++/10/backward 2021-07-15T21:58:24,473 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:24,473 /usr/local/include 2021-07-15T21:58:24,473 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:24,473 /usr/include 2021-07-15T21:58:24,474 End of search list. 2021-07-15T21:58:24,474 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:24,474 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:24,474 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:24,490 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:25,978 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:25,979 from include/openbabel/mol.h:43, 2021-07-15T21:58:25,979 from include/openbabel/alias.h:20, 2021-07-15T21:58:25,979 from ./src/alias.cpp:17: 2021-07-15T21:58:25,979 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:25,979 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:25,980 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:25,980 | ^ 2021-07-15T21:58:25,980 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:25,980 37 | # define UNUSED(x) x 2021-07-15T21:58:25,980 | ^ 2021-07-15T21:58:26,671 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:26,671 from include/openbabel/alias.h:20, 2021-07-15T21:58:26,671 from ./src/alias.cpp:17: 2021-07-15T21:58:26,672 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:26,672 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:26,672 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:26,672 | ^ 2021-07-15T21:58:26,672 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:26,672 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:26,673 | ^~~~~~~~ 2021-07-15T21:58:26,675 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:26,675 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:26,675 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:26,675 | ^ 2021-07-15T21:58:26,675 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:26,676 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:26,676 | ^~~~~~~~ 2021-07-15T21:58:26,692 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:26,692 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:26,692 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:26,692 | ^ 2021-07-15T21:58:26,692 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:26,692 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:26,693 | ^~~~~~~~ 2021-07-15T21:58:26,696 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:26,697 from include/openbabel/alias.h:20, 2021-07-15T21:58:26,697 from ./src/alias.cpp:17: 2021-07-15T21:58:26,697 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:26,697 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:26,697 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:26,697 | ^ 2021-07-15T21:58:26,697 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:26,698 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:26,698 | ^~~~~~~~ 2021-07-15T21:58:27,187 ./src/alias.cpp: At global scope: 2021-07-15T21:58:27,188 ./src/alias.cpp:284:74: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:58:27,188 284 | void AliasData::AddExpandedAtom(int id) { _expandedatoms.push_back(id); }; 2021-07-15T21:58:27,188 | ^ 2021-07-15T21:58:31,450 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:31,451 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/alias.o /tmp/ccqzqTvu.s 2021-07-15T21:58:31,457 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:31,856 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:31,857 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:31,857 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/alias.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:31,860 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/atom.cpp -o build/temp.linux-armv7l-3.9/./src/atom.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:31,869 Using built-in specs. 2021-07-15T21:58:31,870 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:31,870 Target: arm-linux-gnueabihf 2021-07-15T21:58:31,870 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:31,870 Thread model: posix 2021-07-15T21:58:31,870 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:31,871 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:31,871 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:31,871 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/atom.cpp -quiet -dumpbase atom.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/atom.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccfxniCL.s 2021-07-15T21:58:31,884 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:31,885 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:31,885 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:31,885 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:31,885 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:31,885 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:31,885 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:31,886 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:31,886 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:31,886 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:31,886 #include "..." search starts here: 2021-07-15T21:58:31,886 #include <...> search starts here: 2021-07-15T21:58:31,886 /usr/include/eigen3 2021-07-15T21:58:31,887 include 2021-07-15T21:58:31,887 /usr/include/python3.9 2021-07-15T21:58:31,887 /usr/include/c++/10 2021-07-15T21:58:31,887 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:31,887 /usr/include/c++/10/backward 2021-07-15T21:58:31,887 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:31,887 /usr/local/include 2021-07-15T21:58:31,888 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:31,888 /usr/include 2021-07-15T21:58:31,888 End of search list. 2021-07-15T21:58:31,888 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:31,888 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:31,889 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:31,903 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:33,199 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:33,199 from ./src/atom.cpp:22: 2021-07-15T21:58:33,199 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:33,200 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:33,200 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:33,200 | ^ 2021-07-15T21:58:33,200 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:33,200 37 | # define UNUSED(x) x 2021-07-15T21:58:33,200 | ^ 2021-07-15T21:58:33,948 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:33,949 from include/openbabel/isomorphism.h:27, 2021-07-15T21:58:33,949 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:58:33,949 from ./src/atom.cpp:23: 2021-07-15T21:58:33,949 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:33,949 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:33,949 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:33,950 | ^ 2021-07-15T21:58:33,950 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:33,950 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:33,950 | ^~~~~~~~ 2021-07-15T21:58:33,952 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:33,952 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:33,953 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:33,953 | ^ 2021-07-15T21:58:33,953 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:33,953 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:33,953 | ^~~~~~~~ 2021-07-15T21:58:33,969 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:33,969 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:33,969 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:33,969 | ^ 2021-07-15T21:58:33,970 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:33,970 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:33,970 | ^~~~~~~~ 2021-07-15T21:58:33,974 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:33,974 from include/openbabel/isomorphism.h:27, 2021-07-15T21:58:33,974 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:58:33,974 from ./src/atom.cpp:23: 2021-07-15T21:58:33,974 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:33,974 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:33,975 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:33,975 | ^ 2021-07-15T21:58:33,975 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:33,975 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:33,975 | ^~~~~~~~ 2021-07-15T21:58:34,297 ./src/atom.cpp: In member function ‘int OpenBabel::OBAtom::HighestBondOrder()’: 2021-07-15T21:58:34,297 ./src/atom.cpp:302:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T21:58:34,297 302 | if(bond->GetBO() > highest) 2021-07-15T21:58:34,298 | ~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T21:58:39,861 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:39,861 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/atom.o /tmp/ccfxniCL.s 2021-07-15T21:58:39,866 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:40,362 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:40,363 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:40,363 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/atom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:40,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/base.cpp -o build/temp.linux-armv7l-3.9/./src/base.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:40,376 Using built-in specs. 2021-07-15T21:58:40,377 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:40,377 Target: arm-linux-gnueabihf 2021-07-15T21:58:40,377 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:40,377 Thread model: posix 2021-07-15T21:58:40,378 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:40,378 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:40,378 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:40,378 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/base.cpp -quiet -dumpbase base.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/base.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccQ3LF7Z.s 2021-07-15T21:58:40,391 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:40,391 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:40,392 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:40,392 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:40,392 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:40,392 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:40,392 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:40,392 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:40,393 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:40,393 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:40,393 #include "..." search starts here: 2021-07-15T21:58:40,393 #include <...> search starts here: 2021-07-15T21:58:40,393 /usr/include/eigen3 2021-07-15T21:58:40,394 include 2021-07-15T21:58:40,394 /usr/include/python3.9 2021-07-15T21:58:40,394 /usr/include/c++/10 2021-07-15T21:58:40,394 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:40,394 /usr/include/c++/10/backward 2021-07-15T21:58:40,394 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:40,394 /usr/local/include 2021-07-15T21:58:40,394 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:40,395 /usr/include 2021-07-15T21:58:40,395 End of search list. 2021-07-15T21:58:40,395 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:40,395 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:40,395 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:40,409 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:41,585 In file included from ./src/base.cpp:21: 2021-07-15T21:58:41,586 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:41,586 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:41,586 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:41,586 | ^ 2021-07-15T21:58:41,586 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:41,586 37 | # define UNUSED(x) x 2021-07-15T21:58:41,587 | ^ 2021-07-15T21:58:42,653 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:42,653 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/base.o /tmp/ccQ3LF7Z.s 2021-07-15T21:58:42,659 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:42,791 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:42,791 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:42,791 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/base.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:42,792 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bitvec.cpp -o build/temp.linux-armv7l-3.9/./src/bitvec.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:42,801 Using built-in specs. 2021-07-15T21:58:42,802 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:42,802 Target: arm-linux-gnueabihf 2021-07-15T21:58:42,802 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:42,803 Thread model: posix 2021-07-15T21:58:42,803 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:42,803 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:42,804 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:42,807 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bitvec.cpp -quiet -dumpbase bitvec.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bitvec.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccnp2oOa.s 2021-07-15T21:58:42,821 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:42,821 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:42,821 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:42,822 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:42,822 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:42,822 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:42,822 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:42,822 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:42,822 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:42,823 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:42,823 #include "..." search starts here: 2021-07-15T21:58:42,823 #include <...> search starts here: 2021-07-15T21:58:42,823 /usr/include/eigen3 2021-07-15T21:58:42,823 include 2021-07-15T21:58:42,824 /usr/include/python3.9 2021-07-15T21:58:42,824 /usr/include/c++/10 2021-07-15T21:58:42,824 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:42,824 /usr/include/c++/10/backward 2021-07-15T21:58:42,824 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:42,824 /usr/local/include 2021-07-15T21:58:42,824 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:42,825 /usr/include 2021-07-15T21:58:42,825 End of search list. 2021-07-15T21:58:42,825 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:42,825 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:42,825 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:42,839 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:46,624 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:46,625 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bitvec.o /tmp/ccnp2oOa.s 2021-07-15T21:58:46,630 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:46,935 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:46,935 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:46,935 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bitvec.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:46,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bond.cpp -o build/temp.linux-armv7l-3.9/./src/bond.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:46,947 Using built-in specs. 2021-07-15T21:58:46,949 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:46,949 Target: arm-linux-gnueabihf 2021-07-15T21:58:46,949 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:46,950 Thread model: posix 2021-07-15T21:58:46,950 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:46,950 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:46,952 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:46,955 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bond.cpp -quiet -dumpbase bond.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bond.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccgYGjVs.s 2021-07-15T21:58:46,967 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:46,968 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:46,968 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:46,968 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:46,968 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:46,968 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:46,968 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:46,969 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:46,969 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:46,969 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:46,969 #include "..." search starts here: 2021-07-15T21:58:46,969 #include <...> search starts here: 2021-07-15T21:58:46,970 /usr/include/eigen3 2021-07-15T21:58:46,970 include 2021-07-15T21:58:46,970 /usr/include/python3.9 2021-07-15T21:58:46,970 /usr/include/c++/10 2021-07-15T21:58:46,970 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:46,970 /usr/include/c++/10/backward 2021-07-15T21:58:46,970 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:46,970 /usr/local/include 2021-07-15T21:58:46,971 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:46,971 /usr/include 2021-07-15T21:58:46,971 End of search list. 2021-07-15T21:58:46,971 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:46,971 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:46,972 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:46,985 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:48,286 In file included from include/openbabel/bond.h:31, 2021-07-15T21:58:48,287 from ./src/bond.cpp:21: 2021-07-15T21:58:48,287 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:48,287 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:48,287 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:48,287 | ^ 2021-07-15T21:58:48,287 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:48,288 37 | # define UNUSED(x) x 2021-07-15T21:58:48,288 | ^ 2021-07-15T21:58:49,035 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:49,035 from ./src/bond.cpp:22: 2021-07-15T21:58:49,035 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:49,035 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:49,035 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:49,036 | ^ 2021-07-15T21:58:49,036 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:49,036 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:49,036 | ^~~~~~~~ 2021-07-15T21:58:49,038 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:49,039 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:49,039 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:49,039 | ^ 2021-07-15T21:58:49,039 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:49,039 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:49,040 | ^~~~~~~~ 2021-07-15T21:58:49,055 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:49,055 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:49,055 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:49,055 | ^ 2021-07-15T21:58:49,056 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:49,056 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:49,056 | ^~~~~~~~ 2021-07-15T21:58:49,060 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:49,060 from ./src/bond.cpp:22: 2021-07-15T21:58:49,060 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:49,060 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:49,060 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:49,060 | ^ 2021-07-15T21:58:49,061 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:49,061 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:49,061 | ^~~~~~~~ 2021-07-15T21:58:51,722 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:51,722 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bond.o /tmp/ccgYGjVs.s 2021-07-15T21:58:51,728 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:51,945 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:51,945 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:51,945 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bond.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:51,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/bondtyper.cpp -o build/temp.linux-armv7l-3.9/./src/bondtyper.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:51,958 Using built-in specs. 2021-07-15T21:58:51,960 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:51,960 Target: arm-linux-gnueabihf 2021-07-15T21:58:51,960 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:51,961 Thread model: posix 2021-07-15T21:58:51,961 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:51,961 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:51,962 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:51,965 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/bondtyper.cpp -quiet -dumpbase bondtyper.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/bondtyper.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccjXD4nP.s 2021-07-15T21:58:51,978 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:51,978 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:51,979 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:51,979 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:51,979 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:51,979 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:51,979 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:51,980 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:51,980 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:51,980 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:51,980 #include "..." search starts here: 2021-07-15T21:58:51,980 #include <...> search starts here: 2021-07-15T21:58:51,981 /usr/include/eigen3 2021-07-15T21:58:51,981 include 2021-07-15T21:58:51,981 /usr/include/python3.9 2021-07-15T21:58:51,981 /usr/include/c++/10 2021-07-15T21:58:51,981 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:51,981 /usr/include/c++/10/backward 2021-07-15T21:58:51,981 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:51,982 /usr/local/include 2021-07-15T21:58:51,982 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:51,982 /usr/include 2021-07-15T21:58:51,982 End of search list. 2021-07-15T21:58:51,982 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:51,982 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:51,983 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:51,997 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:53,356 In file included from include/openbabel/atom.h:33, 2021-07-15T21:58:53,356 from include/openbabel/mol.h:43, 2021-07-15T21:58:53,356 from ./src/bondtyper.cpp:20: 2021-07-15T21:58:53,356 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:53,357 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:53,357 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:53,357 | ^ 2021-07-15T21:58:53,357 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:53,357 37 | # define UNUSED(x) x 2021-07-15T21:58:53,357 | ^ 2021-07-15T21:58:54,053 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:54,053 from ./src/bondtyper.cpp:20: 2021-07-15T21:58:54,053 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:54,054 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:54,054 862 | {return new OBVibrationData(*this);} 2021-07-15T21:58:54,054 | ^ 2021-07-15T21:58:54,054 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:58:54,054 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:58:54,054 | ^~~~~~~~ 2021-07-15T21:58:54,057 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:54,057 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:54,057 907 | {return new OBDOSData(*this);} 2021-07-15T21:58:54,057 | ^ 2021-07-15T21:58:54,057 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:58:54,058 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:58:54,058 | ^~~~~~~~ 2021-07-15T21:58:54,073 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:54,074 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:54,074 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:58:54,074 | ^ 2021-07-15T21:58:54,074 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:58:54,074 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:58:54,074 | ^~~~~~~~ 2021-07-15T21:58:54,078 In file included from include/openbabel/mol.h:52, 2021-07-15T21:58:54,078 from ./src/bondtyper.cpp:20: 2021-07-15T21:58:54,079 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:58:54,079 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:58:54,079 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:58:54,079 | ^ 2021-07-15T21:58:54,079 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:58:54,079 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:58:54,079 | ^~~~~~~~ 2021-07-15T21:58:57,181 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:57,182 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/bondtyper.o /tmp/ccjXD4nP.s 2021-07-15T21:58:57,187 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:58:57,451 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:58:57,451 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:58:57,451 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/bondtyper.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:57,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/builder.cpp -o build/temp.linux-armv7l-3.9/./src/builder.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:58:57,463 Using built-in specs. 2021-07-15T21:58:57,465 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:58:57,465 Target: arm-linux-gnueabihf 2021-07-15T21:58:57,465 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:58:57,466 Thread model: posix 2021-07-15T21:58:57,466 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:58:57,466 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:58:57,467 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:58:57,470 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/builder.cpp -quiet -dumpbase builder.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/builder.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccETBwd1.s 2021-07-15T21:58:57,483 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:57,483 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:57,483 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:57,484 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:58:57,484 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:58:57,484 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:58:57,484 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:58:57,484 ignoring duplicate directory "/usr/include/" 2021-07-15T21:58:57,484 as it is a non-system directory that duplicates a system directory 2021-07-15T21:58:57,485 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:58:57,485 #include "..." search starts here: 2021-07-15T21:58:57,485 #include <...> search starts here: 2021-07-15T21:58:57,485 /usr/include/eigen3 2021-07-15T21:58:57,485 include 2021-07-15T21:58:57,485 /usr/include/python3.9 2021-07-15T21:58:57,486 /usr/include/c++/10 2021-07-15T21:58:57,486 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:58:57,486 /usr/include/c++/10/backward 2021-07-15T21:58:57,486 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:58:57,486 /usr/local/include 2021-07-15T21:58:57,486 /usr/include/arm-linux-gnueabihf 2021-07-15T21:58:57,486 /usr/include 2021-07-15T21:58:57,487 End of search list. 2021-07-15T21:58:57,487 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:58:57,487 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:58:57,487 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:58:57,501 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:58:58,511 ./src/builder.cpp:188:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,512 188 | // \ \ 2021-07-15T21:58:58,512 | ^ 2021-07-15T21:58:58,512 ./src/builder.cpp:190:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,512 190 | // \ 2021-07-15T21:58:58,512 | ^ 2021-07-15T21:58:58,513 ./src/builder.cpp:197:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,513 197 | // \ \ 2021-07-15T21:58:58,513 | ^ 2021-07-15T21:58:58,513 ./src/builder.cpp:199:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,513 199 | // \ 2021-07-15T21:58:58,513 | ^ 2021-07-15T21:58:58,514 ./src/builder.cpp:265:7: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,514 265 | // \ \ 2021-07-15T21:58:58,514 | ^ 2021-07-15T21:58:58,516 ./src/builder.cpp:1215:5: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,516 1215 | // / / v2 / \ 2021-07-15T21:58:58,516 | ^ 2021-07-15T21:58:58,517 ./src/builder.cpp:1324:9: warning: multi-line comment [-Wcomment] 2021-07-15T21:58:58,517 1324 | // / \ 2021-07-15T21:58:58,517 | ^ 2021-07-15T21:58:59,528 In file included from include/openbabel/builder.h:29, 2021-07-15T21:58:59,528 from ./src/builder.cpp:22: 2021-07-15T21:58:59,528 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:58:59,528 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:58:59,529 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:58:59,529 | ^ 2021-07-15T21:58:59,529 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:58:59,529 37 | # define UNUSED(x) x 2021-07-15T21:58:59,529 | ^ 2021-07-15T21:59:00,246 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:00,247 from include/openbabel/builder.h:30, 2021-07-15T21:59:00,247 from ./src/builder.cpp:22: 2021-07-15T21:59:00,247 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:00,247 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:00,247 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:00,247 | ^ 2021-07-15T21:59:00,247 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:00,248 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:00,248 | ^~~~~~~~ 2021-07-15T21:59:00,250 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:00,250 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:00,250 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:00,251 | ^ 2021-07-15T21:59:00,251 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:00,251 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:00,251 | ^~~~~~~~ 2021-07-15T21:59:00,267 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:00,267 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:00,267 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:00,267 | ^ 2021-07-15T21:59:00,267 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:00,267 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:00,268 | ^~~~~~~~ 2021-07-15T21:59:00,271 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:00,272 from include/openbabel/builder.h:30, 2021-07-15T21:59:00,272 from ./src/builder.cpp:22: 2021-07-15T21:59:00,272 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:00,272 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:00,272 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:00,272 | ^ 2021-07-15T21:59:00,272 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:00,273 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:00,273 | ^~~~~~~~ 2021-07-15T21:59:00,550 In file included from include/openbabel/builder.h:29, 2021-07-15T21:59:00,550 from ./src/builder.cpp:22: 2021-07-15T21:59:00,551 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T21:59:00,551 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T21:59:00,551 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T21:59:00,551 | ^ 2021-07-15T21:59:00,551 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:00,551 37 | # define UNUSED(x) x 2021-07-15T21:59:00,552 | ^ 2021-07-15T21:59:00,552 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T21:59:00,552 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T21:59:00,552 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T21:59:00,552 | ^ 2021-07-15T21:59:00,552 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:00,552 37 | # define UNUSED(x) x 2021-07-15T21:59:00,553 | ^ 2021-07-15T21:59:07,632 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:07,632 from include/openbabel/builder.h:23, 2021-07-15T21:59:07,632 from ./src/builder.cpp:22: 2021-07-15T21:59:07,633 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T21:59:07,633 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:07,633 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:07,633 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:08,035 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:59:08,035 from include/openbabel/builder.h:23, 2021-07-15T21:59:08,036 from ./src/builder.cpp:22: 2021-07-15T21:59:08,036 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::OBBuilder::LoadFragments()’: 2021-07-15T21:59:08,036 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:08,036 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:08,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:10,175 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector, std::vector, std::vector)’: 2021-07-15T21:59:10,175 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:10,175 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:10,175 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:10,683 ./src/builder.cpp: In member function ‘bool OpenBabel::OBBuilder::Build(OpenBabel::OBMol&, bool)’: 2021-07-15T21:59:10,683 ./src/builder.cpp:1060:32: warning: ‘match_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:10,683 1060 | match_indices[0] = match_idx; 2021-07-15T21:59:11,788 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:11,789 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/builder.o /tmp/ccETBwd1.s 2021-07-15T21:59:11,793 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:12,709 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:12,709 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:12,709 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/builder.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:12,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/canon.cpp -o build/temp.linux-armv7l-3.9/./src/canon.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:12,725 Using built-in specs. 2021-07-15T21:59:12,726 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:12,727 Target: arm-linux-gnueabihf 2021-07-15T21:59:12,727 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:12,727 Thread model: posix 2021-07-15T21:59:12,727 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:12,727 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:12,728 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:12,728 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/canon.cpp -quiet -dumpbase canon.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/canon.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc6G947E.s 2021-07-15T21:59:12,742 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:12,742 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:12,742 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:12,743 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:12,743 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:12,743 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:12,743 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:12,743 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:12,744 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:12,744 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:12,744 #include "..." search starts here: 2021-07-15T21:59:12,744 #include <...> search starts here: 2021-07-15T21:59:12,744 /usr/include/eigen3 2021-07-15T21:59:12,745 include 2021-07-15T21:59:12,745 /usr/include/python3.9 2021-07-15T21:59:12,745 /usr/include/c++/10 2021-07-15T21:59:12,745 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:12,745 /usr/include/c++/10/backward 2021-07-15T21:59:12,745 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:12,746 /usr/local/include 2021-07-15T21:59:12,746 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:12,746 /usr/include 2021-07-15T21:59:12,746 End of search list. 2021-07-15T21:59:12,746 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:12,746 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:12,747 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:12,762 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:14,105 In file included from include/openbabel/stereo/stereo.h:27, 2021-07-15T21:59:14,105 from include/openbabel/graphsym.h:25, 2021-07-15T21:59:14,105 from ./src/canon.cpp:22: 2021-07-15T21:59:14,105 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:14,106 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:14,106 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:14,106 | ^ 2021-07-15T21:59:14,106 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:14,106 37 | # define UNUSED(x) x 2021-07-15T21:59:14,106 | ^ 2021-07-15T21:59:14,826 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:14,826 from include/openbabel/isomorphism.h:27, 2021-07-15T21:59:14,827 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:59:14,827 from include/openbabel/graphsym.h:25, 2021-07-15T21:59:14,827 from ./src/canon.cpp:22: 2021-07-15T21:59:14,827 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:14,827 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:14,827 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:14,827 | ^ 2021-07-15T21:59:14,828 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:14,828 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:14,828 | ^~~~~~~~ 2021-07-15T21:59:14,830 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:14,830 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:14,830 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:14,830 | ^ 2021-07-15T21:59:14,831 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:14,831 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:14,831 | ^~~~~~~~ 2021-07-15T21:59:14,846 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:14,847 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:14,847 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:14,847 | ^ 2021-07-15T21:59:14,847 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:14,847 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:14,847 | ^~~~~~~~ 2021-07-15T21:59:14,851 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:14,851 from include/openbabel/isomorphism.h:27, 2021-07-15T21:59:14,851 from include/openbabel/stereo/stereo.h:28, 2021-07-15T21:59:14,852 from include/openbabel/graphsym.h:25, 2021-07-15T21:59:14,852 from ./src/canon.cpp:22: 2021-07-15T21:59:14,852 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:14,852 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:14,852 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:14,852 | ^ 2021-07-15T21:59:14,853 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:14,853 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:14,853 | ^~~~~~~~ 2021-07-15T21:59:15,203 ./src/canon.cpp: In constructor ‘OpenBabel::CanonicalLabelsImpl::State::State(const std::vector&, const OpenBabel::OBBitVec&, std::vector&, std::vector&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBBitVec&, bool)’: 2021-07-15T21:59:15,204 ./src/canon.cpp:708:34: warning: ‘OpenBabel::CanonicalLabelsImpl::State::stereoCenters’ will be initialized after [-Wreorder] 2021-07-15T21:59:15,204 708 | std::vector &stereoCenters; 2021-07-15T21:59:15,204 | ^~~~~~~~~~~~~ 2021-07-15T21:59:15,204 ./src/canon.cpp:702:18: warning: ‘const bool OpenBabel::CanonicalLabelsImpl::State::onlyOne’ [-Wreorder] 2021-07-15T21:59:15,204 702 | const bool onlyOne; 2021-07-15T21:59:15,205 | ^~~~~~~ 2021-07-15T21:59:15,205 ./src/canon.cpp:683:7: warning: when initialized here [-Wreorder] 2021-07-15T21:59:15,205 683 | State(const std::vector &_symmetry_classes, 2021-07-15T21:59:15,205 | ^~~~~ 2021-07-15T21:59:15,295 ./src/canon.cpp: In static member function ‘static void OpenBabel::CanonicalLabelsImpl::UpdateMcr(OpenBabel::OBBitVec&, OpenBabel::CanonicalLabelsImpl::Orbits&, OpenBabel::OBMol*, const std::vector&)’: 2021-07-15T21:59:15,295 ./src/canon.cpp:1134:65: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T21:59:15,295 1134 | static void UpdateMcr(OBBitVec &mcr, Orbits &orbits, OBMol *mol, const std::vector &bestLabels) 2021-07-15T21:59:15,295 | ~~~~~~~^~~ 2021-07-15T21:59:32,198 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:32,199 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/canon.o /tmp/cc6G947E.s 2021-07-15T21:59:32,205 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:34,065 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:34,066 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:34,066 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/canon.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:34,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chains.cpp -o build/temp.linux-armv7l-3.9/./src/chains.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:34,086 Using built-in specs. 2021-07-15T21:59:34,087 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:34,088 Target: arm-linux-gnueabihf 2021-07-15T21:59:34,088 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:34,088 Thread model: posix 2021-07-15T21:59:34,088 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:34,088 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:34,089 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:34,089 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chains.cpp -quiet -dumpbase chains.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chains.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccLFkjnV.s 2021-07-15T21:59:34,103 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:34,103 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:34,104 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:34,105 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:34,105 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:34,105 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:34,105 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:34,106 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:34,106 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:34,106 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:34,106 #include "..." search starts here: 2021-07-15T21:59:34,106 #include <...> search starts here: 2021-07-15T21:59:34,107 /usr/include/eigen3 2021-07-15T21:59:34,107 include 2021-07-15T21:59:34,107 /usr/include/python3.9 2021-07-15T21:59:34,107 /usr/include/c++/10 2021-07-15T21:59:34,107 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:34,108 /usr/include/c++/10/backward 2021-07-15T21:59:34,108 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:34,108 /usr/local/include 2021-07-15T21:59:34,108 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:34,108 /usr/include 2021-07-15T21:59:34,108 End of search list. 2021-07-15T21:59:34,109 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:34,109 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:34,109 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:34,124 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:35,480 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:35,480 from include/openbabel/mol.h:43, 2021-07-15T21:59:35,480 from ./src/chains.cpp:33: 2021-07-15T21:59:35,480 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:35,481 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:35,481 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:35,481 | ^ 2021-07-15T21:59:35,481 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:35,481 37 | # define UNUSED(x) x 2021-07-15T21:59:35,481 | ^ 2021-07-15T21:59:36,171 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:36,171 from ./src/chains.cpp:33: 2021-07-15T21:59:36,171 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:36,171 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:36,171 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:36,172 | ^ 2021-07-15T21:59:36,172 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:36,172 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:36,172 | ^~~~~~~~ 2021-07-15T21:59:36,174 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:36,175 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:36,175 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:36,175 | ^ 2021-07-15T21:59:36,175 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:36,175 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:36,175 | ^~~~~~~~ 2021-07-15T21:59:36,191 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:36,191 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:36,191 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:36,192 | ^ 2021-07-15T21:59:36,192 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:36,192 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:36,192 | ^~~~~~~~ 2021-07-15T21:59:36,196 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:36,196 from ./src/chains.cpp:33: 2021-07-15T21:59:36,196 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:36,196 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:36,196 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:36,196 | ^ 2021-07-15T21:59:36,197 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:36,197 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:36,197 | ^~~~~~~~ 2021-07-15T21:59:40,208 ./src/chains.cpp: In member function ‘void OpenBabel::OBChainsParser::ConstrainBackbone(OpenBabel::OBMol&, OpenBabel::Template*, int)’: 2021-07-15T21:59:40,208 ./src/chains.cpp:1271:51: warning: ‘nd’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:40,208 1271 | result = Match4Constraints(pep,na,nb,nc,nd); 2021-07-15T21:59:40,208 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T21:59:40,208 ./src/chains.cpp:1271:51: warning: ‘nc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:40,209 ./src/chains.cpp:1271:51: warning: ‘nb’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:40,209 ./src/chains.cpp:1271:51: warning: ‘na’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T21:59:43,680 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:43,680 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chains.o /tmp/ccLFkjnV.s 2021-07-15T21:59:43,686 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:44,290 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:44,290 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:44,290 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chains.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:44,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chargemodel.cpp -o build/temp.linux-armv7l-3.9/./src/chargemodel.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:44,303 Using built-in specs. 2021-07-15T21:59:44,304 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:44,305 Target: arm-linux-gnueabihf 2021-07-15T21:59:44,305 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:44,305 Thread model: posix 2021-07-15T21:59:44,305 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:44,305 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:44,306 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:44,306 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chargemodel.cpp -quiet -dumpbase chargemodel.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chargemodel.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccujIkFa.s 2021-07-15T21:59:44,318 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:44,318 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:44,318 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:44,318 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:44,319 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:44,319 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:44,319 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:44,319 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:44,319 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:44,320 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:44,320 #include "..." search starts here: 2021-07-15T21:59:44,320 #include <...> search starts here: 2021-07-15T21:59:44,320 /usr/include/eigen3 2021-07-15T21:59:44,320 include 2021-07-15T21:59:44,320 /usr/include/python3.9 2021-07-15T21:59:44,321 /usr/include/c++/10 2021-07-15T21:59:44,321 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:44,321 /usr/include/c++/10/backward 2021-07-15T21:59:44,321 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:44,321 /usr/local/include 2021-07-15T21:59:44,321 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:44,321 /usr/include 2021-07-15T21:59:44,322 End of search list. 2021-07-15T21:59:44,322 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:44,322 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:44,322 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:44,335 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:45,640 In file included from ./src/chargemodel.cpp:21: 2021-07-15T21:59:45,640 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:59:45,640 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:59:45,640 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:59:45,640 | ~~~~~~~^ 2021-07-15T21:59:45,641 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:59:45,641 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:59:45,641 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:59:45,641 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:59:45,742 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:45,742 from include/openbabel/mol.h:43, 2021-07-15T21:59:45,742 from ./src/chargemodel.cpp:22: 2021-07-15T21:59:45,742 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:45,742 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:45,742 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:45,743 | ^ 2021-07-15T21:59:45,743 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:45,743 37 | # define UNUSED(x) x 2021-07-15T21:59:45,743 | ^ 2021-07-15T21:59:46,412 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:46,413 from ./src/chargemodel.cpp:22: 2021-07-15T21:59:46,413 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:46,413 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:46,413 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:46,413 | ^ 2021-07-15T21:59:46,413 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:46,413 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:46,414 | ^~~~~~~~ 2021-07-15T21:59:46,416 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:46,416 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:46,416 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:46,416 | ^ 2021-07-15T21:59:46,417 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:46,417 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:46,417 | ^~~~~~~~ 2021-07-15T21:59:46,433 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:46,433 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:46,433 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:46,433 | ^ 2021-07-15T21:59:46,433 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:46,434 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:46,434 | ^~~~~~~~ 2021-07-15T21:59:46,437 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:46,438 from ./src/chargemodel.cpp:22: 2021-07-15T21:59:46,438 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:46,438 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:46,438 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:46,438 | ^ 2021-07-15T21:59:46,438 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:46,439 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:46,439 | ^~~~~~~~ 2021-07-15T21:59:47,871 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:47,871 from include/openbabel/plugin.h:25, 2021-07-15T21:59:47,871 from include/openbabel/chargemodel.h:24, 2021-07-15T21:59:47,871 from ./src/chargemodel.cpp:21: 2021-07-15T21:59:47,871 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T21:59:47,872 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:47,872 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:47,872 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:47,910 /usr/include/c++/10/bits/vector.tcc: In member function ‘void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)’: 2021-07-15T21:59:47,910 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:47,910 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:47,910 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:47,910 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:47,910 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T21:59:47,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:47,992 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:47,993 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chargemodel.o /tmp/ccujIkFa.s 2021-07-15T21:59:47,998 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:48,067 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:48,068 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:48,068 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chargemodel.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:48,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/eem.cpp -o build/temp.linux-armv7l-3.9/./src/charges/eem.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:48,079 Using built-in specs. 2021-07-15T21:59:48,080 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:48,080 Target: arm-linux-gnueabihf 2021-07-15T21:59:48,081 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:48,081 Thread model: posix 2021-07-15T21:59:48,081 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:48,081 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:48,082 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:48,085 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/eem.cpp -quiet -dumpbase eem.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/eem.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc6Ujcsm.s 2021-07-15T21:59:48,098 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:48,098 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:48,098 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:48,098 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:48,098 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:48,099 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:48,099 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:48,099 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:48,099 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:48,100 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:48,100 #include "..." search starts here: 2021-07-15T21:59:48,100 #include <...> search starts here: 2021-07-15T21:59:48,100 /usr/include/eigen3 2021-07-15T21:59:48,100 include 2021-07-15T21:59:48,100 /usr/include/python3.9 2021-07-15T21:59:48,100 /usr/include/c++/10 2021-07-15T21:59:48,101 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:48,101 /usr/include/c++/10/backward 2021-07-15T21:59:48,101 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:48,101 /usr/local/include 2021-07-15T21:59:48,101 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:48,101 /usr/include 2021-07-15T21:59:48,102 End of search list. 2021-07-15T21:59:48,102 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:48,102 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:48,102 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:48,116 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:49,435 In file included from ./src/charges/eem.cpp:23: 2021-07-15T21:59:49,436 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:59:49,436 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:59:49,436 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:59:49,436 | ~~~~~~~^ 2021-07-15T21:59:49,436 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:59:49,436 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:59:49,436 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:59:49,437 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:59:49,537 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:49,538 from include/openbabel/mol.h:43, 2021-07-15T21:59:49,538 from ./src/charges/eem.cpp:24: 2021-07-15T21:59:49,538 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:49,538 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:49,538 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:49,538 | ^ 2021-07-15T21:59:49,538 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:49,539 37 | # define UNUSED(x) x 2021-07-15T21:59:49,539 | ^ 2021-07-15T21:59:50,208 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:50,208 from ./src/charges/eem.cpp:24: 2021-07-15T21:59:50,209 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:50,209 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:50,209 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:50,209 | ^ 2021-07-15T21:59:50,209 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:50,209 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:50,209 | ^~~~~~~~ 2021-07-15T21:59:50,212 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:50,212 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:50,212 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:50,212 | ^ 2021-07-15T21:59:50,213 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:50,213 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:50,213 | ^~~~~~~~ 2021-07-15T21:59:50,228 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:50,229 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:50,229 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:50,229 | ^ 2021-07-15T21:59:50,229 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:50,229 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:50,229 | ^~~~~~~~ 2021-07-15T21:59:50,233 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:50,233 from ./src/charges/eem.cpp:24: 2021-07-15T21:59:50,233 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:50,234 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:50,234 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:50,234 | ^ 2021-07-15T21:59:50,234 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:50,234 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:50,234 | ^~~~~~~~ 2021-07-15T21:59:52,663 In file included from /usr/include/c++/10/vector:72, 2021-07-15T21:59:52,664 from ./src/charges/eem.cpp:20: 2021-07-15T21:59:52,664 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::EEMParameter&}; _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator]’: 2021-07-15T21:59:52,664 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T21:59:52,664 426 | vector<_Tp, _Alloc>:: 2021-07-15T21:59:52,664 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T21:59:52,791 In file included from /usr/include/c++/10/vector:67, 2021-07-15T21:59:52,791 from ./src/charges/eem.cpp:20: 2021-07-15T21:59:52,791 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::EEMCharges::_loadParameters()’: 2021-07-15T21:59:52,792 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T21:59:52,792 1198 | _M_realloc_insert(end(), __x); 2021-07-15T21:59:52,792 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T21:59:54,032 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:54,032 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/eem.o /tmp/cc6Ujcsm.s 2021-07-15T21:59:54,038 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T21:59:54,365 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T21:59:54,365 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T21:59:54,366 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eem.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:54,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/eqeq.cpp -o build/temp.linux-armv7l-3.9/./src/charges/eqeq.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T21:59:54,379 Using built-in specs. 2021-07-15T21:59:54,380 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T21:59:54,380 Target: arm-linux-gnueabihf 2021-07-15T21:59:54,380 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T21:59:54,380 Thread model: posix 2021-07-15T21:59:54,381 Supported LTO compression algorithms: zlib zstd 2021-07-15T21:59:54,381 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T21:59:54,381 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T21:59:54,381 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/eqeq.cpp -quiet -dumpbase eqeq.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/eqeq.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cczPdneB.s 2021-07-15T21:59:54,395 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:54,395 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:54,396 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:54,396 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T21:59:54,396 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T21:59:54,396 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T21:59:54,396 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T21:59:54,397 ignoring duplicate directory "/usr/include/" 2021-07-15T21:59:54,397 as it is a non-system directory that duplicates a system directory 2021-07-15T21:59:54,397 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T21:59:54,397 #include "..." search starts here: 2021-07-15T21:59:54,397 #include <...> search starts here: 2021-07-15T21:59:54,398 /usr/include/eigen3 2021-07-15T21:59:54,398 include 2021-07-15T21:59:54,398 /usr/include/python3.9 2021-07-15T21:59:54,398 /usr/include/c++/10 2021-07-15T21:59:54,398 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T21:59:54,398 /usr/include/c++/10/backward 2021-07-15T21:59:54,399 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T21:59:54,399 /usr/local/include 2021-07-15T21:59:54,399 /usr/include/arm-linux-gnueabihf 2021-07-15T21:59:54,399 /usr/include 2021-07-15T21:59:54,399 End of search list. 2021-07-15T21:59:54,399 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T21:59:54,400 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T21:59:54,400 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T21:59:54,416 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T21:59:56,046 In file included from include/charges/eqeq.h:22, 2021-07-15T21:59:56,046 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:59:56,046 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T21:59:56,046 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T21:59:56,047 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T21:59:56,047 | ~~~~~~~^ 2021-07-15T21:59:56,047 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T21:59:56,047 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T21:59:56,047 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T21:59:56,047 | ~~~~~~~~~~~~^~~~ 2021-07-15T21:59:56,149 In file included from include/openbabel/atom.h:33, 2021-07-15T21:59:56,149 from include/openbabel/mol.h:43, 2021-07-15T21:59:56,149 from include/charges/eqeq.h:23, 2021-07-15T21:59:56,150 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:59:56,150 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T21:59:56,150 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T21:59:56,150 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T21:59:56,150 | ^ 2021-07-15T21:59:56,150 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T21:59:56,150 37 | # define UNUSED(x) x 2021-07-15T21:59:56,150 | ^ 2021-07-15T21:59:56,817 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:56,818 from include/charges/eqeq.h:23, 2021-07-15T21:59:56,818 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:59:56,818 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:56,818 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:56,818 862 | {return new OBVibrationData(*this);} 2021-07-15T21:59:56,818 | ^ 2021-07-15T21:59:56,819 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T21:59:56,819 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T21:59:56,819 | ^~~~~~~~ 2021-07-15T21:59:56,821 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:56,821 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:56,822 907 | {return new OBDOSData(*this);} 2021-07-15T21:59:56,822 | ^ 2021-07-15T21:59:56,822 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T21:59:56,822 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T21:59:56,822 | ^~~~~~~~ 2021-07-15T21:59:56,838 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:56,838 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:56,838 954 | {return new OBOrbitalData(*this);} 2021-07-15T21:59:56,839 | ^ 2021-07-15T21:59:56,839 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T21:59:56,839 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T21:59:56,839 | ^~~~~~~~ 2021-07-15T21:59:56,843 In file included from include/openbabel/mol.h:52, 2021-07-15T21:59:56,843 from include/charges/eqeq.h:23, 2021-07-15T21:59:56,843 from ./src/charges/eqeq.cpp:19: 2021-07-15T21:59:56,843 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T21:59:56,843 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T21:59:56,844 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T21:59:56,844 | ^ 2021-07-15T21:59:56,844 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T21:59:56,844 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T21:59:56,844 | ^~~~~~~~ 2021-07-15T21:59:58,052 In file included from ./src/charges/eqeq.cpp:19: 2021-07-15T21:59:58,052 include/charges/eqeq.h: At global scope: 2021-07-15T21:59:58,052 include/charges/eqeq.h:66:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T21:59:58,052 66 | }; //namespace OpenBabel 2021-07-15T21:59:58,053 | ^ 2021-07-15T22:00:16,029 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:16,029 from include/openbabel/plugin.h:25, 2021-07-15T22:00:16,029 from include/openbabel/chargemodel.h:24, 2021-07-15T22:00:16,029 from include/charges/eqeq.h:22, 2021-07-15T22:00:16,029 from ./src/charges/eqeq.cpp:19: 2021-07-15T22:00:16,030 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:00:16,030 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:16,030 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:00:16,030 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:18,222 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:18,222 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:18,223 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:18,223 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:18,223 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:18,223 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:18,223 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:20,521 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:20,521 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/eqeq.o /tmp/cczPdneB.s 2021-07-15T22:00:20,527 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:22,981 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:22,981 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:22,981 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/eqeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:22,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/fromfile.cpp -o build/temp.linux-armv7l-3.9/./src/charges/fromfile.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:23,005 Using built-in specs. 2021-07-15T22:00:23,007 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:23,007 Target: arm-linux-gnueabihf 2021-07-15T22:00:23,007 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:23,008 Thread model: posix 2021-07-15T22:00:23,008 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:23,008 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:23,008 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:23,008 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/fromfile.cpp -quiet -dumpbase fromfile.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/fromfile.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccWw2ov9.s 2021-07-15T22:00:23,021 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:23,021 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:23,022 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:23,022 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:23,022 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:23,023 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:23,023 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:23,023 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:23,023 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:23,024 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:23,024 #include "..." search starts here: 2021-07-15T22:00:23,024 #include <...> search starts here: 2021-07-15T22:00:23,024 /usr/include/eigen3 2021-07-15T22:00:23,024 include 2021-07-15T22:00:23,024 /usr/include/python3.9 2021-07-15T22:00:23,025 /usr/include/c++/10 2021-07-15T22:00:23,025 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:23,025 /usr/include/c++/10/backward 2021-07-15T22:00:23,025 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:23,025 /usr/local/include 2021-07-15T22:00:23,025 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:23,026 /usr/include 2021-07-15T22:00:23,026 End of search list. 2021-07-15T22:00:23,026 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:23,026 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:23,027 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:23,043 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:24,358 In file included from ./src/charges/fromfile.cpp:21: 2021-07-15T22:00:24,358 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:24,358 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:00:24,358 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:00:24,358 | ~~~~~~~^ 2021-07-15T22:00:24,359 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:24,359 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:00:24,359 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:00:24,359 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:00:24,460 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:24,460 from include/openbabel/mol.h:43, 2021-07-15T22:00:24,460 from ./src/charges/fromfile.cpp:22: 2021-07-15T22:00:24,460 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:24,460 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:24,461 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:24,461 | ^ 2021-07-15T22:00:24,461 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:24,461 37 | # define UNUSED(x) x 2021-07-15T22:00:24,461 | ^ 2021-07-15T22:00:25,128 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:25,128 from ./src/charges/fromfile.cpp:22: 2021-07-15T22:00:25,128 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:25,129 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:25,129 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:25,129 | ^ 2021-07-15T22:00:25,129 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:25,129 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:25,129 | ^~~~~~~~ 2021-07-15T22:00:25,132 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:25,132 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:25,132 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:25,132 | ^ 2021-07-15T22:00:25,132 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:25,133 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:25,133 | ^~~~~~~~ 2021-07-15T22:00:25,148 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:25,149 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:25,149 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:25,149 | ^ 2021-07-15T22:00:25,149 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:25,149 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:25,149 | ^~~~~~~~ 2021-07-15T22:00:25,153 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:25,153 from ./src/charges/fromfile.cpp:22: 2021-07-15T22:00:25,153 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:25,154 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:25,154 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:25,154 | ^ 2021-07-15T22:00:25,154 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:25,154 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:25,154 | ^~~~~~~~ 2021-07-15T22:00:25,496 ./src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:25,496 ./src/charges/fromfile.cpp:96:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:00:25,497 96 | for ( int i = 1; i <= mol.NumAtoms(); i++) 2021-07-15T22:00:25,497 | ~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:00:27,993 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:00:27,993 from include/openbabel/plugin.h:26, 2021-07-15T22:00:27,993 from include/openbabel/chargemodel.h:24, 2021-07-15T22:00:27,993 from ./src/charges/fromfile.cpp:21: 2021-07-15T22:00:27,994 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:00:27,994 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:00:27,994 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:00:27,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,611 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:00:28,611 from include/openbabel/plugin.h:26, 2021-07-15T22:00:28,611 from include/openbabel/chargemodel.h:24, 2021-07-15T22:00:28,611 from ./src/charges/fromfile.cpp:21: 2021-07-15T22:00:28,611 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:28,612 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:00:28,612 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:00:28,612 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,612 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T22:00:28,612 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,612 522 | std::tuple<>()); 2021-07-15T22:00:28,612 | ~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,613 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:00:28,613 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:00:28,614 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,614 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T22:00:28,614 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,614 522 | std::tuple<>()); 2021-07-15T22:00:28,614 | ~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,615 /usr/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:00:28,615 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:00:28,615 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,615 521 | std::forward_as_tuple(std::move(__k)), 2021-07-15T22:00:28,615 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:28,615 522 | std::tuple<>()); 2021-07-15T22:00:28,616 | ~~~~~~~~~~~~~~~ 2021-07-15T22:00:29,476 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:29,476 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/fromfile.o /tmp/ccWw2ov9.s 2021-07-15T22:00:29,481 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:29,863 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:29,863 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:29,863 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/fromfile.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:29,865 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/gasteiger.cpp -o build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:29,874 Using built-in specs. 2021-07-15T22:00:29,875 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:29,875 Target: arm-linux-gnueabihf 2021-07-15T22:00:29,875 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:29,875 Thread model: posix 2021-07-15T22:00:29,875 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:29,875 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:29,876 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:29,876 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/gasteiger.cpp -quiet -dumpbase gasteiger.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccXNWNYl.s 2021-07-15T22:00:29,887 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:29,887 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:29,887 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:29,888 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:29,888 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:29,888 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:29,888 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:29,889 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:29,889 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:29,889 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:29,889 #include "..." search starts here: 2021-07-15T22:00:29,889 #include <...> search starts here: 2021-07-15T22:00:29,890 /usr/include/eigen3 2021-07-15T22:00:29,890 include 2021-07-15T22:00:29,890 /usr/include/python3.9 2021-07-15T22:00:29,890 /usr/include/c++/10 2021-07-15T22:00:29,890 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:29,890 /usr/include/c++/10/backward 2021-07-15T22:00:29,891 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:29,891 /usr/local/include 2021-07-15T22:00:29,891 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:29,891 /usr/include 2021-07-15T22:00:29,891 End of search list. 2021-07-15T22:00:29,892 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:29,892 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:29,892 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:29,908 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:31,217 In file included from ./src/charges/gasteiger.cpp:20: 2021-07-15T22:00:31,217 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:31,217 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:00:31,217 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:00:31,217 | ~~~~~~~^ 2021-07-15T22:00:31,218 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:31,218 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:00:31,218 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:00:31,218 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:00:31,318 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:31,318 from include/openbabel/mol.h:43, 2021-07-15T22:00:31,318 from ./src/charges/gasteiger.cpp:21: 2021-07-15T22:00:31,319 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:31,319 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:31,319 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:31,319 | ^ 2021-07-15T22:00:31,319 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:31,319 37 | # define UNUSED(x) x 2021-07-15T22:00:31,319 | ^ 2021-07-15T22:00:31,986 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:31,987 from ./src/charges/gasteiger.cpp:21: 2021-07-15T22:00:31,987 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:31,987 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:31,987 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:31,987 | ^ 2021-07-15T22:00:31,987 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:31,987 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:31,988 | ^~~~~~~~ 2021-07-15T22:00:31,990 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:31,990 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:31,990 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:31,991 | ^ 2021-07-15T22:00:31,991 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:31,991 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:31,991 | ^~~~~~~~ 2021-07-15T22:00:32,007 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:32,007 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:32,007 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:32,007 | ^ 2021-07-15T22:00:32,007 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:32,007 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:32,008 | ^~~~~~~~ 2021-07-15T22:00:32,011 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:32,011 from ./src/charges/gasteiger.cpp:21: 2021-07-15T22:00:32,012 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:32,012 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:32,012 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:32,012 | ^ 2021-07-15T22:00:32,012 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:32,012 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:32,013 | ^~~~~~~~ 2021-07-15T22:00:34,042 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,042 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o /tmp/ccXNWNYl.s 2021-07-15T22:00:34,050 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:34,196 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:34,196 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:34,196 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/gasteiger.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/mmff94.cpp -o build/temp.linux-armv7l-3.9/./src/charges/mmff94.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:34,207 Using built-in specs. 2021-07-15T22:00:34,208 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:34,208 Target: arm-linux-gnueabihf 2021-07-15T22:00:34,208 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:34,208 Thread model: posix 2021-07-15T22:00:34,209 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:34,209 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:34,209 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:34,209 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/mmff94.cpp -quiet -dumpbase mmff94.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/mmff94.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdqUXYB.s 2021-07-15T22:00:34,221 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:34,221 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:34,222 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:34,222 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:34,223 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:34,223 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:34,223 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:34,223 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:34,223 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:34,224 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:34,224 #include "..." search starts here: 2021-07-15T22:00:34,224 #include <...> search starts here: 2021-07-15T22:00:34,224 /usr/include/eigen3 2021-07-15T22:00:34,224 include 2021-07-15T22:00:34,224 /usr/include/python3.9 2021-07-15T22:00:34,224 /usr/include/c++/10 2021-07-15T22:00:34,225 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:34,225 /usr/include/c++/10/backward 2021-07-15T22:00:34,225 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:34,225 /usr/local/include 2021-07-15T22:00:34,225 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:34,225 /usr/include 2021-07-15T22:00:34,225 End of search list. 2021-07-15T22:00:34,226 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:34,226 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:34,226 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:34,239 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:35,547 In file included from ./src/charges/mmff94.cpp:20: 2021-07-15T22:00:35,547 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:35,547 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:00:35,548 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:00:35,548 | ~~~~~~~^ 2021-07-15T22:00:35,548 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:35,548 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:00:35,548 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:00:35,548 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:00:35,649 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:35,649 from include/openbabel/mol.h:43, 2021-07-15T22:00:35,649 from ./src/charges/mmff94.cpp:21: 2021-07-15T22:00:35,649 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:35,649 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:35,650 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:35,650 | ^ 2021-07-15T22:00:35,650 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:35,650 37 | # define UNUSED(x) x 2021-07-15T22:00:35,650 | ^ 2021-07-15T22:00:36,317 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:36,317 from ./src/charges/mmff94.cpp:21: 2021-07-15T22:00:36,317 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:36,317 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:36,317 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:36,317 | ^ 2021-07-15T22:00:36,318 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:36,318 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:36,318 | ^~~~~~~~ 2021-07-15T22:00:36,320 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:36,321 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:36,321 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:36,321 | ^ 2021-07-15T22:00:36,321 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:36,321 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:36,321 | ^~~~~~~~ 2021-07-15T22:00:36,337 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:36,337 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:36,337 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:36,338 | ^ 2021-07-15T22:00:36,338 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:36,338 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:36,338 | ^~~~~~~~ 2021-07-15T22:00:36,342 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:36,342 from ./src/charges/mmff94.cpp:21: 2021-07-15T22:00:36,342 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:36,342 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:36,342 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:36,343 | ^ 2021-07-15T22:00:36,343 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:36,343 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:36,343 | ^~~~~~~~ 2021-07-15T22:00:36,579 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:36,579 from include/openbabel/mol.h:43, 2021-07-15T22:00:36,579 from ./src/charges/mmff94.cpp:21: 2021-07-15T22:00:36,580 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:00:36,580 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,580 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,580 | ^ 2021-07-15T22:00:36,580 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,580 37 | # define UNUSED(x) x 2021-07-15T22:00:36,580 | ^ 2021-07-15T22:00:36,581 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:00:36,581 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,581 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,581 | ^ 2021-07-15T22:00:36,581 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,581 37 | # define UNUSED(x) x 2021-07-15T22:00:36,582 | ^ 2021-07-15T22:00:36,582 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:00:36,582 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,582 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,582 | ^ 2021-07-15T22:00:36,582 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,582 37 | # define UNUSED(x) x 2021-07-15T22:00:36,583 | ^ 2021-07-15T22:00:36,583 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:00:36,583 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,583 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,583 | ^ 2021-07-15T22:00:36,583 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,583 37 | # define UNUSED(x) x 2021-07-15T22:00:36,583 | ^ 2021-07-15T22:00:36,584 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:00:36,584 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,584 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,584 | ^ 2021-07-15T22:00:36,584 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,584 37 | # define UNUSED(x) x 2021-07-15T22:00:36,584 | ^ 2021-07-15T22:00:36,585 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:00:36,585 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,585 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,585 | ^ 2021-07-15T22:00:36,585 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,585 37 | # define UNUSED(x) x 2021-07-15T22:00:36,585 | ^ 2021-07-15T22:00:36,585 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:00:36,586 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,586 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,586 | ^ 2021-07-15T22:00:36,586 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,586 37 | # define UNUSED(x) x 2021-07-15T22:00:36,586 | ^ 2021-07-15T22:00:36,586 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:00:36,587 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:00:36,587 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:00:36,587 | ^ 2021-07-15T22:00:36,587 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:36,587 37 | # define UNUSED(x) x 2021-07-15T22:00:36,587 | ^ 2021-07-15T22:00:38,609 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:00:38,609 from include/openbabel/plugin.h:25, 2021-07-15T22:00:38,609 from include/openbabel/chargemodel.h:24, 2021-07-15T22:00:38,609 from ./src/charges/mmff94.cpp:20: 2021-07-15T22:00:38,610 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:00:38,610 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:00:38,610 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:00:38,610 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:38,663 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:38,664 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:38,664 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:38,664 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:38,664 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:00:38,664 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:00:38,664 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:00:38,870 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:38,870 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/mmff94.o /tmp/ccdqUXYB.s 2021-07-15T22:00:38,875 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:39,073 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:39,074 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:39,074 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/mmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:39,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/none.cpp -o build/temp.linux-armv7l-3.9/./src/charges/none.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:39,084 Using built-in specs. 2021-07-15T22:00:39,085 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:39,085 Target: arm-linux-gnueabihf 2021-07-15T22:00:39,085 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:39,086 Thread model: posix 2021-07-15T22:00:39,086 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:39,086 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:39,086 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:39,086 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/none.cpp -quiet -dumpbase none.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/none.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZeKdqN.s 2021-07-15T22:00:39,098 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:39,098 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:39,099 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:39,099 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:39,099 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:39,099 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:39,099 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:39,099 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:39,100 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:39,100 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:39,100 #include "..." search starts here: 2021-07-15T22:00:39,100 #include <...> search starts here: 2021-07-15T22:00:39,100 /usr/include/eigen3 2021-07-15T22:00:39,100 include 2021-07-15T22:00:39,101 /usr/include/python3.9 2021-07-15T22:00:39,101 /usr/include/c++/10 2021-07-15T22:00:39,101 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:39,101 /usr/include/c++/10/backward 2021-07-15T22:00:39,101 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:39,101 /usr/local/include 2021-07-15T22:00:39,101 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:39,102 /usr/include 2021-07-15T22:00:39,102 End of search list. 2021-07-15T22:00:39,102 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:39,102 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:39,102 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:39,116 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:40,415 In file included from ./src/charges/none.cpp:21: 2021-07-15T22:00:40,415 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:40,415 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:00:40,416 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:00:40,416 | ~~~~~~~^ 2021-07-15T22:00:40,416 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:40,416 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:00:40,416 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:00:40,416 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:00:40,517 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:40,517 from include/openbabel/mol.h:43, 2021-07-15T22:00:40,517 from ./src/charges/none.cpp:22: 2021-07-15T22:00:40,517 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:40,517 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:40,517 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:40,518 | ^ 2021-07-15T22:00:40,518 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:40,518 37 | # define UNUSED(x) x 2021-07-15T22:00:40,518 | ^ 2021-07-15T22:00:41,187 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:41,187 from ./src/charges/none.cpp:22: 2021-07-15T22:00:41,187 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:41,187 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:41,187 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:41,188 | ^ 2021-07-15T22:00:41,188 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:41,188 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:41,188 | ^~~~~~~~ 2021-07-15T22:00:41,190 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:41,191 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:41,191 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:41,191 | ^ 2021-07-15T22:00:41,191 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:41,191 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:41,192 | ^~~~~~~~ 2021-07-15T22:00:41,207 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:41,207 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:41,208 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:41,208 | ^ 2021-07-15T22:00:41,208 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:41,208 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:41,208 | ^~~~~~~~ 2021-07-15T22:00:41,212 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:41,212 from ./src/charges/none.cpp:22: 2021-07-15T22:00:41,212 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:41,212 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:41,212 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:41,213 | ^ 2021-07-15T22:00:41,213 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:41,213 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:41,213 | ^~~~~~~~ 2021-07-15T22:00:43,214 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,214 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/none.o /tmp/ccZeKdqN.s 2021-07-15T22:00:43,219 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:00:43,378 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:00:43,379 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:00:43,379 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/none.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/qeq.cpp -o build/temp.linux-armv7l-3.9/./src/charges/qeq.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:00:43,389 Using built-in specs. 2021-07-15T22:00:43,390 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:00:43,391 Target: arm-linux-gnueabihf 2021-07-15T22:00:43,391 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:00:43,391 Thread model: posix 2021-07-15T22:00:43,391 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:00:43,392 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:00:43,392 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:00:43,392 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/qeq.cpp -quiet -dumpbase qeq.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/qeq.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctlhkle.s 2021-07-15T22:00:43,402 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:43,403 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:43,403 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:43,403 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:00:43,403 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:00:43,403 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:00:43,403 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:00:43,404 ignoring duplicate directory "/usr/include/" 2021-07-15T22:00:43,404 as it is a non-system directory that duplicates a system directory 2021-07-15T22:00:43,404 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:00:43,404 #include "..." search starts here: 2021-07-15T22:00:43,404 #include <...> search starts here: 2021-07-15T22:00:43,405 /usr/include/eigen3 2021-07-15T22:00:43,405 include 2021-07-15T22:00:43,405 /usr/include/python3.9 2021-07-15T22:00:43,405 /usr/include/c++/10 2021-07-15T22:00:43,405 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:00:43,405 /usr/include/c++/10/backward 2021-07-15T22:00:43,405 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:00:43,405 /usr/local/include 2021-07-15T22:00:43,406 /usr/include/arm-linux-gnueabihf 2021-07-15T22:00:43,406 /usr/include 2021-07-15T22:00:43,406 End of search list. 2021-07-15T22:00:43,406 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:00:43,406 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:00:43,406 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:00:43,419 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:00:44,960 In file included from include/charges/qeq.h:22, 2021-07-15T22:00:44,960 from ./src/charges/qeq.cpp:19: 2021-07-15T22:00:44,960 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:00:44,960 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:00:44,960 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:00:44,961 | ~~~~~~~^ 2021-07-15T22:00:44,961 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:00:44,961 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:00:44,961 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:00:44,961 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:00:45,062 In file included from include/openbabel/atom.h:33, 2021-07-15T22:00:45,063 from include/openbabel/mol.h:43, 2021-07-15T22:00:45,063 from include/charges/qeq.h:23, 2021-07-15T22:00:45,063 from ./src/charges/qeq.cpp:19: 2021-07-15T22:00:45,063 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:00:45,063 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:00:45,063 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:00:45,064 | ^ 2021-07-15T22:00:45,064 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:00:45,064 37 | # define UNUSED(x) x 2021-07-15T22:00:45,064 | ^ 2021-07-15T22:00:45,772 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:45,772 from include/charges/qeq.h:23, 2021-07-15T22:00:45,772 from ./src/charges/qeq.cpp:19: 2021-07-15T22:00:45,772 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:45,773 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:45,773 862 | {return new OBVibrationData(*this);} 2021-07-15T22:00:45,773 | ^ 2021-07-15T22:00:45,773 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:00:45,773 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:00:45,773 | ^~~~~~~~ 2021-07-15T22:00:45,776 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:45,776 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:45,776 907 | {return new OBDOSData(*this);} 2021-07-15T22:00:45,776 | ^ 2021-07-15T22:00:45,777 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:00:45,777 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:00:45,777 | ^~~~~~~~ 2021-07-15T22:00:45,793 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:45,793 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:45,793 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:00:45,793 | ^ 2021-07-15T22:00:45,793 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:00:45,794 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:00:45,794 | ^~~~~~~~ 2021-07-15T22:00:45,797 In file included from include/openbabel/mol.h:52, 2021-07-15T22:00:45,798 from include/charges/qeq.h:23, 2021-07-15T22:00:45,798 from ./src/charges/qeq.cpp:19: 2021-07-15T22:00:45,798 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:00:45,798 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:00:45,798 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:00:45,798 | ^ 2021-07-15T22:00:45,799 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:00:45,799 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:00:45,799 | ^~~~~~~~ 2021-07-15T22:00:47,112 In file included from ./src/charges/qeq.cpp:19: 2021-07-15T22:00:47,112 include/charges/qeq.h: At global scope: 2021-07-15T22:00:47,112 include/charges/qeq.h:70:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:00:47,112 70 | }; //namespace OpenBabel 2021-07-15T22:00:47,112 | ^ 2021-07-15T22:00:47,299 ./src/charges/qeq.cpp: In member function ‘Eigen::Vector3d OpenBabel::QEqCharges::GetParameters(unsigned int, int)’: 2021-07-15T22:00:47,300 ./src/charges/qeq.cpp:148:58: warning: unused parameter ‘Q’ [-Wunused-parameter] 2021-07-15T22:00:47,300 148 | Vector3d QEqCharges::GetParameters(unsigned int Z, int Q) 2021-07-15T22:00:47,300 | ~~~~^ 2021-07-15T22:01:12,980 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:01:12,980 from include/openbabel/plugin.h:25, 2021-07-15T22:01:12,980 from include/openbabel/chargemodel.h:24, 2021-07-15T22:01:12,980 from include/charges/qeq.h:22, 2021-07-15T22:01:12,980 from ./src/charges/qeq.cpp:19: 2021-07-15T22:01:12,980 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2021-07-15T22:01:12,981 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:01:12,981 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:01:12,981 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:13,099 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:01:13,099 from include/openbabel/plugin.h:25, 2021-07-15T22:01:13,100 from include/openbabel/chargemodel.h:24, 2021-07-15T22:01:13,100 from include/charges/qeq.h:22, 2021-07-15T22:01:13,100 from ./src/charges/qeq.cpp:19: 2021-07-15T22:01:13,100 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::QEqCharges::ParseParamFile()’: 2021-07-15T22:01:13,100 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:01:13,100 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:01:13,100 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:01:13,333 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:01:13,333 from include/openbabel/plugin.h:25, 2021-07-15T22:01:13,333 from include/openbabel/chargemodel.h:24, 2021-07-15T22:01:13,333 from include/charges/qeq.h:22, 2021-07-15T22:01:13,333 from ./src/charges/qeq.cpp:19: 2021-07-15T22:01:13,333 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:01:13,334 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:01:13,334 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:01:13,334 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:13,469 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:01:13,470 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:01:23,604 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:01:23,605 from include/openbabel/plugin.h:25, 2021-07-15T22:01:23,605 from include/openbabel/chargemodel.h:24, 2021-07-15T22:01:23,605 from include/charges/qeq.h:22, 2021-07-15T22:01:23,605 from ./src/charges/qeq.cpp:19: 2021-07-15T22:01:23,605 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:01:23,606 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:23,606 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:01:23,606 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:01:23,606 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:01:23,606 from include/openbabel/plugin.h:25, 2021-07-15T22:01:23,606 from include/openbabel/chargemodel.h:24, 2021-07-15T22:01:23,606 from include/charges/qeq.h:22, 2021-07-15T22:01:23,606 from ./src/charges/qeq.cpp:19: 2021-07-15T22:01:23,607 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:01:23,607 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:01:23,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:01:26,859 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:26,859 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/qeq.o /tmp/cctlhkle.s 2021-07-15T22:01:26,864 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:01:31,733 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:01:31,734 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:01:31,734 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qeq.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:31,757 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/charges/qtpie.cpp -o build/temp.linux-armv7l-3.9/./src/charges/qtpie.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:01:31,770 Using built-in specs. 2021-07-15T22:01:31,771 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:01:31,772 Target: arm-linux-gnueabihf 2021-07-15T22:01:31,772 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:01:31,772 Thread model: posix 2021-07-15T22:01:31,772 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:01:31,773 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:01:31,774 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:01:31,776 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/charges/qtpie.cpp -quiet -dumpbase qtpie.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/charges/qtpie.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccQhwBuM.s 2021-07-15T22:01:31,789 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:31,789 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:31,789 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:31,790 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:01:31,791 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:01:31,791 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:01:31,791 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:01:31,791 ignoring duplicate directory "/usr/include/" 2021-07-15T22:01:31,791 as it is a non-system directory that duplicates a system directory 2021-07-15T22:01:31,792 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:01:31,792 #include "..." search starts here: 2021-07-15T22:01:31,792 #include <...> search starts here: 2021-07-15T22:01:31,792 /usr/include/eigen3 2021-07-15T22:01:31,792 include 2021-07-15T22:01:31,793 /usr/include/python3.9 2021-07-15T22:01:31,793 /usr/include/c++/10 2021-07-15T22:01:31,793 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:01:31,793 /usr/include/c++/10/backward 2021-07-15T22:01:31,793 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:01:31,793 /usr/local/include 2021-07-15T22:01:31,793 /usr/include/arm-linux-gnueabihf 2021-07-15T22:01:31,794 /usr/include 2021-07-15T22:01:31,794 End of search list. 2021-07-15T22:01:31,794 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:01:31,794 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:01:31,795 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:01:31,810 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:01:33,306 In file included from include/charges/qtpie.h:22, 2021-07-15T22:01:33,306 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:01:33,306 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:01:33,306 include/openbabel/chargemodel.h:41:40: warning: unused parameter ‘m’ [-Wunused-parameter] 2021-07-15T22:01:33,307 41 | virtual bool ComputeCharges(OBMol &m ) { return false; }; 2021-07-15T22:01:33,307 | ~~~~~~~^ 2021-07-15T22:01:33,307 include/openbabel/chargemodel.h: In member function ‘virtual bool OpenBabel::OBChargeModel::ComputeCharges(OpenBabel::OBMol&, const char*)’: 2021-07-15T22:01:33,307 include/openbabel/chargemodel.h:42:55: warning: unused parameter ‘args’ [-Wunused-parameter] 2021-07-15T22:01:33,307 42 | virtual bool ComputeCharges(OBMol &m, const char *args) { return ComputeCharges( m ); } 2021-07-15T22:01:33,307 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:01:33,408 In file included from include/openbabel/atom.h:33, 2021-07-15T22:01:33,408 from include/openbabel/mol.h:43, 2021-07-15T22:01:33,408 from include/charges/qtpie.h:23, 2021-07-15T22:01:33,408 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:01:33,408 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:01:33,408 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:01:33,409 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:01:33,409 | ^ 2021-07-15T22:01:33,409 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:01:33,409 37 | # define UNUSED(x) x 2021-07-15T22:01:33,409 | ^ 2021-07-15T22:01:34,131 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:34,132 from include/charges/qtpie.h:23, 2021-07-15T22:01:34,132 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:01:34,132 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:34,132 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:34,132 862 | {return new OBVibrationData(*this);} 2021-07-15T22:01:34,132 | ^ 2021-07-15T22:01:34,132 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:01:34,133 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:01:34,133 | ^~~~~~~~ 2021-07-15T22:01:34,135 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:34,135 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:34,136 907 | {return new OBDOSData(*this);} 2021-07-15T22:01:34,136 | ^ 2021-07-15T22:01:34,136 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:01:34,136 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:01:34,136 | ^~~~~~~~ 2021-07-15T22:01:34,152 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:34,152 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:34,152 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:01:34,152 | ^ 2021-07-15T22:01:34,153 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:01:34,153 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:01:34,153 | ^~~~~~~~ 2021-07-15T22:01:34,156 In file included from include/openbabel/mol.h:52, 2021-07-15T22:01:34,157 from include/charges/qtpie.h:23, 2021-07-15T22:01:34,157 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:01:34,157 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:01:34,157 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:01:34,157 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:01:34,157 | ^ 2021-07-15T22:01:34,158 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:01:34,158 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:01:34,158 | ^~~~~~~~ 2021-07-15T22:01:35,465 In file included from ./src/charges/qtpie.cpp:19: 2021-07-15T22:01:35,465 include/charges/qtpie.h: At global scope: 2021-07-15T22:01:35,466 include/charges/qtpie.h:75:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:01:35,466 75 | }; //namespace OpenBabel 2021-07-15T22:01:35,466 | ^ 2021-07-15T22:01:35,652 ./src/charges/qtpie.cpp: In member function ‘Eigen::Vector3d OpenBabel::QTPIECharges::GetParameters(unsigned int, int)’: 2021-07-15T22:01:35,652 ./src/charges/qtpie.cpp:145:60: warning: unused parameter ‘Q’ [-Wunused-parameter] 2021-07-15T22:01:35,652 145 | Vector3d QTPIECharges::GetParameters(unsigned int Z, int Q) 2021-07-15T22:01:35,653 | ~~~~^ 2021-07-15T22:02:01,299 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:01,299 from include/openbabel/plugin.h:25, 2021-07-15T22:02:01,299 from include/openbabel/chargemodel.h:24, 2021-07-15T22:02:01,300 from include/charges/qtpie.h:22, 2021-07-15T22:02:01,300 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:02:01,300 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix&}; _Tp = Eigen::Matrix; _Alloc = std::allocator >]’: 2021-07-15T22:02:01,300 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:02:01,300 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:01,300 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:01,417 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:01,418 from include/openbabel/plugin.h:25, 2021-07-15T22:02:01,418 from include/openbabel/chargemodel.h:24, 2021-07-15T22:02:01,418 from include/charges/qtpie.h:22, 2021-07-15T22:02:01,418 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:02:01,418 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::QTPIECharges::ParseParamFile()’: 2021-07-15T22:02:01,418 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:02:01,419 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:01,419 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:01,676 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:01,677 from include/openbabel/plugin.h:25, 2021-07-15T22:02:01,677 from include/openbabel/chargemodel.h:24, 2021-07-15T22:02:01,677 from include/charges/qtpie.h:22, 2021-07-15T22:02:01,677 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:02:01,677 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:02:01,678 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:01,678 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:01,678 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:01,832 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:02:01,832 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:12,006 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:12,006 from include/openbabel/plugin.h:25, 2021-07-15T22:02:12,007 from include/openbabel/chargemodel.h:24, 2021-07-15T22:02:12,007 from include/charges/qtpie.h:22, 2021-07-15T22:02:12,007 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:02:12,007 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)’: 2021-07-15T22:02:12,007 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:12,007 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:12,007 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:12,008 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:12,008 from include/openbabel/plugin.h:25, 2021-07-15T22:02:12,008 from include/openbabel/chargemodel.h:24, 2021-07-15T22:02:12,008 from include/charges/qtpie.h:22, 2021-07-15T22:02:12,008 from ./src/charges/qtpie.cpp:19: 2021-07-15T22:02:12,008 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:12,008 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:12,009 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:15,570 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:15,571 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/charges/qtpie.o /tmp/ccQhwBuM.s 2021-07-15T22:02:15,577 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:20,430 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:20,430 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:20,430 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/charges/qtpie.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:20,451 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/chiral.cpp -o build/temp.linux-armv7l-3.9/./src/chiral.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:20,463 Using built-in specs. 2021-07-15T22:02:20,464 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:20,465 Target: arm-linux-gnueabihf 2021-07-15T22:02:20,465 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:20,465 Thread model: posix 2021-07-15T22:02:20,465 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:20,466 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:20,466 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:20,466 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/chiral.cpp -quiet -dumpbase chiral.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/chiral.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpWNMQP.s 2021-07-15T22:02:20,480 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:20,480 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:20,481 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:20,482 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:20,482 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:20,482 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:20,482 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:20,482 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:20,483 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:20,483 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:20,483 #include "..." search starts here: 2021-07-15T22:02:20,483 #include <...> search starts here: 2021-07-15T22:02:20,483 /usr/include/eigen3 2021-07-15T22:02:20,484 include 2021-07-15T22:02:20,484 /usr/include/python3.9 2021-07-15T22:02:20,484 /usr/include/c++/10 2021-07-15T22:02:20,484 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:20,484 /usr/include/c++/10/backward 2021-07-15T22:02:20,484 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:20,485 /usr/local/include 2021-07-15T22:02:20,485 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:20,485 /usr/include 2021-07-15T22:02:20,485 End of search list. 2021-07-15T22:02:20,485 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:20,486 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:20,486 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:20,500 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:21,876 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:21,877 from include/openbabel/mol.h:43, 2021-07-15T22:02:21,877 from ./src/chiral.cpp:23: 2021-07-15T22:02:21,877 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:21,877 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:21,877 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:21,877 | ^ 2021-07-15T22:02:21,877 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:21,878 37 | # define UNUSED(x) x 2021-07-15T22:02:21,878 | ^ 2021-07-15T22:02:22,543 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:22,544 from ./src/chiral.cpp:23: 2021-07-15T22:02:22,544 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:22,544 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:22,544 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:22,544 | ^ 2021-07-15T22:02:22,544 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:22,545 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:22,545 | ^~~~~~~~ 2021-07-15T22:02:22,547 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:22,547 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:22,548 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:22,548 | ^ 2021-07-15T22:02:22,548 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:22,548 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:22,548 | ^~~~~~~~ 2021-07-15T22:02:22,564 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:22,564 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:22,564 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:22,564 | ^ 2021-07-15T22:02:22,564 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:22,565 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:22,565 | ^~~~~~~~ 2021-07-15T22:02:22,568 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:22,569 from ./src/chiral.cpp:23: 2021-07-15T22:02:22,569 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:22,569 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:22,569 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:22,569 | ^ 2021-07-15T22:02:22,569 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:22,570 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:22,570 | ^~~~~~~~ 2021-07-15T22:02:24,728 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:24,728 from include/openbabel/mol.h:35, 2021-07-15T22:02:24,728 from ./src/chiral.cpp:23: 2021-07-15T22:02:24,728 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:02:24,728 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:24,728 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:24,728 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:25,391 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:25,391 from include/openbabel/mol.h:35, 2021-07-15T22:02:25,392 from ./src/chiral.cpp:23: 2021-07-15T22:02:25,392 /usr/include/c++/10/bits/stl_vector.h: In function ‘double OpenBabel::CalcSignedVolume(OpenBabel::OBMol&, OpenBabel::OBAtom*, bool)’: 2021-07-15T22:02:25,392 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:25,392 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:25,392 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:25,393 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:25,393 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:25,393 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:25,982 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:25,982 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/chiral.o /tmp/ccpWNMQP.s 2021-07-15T22:02:25,987 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:26,253 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:26,254 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:26,254 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/chiral.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:26,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/conformersearch.cpp -o build/temp.linux-armv7l-3.9/./src/conformersearch.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:26,265 Using built-in specs. 2021-07-15T22:02:26,266 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:26,267 Target: arm-linux-gnueabihf 2021-07-15T22:02:26,267 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:26,267 Thread model: posix 2021-07-15T22:02:26,267 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:26,267 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:26,267 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:26,268 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/conformersearch.cpp -quiet -dumpbase conformersearch.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/conformersearch.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cckSkvP6.s 2021-07-15T22:02:26,280 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:26,280 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:26,280 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:26,281 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:26,281 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:26,281 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:26,281 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:26,281 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:26,282 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:26,282 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:26,282 #include "..." search starts here: 2021-07-15T22:02:26,282 #include <...> search starts here: 2021-07-15T22:02:26,282 /usr/include/eigen3 2021-07-15T22:02:26,282 include 2021-07-15T22:02:26,283 /usr/include/python3.9 2021-07-15T22:02:26,283 /usr/include/c++/10 2021-07-15T22:02:26,283 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:26,283 /usr/include/c++/10/backward 2021-07-15T22:02:26,283 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:26,283 /usr/local/include 2021-07-15T22:02:26,283 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:26,284 /usr/include 2021-07-15T22:02:26,284 End of search list. 2021-07-15T22:02:26,284 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:26,284 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:26,284 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:26,300 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:27,820 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:27,820 from include/openbabel/mol.h:43, 2021-07-15T22:02:27,820 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:27,820 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:27,821 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:27,821 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:27,821 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:27,821 | ^ 2021-07-15T22:02:27,821 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:27,821 37 | # define UNUSED(x) x 2021-07-15T22:02:27,822 | ^ 2021-07-15T22:02:28,517 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:28,517 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:28,517 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:28,517 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,517 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,517 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:28,518 | ^ 2021-07-15T22:02:28,518 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:28,518 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:28,518 | ^~~~~~~~ 2021-07-15T22:02:28,520 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,521 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,521 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:28,521 | ^ 2021-07-15T22:02:28,521 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:28,521 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:28,521 | ^~~~~~~~ 2021-07-15T22:02:28,537 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,537 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,537 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:28,537 | ^ 2021-07-15T22:02:28,537 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:28,538 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:28,538 | ^~~~~~~~ 2021-07-15T22:02:28,542 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:28,542 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:28,542 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:28,542 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:28,542 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:28,542 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:28,542 | ^ 2021-07-15T22:02:28,543 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:28,543 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:28,543 | ^~~~~~~~ 2021-07-15T22:02:28,720 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:28,720 from include/openbabel/mol.h:43, 2021-07-15T22:02:28,720 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:28,720 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:28,720 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T22:02:28,720 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T22:02:28,721 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T22:02:28,721 | ^ 2021-07-15T22:02:28,721 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:28,721 37 | # define UNUSED(x) x 2021-07-15T22:02:28,721 | ^ 2021-07-15T22:02:28,721 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T22:02:28,721 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T22:02:28,722 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T22:02:28,722 | ^ 2021-07-15T22:02:28,722 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:28,722 37 | # define UNUSED(x) x 2021-07-15T22:02:28,722 | ^ 2021-07-15T22:02:28,843 In file included from ./src/conformersearch.cpp:20: 2021-07-15T22:02:28,843 include/openbabel/conformersearch.h: At global scope: 2021-07-15T22:02:28,843 include/openbabel/conformersearch.h:576:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:02:28,843 576 | }; 2021-07-15T22:02:28,843 | ^ 2021-07-15T22:02:29,951 In file included from include/openbabel/atom.h:33, 2021-07-15T22:02:29,951 from include/openbabel/mol.h:43, 2021-07-15T22:02:29,952 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:29,952 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:29,952 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:02:29,952 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,952 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,952 | ^ 2021-07-15T22:02:29,952 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,953 37 | # define UNUSED(x) x 2021-07-15T22:02:29,953 | ^ 2021-07-15T22:02:29,953 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:02:29,953 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,953 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,953 | ^ 2021-07-15T22:02:29,954 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,954 37 | # define UNUSED(x) x 2021-07-15T22:02:29,954 | ^ 2021-07-15T22:02:29,954 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:02:29,954 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,954 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,954 | ^ 2021-07-15T22:02:29,955 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,955 37 | # define UNUSED(x) x 2021-07-15T22:02:29,955 | ^ 2021-07-15T22:02:29,955 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:02:29,955 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,955 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,955 | ^ 2021-07-15T22:02:29,955 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,956 37 | # define UNUSED(x) x 2021-07-15T22:02:29,956 | ^ 2021-07-15T22:02:29,956 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:02:29,956 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,956 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,956 | ^ 2021-07-15T22:02:29,956 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,957 37 | # define UNUSED(x) x 2021-07-15T22:02:29,957 | ^ 2021-07-15T22:02:29,957 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:02:29,957 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,957 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,957 | ^ 2021-07-15T22:02:29,957 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,957 37 | # define UNUSED(x) x 2021-07-15T22:02:29,958 | ^ 2021-07-15T22:02:29,958 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:02:29,958 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,958 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,958 | ^ 2021-07-15T22:02:29,958 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,958 37 | # define UNUSED(x) x 2021-07-15T22:02:29,958 | ^ 2021-07-15T22:02:29,959 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:02:29,959 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:29,959 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:29,959 | ^ 2021-07-15T22:02:29,959 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:29,959 37 | # define UNUSED(x) x 2021-07-15T22:02:29,959 | ^ 2021-07-15T22:02:29,965 ./src/conformersearch.cpp: In member function ‘virtual bool OpenBabel::OBStericConformerFilter::IsGood(const OpenBabel::OBMol&, const RotorKey&, double*)’: 2021-07-15T22:02:29,965 ./src/conformersearch.cpp:48:74: warning: unused parameter ‘key’ [-Wunused-parameter] 2021-07-15T22:02:29,965 48 | bool OBStericConformerFilter::IsGood(const OBMol &mol, const RotorKey &key, double *conformer) 2021-07-15T22:02:29,965 | ~~~~~~~~~~~~~~~~^~~ 2021-07-15T22:02:29,973 ./src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T22:02:29,973 ./src/conformersearch.cpp:97:55: warning: unused parameter ‘keys’ [-Wunused-parameter] 2021-07-15T22:02:29,974 97 | const RotorKeys &keys, const std::vector &conformers) 2021-07-15T22:02:29,974 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T22:02:29,990 ./src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T22:02:29,990 ./src/conformersearch.cpp:240:12: warning: unused variable ‘score’ [-Wunused-variable] 2021-07-15T22:02:29,990 240 | double score = ff->Energy(false); // no gradients 2021-07-15T22:02:29,990 | ^~~~~ 2021-07-15T22:02:29,990 ./src/conformersearch.cpp:221:65: warning: unused parameter ‘keys’ [-Wunused-parameter] 2021-07-15T22:02:29,990 221 | const RotorKeys &keys, const std::vector &conformers) 2021-07-15T22:02:29,991 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T22:02:29,998 ./src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: 2021-07-15T22:02:29,999 ./src/conformersearch.cpp:337:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:02:29,999 337 | OBRotorIterator end_it = m_rotorList.EndRotors(); 2021-07-15T22:02:29,999 | ^~~~~~ 2021-07-15T22:02:30,061 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: 2021-07-15T22:02:30,061 ./src/conformersearch.cpp:775:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:02:30,061 775 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) 2021-07-15T22:02:30,061 | ~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:30,066 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: 2021-07-15T22:02:30,066 ./src/conformersearch.cpp:836:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:02:30,066 836 | if (iniche > -1) 2021-07-15T22:02:30,066 | ~~~~~~~^~~~ 2021-07-15T22:02:30,077 ./src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: 2021-07-15T22:02:30,077 ./src/conformersearch.cpp:991:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:02:30,078 991 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) 2021-07-15T22:02:30,078 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:02:30,078 ./src/conformersearch.cpp:1006:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:30,078 1006 | if (dist < min_dist ) 2021-07-15T22:02:30,078 | ~~~~~^~~~~~~~~~ 2021-07-15T22:02:30,078 ./src/conformersearch.cpp:1019:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:02:30,079 1019 | if (imax == -1) 2021-07-15T22:02:30,079 | ~~~~~^~~~~ 2021-07-15T22:02:30,079 ./src/conformersearch.cpp:1035:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:02:30,079 1035 | if (dynamic_niches.size () < nb_niches) 2021-07-15T22:02:30,079 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:02:30,082 ./src/conformersearch.cpp:962:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 2021-07-15T22:02:30,082 962 | bool flag_niched = false; 2021-07-15T22:02:30,082 | ^~~~~~~~~~~ 2021-07-15T22:02:30,090 ./src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: 2021-07-15T22:02:30,091 ./src/conformersearch.cpp:1124:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:30,091 1124 | while (ninsert < ((half_pop * 2) / 3)) 2021-07-15T22:02:30,091 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:30,091 ./src/conformersearch.cpp:1133:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:30,092 1133 | if (iround < imax) 2021-07-15T22:02:30,092 | ~~~~~~~^~~~~~ 2021-07-15T22:02:30,092 ./src/conformersearch.cpp:1141:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:30,092 1141 | if (ninsert >= half_pop) 2021-07-15T22:02:30,092 | ~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:02:30,092 ./src/conformersearch.cpp:1166:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:30,092 1166 | while (ninsert < half_pop) 2021-07-15T22:02:30,093 | ~~~~~~~~^~~~~~~~~~ 2021-07-15T22:02:30,094 ./src/conformersearch.cpp:1090:23: warning: unused variable ‘lowest’ [-Wunused-variable] 2021-07-15T22:02:30,095 1090 | double sum = 0.0, lowest = 0.0, highest = 0.0; 2021-07-15T22:02:30,095 | ^~~~~~ 2021-07-15T22:02:30,095 ./src/conformersearch.cpp:1090:37: warning: unused variable ‘highest’ [-Wunused-variable] 2021-07-15T22:02:30,095 1090 | double sum = 0.0, lowest = 0.0, highest = 0.0; 2021-07-15T22:02:30,095 | ^~~~~~~ 2021-07-15T22:02:30,096 ./src/conformersearch.cpp: At global scope: 2021-07-15T22:02:30,096 ./src/conformersearch.cpp:1243:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:02:30,096 1243 | }; 2021-07-15T22:02:30,096 | ^ 2021-07-15T22:02:33,454 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:33,454 from include/openbabel/ring.h:24, 2021-07-15T22:02:33,454 from include/openbabel/mol.h:51, 2021-07-15T22:02:33,454 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:33,454 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:33,455 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-15T22:02:33,455 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,455 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T22:02:33,455 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:33,514 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:33,514 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,514 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:02:33,514 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:33,514 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,515 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,577 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-15T22:02:33,577 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,577 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T22:02:33,578 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:33,635 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:33,636 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,636 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:02:33,636 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:33,636 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,636 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,714 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T22:02:33,714 from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:33,714 from include/openbabel/ring.h:24, 2021-07-15T22:02:33,714 from include/openbabel/mol.h:51, 2021-07-15T22:02:33,715 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:33,715 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:33,715 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:33,715 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:33,715 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T22:02:33,715 | ^~~~~~~~~~~~~ 2021-07-15T22:02:33,839 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:33,840 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:35,652 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:35,652 from include/openbabel/mol.h:35, 2021-07-15T22:02:35,652 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:35,653 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:35,653 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:02:35,653 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:35,653 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:35,653 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:35,780 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T22:02:35,780 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:35,780 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:35,780 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:35,781 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:35,781 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:35,781 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:35,995 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector&)’: 2021-07-15T22:02:35,995 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:35,995 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:35,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:35,996 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:35,996 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:35,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:36,120 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator]’: 2021-07-15T22:02:36,120 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:36,120 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:36,120 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:36,294 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:36,295 from include/openbabel/ring.h:24, 2021-07-15T22:02:36,295 from include/openbabel/mol.h:51, 2021-07-15T22:02:36,295 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:36,295 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:36,295 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:36,295 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,296 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:02:36,296 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:36,296 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,298 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,298 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:02:36,298 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:36,591 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-15T22:02:36,591 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,591 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:02:36,591 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:36,591 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,594 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:36,594 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:02:36,595 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,245 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:37,246 from include/openbabel/mol.h:35, 2021-07-15T22:02:37,246 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:37,246 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:37,246 /usr/include/c++/10/bits/vector.tcc: In member function ‘int OpenBabel::OBConformerSearch::score_population()’: 2021-07-15T22:02:37,246 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,246 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:37,246 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,247 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:37,247 from include/openbabel/ring.h:24, 2021-07-15T22:02:37,247 from include/openbabel/mol.h:51, 2021-07-15T22:02:37,247 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:37,247 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:37,247 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,247 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:02:37,248 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,248 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:02:37,248 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,248 1976 | __comp); 2021-07-15T22:02:37,248 | ~~~~~~~ 2021-07-15T22:02:37,248 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,248 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:02:37,248 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,249 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,249 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:02:37,249 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,249 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,249 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:02:37,249 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,249 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:02:37,249 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,249 1976 | __comp); 2021-07-15T22:02:37,250 | ~~~~~~~ 2021-07-15T22:02:37,250 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,250 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:02:37,250 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,250 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,250 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:02:37,250 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,700 ./src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::MakeSelection()’: 2021-07-15T22:02:37,701 ./src/conformersearch.cpp:535:31: warning: ‘highest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:02:37,701 535 | double sum = 0.0, lowest, highest; 2021-07-15T22:02:37,701 | ^~~~~~~ 2021-07-15T22:02:37,711 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:37,712 from include/openbabel/mol.h:35, 2021-07-15T22:02:37,712 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:37,712 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:37,712 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,712 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:37,712 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,712 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:37,713 from include/openbabel/ring.h:24, 2021-07-15T22:02:37,713 from include/openbabel/mol.h:51, 2021-07-15T22:02:37,713 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:37,713 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:37,713 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,713 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:02:37,713 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,713 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:02:37,714 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,714 1976 | __comp); 2021-07-15T22:02:37,714 | ~~~~~~~ 2021-07-15T22:02:37,714 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,714 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:02:37,714 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,714 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,715 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:02:37,715 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,715 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,715 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:02:37,715 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,715 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:02:37,715 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,715 1976 | __comp); 2021-07-15T22:02:37,716 | ~~~~~~~ 2021-07-15T22:02:37,716 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,716 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:02:37,716 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:37,716 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:37,716 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:02:37,716 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:40,452 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:02:40,452 from include/openbabel/mol.h:37, 2021-07-15T22:02:40,452 from include/openbabel/conformersearch.h:24, 2021-07-15T22:02:40,452 from ./src/conformersearch.cpp:20: 2021-07-15T22:02:40,453 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::vector; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:02:40,453 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:02:40,453 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:02:40,453 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:41,808 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:41,809 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/conformersearch.o /tmp/cckSkvP6.s 2021-07-15T22:02:41,813 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:43,144 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:43,144 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:43,144 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/conformersearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:43,149 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/confsearch.cpp -o build/temp.linux-armv7l-3.9/./src/confsearch.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:43,160 Using built-in specs. 2021-07-15T22:02:43,161 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:43,161 Target: arm-linux-gnueabihf 2021-07-15T22:02:43,161 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:43,162 Thread model: posix 2021-07-15T22:02:43,162 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:43,162 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:43,162 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:43,163 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/confsearch.cpp -quiet -dumpbase confsearch.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/confsearch.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmRyF3i.s 2021-07-15T22:02:43,175 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:43,175 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:43,176 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:43,176 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:43,176 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:43,177 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:43,177 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:43,177 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:43,177 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:43,178 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:43,178 #include "..." search starts here: 2021-07-15T22:02:43,178 #include <...> search starts here: 2021-07-15T22:02:43,178 /usr/include/eigen3 2021-07-15T22:02:43,178 include 2021-07-15T22:02:43,178 /usr/include/python3.9 2021-07-15T22:02:43,179 /usr/include/c++/10 2021-07-15T22:02:43,179 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:43,179 /usr/include/c++/10/backward 2021-07-15T22:02:43,179 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:43,179 /usr/local/include 2021-07-15T22:02:43,179 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:43,179 /usr/include 2021-07-15T22:02:43,180 End of search list. 2021-07-15T22:02:43,180 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:43,180 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:43,180 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:43,194 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:02:44,731 In file included from include/openbabel/forcefield.h:30, 2021-07-15T22:02:44,731 from ./src/confsearch.cpp:23: 2021-07-15T22:02:44,731 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:02:44,732 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:02:44,732 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:02:44,732 | ^ 2021-07-15T22:02:44,732 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:44,732 37 | # define UNUSED(x) x 2021-07-15T22:02:44,732 | ^ 2021-07-15T22:02:45,445 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:45,446 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:45,446 from ./src/confsearch.cpp:23: 2021-07-15T22:02:45,446 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:45,446 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:45,446 862 | {return new OBVibrationData(*this);} 2021-07-15T22:02:45,446 | ^ 2021-07-15T22:02:45,446 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:02:45,447 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:02:45,447 | ^~~~~~~~ 2021-07-15T22:02:45,449 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:45,449 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:45,449 907 | {return new OBDOSData(*this);} 2021-07-15T22:02:45,450 | ^ 2021-07-15T22:02:45,450 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:02:45,450 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:02:45,450 | ^~~~~~~~ 2021-07-15T22:02:45,466 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:45,466 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:45,466 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:02:45,466 | ^ 2021-07-15T22:02:45,466 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:02:45,467 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:02:45,467 | ^~~~~~~~ 2021-07-15T22:02:45,470 In file included from include/openbabel/mol.h:52, 2021-07-15T22:02:45,471 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:45,471 from ./src/confsearch.cpp:23: 2021-07-15T22:02:45,471 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:02:45,471 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:02:45,471 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:02:45,471 | ^ 2021-07-15T22:02:45,472 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:02:45,472 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:02:45,472 | ^~~~~~~~ 2021-07-15T22:02:45,728 In file included from include/openbabel/forcefield.h:30, 2021-07-15T22:02:45,728 from ./src/confsearch.cpp:23: 2021-07-15T22:02:45,728 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:02:45,728 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,729 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,729 | ^ 2021-07-15T22:02:45,729 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,729 37 | # define UNUSED(x) x 2021-07-15T22:02:45,729 | ^ 2021-07-15T22:02:45,729 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:02:45,730 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,730 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,730 | ^ 2021-07-15T22:02:45,730 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,730 37 | # define UNUSED(x) x 2021-07-15T22:02:45,730 | ^ 2021-07-15T22:02:45,730 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:02:45,731 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,731 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,731 | ^ 2021-07-15T22:02:45,731 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,731 37 | # define UNUSED(x) x 2021-07-15T22:02:45,731 | ^ 2021-07-15T22:02:45,731 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:02:45,732 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,732 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,732 | ^ 2021-07-15T22:02:45,732 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,732 37 | # define UNUSED(x) x 2021-07-15T22:02:45,732 | ^ 2021-07-15T22:02:45,732 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:02:45,732 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,733 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,733 | ^ 2021-07-15T22:02:45,733 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,733 37 | # define UNUSED(x) x 2021-07-15T22:02:45,733 | ^ 2021-07-15T22:02:45,733 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:02:45,733 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,734 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,734 | ^ 2021-07-15T22:02:45,734 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,734 37 | # define UNUSED(x) x 2021-07-15T22:02:45,734 | ^ 2021-07-15T22:02:45,734 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:02:45,734 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,734 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,735 | ^ 2021-07-15T22:02:45,735 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,735 37 | # define UNUSED(x) x 2021-07-15T22:02:45,735 | ^ 2021-07-15T22:02:45,735 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:02:45,735 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:02:45,735 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:02:45,736 | ^ 2021-07-15T22:02:45,736 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,736 37 | # define UNUSED(x) x 2021-07-15T22:02:45,736 | ^ 2021-07-15T22:02:45,767 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T22:02:45,768 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T22:02:45,768 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T22:02:45,768 | ^ 2021-07-15T22:02:45,768 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,768 37 | # define UNUSED(x) x 2021-07-15T22:02:45,768 | ^ 2021-07-15T22:02:45,768 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T22:02:45,769 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T22:02:45,769 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T22:02:45,769 | ^ 2021-07-15T22:02:45,769 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:02:45,769 37 | # define UNUSED(x) x 2021-07-15T22:02:45,769 | ^ 2021-07-15T22:02:47,016 In file included from ./src/confsearch.cpp:28: 2021-07-15T22:02:47,016 include/openbabel/tree/tree_util.hh: At global scope: 2021-07-15T22:02:47,016 include/openbabel/tree/tree_util.hh:86:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:02:47,016 86 | }; 2021-07-15T22:02:47,017 | ^ 2021-07-15T22:02:47,144 ./src/confsearch.cpp: In member function ‘unsigned int OpenBabel::LFSR::GetNext()’: 2021-07-15T22:02:47,145 ./src/confsearch.cpp:86:47: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 2021-07-15T22:02:47,145 86 | _lfsr = (_lfsr >> 1) ^ (unsigned int)(0 - (_lfsr & 1u) & _poly); 2021-07-15T22:02:47,145 | ~~^~~~~~~~~~~~~~ 2021-07-15T22:02:47,155 ./src/confsearch.cpp: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2021-07-15T22:02:47,156 ./src/confsearch.cpp:125:20: warning: ‘OpenBabel::OBDiversePoses::cutoff’ will be initialized after [-Wreorder] 2021-07-15T22:02:47,156 125 | const double cutoff; 2021-07-15T22:02:47,156 | ^~~~~~ 2021-07-15T22:02:47,156 ./src/confsearch.cpp:119:12: warning: ‘bool OpenBabel::OBDiversePoses::_percise’ [-Wreorder] 2021-07-15T22:02:47,156 119 | bool _percise; 2021-07-15T22:02:47,156 | ^~~~~~~~ 2021-07-15T22:02:47,157 ./src/confsearch.cpp:139:3: warning: when initialized here [-Wreorder] 2021-07-15T22:02:47,157 139 | OBDiversePoses::OBDiversePoses(const OBMol &ref, double RMSD, bool percise): 2021-07-15T22:02:47,157 | ^~~~~~~~~~~~~~ 2021-07-15T22:02:47,167 ./src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double, int)’: 2021-07-15T22:02:47,168 ./src/confsearch.cpp:166:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:02:47,168 166 | for (unsigned int a = 0; a < natoms; ++a) 2021-07-15T22:02:47,168 | ~~^~~~~~~~ 2021-07-15T22:02:47,201 ./src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double, int)’: 2021-07-15T22:02:47,201 ./src/confsearch.cpp:205:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 2021-07-15T22:02:47,201 205 | double min_rmsd = DBL_MAX; 2021-07-15T22:02:47,202 | ^~~~~~~~ 2021-07-15T22:02:47,205 ./src/confsearch.cpp:269:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:02:47,206 269 | for (int k = *c; k < levels.size(); ++k) { 2021-07-15T22:02:47,206 | ~~^~~~~~~~~~~~~~~ 2021-07-15T22:02:47,207 ./src/confsearch.cpp: In member function ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’: 2021-07-15T22:02:47,207 ./src/confsearch.cpp:283:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:02:47,208 283 | for (unsigned int a = 0; a < natoms; ++a) 2021-07-15T22:02:47,208 | ~~^~~~~~~~ 2021-07-15T22:02:47,225 ./src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2021-07-15T22:02:47,225 ./src/confsearch.cpp:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:02:47,225 426 | for (int i = 1; i < rl.Size() + 1; ++i, rotor = rl.NextRotor(ri)) { // foreach rotor 2021-07-15T22:02:47,225 | ~~^~~~~~~~~~~~~~~ 2021-07-15T22:02:47,237 ./src/confsearch.cpp:464:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:02:47,237 464 | for (int i = 0 ; i < rotor_sizes.size(); ++i) { 2021-07-15T22:02:47,237 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:47,238 ./src/confsearch.cpp:479:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:02:47,238 479 | } while (combination != 1 && counter < nconfs); // The LFSR always terminates with a 1 2021-07-15T22:02:47,238 | ~~~~~~~~^~~~~~~~ 2021-07-15T22:02:47,242 ./src/confsearch.cpp:402:9: warning: unused variable ‘origLogLevel’ [-Wunused-variable] 2021-07-15T22:02:47,243 402 | int origLogLevel = _loglvl; 2021-07-15T22:02:47,243 | ^~~~~~~~~~~~ 2021-07-15T22:02:51,952 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:51,952 from include/openbabel/ring.h:24, 2021-07-15T22:02:51,952 from include/openbabel/mol.h:51, 2021-07-15T22:02:51,952 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:51,952 from ./src/confsearch.cpp:23: 2021-07-15T22:02:51,952 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred > >]’: 2021-07-15T22:02:51,953 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:51,953 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2021-07-15T22:02:51,953 | ^~~~~~~~~~~ 2021-07-15T22:02:51,953 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:51,990 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:51,990 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:51,990 from ./src/confsearch.cpp:23: 2021-07-15T22:02:51,990 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:02:51,990 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:51,991 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:51,991 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:52,091 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:52,091 from include/openbabel/ring.h:24, 2021-07-15T22:02:52,092 from include/openbabel/mol.h:51, 2021-07-15T22:02:52,092 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:52,092 from ./src/confsearch.cpp:23: 2021-07-15T22:02:52,092 /usr/include/c++/10/bits/stl_algo.h: In constructor ‘OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)’: 2021-07-15T22:02:52,092 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:52,092 914 | return std::__remove_if(__first, __last, 2021-07-15T22:02:52,092 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:52,093 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-15T22:02:52,093 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:52,093 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:52,093 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:52,093 from ./src/confsearch.cpp:23: 2021-07-15T22:02:52,093 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:52,093 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:52,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:52,343 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:52,343 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:52,343 from ./src/confsearch.cpp:23: 2021-07-15T22:02:52,343 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:02:52,343 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:52,343 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:52,343 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:52,396 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:52,396 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:52,396 from ./src/confsearch.cpp:23: 2021-07-15T22:02:52,397 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector OpenBabel::GetHeavyAtomCoords(const OpenBabel::OBMol*, const std::vector&)’: 2021-07-15T22:02:52,397 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:52,397 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:52,397 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:52,427 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector&)’: 2021-07-15T22:02:52,427 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:52,427 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:52,428 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:52,489 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:52,490 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:52,490 from ./src/confsearch.cpp:23: 2021-07-15T22:02:52,490 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::triple >, double, int>&}; _Tp = OpenBabel::triple, double, int>; _Alloc = std::allocator, double, int> >]’: 2021-07-15T22:02:52,490 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double, int> >::iterator’ changed in GCC 7.1 2021-07-15T22:02:52,490 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:52,490 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:52,738 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:02:52,739 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:52,854 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::triple >, double, int>}; _Tp = OpenBabel::triple, double, int>; _Alloc = std::allocator, double, int> >]’: 2021-07-15T22:02:52,854 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, double, int> >::iterator’ changed in GCC 7.1 2021-07-15T22:02:53,082 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:53,082 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:53,082 from ./src/confsearch.cpp:23: 2021-07-15T22:02:53,082 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double, int)’: 2021-07-15T22:02:53,082 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:53,083 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:53,083 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:53,083 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:53,083 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:53,084 from ./src/confsearch.cpp:23: 2021-07-15T22:02:53,084 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:53,084 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:53,084 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:53,478 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(double*, double, int)’: 2021-07-15T22:02:53,479 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:53,479 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:53,479 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:53,555 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:02:53,555 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:02:53,555 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:02:53,555 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:53,700 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:53,700 from include/openbabel/ring.h:24, 2021-07-15T22:02:53,701 from include/openbabel/mol.h:51, 2021-07-15T22:02:53,701 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:53,701 from ./src/confsearch.cpp:23: 2021-07-15T22:02:53,701 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T22:02:53,701 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:53,701 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-15T22:02:53,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:53,772 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T22:02:53,772 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:53,772 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:02:53,772 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:53,772 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:53,917 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T22:02:53,917 from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:53,918 from include/openbabel/ring.h:24, 2021-07-15T22:02:53,918 from include/openbabel/mol.h:51, 2021-07-15T22:02:53,918 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:53,918 from ./src/confsearch.cpp:23: 2021-07-15T22:02:53,918 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Distance = int; _Tp = OpenBabel::triple, double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T22:02:53,918 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:53,918 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T22:02:53,918 | ^~~~~~~~~~~~~ 2021-07-15T22:02:54,027 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T22:02:54,027 /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,027 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, 2021-07-15T22:02:54,027 | ^~~~~~~~~~~ 2021-07-15T22:02:54,028 /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,173 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:54,173 from include/openbabel/ring.h:24, 2021-07-15T22:02:54,173 from include/openbabel/mol.h:51, 2021-07-15T22:02:54,173 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:54,174 from ./src/confsearch.cpp:23: 2021-07-15T22:02:54,174 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, double, int>&, const OpenBabel::triple, double, int>&)>]’: 2021-07-15T22:02:54,174 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,174 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:02:54,174 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,174 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,176 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,177 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:02:54,177 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,177 /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,177 1666 | std::__make_heap(__first, __middle, __comp); 2021-07-15T22:02:54,177 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,513 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:54,513 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:54,513 from ./src/confsearch.cpp:23: 2021-07-15T22:02:54,514 /usr/include/c++/10/bits/stl_vector.h: In function ‘void OpenBabel::UpdateConformersFromTree(OpenBabel::OBMol*, std::vector&, OpenBabel::OBDiversePoses*, bool, bool, bool, std::vector*)’: 2021-07-15T22:02:54,514 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,514 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:54,514 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:54,514 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:02:54,514 from include/openbabel/ring.h:24, 2021-07-15T22:02:54,514 from include/openbabel/mol.h:51, 2021-07-15T22:02:54,515 from include/openbabel/forcefield.h:31, 2021-07-15T22:02:54,515 from ./src/confsearch.cpp:23: 2021-07-15T22:02:54,515 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,515 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:02:54,515 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,515 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:02:54,515 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,515 1976 | __comp); 2021-07-15T22:02:54,516 | ~~~~~~~ 2021-07-15T22:02:54,516 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,516 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:02:54,516 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,516 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,516 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:02:54,516 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:54,517 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:54,517 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:54,517 from ./src/confsearch.cpp:23: 2021-07-15T22:02:54,517 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double, int>*, std::vector, double, int> > >’ changed in GCC 7.1 2021-07-15T22:02:54,517 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:54,517 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:54,517 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:54,518 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:54,518 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:55,054 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:02:55,054 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:55,054 from ./src/confsearch.cpp:23: 2021-07-15T22:02:55,054 /usr/include/c++/10/bits/vector.tcc: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: 2021-07-15T22:02:55,054 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:55,055 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:02:55,055 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:02:55,057 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:02:55,057 from include/openbabel/forcefield.h:23, 2021-07-15T22:02:55,057 from ./src/confsearch.cpp:23: 2021-07-15T22:02:55,057 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:55,057 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:55,058 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:56,884 /usr/include/c++/10/bits/stl_vector.h: In member function ‘int OpenBabel::OBForceField::ScreenByRMSD(double, double, short int, OpenBabel::OBBitVec, bool)’: 2021-07-15T22:02:56,885 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:56,885 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:56,885 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:56,885 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:02:56,885 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:02:56,885 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:02:58,255 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:58,255 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/confsearch.o /tmp/ccmRyF3i.s 2021-07-15T22:02:58,260 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:02:59,374 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:02:59,374 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:02:59,374 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/confsearch.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:59,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/data.cpp -o build/temp.linux-armv7l-3.9/./src/data.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:02:59,391 Using built-in specs. 2021-07-15T22:02:59,393 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:02:59,394 Target: arm-linux-gnueabihf 2021-07-15T22:02:59,394 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:02:59,394 Thread model: posix 2021-07-15T22:02:59,394 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:02:59,394 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:02:59,395 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:02:59,395 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/data.cpp -quiet -dumpbase data.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/data.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccT3xzYE.s 2021-07-15T22:02:59,408 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:59,408 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:59,409 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:59,409 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:02:59,409 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:02:59,409 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:02:59,409 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:02:59,409 ignoring duplicate directory "/usr/include/" 2021-07-15T22:02:59,410 as it is a non-system directory that duplicates a system directory 2021-07-15T22:02:59,410 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:02:59,410 #include "..." search starts here: 2021-07-15T22:02:59,410 #include <...> search starts here: 2021-07-15T22:02:59,411 /usr/include/eigen3 2021-07-15T22:02:59,411 include 2021-07-15T22:02:59,411 /usr/include/python3.9 2021-07-15T22:02:59,411 /usr/include/c++/10 2021-07-15T22:02:59,411 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:02:59,411 /usr/include/c++/10/backward 2021-07-15T22:02:59,412 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:02:59,412 /usr/local/include 2021-07-15T22:02:59,412 /usr/include/arm-linux-gnueabihf 2021-07-15T22:02:59,412 /usr/include 2021-07-15T22:02:59,412 End of search list. 2021-07-15T22:02:59,412 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:02:59,412 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:02:59,413 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:02:59,428 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:00,924 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:00,924 from include/openbabel/mol.h:43, 2021-07-15T22:03:00,924 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:00,924 from ./src/data.cpp:22: 2021-07-15T22:03:00,924 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:00,925 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:00,925 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:00,925 | ^ 2021-07-15T22:03:00,925 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:00,925 37 | # define UNUSED(x) x 2021-07-15T22:03:00,925 | ^ 2021-07-15T22:03:01,555 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:01,556 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:01,556 from ./src/data.cpp:22: 2021-07-15T22:03:01,556 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:01,556 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:01,556 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:01,556 | ^ 2021-07-15T22:03:01,556 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:01,557 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:01,557 | ^~~~~~~~ 2021-07-15T22:03:01,560 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:01,560 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:01,560 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:01,560 | ^ 2021-07-15T22:03:01,560 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:01,561 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:01,561 | ^~~~~~~~ 2021-07-15T22:03:01,579 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:01,579 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:01,579 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:01,579 | ^ 2021-07-15T22:03:01,579 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:01,580 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:01,580 | ^~~~~~~~ 2021-07-15T22:03:01,584 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:01,584 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:01,584 from ./src/data.cpp:22: 2021-07-15T22:03:01,584 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:01,585 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:01,585 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:01,585 | ^ 2021-07-15T22:03:01,585 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:01,585 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:01,585 | ^~~~~~~~ 2021-07-15T22:03:02,194 ./src/data.cpp: In member function ‘bool OpenBabel::OBResidueData::AssignBonds(OpenBabel::OBMol&, OpenBabel::OBBitVec&)’: 2021-07-15T22:03:02,194 ./src/data.cpp:810:56: warning: unused parameter ‘bv’ [-Wunused-parameter] 2021-07-15T22:03:02,194 810 | bool OBResidueData::AssignBonds(OBMol &mol,OBBitVec &bv) 2021-07-15T22:03:02,194 | ~~~~~~~~~~^~ 2021-07-15T22:03:06,644 In file included from /usr/include/string.h:495, 2021-07-15T22:03:06,644 from /usr/include/c++/10/cstring:42, 2021-07-15T22:03:06,644 from include/openbabel/data.h:26, 2021-07-15T22:03:06,644 from ./src/data.cpp:21: 2021-07-15T22:03:06,645 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:03:06,645 inlined from ‘OpenBabel::OBElement::OBElement(int, const char*, double, double, double, int, double, double, double, double, double, double, double, std::string)’ at include/openbabel/data.h:118:18, 2021-07-15T22:03:06,645 inlined from ‘virtual void OpenBabel::OBElementTable::ParseLine(const char*)’ at ./src/data.cpp:117:79: 2021-07-15T22:03:06,645 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 2021-07-15T22:03:06,645 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:03:06,645 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:06,730 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:06,730 from include/openbabel/data.h:28, 2021-07-15T22:03:06,730 from ./src/data.cpp:21: 2021-07-15T22:03:06,730 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T22:03:06,731 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:03:06,731 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:06,731 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:06,981 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:03:06,982 from include/openbabel/data.h:28, 2021-07-15T22:03:06,982 from ./src/data.cpp:21: 2021-07-15T22:03:06,982 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void OpenBabel::OBIsotopeTable::ParseLine(const char*)’: 2021-07-15T22:03:06,982 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:06,982 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:06,982 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:07,244 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:07,245 from include/openbabel/data.h:28, 2021-07-15T22:03:07,245 from ./src/data.cpp:21: 2021-07-15T22:03:07,245 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAtomHOF&}; _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator]’: 2021-07-15T22:03:07,245 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:07,245 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:07,245 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:07,756 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:03:07,757 from include/openbabel/data.h:28, 2021-07-15T22:03:07,757 from ./src/data.cpp:21: 2021-07-15T22:03:07,757 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)’: 2021-07-15T22:03:07,757 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:07,757 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:07,757 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:09,854 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:09,854 from include/openbabel/data.h:28, 2021-07-15T22:03:09,855 from ./src/data.cpp:21: 2021-07-15T22:03:09,855 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:03:09,855 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:09,855 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:09,855 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:09,855 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:09,907 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector OpenBabel::OBElementTable::GetRGB(int)’: 2021-07-15T22:03:09,907 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:09,907 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:09,908 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:09,908 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:09,908 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:09,908 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:12,145 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:12,145 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/data.o /tmp/ccT3xzYE.s 2021-07-15T22:03:12,150 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:13,481 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:13,482 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:13,482 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:13,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/data_utilities.cpp -o build/temp.linux-armv7l-3.9/./src/data_utilities.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:13,497 Using built-in specs. 2021-07-15T22:03:13,498 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:13,499 Target: arm-linux-gnueabihf 2021-07-15T22:03:13,499 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:13,499 Thread model: posix 2021-07-15T22:03:13,499 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:13,499 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:13,500 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:13,500 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/data_utilities.cpp -quiet -dumpbase data_utilities.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/data_utilities.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTIpOsg.s 2021-07-15T22:03:13,515 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:13,515 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:13,516 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:13,516 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:13,516 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:13,516 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:13,517 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:13,517 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:13,517 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:13,517 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:13,517 #include "..." search starts here: 2021-07-15T22:03:13,518 #include <...> search starts here: 2021-07-15T22:03:13,518 /usr/include/eigen3 2021-07-15T22:03:13,518 include 2021-07-15T22:03:13,518 /usr/include/python3.9 2021-07-15T22:03:13,518 /usr/include/c++/10 2021-07-15T22:03:13,518 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:13,519 /usr/include/c++/10/backward 2021-07-15T22:03:13,519 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:13,519 /usr/local/include 2021-07-15T22:03:13,519 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:13,519 /usr/include 2021-07-15T22:03:13,519 End of search list. 2021-07-15T22:03:13,520 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:13,520 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:13,520 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:13,537 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:14,882 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:14,883 from include/openbabel/mol.h:43, 2021-07-15T22:03:14,883 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:14,883 from ./src/data_utilities.cpp:23: 2021-07-15T22:03:14,883 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:14,883 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:14,883 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:14,884 | ^ 2021-07-15T22:03:14,884 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:14,884 37 | # define UNUSED(x) x 2021-07-15T22:03:14,884 | ^ 2021-07-15T22:03:15,577 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:15,578 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:15,578 from ./src/data_utilities.cpp:23: 2021-07-15T22:03:15,578 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:15,578 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:15,578 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:15,578 | ^ 2021-07-15T22:03:15,579 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:15,579 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:15,579 | ^~~~~~~~ 2021-07-15T22:03:15,581 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:15,582 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:15,582 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:15,582 | ^ 2021-07-15T22:03:15,582 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:15,582 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:15,582 | ^~~~~~~~ 2021-07-15T22:03:15,598 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:15,598 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:15,598 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:15,598 | ^ 2021-07-15T22:03:15,598 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:15,598 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:15,599 | ^~~~~~~~ 2021-07-15T22:03:15,602 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:15,603 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:15,603 from ./src/data_utilities.cpp:23: 2021-07-15T22:03:15,603 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:15,603 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:15,603 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:15,603 | ^ 2021-07-15T22:03:15,603 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:15,604 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:15,604 | ^~~~~~~~ 2021-07-15T22:03:15,875 ./src/data_utilities.cpp: In function ‘bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)’: 2021-07-15T22:03:15,875 ./src/data_utilities.cpp:121:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:03:15,875 121 | for(int i = 0; (i::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:03:17,062 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:03:17,062 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:17,062 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:17,206 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:03:17,207 from include/openbabel/mol.h:35, 2021-07-15T22:03:17,207 from include/openbabel/data_utilities.h:25, 2021-07-15T22:03:17,207 from ./src/data_utilities.cpp:23: 2021-07-15T22:03:17,207 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector&)’: 2021-07-15T22:03:17,207 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:17,207 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:17,207 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:17,208 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:17,208 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:17,208 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:17,208 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:17,208 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:17,208 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:17,208 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:17,209 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:17,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:17,209 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:03:17,209 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:17,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:17,567 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:17,569 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/data_utilities.o /tmp/ccTIpOsg.s 2021-07-15T22:03:17,575 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:17,692 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:17,692 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:17,692 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/data_utilities.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:17,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/asciipainter.cpp -o build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:17,703 Using built-in specs. 2021-07-15T22:03:17,703 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:17,704 Target: arm-linux-gnueabihf 2021-07-15T22:03:17,704 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:17,704 Thread model: posix 2021-07-15T22:03:17,704 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:17,704 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:17,704 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:17,704 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/asciipainter.cpp -quiet -dumpbase asciipainter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/asciipainter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccx0XO7s.s 2021-07-15T22:03:17,716 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:17,717 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:17,717 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:17,717 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:17,718 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:17,718 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:17,718 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:17,718 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:17,719 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:17,719 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:17,719 #include "..." search starts here: 2021-07-15T22:03:17,719 #include <...> search starts here: 2021-07-15T22:03:17,719 /usr/include/eigen3 2021-07-15T22:03:17,720 include 2021-07-15T22:03:17,720 /usr/include/python3.9 2021-07-15T22:03:17,720 /usr/include/c++/10 2021-07-15T22:03:17,720 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:17,720 /usr/include/c++/10/backward 2021-07-15T22:03:17,720 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:17,721 /usr/local/include 2021-07-15T22:03:17,721 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:17,721 /usr/include 2021-07-15T22:03:17,721 End of search list. 2021-07-15T22:03:17,721 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:17,722 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:17,722 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:17,738 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:18,801 In file included from ./src/depict/asciipainter.cpp:19: 2021-07-15T22:03:18,801 include/openbabel/depict/asciipainter.h: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontFamily(const string&)’: 2021-07-15T22:03:18,801 include/openbabel/depict/asciipainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:03:18,801 34 | void SetFontFamily(const std::string &fontFamily) {} 2021-07-15T22:03:18,802 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:03:18,813 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontSize(int)’: 2021-07-15T22:03:18,814 ./src/depict/asciipainter.cpp:54:38: warning: unused parameter ‘pointSize’ [-Wunused-parameter] 2021-07-15T22:03:18,814 54 | void ASCIIPainter::SetFontSize(int pointSize) 2021-07-15T22:03:18,814 | ~~~~^~~~~~~~~ 2021-07-15T22:03:18,814 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFillColor(const OpenBabel::OBColor&)’: 2021-07-15T22:03:18,815 ./src/depict/asciipainter.cpp:58:50: warning: unused parameter ‘color’ [-Wunused-parameter] 2021-07-15T22:03:18,815 58 | void ASCIIPainter::SetFillColor(const OBColor &color) 2021-07-15T22:03:18,815 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:03:18,815 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFillRadial(const OpenBabel::OBColor&, const OpenBabel::OBColor&)’: 2021-07-15T22:03:18,815 ./src/depict/asciipainter.cpp:62:51: warning: unused parameter ‘start’ [-Wunused-parameter] 2021-07-15T22:03:18,815 62 | void ASCIIPainter::SetFillRadial(const OBColor &start, const OBColor &end) 2021-07-15T22:03:18,815 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:03:18,816 ./src/depict/asciipainter.cpp:62:73: warning: unused parameter ‘end’ [-Wunused-parameter] 2021-07-15T22:03:18,816 62 | void ASCIIPainter::SetFillRadial(const OBColor &start, const OBColor &end) 2021-07-15T22:03:18,816 | ~~~~~~~~~~~~~~~^~~ 2021-07-15T22:03:18,816 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetPenColor(const OpenBabel::OBColor&)’: 2021-07-15T22:03:18,816 ./src/depict/asciipainter.cpp:67:49: warning: unused parameter ‘color’ [-Wunused-parameter] 2021-07-15T22:03:18,816 67 | void ASCIIPainter::SetPenColor(const OBColor &color) 2021-07-15T22:03:18,816 | ~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:03:18,816 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::SetPenWidth(double)’: 2021-07-15T22:03:18,817 ./src/depict/asciipainter.cpp:71:41: warning: unused parameter ‘width’ [-Wunused-parameter] 2021-07-15T22:03:18,817 71 | void ASCIIPainter::SetPenWidth(double width) 2021-07-15T22:03:18,817 | ~~~~~~~^~~~~ 2021-07-15T22:03:18,841 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawLine(double, double, double, double, const std::vector&)’: 2021-07-15T22:03:18,842 ./src/depict/asciipainter.cpp:80:103: warning: unused parameter ‘dashes’ [-Wunused-parameter] 2021-07-15T22:03:18,842 80 | void ASCIIPainter::DrawLine(double x1, double y1, double x2, double y2, const std::vector & dashes) 2021-07-15T22:03:18,842 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:03:18,861 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawCircle(double, double, double)’: 2021-07-15T22:03:18,862 ./src/depict/asciipainter.cpp:106:40: warning: unused parameter ‘x’ [-Wunused-parameter] 2021-07-15T22:03:18,862 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T22:03:18,862 | ~~~~~~~^ 2021-07-15T22:03:18,862 ./src/depict/asciipainter.cpp:106:50: warning: unused parameter ‘y’ [-Wunused-parameter] 2021-07-15T22:03:18,862 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T22:03:18,862 | ~~~~~~~^ 2021-07-15T22:03:18,862 ./src/depict/asciipainter.cpp:106:60: warning: unused parameter ‘r’ [-Wunused-parameter] 2021-07-15T22:03:18,862 106 | void ASCIIPainter::DrawCircle(double x, double y, double r) 2021-07-15T22:03:18,863 | ~~~~~~~^ 2021-07-15T22:03:18,863 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawBall(double, double, double, double)’: 2021-07-15T22:03:18,863 ./src/depict/asciipainter.cpp:110:38: warning: unused parameter ‘x’ [-Wunused-parameter] 2021-07-15T22:03:18,863 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T22:03:18,863 | ~~~~~~~^ 2021-07-15T22:03:18,863 ./src/depict/asciipainter.cpp:110:48: warning: unused parameter ‘y’ [-Wunused-parameter] 2021-07-15T22:03:18,863 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T22:03:18,863 | ~~~~~~~^ 2021-07-15T22:03:18,863 ./src/depict/asciipainter.cpp:110:58: warning: unused parameter ‘r’ [-Wunused-parameter] 2021-07-15T22:03:18,864 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T22:03:18,864 | ~~~~~~~^ 2021-07-15T22:03:18,864 ./src/depict/asciipainter.cpp:110:68: warning: unused parameter ‘opacity’ [-Wunused-parameter] 2021-07-15T22:03:18,864 110 | void ASCIIPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T22:03:18,864 | ~~~~~~~^~~~~~~ 2021-07-15T22:03:18,864 ./src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const string&)’: 2021-07-15T22:03:18,864 ./src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:03:18,864 118 | for (int i=0; i search starts here: 2021-07-15T22:03:20,851 /usr/include/eigen3 2021-07-15T22:03:20,851 include 2021-07-15T22:03:20,851 /usr/include/python3.9 2021-07-15T22:03:20,851 /usr/include/c++/10 2021-07-15T22:03:20,852 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:20,852 /usr/include/c++/10/backward 2021-07-15T22:03:20,852 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:20,852 /usr/local/include 2021-07-15T22:03:20,852 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:20,853 /usr/include 2021-07-15T22:03:20,853 End of search list. 2021-07-15T22:03:20,854 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:20,854 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:20,855 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:20,875 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:21,924 In file included from ./src/depict/commandpainter.cpp:19: 2021-07-15T22:03:21,925 include/openbabel/depict/commandpainter.h: In member function ‘virtual void OpenBabel::CommandPainter::SetFontFamily(const string&)’: 2021-07-15T22:03:21,925 include/openbabel/depict/commandpainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:03:21,925 34 | void SetFontFamily(const std::string &fontFamily) {} // FIXME 2021-07-15T22:03:21,925 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:03:21,969 ./src/depict/commandpainter.cpp: In member function ‘virtual void OpenBabel::CommandPainter::DrawBall(double, double, double, double)’: 2021-07-15T22:03:21,969 ./src/depict/commandpainter.cpp:115:70: warning: unused parameter ‘opacity’ [-Wunused-parameter] 2021-07-15T22:03:21,969 115 | void CommandPainter::DrawBall(double x, double y, double r, double opacity) 2021-07-15T22:03:21,969 | ~~~~~~~^~~~~~~ 2021-07-15T22:03:21,973 ./src/depict/commandpainter.cpp: In member function ‘virtual OpenBabel::OBFontMetrics OpenBabel::CommandPainter::GetFontMetrics(const string&)’: 2021-07-15T22:03:21,973 ./src/depict/commandpainter.cpp:125:67: warning: unused parameter ‘text’ [-Wunused-parameter] 2021-07-15T22:03:21,973 125 | OBFontMetrics CommandPainter::GetFontMetrics(const std::string &text) 2021-07-15T22:03:21,973 | ~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-15T22:03:22,554 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:22,554 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o /tmp/cc2bYb5H.s 2021-07-15T22:03:22,561 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:22,657 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:22,657 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:22,657 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/commandpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:22,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/depict.cpp -o build/temp.linux-armv7l-3.9/./src/depict/depict.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:22,667 Using built-in specs. 2021-07-15T22:03:22,668 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:22,669 Target: arm-linux-gnueabihf 2021-07-15T22:03:22,669 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:22,669 Thread model: posix 2021-07-15T22:03:22,669 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:22,670 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:22,670 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:22,670 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/depict.cpp -quiet -dumpbase depict.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/depict.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccUD480U.s 2021-07-15T22:03:22,682 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:22,682 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:22,682 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:22,683 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:22,683 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:22,683 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:22,683 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:22,684 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:22,684 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:22,684 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:22,684 #include "..." search starts here: 2021-07-15T22:03:22,684 #include <...> search starts here: 2021-07-15T22:03:22,685 /usr/include/eigen3 2021-07-15T22:03:22,685 include 2021-07-15T22:03:22,685 /usr/include/python3.9 2021-07-15T22:03:22,685 /usr/include/c++/10 2021-07-15T22:03:22,685 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:22,685 /usr/include/c++/10/backward 2021-07-15T22:03:22,686 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:22,686 /usr/local/include 2021-07-15T22:03:22,686 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:22,686 /usr/include 2021-07-15T22:03:22,686 End of search list. 2021-07-15T22:03:22,686 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:22,687 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:22,687 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:22,704 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:24,090 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:24,091 from include/openbabel/mol.h:43, 2021-07-15T22:03:24,091 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:24,091 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:24,091 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:24,091 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:24,092 | ^ 2021-07-15T22:03:24,092 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:24,092 37 | # define UNUSED(x) x 2021-07-15T22:03:24,092 | ^ 2021-07-15T22:03:24,786 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:24,787 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:24,787 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:24,787 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:24,787 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:24,787 | ^ 2021-07-15T22:03:24,787 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:24,787 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:24,788 | ^~~~~~~~ 2021-07-15T22:03:24,790 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:24,790 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:24,790 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:24,791 | ^ 2021-07-15T22:03:24,791 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:24,791 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:24,791 | ^~~~~~~~ 2021-07-15T22:03:24,807 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:24,807 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:24,807 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:24,807 | ^ 2021-07-15T22:03:24,807 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:24,807 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:24,808 | ^~~~~~~~ 2021-07-15T22:03:24,811 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:24,812 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:24,812 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:24,812 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:24,812 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:24,812 | ^ 2021-07-15T22:03:24,812 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:24,813 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:24,813 | ^~~~~~~~ 2021-07-15T22:03:25,303 ./src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OpenBabel::OBAtom*)’: 2021-07-15T22:03:25,303 ./src/depict/depict.cpp:280:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 2021-07-15T22:03:25,304 280 | int nclasses = end_pos - copy_sym.begin(); 2021-07-15T22:03:25,304 | ^~~~~~~~ 2021-07-15T22:03:25,479 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtom(OpenBabel::OBAtom*)’: 2021-07-15T22:03:25,479 ./src/depict/depict.cpp:839:42: warning: unused parameter ‘atom’ [-Wunused-parameter] 2021-07-15T22:03:25,479 839 | void OBDepictPrivate::DrawAtom(OBAtom *atom) 2021-07-15T22:03:25,479 | ~~~~~~~~^~~~ 2021-07-15T22:03:25,485 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const string&, int, const OpenBabel::vector3&)’: 2021-07-15T22:03:25,486 ./src/depict/depict.cpp:966:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:25,486 966 | OBFontMetrics metrics = painter->GetFontMetrics(str); 2021-07-15T22:03:25,486 | ^~~~~~~ 2021-07-15T22:03:25,486 ./src/depict/depict.cpp:971:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:03:25,487 971 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); 2021-07-15T22:03:25,487 | ^~~~~~~ 2021-07-15T22:03:25,495 ./src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawSimpleBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, int, bool)’: 2021-07-15T22:03:25,495 ./src/depict/depict.cpp:1011:36: warning: unused parameter ‘crossed_bond’ [-Wunused-parameter] 2021-07-15T22:03:25,495 1011 | OBAtom* endAtom, int order, bool crossed_bond) 2021-07-15T22:03:25,496 | ~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:25,515 ./src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: 2021-07-15T22:03:25,515 ./src/depict/depict.cpp:1133:152: warning: unused parameter ‘center’ [-Wunused-parameter] 2021-07-15T22:03:25,515 1133 | inline void OBDepictPrivateBallAndStick::DrawAromaticRingBond(OBAtom *prevAtom, OBAtom *beginAtom, OBAtom *endAtom, OBAtom *nextAtom, const vector3 ¢er, double dist) 2021-07-15T22:03:25,515 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:03:31,285 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:31,285 from include/openbabel/mol.h:35, 2021-07-15T22:03:31,285 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:31,285 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T22:03:31,285 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:03:31,286 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:31,286 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,331 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T22:03:31,331 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:03:31,373 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T22:03:31,373 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,373 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,373 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,374 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,374 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,374 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,374 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,374 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,374 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,430 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T22:03:31,431 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,431 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,431 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,431 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,431 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,431 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,432 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,432 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:31,432 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,499 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:31,500 from include/openbabel/ring.h:24, 2021-07-15T22:03:31,500 from include/openbabel/mol.h:51, 2021-07-15T22:03:31,500 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:31,500 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T22:03:31,500 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,500 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:03:31,501 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,501 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,533 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T22:03:31,533 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,533 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-15T22:03:31,533 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,533 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,533 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,534 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,534 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,534 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,573 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T22:03:31,573 from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:31,573 from include/openbabel/ring.h:24, 2021-07-15T22:03:31,573 from include/openbabel/mol.h:51, 2021-07-15T22:03:31,574 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:31,574 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T22:03:31,574 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,574 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T22:03:31,574 | ^~~~~~~~~~~~~ 2021-07-15T22:03:31,640 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:31,640 from include/openbabel/ring.h:24, 2021-07-15T22:03:31,640 from include/openbabel/mol.h:51, 2021-07-15T22:03:31,640 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:31,640 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const std::pair&)>]’: 2021-07-15T22:03:31,640 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,641 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:03:31,641 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,641 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,641 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,641 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,641 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-15T22:03:31,641 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:31,642 1925 | __comp); 2021-07-15T22:03:31,642 | ~~~~~~~ 2021-07-15T22:03:31,642 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,642 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:31,642 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:03:31,642 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:32,262 ./src/depict/depict.cpp: In member function ‘bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: 2021-07-15T22:03:32,262 ./src/depict/depict.cpp:423:25: warning: ‘max_z’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,263 423 | d->zScale = max_z - min_z; 2021-07-15T22:03:32,263 | ~~~~~~^~~~~~~ 2021-07-15T22:03:32,263 ./src/depict/depict.cpp:423:25: warning: ‘min_z’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,263 ./src/depict/depict.cpp:421:22: warning: ‘max_y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,263 421 | height = max_y - min_y + 2*margin; 2021-07-15T22:03:32,263 | ~~~~~~^~~~~~~ 2021-07-15T22:03:32,264 ./src/depict/depict.cpp:421:22: warning: ‘min_y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,264 ./src/depict/depict.cpp:420:22: warning: ‘max_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,264 420 | width = max_x - min_x + 2*margin; 2021-07-15T22:03:32,264 | ~~~~~~^~~~~~~ 2021-07-15T22:03:32,264 ./src/depict/depict.cpp:420:22: warning: ‘min_x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:03:32,298 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:03:32,299 from include/openbabel/mol.h:35, 2021-07-15T22:03:32,299 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:32,299 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:32,299 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:03:32,299 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:03:32,299 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:03:32,300 from include/openbabel/ring.h:24, 2021-07-15T22:03:32,300 from include/openbabel/mol.h:51, 2021-07-15T22:03:32,300 from ./src/depict/depict.cpp:20: 2021-07-15T22:03:32,300 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:32,300 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:03:32,300 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:03:32,300 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:03:32,300 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:32,301 1976 | __comp); 2021-07-15T22:03:32,301 | ~~~~~~~ 2021-07-15T22:03:32,301 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:32,301 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:03:32,301 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:32,301 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:32,301 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:03:32,302 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:34,657 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:34,658 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/depict.o /tmp/ccUD480U.s 2021-07-15T22:03:34,662 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:35,546 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:35,547 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:35,547 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/depict.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:35,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/depict/svgpainter.cpp -o build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:35,561 Using built-in specs. 2021-07-15T22:03:35,563 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:35,563 Target: arm-linux-gnueabihf 2021-07-15T22:03:35,563 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:35,563 Thread model: posix 2021-07-15T22:03:35,563 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:35,564 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:35,564 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:35,564 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/depict/svgpainter.cpp -quiet -dumpbase svgpainter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdlbQy6.s 2021-07-15T22:03:35,578 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:35,578 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:35,579 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:35,579 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:35,579 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:35,580 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:35,580 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:35,580 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:35,580 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:35,580 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:35,581 #include "..." search starts here: 2021-07-15T22:03:35,581 #include <...> search starts here: 2021-07-15T22:03:35,581 /usr/include/eigen3 2021-07-15T22:03:35,581 include 2021-07-15T22:03:35,581 /usr/include/python3.9 2021-07-15T22:03:35,581 /usr/include/c++/10 2021-07-15T22:03:35,581 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:35,582 /usr/include/c++/10/backward 2021-07-15T22:03:35,582 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:35,582 /usr/local/include 2021-07-15T22:03:35,582 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:35,582 /usr/include 2021-07-15T22:03:35,582 End of search list. 2021-07-15T22:03:35,583 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:35,583 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:35,583 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:35,598 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:36,930 In file included from ./src/depict/svgpainter.cpp:18: 2021-07-15T22:03:36,931 include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: 2021-07-15T22:03:36,931 include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 2021-07-15T22:03:36,931 77 | int m_fontPointSize; 2021-07-15T22:03:36,931 | ^~~~~~~~~~~~~~~ 2021-07-15T22:03:36,931 include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 2021-07-15T22:03:36,932 75 | bool m_isFillcolor; 2021-07-15T22:03:36,932 | ^~~~~~~~~~~~~ 2021-07-15T22:03:36,932 ./src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 2021-07-15T22:03:36,932 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, 2021-07-15T22:03:36,932 | ^~~~~~~~~~ 2021-07-15T22:03:36,932 In file included from ./src/depict/svgpainter.cpp:18: 2021-07-15T22:03:36,932 include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 2021-07-15T22:03:36,933 75 | bool m_isFillcolor; 2021-07-15T22:03:36,933 | ^~~~~~~~~~~~~ 2021-07-15T22:03:36,933 include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 2021-07-15T22:03:36,933 74 | std::set *m_Gradients; 2021-07-15T22:03:36,933 | ^~~~~~~~~~~ 2021-07-15T22:03:36,933 ./src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 2021-07-15T22:03:36,933 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, 2021-07-15T22:03:36,933 | ^~~~~~~~~~ 2021-07-15T22:03:37,028 ./src/depict/svgpainter.cpp: In member function ‘void OpenBabel::SVGPainter::WriteImage(const string&)’: 2021-07-15T22:03:37,028 ./src/depict/svgpainter.cpp:172:50: warning: unused parameter ‘filename’ [-Wunused-parameter] 2021-07-15T22:03:37,028 172 | void SVGPainter::WriteImage(const std::string &filename) 2021-07-15T22:03:37,028 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:03:38,758 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:38,758 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o /tmp/ccdlbQy6.s 2021-07-15T22:03:38,763 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:38,987 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:38,988 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:38,988 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/depict/svgpainter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:38,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptor.cpp -o build/temp.linux-armv7l-3.9/./src/descriptor.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:38,998 Using built-in specs. 2021-07-15T22:03:38,999 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:38,999 Target: arm-linux-gnueabihf 2021-07-15T22:03:38,999 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:38,999 Thread model: posix 2021-07-15T22:03:38,999 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:38,999 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:39,000 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:39,000 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptor.cpp -quiet -dumpbase descriptor.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptor.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc6qlV1o.s 2021-07-15T22:03:39,012 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:39,012 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:39,013 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:39,013 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:39,013 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:39,013 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:39,013 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:39,014 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:39,014 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:39,014 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:39,014 #include "..." search starts here: 2021-07-15T22:03:39,014 #include <...> search starts here: 2021-07-15T22:03:39,014 /usr/include/eigen3 2021-07-15T22:03:39,015 include 2021-07-15T22:03:39,015 /usr/include/python3.9 2021-07-15T22:03:39,015 /usr/include/c++/10 2021-07-15T22:03:39,015 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:39,015 /usr/include/c++/10/backward 2021-07-15T22:03:39,015 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:39,016 /usr/local/include 2021-07-15T22:03:39,016 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:39,016 /usr/include 2021-07-15T22:03:39,016 End of search list. 2021-07-15T22:03:39,016 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:39,016 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:39,017 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:39,032 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:40,450 In file included from include/openbabel/generic.h:31, 2021-07-15T22:03:40,451 from ./src/descriptor.cpp:21: 2021-07-15T22:03:40,451 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:40,451 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:40,451 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:40,451 | ^ 2021-07-15T22:03:40,452 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:40,452 37 | # define UNUSED(x) x 2021-07-15T22:03:40,452 | ^ 2021-07-15T22:03:40,642 In file included from ./src/descriptor.cpp:21: 2021-07-15T22:03:40,642 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:40,643 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:40,643 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:40,643 | ^ 2021-07-15T22:03:40,643 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:40,643 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:40,643 | ^~~~~~~~ 2021-07-15T22:03:40,646 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:40,647 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:40,647 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:40,647 | ^ 2021-07-15T22:03:40,647 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:40,647 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:40,647 | ^~~~~~~~ 2021-07-15T22:03:40,665 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:40,665 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:40,665 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:40,665 | ^ 2021-07-15T22:03:40,665 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:40,666 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:40,666 | ^~~~~~~~ 2021-07-15T22:03:40,669 In file included from ./src/descriptor.cpp:21: 2021-07-15T22:03:40,670 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:40,670 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:40,670 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:40,670 | ^ 2021-07-15T22:03:40,670 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:40,670 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:40,670 | ^~~~~~~~ 2021-07-15T22:03:44,359 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:44,360 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptor.o /tmp/cc6qlV1o.s 2021-07-15T22:03:44,365 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:44,771 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:44,771 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:44,772 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:44,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/cansmidescriptor.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:44,784 Using built-in specs. 2021-07-15T22:03:44,785 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:44,786 Target: arm-linux-gnueabihf 2021-07-15T22:03:44,786 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:44,786 Thread model: posix 2021-07-15T22:03:44,786 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:44,786 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:44,787 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:44,790 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/cansmidescriptor.cpp -quiet -dumpbase cansmidescriptor.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccClzKqG.s 2021-07-15T22:03:44,802 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:44,803 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:44,803 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:44,804 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:44,804 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:44,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:44,804 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:44,804 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:44,805 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:44,805 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:44,805 #include "..." search starts here: 2021-07-15T22:03:44,805 #include <...> search starts here: 2021-07-15T22:03:44,805 /usr/include/eigen3 2021-07-15T22:03:44,805 include 2021-07-15T22:03:44,805 /usr/include/python3.9 2021-07-15T22:03:44,806 /usr/include/c++/10 2021-07-15T22:03:44,806 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:44,806 /usr/include/c++/10/backward 2021-07-15T22:03:44,806 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:44,806 /usr/local/include 2021-07-15T22:03:44,806 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:44,806 /usr/include 2021-07-15T22:03:44,807 End of search list. 2021-07-15T22:03:44,807 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:44,807 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:44,807 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:44,821 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:46,237 ./src/descriptors/cansmidescriptor.cpp: In member function ‘virtual bool OpenBabel::CanSmiles::Compare(OpenBabel::OBBase*, std::istream&, bool, std::string*)’: 2021-07-15T22:03:46,238 ./src/descriptors/cansmidescriptor.cpp:42:80: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:03:46,238 42 | bool CanSmiles::Compare(OBBase* pOb, istream& optionText, bool noEval, string* param) 2021-07-15T22:03:46,238 | ~~~~~~~~^~~~~ 2021-07-15T22:03:47,303 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:47,304 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o /tmp/ccClzKqG.s 2021-07-15T22:03:47,309 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:47,434 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:47,435 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:47,435 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cansmidescriptor.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:47,436 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/cmpdfilter.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:47,445 Using built-in specs. 2021-07-15T22:03:47,446 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:47,447 Target: arm-linux-gnueabihf 2021-07-15T22:03:47,447 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:47,447 Thread model: posix 2021-07-15T22:03:47,447 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:47,447 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:47,448 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:47,448 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/cmpdfilter.cpp -quiet -dumpbase cmpdfilter.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccrsWUyU.s 2021-07-15T22:03:47,461 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:47,462 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:47,462 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:47,463 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:47,463 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:47,463 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:47,463 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:47,463 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:47,464 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:47,464 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:47,464 #include "..." search starts here: 2021-07-15T22:03:47,464 #include <...> search starts here: 2021-07-15T22:03:47,464 /usr/include/eigen3 2021-07-15T22:03:47,464 include 2021-07-15T22:03:47,465 /usr/include/python3.9 2021-07-15T22:03:47,465 /usr/include/c++/10 2021-07-15T22:03:47,465 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:47,465 /usr/include/c++/10/backward 2021-07-15T22:03:47,465 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:47,465 /usr/local/include 2021-07-15T22:03:47,465 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:47,466 /usr/include 2021-07-15T22:03:47,466 End of search list. 2021-07-15T22:03:47,466 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:47,466 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:47,466 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:47,480 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:48,728 ./src/descriptors/cmpdfilter.cpp: In member function ‘virtual bool OpenBabel::CompoundFilter::Compare(OpenBabel::OBBase*, std::istream&, bool, std::string*)’: 2021-07-15T22:03:48,728 ./src/descriptors/cmpdfilter.cpp:74:68: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:03:48,729 74 | virtual bool Compare(OBBase* pOb, istream&, bool noEval, string* param) 2021-07-15T22:03:48,729 | ~~~~~~~~^~~~~ 2021-07-15T22:03:49,857 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:49,858 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o /tmp/ccrsWUyU.s 2021-07-15T22:03:49,863 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:50,003 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:50,003 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:50,003 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/cmpdfilter.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:50,004 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/filters.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/filters.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:50,013 Using built-in specs. 2021-07-15T22:03:50,014 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:50,014 Target: arm-linux-gnueabihf 2021-07-15T22:03:50,015 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:50,015 Thread model: posix 2021-07-15T22:03:50,015 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:50,015 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:50,016 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:50,016 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/filters.cpp -quiet -dumpbase filters.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/filters.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccjDV23a.s 2021-07-15T22:03:50,029 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:50,030 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:50,030 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:50,030 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:50,030 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:50,031 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:50,031 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:50,031 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:50,031 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:50,032 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:50,032 #include "..." search starts here: 2021-07-15T22:03:50,032 #include <...> search starts here: 2021-07-15T22:03:50,032 /usr/include/eigen3 2021-07-15T22:03:50,032 include 2021-07-15T22:03:50,033 /usr/include/python3.9 2021-07-15T22:03:50,033 /usr/include/c++/10 2021-07-15T22:03:50,033 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:50,033 /usr/include/c++/10/backward 2021-07-15T22:03:50,033 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:50,033 /usr/local/include 2021-07-15T22:03:50,034 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:50,034 /usr/include 2021-07-15T22:03:50,034 End of search list. 2021-07-15T22:03:50,034 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:50,034 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:50,034 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:50,048 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:51,464 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:51,465 from include/openbabel/mol.h:43, 2021-07-15T22:03:51,465 from ./src/descriptors/filters.cpp:21: 2021-07-15T22:03:51,465 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:51,465 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:51,465 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:51,466 | ^ 2021-07-15T22:03:51,466 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:51,466 37 | # define UNUSED(x) x 2021-07-15T22:03:51,466 | ^ 2021-07-15T22:03:52,101 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:52,101 from ./src/descriptors/filters.cpp:21: 2021-07-15T22:03:52,101 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:52,101 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:52,101 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:52,101 | ^ 2021-07-15T22:03:52,102 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:52,102 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:52,102 | ^~~~~~~~ 2021-07-15T22:03:52,104 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:52,105 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:52,105 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:52,105 | ^ 2021-07-15T22:03:52,105 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:52,105 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:52,105 | ^~~~~~~~ 2021-07-15T22:03:52,121 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:52,121 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:52,121 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:52,122 | ^ 2021-07-15T22:03:52,122 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:52,122 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:52,122 | ^~~~~~~~ 2021-07-15T22:03:52,126 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:52,126 from ./src/descriptors/filters.cpp:21: 2021-07-15T22:03:52,126 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:52,126 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:52,127 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:52,127 | ^ 2021-07-15T22:03:52,127 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:52,127 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:52,127 | ^~~~~~~~ 2021-07-15T22:03:52,414 ./src/descriptors/filters.cpp: In member function ‘virtual double OpenBabel::MWFilter::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T22:03:52,414 ./src/descriptors/filters.cpp:36:47: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:03:52,415 36 | virtual double Predict(OBBase* pOb, string* param=NULL) 2021-07-15T22:03:52,415 | ^ 2021-07-15T22:03:52,422 ./src/descriptors/filters.cpp: In member function ‘virtual double OpenBabel::FormulaDescriptor::GetStringValue(OpenBabel::OBBase*, std::string&, std::string*)’: 2021-07-15T22:03:52,422 ./src/descriptors/filters.cpp:142:80: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:03:52,422 142 | virtual double GetStringValue(OBBase* pOb, std::string& svalue, std::string* param=NULL) 2021-07-15T22:03:52,422 | ^ 2021-07-15T22:03:54,555 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:54,556 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/filters.o /tmp/ccjDV23a.s 2021-07-15T22:03:54,561 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:03:54,736 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:03:54,736 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:03:54,736 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/filters.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:54,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/groupcontrib.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:03:54,747 Using built-in specs. 2021-07-15T22:03:54,748 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:03:54,748 Target: arm-linux-gnueabihf 2021-07-15T22:03:54,748 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:03:54,748 Thread model: posix 2021-07-15T22:03:54,749 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:03:54,749 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:03:54,749 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:03:54,749 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/groupcontrib.cpp -quiet -dumpbase groupcontrib.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccc2X3Eo.s 2021-07-15T22:03:54,760 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:54,760 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:54,761 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:54,761 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:03:54,761 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:03:54,761 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:03:54,761 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:03:54,762 ignoring duplicate directory "/usr/include/" 2021-07-15T22:03:54,762 as it is a non-system directory that duplicates a system directory 2021-07-15T22:03:54,762 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:03:54,762 #include "..." search starts here: 2021-07-15T22:03:54,762 #include <...> search starts here: 2021-07-15T22:03:54,762 /usr/include/eigen3 2021-07-15T22:03:54,762 include 2021-07-15T22:03:54,763 /usr/include/python3.9 2021-07-15T22:03:54,763 /usr/include/c++/10 2021-07-15T22:03:54,763 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:03:54,763 /usr/include/c++/10/backward 2021-07-15T22:03:54,763 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:03:54,763 /usr/local/include 2021-07-15T22:03:54,763 /usr/include/arm-linux-gnueabihf 2021-07-15T22:03:54,764 /usr/include 2021-07-15T22:03:54,764 End of search list. 2021-07-15T22:03:54,764 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:03:54,764 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:03:54,764 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:03:54,779 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:03:56,131 In file included from include/openbabel/atom.h:33, 2021-07-15T22:03:56,131 from include/openbabel/mol.h:43, 2021-07-15T22:03:56,132 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T22:03:56,132 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:03:56,132 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:03:56,132 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:03:56,132 | ^ 2021-07-15T22:03:56,132 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:03:56,132 37 | # define UNUSED(x) x 2021-07-15T22:03:56,133 | ^ 2021-07-15T22:03:56,831 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:56,832 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T22:03:56,832 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:56,832 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:56,832 862 | {return new OBVibrationData(*this);} 2021-07-15T22:03:56,832 | ^ 2021-07-15T22:03:56,832 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:03:56,832 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:03:56,832 | ^~~~~~~~ 2021-07-15T22:03:56,833 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:56,833 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:56,833 907 | {return new OBDOSData(*this);} 2021-07-15T22:03:56,833 | ^ 2021-07-15T22:03:56,833 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:03:56,833 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:03:56,833 | ^~~~~~~~ 2021-07-15T22:03:56,846 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:56,846 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:56,846 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:03:56,847 | ^ 2021-07-15T22:03:56,847 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:03:56,847 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:03:56,847 | ^~~~~~~~ 2021-07-15T22:03:56,852 In file included from include/openbabel/mol.h:52, 2021-07-15T22:03:56,852 from ./src/descriptors/groupcontrib.cpp:27: 2021-07-15T22:03:56,852 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:03:56,852 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:03:56,853 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:03:56,853 | ^ 2021-07-15T22:03:56,853 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:03:56,853 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:03:56,853 | ^~~~~~~~ 2021-07-15T22:03:57,222 ./src/descriptors/groupcontrib.cpp: In member function ‘virtual double OpenBabel::OBGroupContrib::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T22:03:57,223 ./src/descriptors/groupcontrib.cpp:106:55: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:03:57,223 106 | double OBGroupContrib::Predict(OBBase* pOb, string* param) 2021-07-15T22:03:57,223 | ~~~~~~~~^~~~~ 2021-07-15T22:03:59,544 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:03:59,544 from ./src/descriptors/groupcontrib.cpp:25: 2021-07-15T22:03:59,545 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-15T22:03:59,545 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-15T22:03:59,545 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:03:59,545 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:59,668 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBGroupContrib::ParseFile()’: 2021-07-15T22:03:59,668 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:59,668 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:59,668 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:03:59,669 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-15T22:03:59,669 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:03:59,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:00,950 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:00,952 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o /tmp/ccc2X3Eo.s 2021-07-15T22:04:00,959 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:01,309 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:01,309 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:01,309 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/groupcontrib.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:01,312 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/descriptors/smartsdescriptors.cpp -o build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:01,323 Using built-in specs. 2021-07-15T22:04:01,324 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:01,324 Target: arm-linux-gnueabihf 2021-07-15T22:04:01,325 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:01,325 Thread model: posix 2021-07-15T22:04:01,325 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:01,325 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:01,326 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:01,329 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/descriptors/smartsdescriptors.cpp -quiet -dumpbase smartsdescriptors.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccApLAcD.s 2021-07-15T22:04:01,343 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:01,343 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:01,344 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:01,345 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:01,345 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:01,346 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:01,346 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:01,346 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:01,347 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:01,347 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:01,347 #include "..." search starts here: 2021-07-15T22:04:01,347 #include <...> search starts here: 2021-07-15T22:04:01,348 /usr/include/eigen3 2021-07-15T22:04:01,348 include 2021-07-15T22:04:01,348 /usr/include/python3.9 2021-07-15T22:04:01,348 /usr/include/c++/10 2021-07-15T22:04:01,348 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:01,349 /usr/include/c++/10/backward 2021-07-15T22:04:01,349 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:01,349 /usr/local/include 2021-07-15T22:04:01,349 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:01,349 /usr/include 2021-07-15T22:04:01,350 End of search list. 2021-07-15T22:04:01,351 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:01,361 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:01,362 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:01,367 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:02,800 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:02,800 from include/openbabel/mol.h:43, 2021-07-15T22:04:02,801 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T22:04:02,801 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:02,801 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:02,801 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:02,801 | ^ 2021-07-15T22:04:02,801 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:02,801 37 | # define UNUSED(x) x 2021-07-15T22:04:02,801 | ^ 2021-07-15T22:04:03,433 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:03,433 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T22:04:03,433 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:03,433 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:03,433 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:03,434 | ^ 2021-07-15T22:04:03,434 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:03,434 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:03,434 | ^~~~~~~~ 2021-07-15T22:04:03,438 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:03,438 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:03,438 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:03,438 | ^ 2021-07-15T22:04:03,438 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:03,439 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:03,439 | ^~~~~~~~ 2021-07-15T22:04:03,455 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:03,456 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:03,456 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:03,456 | ^ 2021-07-15T22:04:03,456 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:03,456 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:03,456 | ^~~~~~~~ 2021-07-15T22:04:03,461 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:03,461 from ./src/descriptors/smartsdescriptors.cpp:21: 2021-07-15T22:04:03,462 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:03,462 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:03,462 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:03,462 | ^ 2021-07-15T22:04:03,462 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:03,462 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:03,462 | ^~~~~~~~ 2021-07-15T22:04:03,654 ./src/descriptors/smartsdescriptors.cpp: In member function ‘virtual double OpenBabel::SmartsDescriptor::Predict(OpenBabel::OBBase*, std::string*)’: 2021-07-15T22:04:03,654 ./src/descriptors/smartsdescriptors.cpp:48:41: warning: unused parameter ‘param’ [-Wunused-parameter] 2021-07-15T22:04:03,655 48 | double Predict(OBBase* pOb, string* param=NULL) 2021-07-15T22:04:03,655 | ^ 2021-07-15T22:04:05,548 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:05,548 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o /tmp/ccApLAcD.s 2021-07-15T22:04:05,553 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:05,699 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:05,699 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:05,699 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/descriptors/smartsdescriptors.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:05,701 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/distgeom.cpp -o build/temp.linux-armv7l-3.9/./src/distgeom.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:05,709 Using built-in specs. 2021-07-15T22:04:05,711 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:05,711 Target: arm-linux-gnueabihf 2021-07-15T22:04:05,711 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:05,711 Thread model: posix 2021-07-15T22:04:05,712 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:05,712 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:05,713 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:05,715 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/distgeom.cpp -quiet -dumpbase distgeom.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/distgeom.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccaeyMc5.s 2021-07-15T22:04:05,730 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:05,730 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:05,731 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:05,732 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:05,732 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:05,733 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:05,733 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:05,733 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:05,734 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:05,734 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:05,734 #include "..." search starts here: 2021-07-15T22:04:05,734 #include <...> search starts here: 2021-07-15T22:04:05,734 /usr/include/eigen3 2021-07-15T22:04:05,735 include 2021-07-15T22:04:05,735 /usr/include/python3.9 2021-07-15T22:04:05,735 /usr/include/c++/10 2021-07-15T22:04:05,735 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:05,735 /usr/include/c++/10/backward 2021-07-15T22:04:05,736 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:05,736 /usr/local/include 2021-07-15T22:04:05,736 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:05,736 /usr/include 2021-07-15T22:04:05,736 End of search list. 2021-07-15T22:04:05,738 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:05,738 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:05,738 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:05,755 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:06,260 ./src/distgeom.cpp:37: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 2021-07-15T22:04:06,260 37 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data 2021-07-15T22:04:06,260 | 2021-07-15T22:04:06,260 ./src/distgeom.cpp:38: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 2021-07-15T22:04:06,260 38 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' 2021-07-15T22:04:06,261 | 2021-07-15T22:04:06,263 ./src/distgeom.cpp:524:3: warning: multi-line comment [-Wcomment] 2021-07-15T22:04:06,263 524 | // \ 2021-07-15T22:04:06,264 | ^ 2021-07-15T22:04:06,266 ./src/distgeom.cpp:881:9: warning: multi-line comment [-Wcomment] 2021-07-15T22:04:06,266 881 | // / \ 2021-07-15T22:04:06,266 | ^ 2021-07-15T22:04:07,276 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:07,276 from include/openbabel/mol.h:43, 2021-07-15T22:04:07,276 from include/openbabel/distgeom.h:24, 2021-07-15T22:04:07,277 from ./src/distgeom.cpp:20: 2021-07-15T22:04:07,277 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:07,277 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:07,277 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:07,277 | ^ 2021-07-15T22:04:07,277 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:07,277 37 | # define UNUSED(x) x 2021-07-15T22:04:07,277 | ^ 2021-07-15T22:04:07,973 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:07,974 from include/openbabel/distgeom.h:24, 2021-07-15T22:04:07,974 from ./src/distgeom.cpp:20: 2021-07-15T22:04:07,974 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:07,974 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:07,974 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:07,974 | ^ 2021-07-15T22:04:07,974 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:07,975 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:07,975 | ^~~~~~~~ 2021-07-15T22:04:07,978 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:07,979 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:07,979 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:07,979 | ^ 2021-07-15T22:04:07,979 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:07,979 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:07,979 | ^~~~~~~~ 2021-07-15T22:04:07,996 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:07,996 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:07,996 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:07,997 | ^ 2021-07-15T22:04:07,997 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:07,997 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:07,997 | ^~~~~~~~ 2021-07-15T22:04:08,002 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:08,002 from include/openbabel/distgeom.h:24, 2021-07-15T22:04:08,002 from ./src/distgeom.cpp:20: 2021-07-15T22:04:08,002 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:08,003 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:08,003 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:08,003 | ^ 2021-07-15T22:04:08,003 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:08,003 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:08,003 | ^~~~~~~~ 2021-07-15T22:04:09,212 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::Set14Bounds()’: 2021-07-15T22:04:09,212 ./src/distgeom.cpp:479:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,212 479 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T22:04:09,213 ./src/distgeom.cpp:479:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,213 479 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T22:04:09,214 ./src/distgeom.cpp:486:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,214 486 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T22:04:09,215 ./src/distgeom.cpp:486:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,215 486 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T22:04:09,216 ./src/distgeom.cpp:500:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,216 500 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T22:04:09,217 ./src/distgeom.cpp:500:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,217 500 | if (nbr->GetIdx() == path[a] || nbr->GetIdx() == path[c]) 2021-07-15T22:04:09,218 ./src/distgeom.cpp:506:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,218 506 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T22:04:09,219 ./src/distgeom.cpp:506:59: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:09,219 506 | if (nbr->GetIdx() == path[d] || nbr->GetIdx() == path[b]) 2021-07-15T22:04:09,220 ./src/distgeom.cpp:386:18: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-15T22:04:09,220 386 | unsigned int i, j; 2021-07-15T22:04:09,220 | ^ 2021-07-15T22:04:09,220 ./src/distgeom.cpp:386:21: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-15T22:04:09,220 386 | unsigned int i, j; 2021-07-15T22:04:09,220 | ^ 2021-07-15T22:04:09,221 ./src/distgeom.cpp:426:19: warning: unused variable ‘bond_id’ [-Wunused-variable] 2021-07-15T22:04:09,221 426 | OBStereo::Ref bond_id; 2021-07-15T22:04:09,221 | ^~~~~~~ 2021-07-15T22:04:09,227 ./src/distgeom.cpp: In member function ‘OpenBabel::OBCisTransStereo* OpenBabel::OBDistanceGeometry::GetCisTransStereo(OpenBabel::OBBond*)’: 2021-07-15T22:04:09,228 ./src/distgeom.cpp:584:19: warning: unused variable ‘bond_id’ [-Wunused-variable] 2021-07-15T22:04:09,228 584 | OBStereo::Ref bond_id; 2021-07-15T22:04:09,228 | ^~~~~~~ 2021-07-15T22:04:09,235 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::Set15Bounds()’: 2021-07-15T22:04:09,236 ./src/distgeom.cpp:614:18: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-15T22:04:09,236 614 | unsigned int i, j; 2021-07-15T22:04:09,236 | ^ 2021-07-15T22:04:09,236 ./src/distgeom.cpp:614:21: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-15T22:04:09,236 614 | unsigned int i, j; 2021-07-15T22:04:09,236 | ^ 2021-07-15T22:04:09,244 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::TriangleSmooth(int)’: 2021-07-15T22:04:09,244 ./src/distgeom.cpp:745:9: warning: unused variable ‘loopCount’ [-Wunused-variable] 2021-07-15T22:04:09,244 745 | int loopCount = 0; 2021-07-15T22:04:09,244 | ^~~~~~~~~ 2021-07-15T22:04:09,245 ./src/distgeom.cpp:742:47: warning: unused parameter ‘iterations’ [-Wunused-parameter] 2021-07-15T22:04:09,245 742 | void OBDistanceGeometry::TriangleSmooth(int iterations) 2021-07-15T22:04:09,245 | ~~~~^~~~~~~~~~ 2021-07-15T22:04:09,308 ./src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::AddConformer()’: 2021-07-15T22:04:09,308 ./src/distgeom.cpp:1105:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:09,308 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T22:04:09,309 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:04:09,309 ./src/distgeom.cpp:1105:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:09,309 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T22:04:09,309 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:04:09,310 ./src/distgeom.cpp:1105:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:09,310 1105 | if (a->GetIdx() == origin || a->GetIdx() == second || a->GetIdx() == third) 2021-07-15T22:04:09,310 | ~~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:04:09,315 ./src/distgeom.cpp:1039:18: warning: unused variable ‘attempts’ [-Wunused-variable] 2021-07-15T22:04:09,315 1039 | unsigned int attempts = 0; 2021-07-15T22:04:09,315 | ^~~~~~~~ 2021-07-15T22:04:18,812 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:18,813 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/distgeom.o /tmp/ccaeyMc5.s 2021-07-15T22:04:18,819 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:19,962 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:19,962 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:19,962 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/distgeom.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:19,970 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/doxygen_pages.cpp -o build/temp.linux-armv7l-3.9/./src/doxygen_pages.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:19,976 Using built-in specs. 2021-07-15T22:04:19,978 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:19,978 Target: arm-linux-gnueabihf 2021-07-15T22:04:19,978 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:19,978 Thread model: posix 2021-07-15T22:04:19,979 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:19,979 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:19,980 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:19,983 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/doxygen_pages.cpp -quiet -dumpbase doxygen_pages.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/doxygen_pages.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpdRVXv.s 2021-07-15T22:04:19,997 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:19,997 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:19,997 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:19,998 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:19,998 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:19,998 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:19,998 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:19,999 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:19,999 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:19,999 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:19,999 #include "..." search starts here: 2021-07-15T22:04:19,999 #include <...> search starts here: 2021-07-15T22:04:19,999 /usr/include/eigen3 2021-07-15T22:04:20,000 include 2021-07-15T22:04:20,000 /usr/include/python3.9 2021-07-15T22:04:20,000 /usr/include/c++/10 2021-07-15T22:04:20,000 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:20,000 /usr/include/c++/10/backward 2021-07-15T22:04:20,000 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:20,001 /usr/local/include 2021-07-15T22:04:20,001 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:20,001 /usr/include 2021-07-15T22:04:20,001 End of search list. 2021-07-15T22:04:20,001 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:20,001 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:20,002 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:20,018 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:20,037 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:20,037 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/doxygen_pages.o /tmp/ccpdRVXv.s 2021-07-15T22:04:20,042 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:20,056 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:20,057 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:20,057 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/doxygen_pages.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:20,058 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprint.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprint.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:20,067 Using built-in specs. 2021-07-15T22:04:20,068 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:20,069 Target: arm-linux-gnueabihf 2021-07-15T22:04:20,069 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:20,069 Thread model: posix 2021-07-15T22:04:20,069 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:20,069 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:20,069 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:20,069 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprint.cpp -quiet -dumpbase fingerprint.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprint.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccB189wI.s 2021-07-15T22:04:20,081 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:20,081 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:20,081 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:20,082 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:20,082 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:20,082 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:20,082 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:20,082 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:20,082 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:20,083 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:20,083 #include "..." search starts here: 2021-07-15T22:04:20,083 #include <...> search starts here: 2021-07-15T22:04:20,083 /usr/include/eigen3 2021-07-15T22:04:20,084 include 2021-07-15T22:04:20,084 /usr/include/python3.9 2021-07-15T22:04:20,084 /usr/include/c++/10 2021-07-15T22:04:20,084 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:20,084 /usr/include/c++/10/backward 2021-07-15T22:04:20,084 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:20,085 /usr/local/include 2021-07-15T22:04:20,085 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:20,085 /usr/include 2021-07-15T22:04:20,085 End of search list. 2021-07-15T22:04:20,085 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:20,086 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:20,086 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:20,102 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:21,592 ./src/fingerprint.cpp: In member function ‘bool OpenBabel::FastSearch::Find(OpenBabel::OBBase*, std::vector&, unsigned int)’: 2021-07-15T22:04:21,593 ./src/fingerprint.cpp:161:48: warning: operation on ‘ppat’ may be undefined [-Wsequence-point] 2021-07-15T22:04:21,593 161 | if ( (a=((*ppat) & (*p++)) ^ (*ppat++)) ) break; 2021-07-15T22:04:21,593 | ~~~~^~ 2021-07-15T22:04:21,593 ./src/fingerprint.cpp:161:48: warning: operation on ‘ppat’ may be undefined [-Wsequence-point] 2021-07-15T22:04:24,012 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:24,012 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprint.o /tmp/ccB189wI.s 2021-07-15T22:04:24,017 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:24,290 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:24,290 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:24,290 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprint.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:24,292 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/finger2.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:24,303 Using built-in specs. 2021-07-15T22:04:24,304 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:24,304 Target: arm-linux-gnueabihf 2021-07-15T22:04:24,304 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:24,305 Thread model: posix 2021-07-15T22:04:24,305 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:24,305 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:24,305 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:24,305 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/finger2.cpp -quiet -dumpbase finger2.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccuQRuzX.s 2021-07-15T22:04:24,318 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:24,319 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:24,319 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:24,320 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:24,320 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:24,320 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:24,320 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:24,321 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:24,321 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:24,321 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:24,321 #include "..." search starts here: 2021-07-15T22:04:24,321 #include <...> search starts here: 2021-07-15T22:04:24,322 /usr/include/eigen3 2021-07-15T22:04:24,322 include 2021-07-15T22:04:24,322 /usr/include/python3.9 2021-07-15T22:04:24,322 /usr/include/c++/10 2021-07-15T22:04:24,322 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:24,322 /usr/include/c++/10/backward 2021-07-15T22:04:24,322 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:24,323 /usr/local/include 2021-07-15T22:04:24,323 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:24,323 /usr/include 2021-07-15T22:04:24,323 End of search list. 2021-07-15T22:04:24,323 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:24,323 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:24,324 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:24,339 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:25,695 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:25,695 from include/openbabel/mol.h:43, 2021-07-15T22:04:25,695 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T22:04:25,695 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:25,696 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:25,696 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:25,696 | ^ 2021-07-15T22:04:25,696 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:25,696 37 | # define UNUSED(x) x 2021-07-15T22:04:25,696 | ^ 2021-07-15T22:04:26,393 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:26,394 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T22:04:26,394 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:26,394 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:26,394 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:26,394 | ^ 2021-07-15T22:04:26,394 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:26,394 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:26,395 | ^~~~~~~~ 2021-07-15T22:04:26,397 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:26,397 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:26,397 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:26,398 | ^ 2021-07-15T22:04:26,398 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:26,398 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:26,398 | ^~~~~~~~ 2021-07-15T22:04:26,414 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:26,414 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:26,414 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:26,414 | ^ 2021-07-15T22:04:26,414 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:26,415 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:26,415 | ^~~~~~~~ 2021-07-15T22:04:26,418 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:26,419 from ./src/fingerprints/finger2.cpp:20: 2021-07-15T22:04:26,419 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:26,419 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:26,419 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:26,419 | ^ 2021-07-15T22:04:26,419 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:26,420 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:26,420 | ^~~~~~~~ 2021-07-15T22:04:26,648 ./src/fingerprints/finger2.cpp: In member function ‘virtual std::string OpenBabel::fingerprint2::DescribeBits(std::vector, bool)’: 2021-07-15T22:04:26,648 ./src/fingerprints/finger2.cpp:63:68: warning: unused parameter ‘fp’ [-Wunused-parameter] 2021-07-15T22:04:26,648 63 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T22:04:26,648 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2021-07-15T22:04:26,649 ./src/fingerprints/finger2.cpp:63:77: warning: unused parameter ‘bSet’ [-Wunused-parameter] 2021-07-15T22:04:26,649 63 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T22:04:26,649 | ~~~~~^~~~~~~~~ 2021-07-15T22:04:30,676 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:30,676 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o /tmp/ccuQRuzX.s 2021-07-15T22:04:30,682 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:31,057 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:31,057 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:31,057 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:31,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/finger3.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:31,068 Using built-in specs. 2021-07-15T22:04:31,069 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:31,069 Target: arm-linux-gnueabihf 2021-07-15T22:04:31,069 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:31,070 Thread model: posix 2021-07-15T22:04:31,070 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:31,070 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:31,070 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:31,070 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/finger3.cpp -quiet -dumpbase finger3.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4Obpha.s 2021-07-15T22:04:31,080 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:31,081 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:31,081 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:31,081 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:31,081 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:31,082 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:31,082 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:31,082 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:31,082 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:31,082 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:31,082 #include "..." search starts here: 2021-07-15T22:04:31,083 #include <...> search starts here: 2021-07-15T22:04:31,083 /usr/include/eigen3 2021-07-15T22:04:31,083 include 2021-07-15T22:04:31,083 /usr/include/python3.9 2021-07-15T22:04:31,083 /usr/include/c++/10 2021-07-15T22:04:31,083 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:31,083 /usr/include/c++/10/backward 2021-07-15T22:04:31,084 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:31,084 /usr/local/include 2021-07-15T22:04:31,084 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:31,084 /usr/include 2021-07-15T22:04:31,084 End of search list. 2021-07-15T22:04:31,085 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:31,085 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:31,085 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:31,101 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:32,451 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:32,452 from include/openbabel/mol.h:43, 2021-07-15T22:04:32,452 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T22:04:32,452 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:32,452 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:32,452 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:32,452 | ^ 2021-07-15T22:04:32,452 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:32,453 37 | # define UNUSED(x) x 2021-07-15T22:04:32,453 | ^ 2021-07-15T22:04:33,149 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:33,150 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T22:04:33,150 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:33,150 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:33,150 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:33,150 | ^ 2021-07-15T22:04:33,150 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:33,150 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:33,151 | ^~~~~~~~ 2021-07-15T22:04:33,153 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:33,153 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:33,153 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:33,154 | ^ 2021-07-15T22:04:33,154 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:33,154 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:33,154 | ^~~~~~~~ 2021-07-15T22:04:33,170 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:33,170 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:33,170 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:33,170 | ^ 2021-07-15T22:04:33,170 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:33,170 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:33,171 | ^~~~~~~~ 2021-07-15T22:04:33,174 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:33,175 from ./src/fingerprints/finger3.cpp:19: 2021-07-15T22:04:33,175 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:33,175 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:33,175 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:33,175 | ^ 2021-07-15T22:04:33,175 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:33,175 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:33,176 | ^~~~~~~~ 2021-07-15T22:04:33,399 ./src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: 2021-07-15T22:04:33,399 ./src/fingerprints/finger3.cpp:108:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:33,399 108 | while(n < _bitcount) 2021-07-15T22:04:33,399 | ~~^~~~~~~~~~~ 2021-07-15T22:04:33,417 ./src/fingerprints/finger3.cpp: In member function ‘virtual std::string OpenBabel::PatternFP::DescribeBits(std::vector, bool)’: 2021-07-15T22:04:33,417 ./src/fingerprints/finger3.cpp:257:34: warning: operation on ‘div’ may be undefined [-Wsequence-point] 2021-07-15T22:04:33,417 257 | ngrp = (num + div -1)/div--; //rounds up 2021-07-15T22:04:33,417 | ~~~^~ 2021-07-15T22:04:33,417 ./src/fingerprints/finger3.cpp:257:34: warning: operation on ‘div’ may be undefined [-Wsequence-point] 2021-07-15T22:04:38,157 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:38,158 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o /tmp/cc4Obpha.s 2021-07-15T22:04:38,163 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:38,642 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:38,642 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:38,642 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/finger3.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:38,645 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/fingerprints/fingerecfp.cpp -o build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:38,654 Using built-in specs. 2021-07-15T22:04:38,654 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:38,655 Target: arm-linux-gnueabihf 2021-07-15T22:04:38,655 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:38,655 Thread model: posix 2021-07-15T22:04:38,655 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:38,655 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:38,655 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:38,656 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/fingerprints/fingerecfp.cpp -quiet -dumpbase fingerecfp.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBQrN9n.s 2021-07-15T22:04:38,667 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:38,668 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:38,668 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:38,668 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:38,669 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:38,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:38,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:38,669 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:38,669 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:38,669 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:38,670 #include "..." search starts here: 2021-07-15T22:04:38,670 #include <...> search starts here: 2021-07-15T22:04:38,670 /usr/include/eigen3 2021-07-15T22:04:38,670 include 2021-07-15T22:04:38,670 /usr/include/python3.9 2021-07-15T22:04:38,670 /usr/include/c++/10 2021-07-15T22:04:38,670 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:38,671 /usr/include/c++/10/backward 2021-07-15T22:04:38,671 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:38,671 /usr/local/include 2021-07-15T22:04:38,671 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:38,671 /usr/include 2021-07-15T22:04:38,671 End of search list. 2021-07-15T22:04:38,672 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:38,672 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:38,672 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:38,685 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:40,057 In file included from include/openbabel/atom.h:33, 2021-07-15T22:04:40,057 from include/openbabel/mol.h:43, 2021-07-15T22:04:40,058 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T22:04:40,058 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:40,058 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:40,058 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:40,058 | ^ 2021-07-15T22:04:40,058 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:40,059 37 | # define UNUSED(x) x 2021-07-15T22:04:40,059 | ^ 2021-07-15T22:04:40,753 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:40,753 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T22:04:40,753 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:40,753 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:40,753 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:40,754 | ^ 2021-07-15T22:04:40,754 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:40,754 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:40,754 | ^~~~~~~~ 2021-07-15T22:04:40,756 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:40,757 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:40,757 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:40,757 | ^ 2021-07-15T22:04:40,757 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:40,757 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:40,757 | ^~~~~~~~ 2021-07-15T22:04:40,773 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:40,773 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:40,773 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:40,774 | ^ 2021-07-15T22:04:40,774 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:40,774 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:40,774 | ^~~~~~~~ 2021-07-15T22:04:40,778 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:40,778 from ./src/fingerprints/fingerecfp.cpp:15: 2021-07-15T22:04:40,778 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:40,778 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:40,778 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:40,778 | ^ 2021-07-15T22:04:40,779 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:40,779 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:40,779 | ^~~~~~~~ 2021-07-15T22:04:40,986 ./src/fingerprints/fingerecfp.cpp: In member function ‘virtual std::string OpenBabel::fingerprintECFP::DescribeBits(std::vector, bool)’: 2021-07-15T22:04:40,987 ./src/fingerprints/fingerecfp.cpp:43:70: warning: unused parameter ‘fp’ [-Wunused-parameter] 2021-07-15T22:04:40,987 43 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T22:04:40,987 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2021-07-15T22:04:40,987 ./src/fingerprints/fingerecfp.cpp:43:79: warning: unused parameter ‘bSet’ [-Wunused-parameter] 2021-07-15T22:04:40,987 43 | virtual std::string DescribeBits(const std:: vector fp, bool bSet=true) 2021-07-15T22:04:40,987 | ~~~~~^~~~~~~~~ 2021-07-15T22:04:42,134 ./src/fingerprints/fingerecfp.cpp: In function ‘unsigned int OpenBabel::ECFPHash(unsigned char*, unsigned int)’: 2021-07-15T22:04:42,134 ./src/fingerprints/fingerecfp.cpp:105:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,134 105 | case 11: c += ((unsigned int)ptr[10]<<24); 2021-07-15T22:04:42,134 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,135 ./src/fingerprints/fingerecfp.cpp:106:3: note: here 2021-07-15T22:04:42,135 106 | case 10: c += ((unsigned int)ptr[9]<<16); 2021-07-15T22:04:42,135 | ^~~~ 2021-07-15T22:04:42,135 ./src/fingerprints/fingerecfp.cpp:106:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,135 106 | case 10: c += ((unsigned int)ptr[9]<<16); 2021-07-15T22:04:42,135 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,135 ./src/fingerprints/fingerecfp.cpp:107:3: note: here 2021-07-15T22:04:42,135 107 | case 9: c += ((unsigned int)ptr[8]<<8); 2021-07-15T22:04:42,136 | ^~~~ 2021-07-15T22:04:42,136 ./src/fingerprints/fingerecfp.cpp:107:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,136 107 | case 9: c += ((unsigned int)ptr[8]<<8); 2021-07-15T22:04:42,136 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,136 ./src/fingerprints/fingerecfp.cpp:108:3: note: here 2021-07-15T22:04:42,136 108 | case 8: b += ((unsigned int)ptr[7]<<24); 2021-07-15T22:04:42,136 | ^~~~ 2021-07-15T22:04:42,136 ./src/fingerprints/fingerecfp.cpp:108:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,137 108 | case 8: b += ((unsigned int)ptr[7]<<24); 2021-07-15T22:04:42,137 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,137 ./src/fingerprints/fingerecfp.cpp:109:3: note: here 2021-07-15T22:04:42,137 109 | case 7: b += ((unsigned int)ptr[6]<<16); 2021-07-15T22:04:42,137 | ^~~~ 2021-07-15T22:04:42,137 ./src/fingerprints/fingerecfp.cpp:109:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,137 109 | case 7: b += ((unsigned int)ptr[6]<<16); 2021-07-15T22:04:42,137 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,137 ./src/fingerprints/fingerecfp.cpp:110:3: note: here 2021-07-15T22:04:42,138 110 | case 6: b += ((unsigned int)ptr[5]<<8); 2021-07-15T22:04:42,138 | ^~~~ 2021-07-15T22:04:42,138 ./src/fingerprints/fingerecfp.cpp:110:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,138 110 | case 6: b += ((unsigned int)ptr[5]<<8); 2021-07-15T22:04:42,138 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,138 ./src/fingerprints/fingerecfp.cpp:111:3: note: here 2021-07-15T22:04:42,138 111 | case 5: b += ptr[4]; 2021-07-15T22:04:42,138 | ^~~~ 2021-07-15T22:04:42,139 ./src/fingerprints/fingerecfp.cpp:111:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,139 111 | case 5: b += ptr[4]; 2021-07-15T22:04:42,139 | ~~^~~~~~~~~ 2021-07-15T22:04:42,139 ./src/fingerprints/fingerecfp.cpp:112:3: note: here 2021-07-15T22:04:42,139 112 | case 4: a += ((unsigned int)ptr[3]<<24); 2021-07-15T22:04:42,139 | ^~~~ 2021-07-15T22:04:42,139 ./src/fingerprints/fingerecfp.cpp:112:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,139 112 | case 4: a += ((unsigned int)ptr[3]<<24); 2021-07-15T22:04:42,139 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,140 ./src/fingerprints/fingerecfp.cpp:113:3: note: here 2021-07-15T22:04:42,140 113 | case 3: a += ((unsigned int)ptr[2]<<16); 2021-07-15T22:04:42,140 | ^~~~ 2021-07-15T22:04:42,140 ./src/fingerprints/fingerecfp.cpp:113:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,140 113 | case 3: a += ((unsigned int)ptr[2]<<16); 2021-07-15T22:04:42,140 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,140 ./src/fingerprints/fingerecfp.cpp:114:3: note: here 2021-07-15T22:04:42,140 114 | case 2: a += ((unsigned int)ptr[1]<<8); 2021-07-15T22:04:42,141 | ^~~~ 2021-07-15T22:04:42,141 ./src/fingerprints/fingerecfp.cpp:114:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,141 114 | case 2: a += ((unsigned int)ptr[1]<<8); 2021-07-15T22:04:42,141 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:42,141 ./src/fingerprints/fingerecfp.cpp:115:3: note: here 2021-07-15T22:04:42,141 115 | case 1: a += ptr[0]; 2021-07-15T22:04:42,141 | ^~~~ 2021-07-15T22:04:42,149 ./src/fingerprints/fingerecfp.cpp: In function ‘unsigned int OpenBabel::ECFPHash(std::vector&)’: 2021-07-15T22:04:42,149 ./src/fingerprints/fingerecfp.cpp:139:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:04:42,150 139 | case 2: b += v[i+1]; 2021-07-15T22:04:42,150 ./src/fingerprints/fingerecfp.cpp:140:3: note: here 2021-07-15T22:04:42,150 140 | case 1: a += v[i]; 2021-07-15T22:04:42,150 | ^~~~ 2021-07-15T22:04:44,517 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:44,517 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o /tmp/ccBQrN9n.s 2021-07-15T22:04:44,523 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:04:44,791 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:04:44,791 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:04:44,791 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/fingerprints/fingerecfp.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:44,793 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefield.cpp -o build/temp.linux-armv7l-3.9/./src/forcefield.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:04:44,802 Using built-in specs. 2021-07-15T22:04:44,803 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:04:44,803 Target: arm-linux-gnueabihf 2021-07-15T22:04:44,803 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:04:44,803 Thread model: posix 2021-07-15T22:04:44,803 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:04:44,804 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:04:44,804 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:04:44,804 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefield.cpp -quiet -dumpbase forcefield.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefield.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc76Ot3D.s 2021-07-15T22:04:44,815 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:44,815 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:44,816 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:44,817 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:04:44,817 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:04:44,817 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:04:44,817 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:04:44,818 ignoring duplicate directory "/usr/include/" 2021-07-15T22:04:44,818 as it is a non-system directory that duplicates a system directory 2021-07-15T22:04:44,818 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:04:44,818 #include "..." search starts here: 2021-07-15T22:04:44,818 #include <...> search starts here: 2021-07-15T22:04:44,818 /usr/include/eigen3 2021-07-15T22:04:44,819 include 2021-07-15T22:04:44,819 /usr/include/python3.9 2021-07-15T22:04:44,819 /usr/include/c++/10 2021-07-15T22:04:44,819 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:04:44,819 /usr/include/c++/10/backward 2021-07-15T22:04:44,820 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:04:44,820 /usr/local/include 2021-07-15T22:04:44,820 /usr/include/arm-linux-gnueabihf 2021-07-15T22:04:44,820 /usr/include 2021-07-15T22:04:44,820 End of search list. 2021-07-15T22:04:44,820 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:04:44,821 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:04:44,821 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:04:44,838 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:04:46,193 In file included from include/openbabel/forcefield.h:30, 2021-07-15T22:04:46,193 from ./src/forcefield.cpp:22: 2021-07-15T22:04:46,194 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:04:46,194 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:04:46,194 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:04:46,194 | ^ 2021-07-15T22:04:46,194 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:46,194 37 | # define UNUSED(x) x 2021-07-15T22:04:46,194 | ^ 2021-07-15T22:04:46,906 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:46,907 from include/openbabel/forcefield.h:31, 2021-07-15T22:04:46,907 from ./src/forcefield.cpp:22: 2021-07-15T22:04:46,907 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:46,907 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:46,907 862 | {return new OBVibrationData(*this);} 2021-07-15T22:04:46,907 | ^ 2021-07-15T22:04:46,907 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:04:46,908 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:04:46,908 | ^~~~~~~~ 2021-07-15T22:04:46,910 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:46,910 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:46,910 907 | {return new OBDOSData(*this);} 2021-07-15T22:04:46,911 | ^ 2021-07-15T22:04:46,911 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:04:46,911 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:04:46,911 | ^~~~~~~~ 2021-07-15T22:04:46,927 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:46,927 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:46,927 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:04:46,927 | ^ 2021-07-15T22:04:46,927 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:04:46,928 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:04:46,928 | ^~~~~~~~ 2021-07-15T22:04:46,931 In file included from include/openbabel/mol.h:52, 2021-07-15T22:04:46,932 from include/openbabel/forcefield.h:31, 2021-07-15T22:04:46,932 from ./src/forcefield.cpp:22: 2021-07-15T22:04:46,932 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:04:46,932 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:04:46,932 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:04:46,932 | ^ 2021-07-15T22:04:46,933 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:04:46,933 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:04:46,933 | ^~~~~~~~ 2021-07-15T22:04:47,188 In file included from include/openbabel/forcefield.h:30, 2021-07-15T22:04:47,188 from ./src/forcefield.cpp:22: 2021-07-15T22:04:47,188 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:04:47,188 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,188 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,188 | ^ 2021-07-15T22:04:47,189 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,189 37 | # define UNUSED(x) x 2021-07-15T22:04:47,189 | ^ 2021-07-15T22:04:47,189 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:04:47,189 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,189 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,190 | ^ 2021-07-15T22:04:47,190 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,190 37 | # define UNUSED(x) x 2021-07-15T22:04:47,190 | ^ 2021-07-15T22:04:47,190 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:04:47,190 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,190 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,191 | ^ 2021-07-15T22:04:47,191 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,191 37 | # define UNUSED(x) x 2021-07-15T22:04:47,191 | ^ 2021-07-15T22:04:47,191 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:04:47,191 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,191 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,192 | ^ 2021-07-15T22:04:47,192 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,192 37 | # define UNUSED(x) x 2021-07-15T22:04:47,192 | ^ 2021-07-15T22:04:47,192 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:04:47,192 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,192 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,192 | ^ 2021-07-15T22:04:47,193 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,193 37 | # define UNUSED(x) x 2021-07-15T22:04:47,193 | ^ 2021-07-15T22:04:47,193 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:04:47,193 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,193 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,193 | ^ 2021-07-15T22:04:47,194 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,194 37 | # define UNUSED(x) x 2021-07-15T22:04:47,194 | ^ 2021-07-15T22:04:47,194 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:04:47,194 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,194 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,194 | ^ 2021-07-15T22:04:47,194 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,195 37 | # define UNUSED(x) x 2021-07-15T22:04:47,195 | ^ 2021-07-15T22:04:47,195 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:04:47,195 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:04:47,195 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:04:47,195 | ^ 2021-07-15T22:04:47,195 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,196 37 | # define UNUSED(x) x 2021-07-15T22:04:47,196 | ^ 2021-07-15T22:04:47,227 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetDelta(double)’: 2021-07-15T22:04:47,227 include/openbabel/rotor.h:417:33: warning: unused parameter ‘d’ [-Wunused-parameter] 2021-07-15T22:04:47,228 417 | void SetDelta(double UNUSED(d)) {} 2021-07-15T22:04:47,228 | ^ 2021-07-15T22:04:47,228 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,228 37 | # define UNUSED(x) x 2021-07-15T22:04:47,228 | ^ 2021-07-15T22:04:47,228 include/openbabel/rotor.h: In member function ‘void OpenBabel::OBRotor::SetNumCoords(int)’: 2021-07-15T22:04:47,228 include/openbabel/rotor.h:433:34: warning: unused parameter ‘nc’ [-Wunused-parameter] 2021-07-15T22:04:47,229 433 | void SetNumCoords(int UNUSED(nc)) {} 2021-07-15T22:04:47,229 | ^ 2021-07-15T22:04:47,229 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:04:47,229 37 | # define UNUSED(x) x 2021-07-15T22:04:47,229 | ^ 2021-07-15T22:04:47,332 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: 2021-07-15T22:04:47,332 ./src/forcefield.cpp:384:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:47,332 384 | if (_ignoreAtom == a) 2021-07-15T22:04:47,332 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:04:47,332 ./src/forcefield.cpp:386:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:47,333 386 | if (_ignoreAtom == b) 2021-07-15T22:04:47,333 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:04:47,333 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: 2021-07-15T22:04:47,333 ./src/forcefield.cpp:396:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:47,333 396 | if (_ignoreAtom == b) 2021-07-15T22:04:47,333 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:04:47,334 ./src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: 2021-07-15T22:04:47,334 ./src/forcefield.cpp:406:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:04:47,334 406 | if (_ignoreAtom == d) 2021-07-15T22:04:47,334 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:04:47,353 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: 2021-07-15T22:04:47,353 ./src/forcefield.cpp:658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,353 658 | if (index >= _constraints.size()) 2021-07-15T22:04:47,353 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,354 ./src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: 2021-07-15T22:04:47,354 ./src/forcefield.cpp:666:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,354 666 | if (index >= _constraints.size()) 2021-07-15T22:04:47,354 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,354 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: 2021-07-15T22:04:47,354 ./src/forcefield.cpp:674:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,355 674 | if (index >= _constraints.size()) 2021-07-15T22:04:47,355 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,355 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: 2021-07-15T22:04:47,355 ./src/forcefield.cpp:682:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,355 682 | if (index >= _constraints.size()) 2021-07-15T22:04:47,355 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,356 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: 2021-07-15T22:04:47,356 ./src/forcefield.cpp:690:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,356 690 | if (index >= _constraints.size()) 2021-07-15T22:04:47,356 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,356 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: 2021-07-15T22:04:47,356 ./src/forcefield.cpp:698:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,356 698 | if (index >= _constraints.size()) 2021-07-15T22:04:47,357 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,404 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: 2021-07-15T22:04:47,404 ./src/forcefield.cpp:1358:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2021-07-15T22:04:47,404 1358 | num_permutations = factorial[num_rotors_to_permute]; 2021-07-15T22:04:47,405 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:47,405 ./src/forcefield.cpp:1362:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,405 1362 | for (int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:04:47,427 1375 | for (int i=0; i >&, std::vector, double)’: 2021-07-15T22:04:47,445 ./src/forcefield.cpp:1576:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:47,446 1576 | if (j == rotorKey[i]) 2021-07-15T22:04:47,446 ./src/forcefield.cpp:1595:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 2021-07-15T22:04:47,446 1595 | if (j == rotorKey[i]) 2021-07-15T22:04:47,468 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::DistanceGeometry()’: 2021-07-15T22:04:47,468 ./src/forcefield.cpp:1975:26: warning: variable ‘l_bc’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:04:47,468 1975 | double l_ab, l_bc, l_ac; // lower limits 2021-07-15T22:04:47,468 | ^~~~ 2021-07-15T22:04:47,509 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::SteepestDescentInitialize(int, double, int)’: 2021-07-15T22:04:47,509 ./src/forcefield.cpp:2747:77: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T22:04:47,509 2747 | void OBForceField::SteepestDescentInitialize(int steps, double econv, int method) 2021-07-15T22:04:47,510 | ~~~~^~~~~~ 2021-07-15T22:04:47,517 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::ConjugateGradientsInitialize(int, double, int)’: 2021-07-15T22:04:47,517 ./src/forcefield.cpp:2873:55: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T22:04:47,517 2873 | int method) 2021-07-15T22:04:47,517 | ~~~~^~~~~~ 2021-07-15T22:04:47,547 ./src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::MolecularDynamicsTakeNSteps(int, double, double, int)’: 2021-07-15T22:04:47,547 ./src/forcefield.cpp:3524:88: warning: unused parameter ‘method’ [-Wunused-parameter] 2021-07-15T22:04:47,548 3524 | void OBForceField::MolecularDynamicsTakeNSteps(int n, double T, double timestep, int method) 2021-07-15T22:04:47,548 | ~~~~^~~~~~ 2021-07-15T22:04:59,702 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:04:59,702 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,702 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,702 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFConstraint&}; _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator]’: 2021-07-15T22:04:59,702 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:04:59,703 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:04:59,703 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:04:59,813 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,813 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: 2021-07-15T22:04:59,813 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,813 235 | class OBFPRT OBFFConstraint 2021-07-15T22:04:59,813 | ^~~~~~~~~~~~~~ 2021-07-15T22:04:59,813 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,815 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:59,815 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,815 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,815 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:59,815 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:59,815 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:59,860 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,860 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddIgnore(int)’: 2021-07-15T22:04:59,860 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,860 235 | class OBFPRT OBFFConstraint 2021-07-15T22:04:59,860 | ^~~~~~~~~~~~~~ 2021-07-15T22:04:59,860 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,861 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:59,861 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,861 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,862 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:59,862 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:59,862 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:59,904 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,905 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: 2021-07-15T22:04:59,905 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,905 235 | class OBFPRT OBFFConstraint 2021-07-15T22:04:59,905 | ^~~~~~~~~~~~~~ 2021-07-15T22:04:59,905 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,906 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:59,906 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,906 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,906 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:59,906 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:59,906 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:59,949 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,949 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: 2021-07-15T22:04:59,950 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,950 235 | class OBFPRT OBFFConstraint 2021-07-15T22:04:59,950 | ^~~~~~~~~~~~~~ 2021-07-15T22:04:59,950 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,951 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:59,951 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,951 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,951 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:59,951 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:59,951 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:04:59,994 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,995 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: 2021-07-15T22:04:59,995 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,995 235 | class OBFPRT OBFFConstraint 2021-07-15T22:04:59,995 | ^~~~~~~~~~~~~~ 2021-07-15T22:04:59,995 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:04:59,996 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:04:59,996 from include/openbabel/forcefield.h:23, 2021-07-15T22:04:59,996 from ./src/forcefield.cpp:22: 2021-07-15T22:04:59,996 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:04:59,996 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:04:59,996 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:00,039 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,039 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: 2021-07-15T22:05:00,040 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,040 235 | class OBFPRT OBFFConstraint 2021-07-15T22:05:00,040 | ^~~~~~~~~~~~~~ 2021-07-15T22:05:00,040 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,041 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:00,041 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:00,041 from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,041 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:00,041 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:00,041 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:00,084 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,084 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: 2021-07-15T22:05:00,084 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,085 235 | class OBFPRT OBFFConstraint 2021-07-15T22:05:00,085 | ^~~~~~~~~~~~~~ 2021-07-15T22:05:00,085 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,085 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:00,086 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:00,086 from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,086 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:00,086 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:00,086 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:00,130 In file included from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,130 include/openbabel/forcefield.h: In member function ‘void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: 2021-07-15T22:05:00,130 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rab0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,130 235 | class OBFPRT OBFFConstraint 2021-07-15T22:05:00,130 | ^~~~~~~~~~~~~~ 2021-07-15T22:05:00,130 include/openbabel/forcefield.h:235:16: warning: ‘constraint.OpenBabel::OBFFConstraint::rbc0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,131 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:00,131 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:00,131 from ./src/forcefield.cpp:22: 2021-07-15T22:05:00,131 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:00,132 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:00,132 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:00,845 ./src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: 2021-07-15T22:05:00,845 ./src/forcefield.cpp:1415:11: warning: ‘minE’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,846 1415 | if (minE < best_minE) { 2021-07-15T22:05:00,846 | ^~ 2021-07-15T22:05:00,846 ./src/forcefield.cpp:1398:29: warning: ‘minj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:05:00,846 1398 | rotorKey[idx + 1] = minj; 2021-07-15T22:05:00,846 | ^~~~ 2021-07-15T22:05:01,688 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:01,688 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:01,688 from ./src/forcefield.cpp:22: 2021-07-15T22:05:01,688 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:05:01,688 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:01,688 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:01,689 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:02,067 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:02,067 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:02,067 from ./src/forcefield.cpp:22: 2021-07-15T22:05:02,067 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: 2021-07-15T22:05:02,067 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:02,068 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:02,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:02,068 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:02,068 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:02,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:02,070 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:02,070 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:02,070 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:03,095 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:03,096 from include/openbabel/forcefield.h:23, 2021-07-15T22:05:03,096 from ./src/forcefield.cpp:22: 2021-07-15T22:05:03,096 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:05:03,096 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:03,096 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:03,096 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:03,494 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)’: 2021-07-15T22:05:03,495 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:03,495 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:03,495 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:04,934 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:04,934 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefield.o /tmp/cc76Ot3D.s 2021-07-15T22:05:04,939 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:06,590 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:06,591 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:06,591 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefield.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:06,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldgaff.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:06,607 Using built-in specs. 2021-07-15T22:05:06,609 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:06,609 Target: arm-linux-gnueabihf 2021-07-15T22:05:06,609 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:06,610 Thread model: posix 2021-07-15T22:05:06,610 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:06,610 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:06,611 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:06,614 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldgaff.cpp -quiet -dumpbase forcefieldgaff.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchCAdw3.s 2021-07-15T22:05:06,627 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:06,627 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:06,628 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:06,628 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:06,628 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:06,628 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:06,629 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:06,629 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:06,629 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:06,629 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:06,629 #include "..." search starts here: 2021-07-15T22:05:06,629 #include <...> search starts here: 2021-07-15T22:05:06,629 /usr/include/eigen3 2021-07-15T22:05:06,630 include 2021-07-15T22:05:06,630 /usr/include/python3.9 2021-07-15T22:05:06,630 /usr/include/c++/10 2021-07-15T22:05:06,630 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:06,630 /usr/include/c++/10/backward 2021-07-15T22:05:06,630 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:06,631 /usr/local/include 2021-07-15T22:05:06,631 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:06,631 /usr/include 2021-07-15T22:05:06,631 End of search list. 2021-07-15T22:05:06,633 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:06,633 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:06,633 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:06,647 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:08,020 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:08,020 from include/openbabel/mol.h:43, 2021-07-15T22:05:08,021 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:08,021 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:08,021 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:08,021 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:08,021 | ^ 2021-07-15T22:05:08,022 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:08,022 37 | # define UNUSED(x) x 2021-07-15T22:05:08,022 | ^ 2021-07-15T22:05:08,712 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:08,713 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:08,713 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:08,713 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:08,713 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:08,713 | ^ 2021-07-15T22:05:08,714 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:08,714 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:08,714 | ^~~~~~~~ 2021-07-15T22:05:08,716 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:08,716 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:08,717 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:08,717 | ^ 2021-07-15T22:05:08,717 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:08,717 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:08,717 | ^~~~~~~~ 2021-07-15T22:05:08,733 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:08,733 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:08,733 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:08,733 | ^ 2021-07-15T22:05:08,733 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:08,734 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:08,734 | ^~~~~~~~ 2021-07-15T22:05:08,738 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:08,738 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:08,738 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:08,738 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:08,738 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:08,738 | ^ 2021-07-15T22:05:08,738 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:08,739 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:08,739 | ^~~~~~~~ 2021-07-15T22:05:09,124 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:09,124 from include/openbabel/mol.h:43, 2021-07-15T22:05:09,125 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:09,125 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:05:09,125 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,125 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,125 | ^ 2021-07-15T22:05:09,125 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,125 37 | # define UNUSED(x) x 2021-07-15T22:05:09,126 | ^ 2021-07-15T22:05:09,126 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:05:09,126 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,126 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,126 | ^ 2021-07-15T22:05:09,126 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,127 37 | # define UNUSED(x) x 2021-07-15T22:05:09,127 | ^ 2021-07-15T22:05:09,127 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:05:09,127 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,127 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,127 | ^ 2021-07-15T22:05:09,127 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,128 37 | # define UNUSED(x) x 2021-07-15T22:05:09,128 | ^ 2021-07-15T22:05:09,128 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:05:09,128 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,128 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,128 | ^ 2021-07-15T22:05:09,128 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,128 37 | # define UNUSED(x) x 2021-07-15T22:05:09,129 | ^ 2021-07-15T22:05:09,129 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:05:09,129 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,129 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,129 | ^ 2021-07-15T22:05:09,129 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,129 37 | # define UNUSED(x) x 2021-07-15T22:05:09,130 | ^ 2021-07-15T22:05:09,130 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:05:09,130 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,130 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,130 | ^ 2021-07-15T22:05:09,130 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,130 37 | # define UNUSED(x) x 2021-07-15T22:05:09,130 | ^ 2021-07-15T22:05:09,131 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:05:09,131 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,131 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,131 | ^ 2021-07-15T22:05:09,131 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,131 37 | # define UNUSED(x) x 2021-07-15T22:05:09,131 | ^ 2021-07-15T22:05:09,132 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:05:09,132 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:09,132 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:09,132 | ^ 2021-07-15T22:05:09,132 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:09,132 37 | # define UNUSED(x) x 2021-07-15T22:05:09,132 | ^ 2021-07-15T22:05:15,792 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:15,792 from include/openbabel/mol.h:35, 2021-07-15T22:05:15,792 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:15,792 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGaff&}; _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:15,792 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:15,793 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:15,793 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:15,923 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGaff&}; _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:15,924 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:16,056 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:16,056 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,056 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,056 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,056 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:16,057 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:16,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:16,135 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:16,135 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,135 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,136 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGaff&}; _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,136 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:16,136 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:16,136 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:16,310 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:16,310 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,310 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,310 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,310 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:16,310 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:16,310 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:16,401 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:16,402 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,402 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,402 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationGaff&}; _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,402 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:16,402 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:16,402 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:16,574 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:16,575 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,575 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,575 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,575 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:16,575 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:16,575 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:16,656 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:16,656 from include/openbabel/mol.h:35, 2021-07-15T22:05:16,656 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:16,656 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGaff&}; _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,656 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:16,657 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:16,657 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:16,779 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGaff&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator]’: 2021-07-15T22:05:16,779 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:17,356 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:17,356 from include/openbabel/mol.h:35, 2021-07-15T22:05:17,356 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:17,356 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()’: 2021-07-15T22:05:17,357 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,357 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,357 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:17,357 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,357 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,357 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:17,360 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,361 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,361 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:17,364 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,365 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,365 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:17,371 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,371 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,371 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:17,373 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:17,374 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:17,374 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:18,888 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:18,888 from include/openbabel/mol.h:35, 2021-07-15T22:05:18,889 from ./src/forcefields/forcefieldgaff.cpp:21: 2021-07-15T22:05:18,889 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:05:18,889 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:18,889 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:18,889 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,847 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()’: 2021-07-15T22:05:21,847 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,847 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,848 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,848 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,848 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,848 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,849 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,849 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,849 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,849 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,850 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,850 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,851 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,851 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,851 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,851 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,851 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,851 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,853 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,853 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,853 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,853 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,853 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,853 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,854 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,854 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,854 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,855 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,855 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,855 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,855 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,855 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,855 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,856 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,856 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,856 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,857 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,857 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,857 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,857 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,857 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,857 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,859 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,859 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,859 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:21,859 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:21,859 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:21,859 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:25,640 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:25,641 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o /tmp/cchCAdw3.s 2021-07-15T22:05:25,647 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:27,004 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:27,004 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:27,004 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldgaff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:27,009 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldghemical.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:27,020 Using built-in specs. 2021-07-15T22:05:27,022 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:27,022 Target: arm-linux-gnueabihf 2021-07-15T22:05:27,022 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:27,022 Thread model: posix 2021-07-15T22:05:27,022 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:27,023 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:27,023 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:27,023 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldghemical.cpp -quiet -dumpbase forcefieldghemical.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccH3w6Hp.s 2021-07-15T22:05:27,036 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:27,037 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:27,037 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:27,038 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:27,038 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:27,039 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:27,039 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:27,039 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:27,039 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:27,040 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:27,040 #include "..." search starts here: 2021-07-15T22:05:27,040 #include <...> search starts here: 2021-07-15T22:05:27,040 /usr/include/eigen3 2021-07-15T22:05:27,040 include 2021-07-15T22:05:27,041 /usr/include/python3.9 2021-07-15T22:05:27,041 /usr/include/c++/10 2021-07-15T22:05:27,041 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:27,041 /usr/include/c++/10/backward 2021-07-15T22:05:27,041 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:27,042 /usr/local/include 2021-07-15T22:05:27,042 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:27,042 /usr/include 2021-07-15T22:05:27,042 End of search list. 2021-07-15T22:05:27,042 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:27,042 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:27,043 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:27,058 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:28,437 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:28,437 from include/openbabel/mol.h:43, 2021-07-15T22:05:28,437 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:28,437 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:28,437 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:28,438 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:28,438 | ^ 2021-07-15T22:05:28,438 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:28,438 37 | # define UNUSED(x) x 2021-07-15T22:05:28,438 | ^ 2021-07-15T22:05:29,130 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:29,130 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:29,131 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,131 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,131 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:29,131 | ^ 2021-07-15T22:05:29,131 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:29,131 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:29,132 | ^~~~~~~~ 2021-07-15T22:05:29,134 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,134 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,134 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:29,134 | ^ 2021-07-15T22:05:29,135 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:29,135 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:29,135 | ^~~~~~~~ 2021-07-15T22:05:29,150 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,151 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,151 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:29,151 | ^ 2021-07-15T22:05:29,151 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:29,151 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:29,152 | ^~~~~~~~ 2021-07-15T22:05:29,155 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:29,156 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:29,156 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:29,156 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:29,156 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:29,156 | ^ 2021-07-15T22:05:29,156 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:29,156 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:29,157 | ^~~~~~~~ 2021-07-15T22:05:29,542 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:29,543 from include/openbabel/mol.h:43, 2021-07-15T22:05:29,543 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:29,543 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:05:29,543 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,543 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,543 | ^ 2021-07-15T22:05:29,543 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,544 37 | # define UNUSED(x) x 2021-07-15T22:05:29,544 | ^ 2021-07-15T22:05:29,544 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:05:29,544 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,544 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,544 | ^ 2021-07-15T22:05:29,545 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,545 37 | # define UNUSED(x) x 2021-07-15T22:05:29,545 | ^ 2021-07-15T22:05:29,545 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:05:29,545 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,545 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,545 | ^ 2021-07-15T22:05:29,546 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,546 37 | # define UNUSED(x) x 2021-07-15T22:05:29,546 | ^ 2021-07-15T22:05:29,546 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:05:29,546 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,546 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,546 | ^ 2021-07-15T22:05:29,546 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,547 37 | # define UNUSED(x) x 2021-07-15T22:05:29,547 | ^ 2021-07-15T22:05:29,547 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:05:29,547 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,547 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,547 | ^ 2021-07-15T22:05:29,547 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,548 37 | # define UNUSED(x) x 2021-07-15T22:05:29,548 | ^ 2021-07-15T22:05:29,548 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:05:29,548 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,548 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,548 | ^ 2021-07-15T22:05:29,548 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,549 37 | # define UNUSED(x) x 2021-07-15T22:05:29,549 | ^ 2021-07-15T22:05:29,549 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:05:29,549 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,549 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,549 | ^ 2021-07-15T22:05:29,549 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,549 37 | # define UNUSED(x) x 2021-07-15T22:05:29,550 | ^ 2021-07-15T22:05:29,550 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:05:29,550 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:29,550 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:29,550 | ^ 2021-07-15T22:05:29,550 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:29,550 37 | # define UNUSED(x) x 2021-07-15T22:05:29,551 | ^ 2021-07-15T22:05:35,836 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:35,837 from include/openbabel/mol.h:35, 2021-07-15T22:05:35,837 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:35,837 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGhemical&}; _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:35,837 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:35,837 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:35,837 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:35,969 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGhemical&}; _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:35,969 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:36,100 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:36,101 from include/openbabel/mol.h:35, 2021-07-15T22:05:36,101 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:36,101 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:36,101 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:36,101 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:36,101 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:36,186 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:36,186 from include/openbabel/mol.h:35, 2021-07-15T22:05:36,186 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:36,186 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGhemical&}; _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:36,186 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:36,186 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:36,187 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:36,385 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:36,385 from include/openbabel/mol.h:35, 2021-07-15T22:05:36,385 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:36,385 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:36,385 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:36,385 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:36,385 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:36,476 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:36,476 from include/openbabel/mol.h:35, 2021-07-15T22:05:36,476 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:36,476 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGhemical&}; _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:36,477 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:36,477 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:36,477 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:36,611 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGhemical&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator]’: 2021-07-15T22:05:36,611 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:37,139 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:05:37,140 from include/openbabel/mol.h:35, 2021-07-15T22:05:37,140 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:37,140 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()’: 2021-07-15T22:05:37,140 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,140 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,140 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:37,140 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,141 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,141 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:37,144 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,144 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,144 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:37,148 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,148 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,148 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:37,152 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,152 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,152 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:37,155 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:37,155 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:05:37,155 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:05:38,617 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:38,617 from include/openbabel/mol.h:35, 2021-07-15T22:05:38,617 from ./src/forcefields/forcefieldghemical.cpp:20: 2021-07-15T22:05:38,617 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:05:38,618 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:38,618 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:38,618 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,067 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()’: 2021-07-15T22:05:41,067 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,067 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,067 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,067 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,067 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,068 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,068 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,069 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,069 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,069 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,070 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,071 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,071 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,071 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,071 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,071 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:41,072 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:41,072 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:41,072 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:43,535 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:43,535 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o /tmp/ccH3w6Hp.s 2021-07-15T22:05:43,540 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:44,769 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:44,769 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:44,770 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldghemical.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:44,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldmm2.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:44,785 Using built-in specs. 2021-07-15T22:05:44,786 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:44,786 Target: arm-linux-gnueabihf 2021-07-15T22:05:44,787 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:44,787 Thread model: posix 2021-07-15T22:05:44,787 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:44,787 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:44,789 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:44,792 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldmm2.cpp -quiet -dumpbase forcefieldmm2.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZ9EsEH.s 2021-07-15T22:05:44,803 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:44,804 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:44,804 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:44,804 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:44,805 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:44,805 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:44,805 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:44,805 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:44,805 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:44,806 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:44,806 #include "..." search starts here: 2021-07-15T22:05:44,806 #include <...> search starts here: 2021-07-15T22:05:44,807 /usr/include/eigen3 2021-07-15T22:05:44,807 include 2021-07-15T22:05:44,807 /usr/include/python3.9 2021-07-15T22:05:44,807 /usr/include/c++/10 2021-07-15T22:05:44,807 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:44,807 /usr/include/c++/10/backward 2021-07-15T22:05:44,807 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:44,807 /usr/local/include 2021-07-15T22:05:44,808 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:44,808 /usr/include 2021-07-15T22:05:44,808 End of search list. 2021-07-15T22:05:44,808 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:44,808 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:44,808 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:44,821 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:45,179 In file included from ./src/forcefields/forcefieldmm2.cpp:21: 2021-07-15T22:05:45,179 include/forcefields/forcefieldmm2.h:68:57: warning: multi-line comment [-Wcomment] 2021-07-15T22:05:45,180 68 | // b = atom d \ 2021-07-15T22:05:45,180 | ^ 2021-07-15T22:05:45,181 ./src/forcefields/forcefieldmm2.cpp:276:3: warning: multi-line comment [-Wcomment] 2021-07-15T22:05:45,181 276 | // \ 2021-07-15T22:05:45,181 | ^ 2021-07-15T22:05:46,193 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:46,193 from include/openbabel/mol.h:43, 2021-07-15T22:05:46,193 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T22:05:46,193 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:46,193 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:46,194 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:46,194 | ^ 2021-07-15T22:05:46,194 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:46,194 37 | # define UNUSED(x) x 2021-07-15T22:05:46,194 | ^ 2021-07-15T22:05:46,888 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:46,889 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T22:05:46,889 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:46,889 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:46,889 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:46,889 | ^ 2021-07-15T22:05:46,889 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:46,890 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:46,890 | ^~~~~~~~ 2021-07-15T22:05:46,892 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:46,892 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:46,893 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:46,893 | ^ 2021-07-15T22:05:46,893 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:46,893 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:46,893 | ^~~~~~~~ 2021-07-15T22:05:46,909 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:46,909 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:46,909 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:46,909 | ^ 2021-07-15T22:05:46,910 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:46,910 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:46,910 | ^~~~~~~~ 2021-07-15T22:05:46,914 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:46,914 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T22:05:46,914 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:46,914 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:46,914 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:46,914 | ^ 2021-07-15T22:05:46,915 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:46,915 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:46,915 | ^~~~~~~~ 2021-07-15T22:05:47,303 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:47,303 from include/openbabel/mol.h:43, 2021-07-15T22:05:47,304 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T22:05:47,304 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:05:47,304 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,304 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,304 | ^ 2021-07-15T22:05:47,304 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,304 37 | # define UNUSED(x) x 2021-07-15T22:05:47,305 | ^ 2021-07-15T22:05:47,305 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:05:47,305 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,305 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,305 | ^ 2021-07-15T22:05:47,305 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,306 37 | # define UNUSED(x) x 2021-07-15T22:05:47,306 | ^ 2021-07-15T22:05:47,306 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:05:47,306 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,306 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,306 | ^ 2021-07-15T22:05:47,306 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,307 37 | # define UNUSED(x) x 2021-07-15T22:05:47,307 | ^ 2021-07-15T22:05:47,307 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:05:47,307 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,307 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,307 | ^ 2021-07-15T22:05:47,307 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,307 37 | # define UNUSED(x) x 2021-07-15T22:05:47,308 | ^ 2021-07-15T22:05:47,308 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:05:47,308 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,308 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,308 | ^ 2021-07-15T22:05:47,308 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,308 37 | # define UNUSED(x) x 2021-07-15T22:05:47,309 | ^ 2021-07-15T22:05:47,309 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:05:47,309 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,309 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,309 | ^ 2021-07-15T22:05:47,309 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,309 37 | # define UNUSED(x) x 2021-07-15T22:05:47,310 | ^ 2021-07-15T22:05:47,310 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:05:47,310 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,310 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,310 | ^ 2021-07-15T22:05:47,310 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,310 37 | # define UNUSED(x) x 2021-07-15T22:05:47,310 | ^ 2021-07-15T22:05:47,311 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:05:47,311 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:47,311 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:47,311 | ^ 2021-07-15T22:05:47,311 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:47,311 37 | # define UNUSED(x) x 2021-07-15T22:05:47,311 | ^ 2021-07-15T22:05:47,341 In file included from ./src/forcefields/forcefieldmm2.cpp:21: 2021-07-15T22:05:47,342 include/forcefields/forcefieldmm2.h: In member function ‘virtual OpenBabel::OBForceFieldMM2* OpenBabel::OBForceFieldMM2::MakeNewInstance()’: 2021-07-15T22:05:47,342 include/forcefields/forcefieldmm2.h:97:83: warning: implicitly-declared ‘OpenBabel::OBForceFieldMM2::OBForceFieldMM2(const OpenBabel::OBForceFieldMM2&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:47,342 97 | virtual OBForceFieldMM2* MakeNewInstance(){ return new OBForceFieldMM2(*this); } 2021-07-15T22:05:47,342 | ^ 2021-07-15T22:05:47,342 include/forcefields/forcefieldmm2.h:107:24: note: because ‘OpenBabel::OBForceFieldMM2’ has user-provided ‘OpenBabel::OBForceFieldMM2& OpenBabel::OBForceFieldMM2::operator=(OpenBabel::OBForceFieldMM2&)’ 2021-07-15T22:05:47,343 107 | OBForceFieldMM2 &operator = (OBForceFieldMM2 &); 2021-07-15T22:05:47,343 | ^~~~~~~~ 2021-07-15T22:05:47,353 ./src/forcefields/forcefieldmm2.cpp: In member function ‘double OpenBabel::OBForceFieldMM2::E_Angle()’: 2021-07-15T22:05:47,354 ./src/forcefields/forcefieldmm2.cpp:81:59: warning: variable ‘delta3’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:05:47,354 81 | double e, energy, force, ang, ang_ref, delta, delta2, delta3, delta4, f, dotprod, rab, rab2, rab3, rbc, rbc2, rbc3, root, dotprod_abbc; 2021-07-15T22:05:47,354 | ^~~~~~ 2021-07-15T22:05:47,365 ./src/forcefields/forcefieldmm2.cpp: In member function ‘double OpenBabel::OBForceFieldMM2::E_OOP()’: 2021-07-15T22:05:47,366 ./src/forcefields/forcefieldmm2.cpp:292:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:47,366 292 | for (int idx=0; idx < _ffoutplanebendparams.size(); idx++) { 2021-07-15T22:05:47,366 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:48,594 ./src/forcefields/forcefieldmm2.cpp: In member function ‘OpenBabel::OBForceFieldMM2& OpenBabel::OBForceFieldMM2::operator=(OpenBabel::OBForceFieldMM2&)’: 2021-07-15T22:05:48,594 ./src/forcefields/forcefieldmm2.cpp:503:3: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-15T22:05:48,594 503 | } 2021-07-15T22:05:48,595 | ^ 2021-07-15T22:05:51,712 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:05:51,713 from include/openbabel/mol.h:35, 2021-07-15T22:05:51,713 from ./src/forcefields/forcefieldmm2.cpp:19: 2021-07-15T22:05:51,713 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:05:51,713 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:05:51,713 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:05:51,713 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,437 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldMM2::ParseParamFile()’: 2021-07-15T22:05:52,437 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,437 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,438 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,438 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,438 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,438 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,438 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,438 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,438 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,439 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,439 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,439 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,439 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,439 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,439 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,440 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,440 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,440 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,440 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,441 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,441 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,441 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,441 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,441 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,441 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,441 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,442 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,442 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,442 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,442 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,443 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,443 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,443 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,443 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,443 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,443 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,443 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,444 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,444 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,444 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:52,444 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:05:52,444 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:05:52,444 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:54,760 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:54,761 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o /tmp/ccZ9EsEH.s 2021-07-15T22:05:54,765 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:05:55,634 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:05:55,635 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:05:55,635 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmm2.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:55,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefieldmmff94.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:05:55,649 Using built-in specs. 2021-07-15T22:05:55,650 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:05:55,651 Target: arm-linux-gnueabihf 2021-07-15T22:05:55,651 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:05:55,651 Thread model: posix 2021-07-15T22:05:55,651 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:05:55,652 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:05:55,653 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:05:55,655 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefieldmmff94.cpp -quiet -dumpbase forcefieldmmff94.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccFmhkeW.s 2021-07-15T22:05:55,667 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:55,668 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:55,668 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:55,668 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:05:55,668 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:05:55,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:05:55,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:05:55,669 ignoring duplicate directory "/usr/include/" 2021-07-15T22:05:55,669 as it is a non-system directory that duplicates a system directory 2021-07-15T22:05:55,669 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:05:55,670 #include "..." search starts here: 2021-07-15T22:05:55,670 #include <...> search starts here: 2021-07-15T22:05:55,670 /usr/include/eigen3 2021-07-15T22:05:55,670 include 2021-07-15T22:05:55,670 /usr/include/python3.9 2021-07-15T22:05:55,670 /usr/include/c++/10 2021-07-15T22:05:55,670 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:05:55,671 /usr/include/c++/10/backward 2021-07-15T22:05:55,671 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:05:55,671 /usr/local/include 2021-07-15T22:05:55,671 /usr/include/arm-linux-gnueabihf 2021-07-15T22:05:55,671 /usr/include 2021-07-15T22:05:55,671 End of search list. 2021-07-15T22:05:55,671 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:05:55,672 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:05:55,672 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:05:55,686 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:05:57,264 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:57,264 from include/openbabel/mol.h:43, 2021-07-15T22:05:57,264 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T22:05:57,264 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:05:57,264 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:05:57,264 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:05:57,265 | ^ 2021-07-15T22:05:57,265 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:57,265 37 | # define UNUSED(x) x 2021-07-15T22:05:57,265 | ^ 2021-07-15T22:05:57,877 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:57,877 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T22:05:57,878 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:57,878 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:57,878 862 | {return new OBVibrationData(*this);} 2021-07-15T22:05:57,878 | ^ 2021-07-15T22:05:57,878 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:05:57,878 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:05:57,878 | ^~~~~~~~ 2021-07-15T22:05:57,881 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:57,881 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:57,881 907 | {return new OBDOSData(*this);} 2021-07-15T22:05:57,882 | ^ 2021-07-15T22:05:57,882 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:05:57,882 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:05:57,882 | ^~~~~~~~ 2021-07-15T22:05:57,899 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:57,899 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:57,899 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:05:57,900 | ^ 2021-07-15T22:05:57,900 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:05:57,900 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:05:57,900 | ^~~~~~~~ 2021-07-15T22:05:57,904 In file included from include/openbabel/mol.h:52, 2021-07-15T22:05:57,904 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T22:05:57,904 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:05:57,904 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:05:57,904 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:05:57,905 | ^ 2021-07-15T22:05:57,905 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:05:57,905 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:05:57,905 | ^~~~~~~~ 2021-07-15T22:05:58,275 In file included from include/openbabel/atom.h:33, 2021-07-15T22:05:58,276 from include/openbabel/mol.h:43, 2021-07-15T22:05:58,276 from ./src/forcefields/forcefieldmmff94.cpp:32: 2021-07-15T22:05:58,276 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:05:58,276 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,276 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,276 | ^ 2021-07-15T22:05:58,276 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,277 37 | # define UNUSED(x) x 2021-07-15T22:05:58,277 | ^ 2021-07-15T22:05:58,277 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:05:58,277 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,277 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,277 | ^ 2021-07-15T22:05:58,278 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,278 37 | # define UNUSED(x) x 2021-07-15T22:05:58,278 | ^ 2021-07-15T22:05:58,278 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:05:58,278 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,278 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,278 | ^ 2021-07-15T22:05:58,278 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,279 37 | # define UNUSED(x) x 2021-07-15T22:05:58,279 | ^ 2021-07-15T22:05:58,279 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:05:58,279 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,279 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,279 | ^ 2021-07-15T22:05:58,279 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,280 37 | # define UNUSED(x) x 2021-07-15T22:05:58,280 | ^ 2021-07-15T22:05:58,280 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:05:58,280 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,280 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,280 | ^ 2021-07-15T22:05:58,280 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,280 37 | # define UNUSED(x) x 2021-07-15T22:05:58,281 | ^ 2021-07-15T22:05:58,281 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:05:58,281 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,281 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,281 | ^ 2021-07-15T22:05:58,281 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,282 37 | # define UNUSED(x) x 2021-07-15T22:05:58,282 | ^ 2021-07-15T22:05:58,282 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:05:58,282 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,282 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,282 | ^ 2021-07-15T22:05:58,282 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,282 37 | # define UNUSED(x) x 2021-07-15T22:05:58,283 | ^ 2021-07-15T22:05:58,283 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:05:58,283 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:05:58,283 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:05:58,283 | ^ 2021-07-15T22:05:58,283 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:05:58,283 37 | # define UNUSED(x) x 2021-07-15T22:05:58,284 | ^ 2021-07-15T22:05:58,547 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: 2021-07-15T22:05:58,547 ./src/forcefields/forcefieldmmff94.cpp:2790:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:05:58,548 2790 | int angletype, strbndtype, bondtype1, bondtype2; 2021-07-15T22:05:58,548 | ^~~~~~~~~ 2021-07-15T22:05:58,548 ./src/forcefields/forcefieldmmff94.cpp:2790:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:05:58,548 2790 | int angletype, strbndtype, bondtype1, bondtype2; 2021-07-15T22:05:58,548 | ^~~~~~~~~ 2021-07-15T22:05:58,943 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: 2021-07-15T22:05:58,943 include/forcefields/forcefieldmmff94.h:288:41: required from here 2021-07-15T22:05:58,943 ./src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,943 140 | for (int i = 0; i < _bondcalculations.size(); ++i) { 2021-07-15T22:05:58,943 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,945 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: 2021-07-15T22:05:58,945 include/forcefields/forcefieldmmff94.h:288:59: required from here 2021-07-15T22:05:58,945 ./src/forcefields/forcefieldmmff94.cpp:140:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,947 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: 2021-07-15T22:05:58,947 include/forcefields/forcefieldmmff94.h:294:42: required from here 2021-07-15T22:05:58,947 ./src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,947 255 | for (int i = 0; i < _anglecalculations.size(); ++i) { 2021-07-15T22:05:58,948 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,949 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: 2021-07-15T22:05:58,949 include/forcefields/forcefieldmmff94.h:294:61: required from here 2021-07-15T22:05:58,950 ./src/forcefields/forcefieldmmff94.cpp:255:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,951 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: 2021-07-15T22:05:58,952 include/forcefields/forcefieldmmff94.h:300:43: required from here 2021-07-15T22:05:58,952 ./src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,952 368 | for (int i = 0; i < _strbndcalculations.size(); ++i) { 2021-07-15T22:05:58,952 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,954 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: 2021-07-15T22:05:58,954 include/forcefields/forcefieldmmff94.h:300:63: required from here 2021-07-15T22:05:58,954 ./src/forcefields/forcefieldmmff94.cpp:368:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,956 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: 2021-07-15T22:05:58,956 include/forcefields/forcefieldmmff94.h:306:44: required from here 2021-07-15T22:05:58,956 ./src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,957 504 | for (int i = 0; i < _torsioncalculations.size(); ++i) { 2021-07-15T22:05:58,957 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,959 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: 2021-07-15T22:05:58,959 include/forcefields/forcefieldmmff94.h:306:65: required from here 2021-07-15T22:05:58,959 ./src/forcefields/forcefieldmmff94.cpp:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,961 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: 2021-07-15T22:05:58,961 include/forcefields/forcefieldmmff94.h:312:40: required from here 2021-07-15T22:05:58,962 ./src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,962 602 | for (int i = 0; i < _oopcalculations.size(); ++i) { 2021-07-15T22:05:58,962 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,964 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: 2021-07-15T22:05:58,964 include/forcefields/forcefieldmmff94.h:312:57: required from here 2021-07-15T22:05:58,964 ./src/forcefields/forcefieldmmff94.cpp:602:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,966 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: 2021-07-15T22:05:58,966 include/forcefields/forcefieldmmff94.h:318:40: required from here 2021-07-15T22:05:58,966 ./src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,967 699 | for (int i = 0; i < _vdwcalculations.size(); ++i) { 2021-07-15T22:05:58,967 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,968 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: 2021-07-15T22:05:58,968 include/forcefields/forcefieldmmff94.h:318:57: required from here 2021-07-15T22:05:58,968 ./src/forcefields/forcefieldmmff94.cpp:699:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,970 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: 2021-07-15T22:05:58,970 include/forcefields/forcefieldmmff94.h:324:50: required from here 2021-07-15T22:05:58,970 ./src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:05:58,971 785 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { 2021-07-15T22:05:58,971 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:05:58,972 ./src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: 2021-07-15T22:05:58,972 include/forcefields/forcefieldmmff94.h:324:77: required from here 2021-07-15T22:05:58,973 ./src/forcefields/forcefieldmmff94.cpp:785:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:06:00,321 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘int OpenBabel::OBForceFieldMMFF94::GetStrBndType(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)’: 2021-07-15T22:06:00,321 ./src/forcefields/forcefieldmmff94.cpp:4540:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:06:00,321 4540 | if (btbc) { 2021-07-15T22:06:00,322 | ^~ 2021-07-15T22:06:00,322 ./src/forcefields/forcefieldmmff94.cpp:4548:5: note: here 2021-07-15T22:06:00,322 4548 | case 2: 2021-07-15T22:06:00,322 | ^~~~ 2021-07-15T22:06:00,322 ./src/forcefields/forcefieldmmff94.cpp:4565:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:06:00,322 4565 | if (btbc) { 2021-07-15T22:06:00,322 | ^~ 2021-07-15T22:06:00,322 ./src/forcefields/forcefieldmmff94.cpp:4573:5: note: here 2021-07-15T22:06:00,323 4573 | case 6: 2021-07-15T22:06:00,323 | ^~~~ 2021-07-15T22:06:00,323 ./src/forcefields/forcefieldmmff94.cpp:4584:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:06:00,323 4584 | if (btbc) { 2021-07-15T22:06:00,323 | ^~ 2021-07-15T22:06:00,323 ./src/forcefields/forcefieldmmff94.cpp:4592:5: note: here 2021-07-15T22:06:00,323 4592 | case 8: 2021-07-15T22:06:00,323 | ^~~~ 2021-07-15T22:06:04,038 ./src/forcefields/forcefieldmmff94.cpp: In member function ‘bool OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: 2021-07-15T22:06:04,038 ./src/forcefields/forcefieldmmff94.cpp:1443:30: warning: ‘first_rj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:06:04,038 1443 | ringbond = _mol.GetBond(first_rj, index); 2021-07-15T22:06:04,038 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:06:04,039 ./src/forcefields/forcefieldmmff94.cpp:1443:30: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:06:06,619 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:06,619 from include/openbabel/obconversion.h:30, 2021-07-15T22:06:06,619 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T22:06:06,620 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationMMFF94&}; _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:06,620 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:06,620 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:06,620 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:06,754 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationMMFF94&}; _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:06,755 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:06,943 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFStrBndCalculationMMFF94&}; _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:06,943 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:07,605 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationMMFF94&}; _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:07,605 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:07,828 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationMMFF94&}; _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:07,828 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:07,993 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:07,994 from include/openbabel/obconversion.h:30, 2021-07-15T22:06:07,994 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T22:06:07,994 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:07,994 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:07,994 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:07,994 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:08,085 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:08,085 from include/openbabel/obconversion.h:30, 2021-07-15T22:06:08,086 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T22:06:08,086 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationMMFF94&}; _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:08,086 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:08,086 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:08,086 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:08,249 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationMMFF94&}; _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator]’: 2021-07-15T22:06:08,249 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:09,019 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:09,019 from include/openbabel/obconversion.h:30, 2021-07-15T22:06:09,020 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T22:06:09,020 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: 2021-07-15T22:06:09,020 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,020 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,020 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,020 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,020 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,021 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,025 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,025 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,025 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,027 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,027 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,027 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,033 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,033 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,033 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,036 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,036 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,036 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,037 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,037 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,037 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,042 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,042 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,042 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:09,044 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:09,045 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:09,045 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:11,782 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:11,782 from include/openbabel/obconversion.h:30, 2021-07-15T22:06:11,782 from ./src/forcefields/forcefieldmmff94.cpp:31: 2021-07-15T22:06:11,782 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:11,782 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:11,783 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:11,783 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:11,812 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:11,812 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:11,813 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:11,813 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:12,753 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)’: 2021-07-15T22:06:12,754 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:12,754 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:12,754 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:12,754 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:12,754 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:12,754 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,021 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::string&)’: 2021-07-15T22:06:13,021 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,021 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,021 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,295 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)’: 2021-07-15T22:06:13,295 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,295 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,296 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,296 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,296 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,561 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::string&)’: 2021-07-15T22:06:13,561 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,562 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,826 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)’: 2021-07-15T22:06:13,826 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,827 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,827 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:13,827 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:13,827 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:13,827 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,100 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)’: 2021-07-15T22:06:14,100 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,100 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,100 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,101 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,101 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,101 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,674 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)’: 2021-07-15T22:06:14,674 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,674 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,674 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,674 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,675 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,675 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,957 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)’: 2021-07-15T22:06:14,958 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,958 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,958 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:14,958 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:14,958 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:14,958 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,250 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)’: 2021-07-15T22:06:15,250 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,250 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,250 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,251 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,251 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,251 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,251 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,251 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,251 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,251 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,252 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,252 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,561 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)’: 2021-07-15T22:06:15,561 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,561 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,561 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,561 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,562 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:15,562 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:15,562 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:15,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:20,183 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::Validate()’: 2021-07-15T22:06:20,183 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:20,184 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:20,184 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:22,349 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:22,349 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o /tmp/ccFmhkeW.s 2021-07-15T22:06:22,354 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:24,653 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:24,654 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:24,654 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefieldmmff94.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:24,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/forcefields/forcefielduff.cpp -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:24,672 Using built-in specs. 2021-07-15T22:06:24,673 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:24,673 Target: arm-linux-gnueabihf 2021-07-15T22:06:24,674 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:24,674 Thread model: posix 2021-07-15T22:06:24,674 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:24,674 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:24,675 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:24,678 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/forcefields/forcefielduff.cpp -quiet -dumpbase forcefielduff.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpHdsLt.s 2021-07-15T22:06:24,690 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:24,690 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:24,691 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:24,691 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:24,691 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:24,691 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:24,691 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:24,692 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:24,692 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:24,692 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:24,692 #include "..." search starts here: 2021-07-15T22:06:24,692 #include <...> search starts here: 2021-07-15T22:06:24,692 /usr/include/eigen3 2021-07-15T22:06:24,693 include 2021-07-15T22:06:24,693 /usr/include/python3.9 2021-07-15T22:06:24,693 /usr/include/c++/10 2021-07-15T22:06:24,693 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:24,693 /usr/include/c++/10/backward 2021-07-15T22:06:24,693 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:24,694 /usr/local/include 2021-07-15T22:06:24,694 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:24,694 /usr/include 2021-07-15T22:06:24,694 End of search list. 2021-07-15T22:06:24,694 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:24,694 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:24,695 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:24,710 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:26,073 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:26,073 from include/openbabel/mol.h:43, 2021-07-15T22:06:26,073 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:26,073 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:26,073 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:26,073 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:26,074 | ^ 2021-07-15T22:06:26,074 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:26,074 37 | # define UNUSED(x) x 2021-07-15T22:06:26,074 | ^ 2021-07-15T22:06:26,766 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:26,766 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:26,766 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:26,767 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:26,767 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:26,767 | ^ 2021-07-15T22:06:26,767 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:26,767 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:26,767 | ^~~~~~~~ 2021-07-15T22:06:26,770 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:26,770 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:26,770 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:26,770 | ^ 2021-07-15T22:06:26,770 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:26,771 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:26,771 | ^~~~~~~~ 2021-07-15T22:06:26,786 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:26,786 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:26,787 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:26,787 | ^ 2021-07-15T22:06:26,787 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:26,787 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:26,787 | ^~~~~~~~ 2021-07-15T22:06:26,791 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:26,791 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:26,791 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:26,792 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:26,792 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:26,792 | ^ 2021-07-15T22:06:26,792 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:26,792 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:26,792 | ^~~~~~~~ 2021-07-15T22:06:27,178 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:27,178 from include/openbabel/mol.h:43, 2021-07-15T22:06:27,178 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:27,178 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:06:27,178 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,179 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,179 | ^ 2021-07-15T22:06:27,179 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,179 37 | # define UNUSED(x) x 2021-07-15T22:06:27,179 | ^ 2021-07-15T22:06:27,179 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:06:27,180 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,180 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,180 | ^ 2021-07-15T22:06:27,180 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,180 37 | # define UNUSED(x) x 2021-07-15T22:06:27,180 | ^ 2021-07-15T22:06:27,180 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:06:27,181 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,181 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,181 | ^ 2021-07-15T22:06:27,181 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,181 37 | # define UNUSED(x) x 2021-07-15T22:06:27,181 | ^ 2021-07-15T22:06:27,182 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:06:27,182 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,182 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,182 | ^ 2021-07-15T22:06:27,182 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,182 37 | # define UNUSED(x) x 2021-07-15T22:06:27,182 | ^ 2021-07-15T22:06:27,182 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:06:27,183 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,183 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,183 | ^ 2021-07-15T22:06:27,183 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,183 37 | # define UNUSED(x) x 2021-07-15T22:06:27,183 | ^ 2021-07-15T22:06:27,183 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:06:27,184 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,184 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,184 | ^ 2021-07-15T22:06:27,184 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,184 37 | # define UNUSED(x) x 2021-07-15T22:06:27,184 | ^ 2021-07-15T22:06:27,184 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:06:27,184 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,185 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,185 | ^ 2021-07-15T22:06:27,185 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,185 37 | # define UNUSED(x) x 2021-07-15T22:06:27,185 | ^ 2021-07-15T22:06:27,185 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:06:27,185 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:06:27,185 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:06:27,186 | ^ 2021-07-15T22:06:27,186 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:27,186 37 | # define UNUSED(x) x 2021-07-15T22:06:27,186 | ^ 2021-07-15T22:06:27,991 ./src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: 2021-07-15T22:06:27,992 ./src/forcefields/forcefielduff.cpp:470:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 2021-07-15T22:06:27,992 include/forcefields/forcefielduff.h:192:38: required from here 2021-07-15T22:06:27,992 ./src/forcefields/forcefielduff.cpp:423:14: warning: unused variable ‘ab’ [-Wunused-variable] 2021-07-15T22:06:27,992 423 | double ab[3]; 2021-07-15T22:06:27,992 | ^~ 2021-07-15T22:06:27,992 ./src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: 2021-07-15T22:06:27,993 ./src/forcefields/forcefielduff.cpp:470:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 2021-07-15T22:06:27,993 include/forcefields/forcefielduff.h:192:55: required from here 2021-07-15T22:06:27,993 ./src/forcefields/forcefielduff.cpp:423:14: warning: unused variable ‘ab’ [-Wunused-variable] 2021-07-15T22:06:33,907 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:33,907 from include/openbabel/mol.h:35, 2021-07-15T22:06:33,907 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:33,908 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationUFF&}; _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:33,908 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:33,908 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:33,908 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:34,042 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationUFF&}; _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:34,042 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:34,208 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationUFF&}; _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:34,209 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:34,438 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationUFF&}; _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:34,438 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:34,656 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationUFF&}; _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:34,656 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:35,710 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:35,710 from include/openbabel/mol.h:35, 2021-07-15T22:06:35,710 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:35,710 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()’: 2021-07-15T22:06:35,710 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,710 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,710 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,716 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,716 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,716 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,719 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,719 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,719 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,726 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,726 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,726 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,730 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,731 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,731 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,732 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,732 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,732 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,733 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,734 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,734 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:35,736 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:35,737 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:35,737 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:38,659 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:38,659 from include/openbabel/mol.h:35, 2021-07-15T22:06:38,659 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:38,660 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationUFF&}; _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator]’: 2021-07-15T22:06:38,660 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:38,660 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:38,660 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:38,812 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:06:38,812 from include/openbabel/mol.h:35, 2021-07-15T22:06:38,812 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:38,812 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: 2021-07-15T22:06:38,812 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:38,812 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:06:38,813 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:06:39,070 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:06:39,070 from include/openbabel/mol.h:35, 2021-07-15T22:06:39,071 from ./src/forcefields/forcefielduff.cpp:21: 2021-07-15T22:06:39,071 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:06:39,071 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:06:39,071 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:06:39,071 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,254 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()’: 2021-07-15T22:06:42,254 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,254 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,255 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,255 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,255 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,256 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,256 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,256 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,256 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,257 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,257 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,257 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,258 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,258 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,258 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,259 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,259 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,259 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,260 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,260 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,260 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,260 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,260 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,261 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,261 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,261 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,261 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:42,262 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:06:42,262 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:06:42,262 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:44,571 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:44,573 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o /tmp/ccpHdsLt.s 2021-07-15T22:06:44,578 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:45,966 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:45,966 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:45,966 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/forcefields/forcefielduff.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:45,972 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/format.cpp -o build/temp.linux-armv7l-3.9/./src/format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:45,983 Using built-in specs. 2021-07-15T22:06:45,984 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:45,984 Target: arm-linux-gnueabihf 2021-07-15T22:06:45,984 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:45,985 Thread model: posix 2021-07-15T22:06:45,985 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:45,985 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:45,985 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:45,985 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/format.cpp -quiet -dumpbase format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8N10aL.s 2021-07-15T22:06:45,999 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:45,999 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:46,000 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:46,001 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:46,001 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:46,002 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:46,002 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:46,002 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:46,002 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:46,002 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:46,003 #include "..." search starts here: 2021-07-15T22:06:46,003 #include <...> search starts here: 2021-07-15T22:06:46,003 /usr/include/eigen3 2021-07-15T22:06:46,003 include 2021-07-15T22:06:46,003 /usr/include/python3.9 2021-07-15T22:06:46,003 /usr/include/c++/10 2021-07-15T22:06:46,004 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:46,004 /usr/include/c++/10/backward 2021-07-15T22:06:46,004 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:46,004 /usr/local/include 2021-07-15T22:06:46,004 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:46,004 /usr/include 2021-07-15T22:06:46,005 End of search list. 2021-07-15T22:06:46,005 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:46,005 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:46,005 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:46,020 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:48,282 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:48,283 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/format.o /tmp/cc8N10aL.s 2021-07-15T22:06:48,287 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:48,407 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:48,408 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:48,408 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:48,411 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/APIInterface.cpp -o build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:48,418 Using built-in specs. 2021-07-15T22:06:48,419 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:48,419 Target: arm-linux-gnueabihf 2021-07-15T22:06:48,419 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:48,419 Thread model: posix 2021-07-15T22:06:48,419 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:48,420 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:48,420 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:48,420 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/APIInterface.cpp -quiet -dumpbase APIInterface.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccIQg4ZY.s 2021-07-15T22:06:48,432 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:48,433 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:48,433 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:48,433 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:48,433 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:48,434 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:48,434 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:48,434 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:48,434 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:48,435 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:48,435 #include "..." search starts here: 2021-07-15T22:06:48,435 #include <...> search starts here: 2021-07-15T22:06:48,435 /usr/include/eigen3 2021-07-15T22:06:48,435 include 2021-07-15T22:06:48,436 /usr/include/python3.9 2021-07-15T22:06:48,436 /usr/include/c++/10 2021-07-15T22:06:48,436 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:48,436 /usr/include/c++/10/backward 2021-07-15T22:06:48,436 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:48,436 /usr/local/include 2021-07-15T22:06:48,437 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:48,437 /usr/include 2021-07-15T22:06:48,437 End of search list. 2021-07-15T22:06:48,437 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:48,437 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:48,438 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:48,454 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:50,610 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:50,610 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o /tmp/ccIQg4ZY.s 2021-07-15T22:06:50,615 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:50,724 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:50,725 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:50,725 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/APIInterface.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:50,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/ArrayList.c -o build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:50,734 Using built-in specs. 2021-07-15T22:06:50,736 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:50,736 Target: arm-linux-gnueabihf 2021-07-15T22:06:50,736 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:50,736 Thread model: posix 2021-07-15T22:06:50,736 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:50,736 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:50,737 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:50,737 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1 -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/ArrayList.c -quiet -dumpbase ArrayList.c -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccXfLSch.s 2021-07-15T22:06:50,748 cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C 2021-07-15T22:06:50,748 GNU C17 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:50,748 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:50,748 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:50,749 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:50,749 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:50,749 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:50,749 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:50,749 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:50,749 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:50,749 #include "..." search starts here: 2021-07-15T22:06:50,750 #include <...> search starts here: 2021-07-15T22:06:50,750 /usr/include/eigen3 2021-07-15T22:06:50,750 include 2021-07-15T22:06:50,750 /usr/include/python3.9 2021-07-15T22:06:50,750 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:50,750 /usr/local/include 2021-07-15T22:06:50,750 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:50,750 /usr/include 2021-07-15T22:06:50,751 End of search list. 2021-07-15T22:06:50,751 GNU C17 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:50,751 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:50,751 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:50,761 Compiler executable checksum: b0c2f0ffcfbe7fc710aaf45c31c63944 2021-07-15T22:06:50,964 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:50,964 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o /tmp/ccXfLSch.s 2021-07-15T22:06:50,969 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:50,995 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:50,995 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:50,995 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ArrayList.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:50,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/CSRformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:51,004 Using built-in specs. 2021-07-15T22:06:51,005 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:51,005 Target: arm-linux-gnueabihf 2021-07-15T22:06:51,006 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:51,006 Thread model: posix 2021-07-15T22:06:51,006 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:51,006 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:51,006 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:51,006 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/CSRformat.cpp -quiet -dumpbase CSRformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccP2jfAs.s 2021-07-15T22:06:51,018 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:51,018 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:51,019 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:51,019 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:51,019 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:51,019 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:51,020 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:51,020 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:51,020 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:51,020 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:51,021 #include "..." search starts here: 2021-07-15T22:06:51,021 #include <...> search starts here: 2021-07-15T22:06:51,021 /usr/include/eigen3 2021-07-15T22:06:51,021 include 2021-07-15T22:06:51,021 /usr/include/python3.9 2021-07-15T22:06:51,022 /usr/include/c++/10 2021-07-15T22:06:51,022 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:51,022 /usr/include/c++/10/backward 2021-07-15T22:06:51,022 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:51,022 /usr/local/include 2021-07-15T22:06:51,023 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:51,023 /usr/include 2021-07-15T22:06:51,023 End of search list. 2021-07-15T22:06:51,023 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:51,023 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:51,024 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:51,038 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:52,393 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:52,393 from include/openbabel/mol.h:43, 2021-07-15T22:06:52,393 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:52,394 from ./src/formats/CSRformat.cpp:17: 2021-07-15T22:06:52,394 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:52,394 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:52,394 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:52,394 | ^ 2021-07-15T22:06:52,394 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:52,394 37 | # define UNUSED(x) x 2021-07-15T22:06:52,395 | ^ 2021-07-15T22:06:53,088 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:53,088 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:53,088 from ./src/formats/CSRformat.cpp:17: 2021-07-15T22:06:53,088 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:53,089 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:53,089 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:53,089 | ^ 2021-07-15T22:06:53,089 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:53,089 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:53,089 | ^~~~~~~~ 2021-07-15T22:06:53,092 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:53,092 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:53,092 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:53,092 | ^ 2021-07-15T22:06:53,092 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:53,092 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:53,093 | ^~~~~~~~ 2021-07-15T22:06:53,108 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:53,108 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:53,109 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:53,109 | ^ 2021-07-15T22:06:53,109 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:53,109 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:53,109 | ^~~~~~~~ 2021-07-15T22:06:53,113 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:53,113 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:53,113 from ./src/formats/CSRformat.cpp:17: 2021-07-15T22:06:53,114 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:53,114 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:53,114 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:53,114 | ^ 2021-07-15T22:06:53,114 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:53,114 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:53,114 | ^~~~~~~~ 2021-07-15T22:06:55,200 In file included from /usr/include/string.h:495, 2021-07-15T22:06:55,200 from /usr/include/c++/10/cstring:42, 2021-07-15T22:06:55,200 from include/openbabel/data.h:26, 2021-07-15T22:06:55,200 from include/openbabel/mol.h:46, 2021-07-15T22:06:55,201 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:55,201 from ./src/formats/CSRformat.cpp:17: 2021-07-15T22:06:55,201 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:06:55,201 inlined from ‘char* OpenBabel::CSRFormat::PadString(char*, int)’ at ./src/formats/CSRformat.cpp:188:12: 2021-07-15T22:06:55,201 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2021-07-15T22:06:55,201 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:06:55,201 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:55,202 ./src/formats/CSRformat.cpp: In member function ‘char* OpenBabel::CSRFormat::PadString(char*, int)’: 2021-07-15T22:06:55,202 ./src/formats/CSRformat.cpp:188:12: note: length computed here 2021-07-15T22:06:55,202 188 | strncpy(output, input, strlen(input)); 2021-07-15T22:06:55,202 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:55,414 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:55,414 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o /tmp/ccP2jfAs.s 2021-07-15T22:06:55,420 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:06:55,606 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:06:55,607 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:06:55,607 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/CSRformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:55,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/MCDLformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:06:55,617 Using built-in specs. 2021-07-15T22:06:55,618 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:06:55,618 Target: arm-linux-gnueabihf 2021-07-15T22:06:55,618 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:06:55,619 Thread model: posix 2021-07-15T22:06:55,619 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:06:55,619 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:06:55,619 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:06:55,619 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/MCDLformat.cpp -quiet -dumpbase MCDLformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/MCDLformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmKoZLO.s 2021-07-15T22:06:55,630 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:55,631 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:55,631 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:55,631 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:06:55,631 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:06:55,631 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:06:55,631 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:06:55,632 ignoring duplicate directory "/usr/include/" 2021-07-15T22:06:55,632 as it is a non-system directory that duplicates a system directory 2021-07-15T22:06:55,632 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:06:55,632 #include "..." search starts here: 2021-07-15T22:06:55,632 #include <...> search starts here: 2021-07-15T22:06:55,632 /usr/include/eigen3 2021-07-15T22:06:55,633 include 2021-07-15T22:06:55,633 /usr/include/python3.9 2021-07-15T22:06:55,633 /usr/include/c++/10 2021-07-15T22:06:55,633 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:06:55,633 /usr/include/c++/10/backward 2021-07-15T22:06:55,633 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:06:55,633 /usr/local/include 2021-07-15T22:06:55,633 /usr/include/arm-linux-gnueabihf 2021-07-15T22:06:55,634 /usr/include 2021-07-15T22:06:55,634 End of search list. 2021-07-15T22:06:55,634 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:06:55,634 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:06:55,635 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:06:55,649 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:06:57,013 In file included from include/openbabel/atom.h:33, 2021-07-15T22:06:57,013 from include/openbabel/mol.h:43, 2021-07-15T22:06:57,013 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:57,013 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T22:06:57,013 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:06:57,014 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:06:57,014 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:06:57,014 | ^ 2021-07-15T22:06:57,014 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:06:57,014 37 | # define UNUSED(x) x 2021-07-15T22:06:57,014 | ^ 2021-07-15T22:06:57,709 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:57,709 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:57,710 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T22:06:57,710 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:57,710 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:57,710 862 | {return new OBVibrationData(*this);} 2021-07-15T22:06:57,710 | ^ 2021-07-15T22:06:57,710 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:06:57,710 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:06:57,711 | ^~~~~~~~ 2021-07-15T22:06:57,713 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:57,713 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:57,713 907 | {return new OBDOSData(*this);} 2021-07-15T22:06:57,713 | ^ 2021-07-15T22:06:57,714 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:06:57,714 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:06:57,714 | ^~~~~~~~ 2021-07-15T22:06:57,729 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:57,730 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:57,730 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:06:57,730 | ^ 2021-07-15T22:06:57,730 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:06:57,730 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:06:57,730 | ^~~~~~~~ 2021-07-15T22:06:57,734 In file included from include/openbabel/mol.h:52, 2021-07-15T22:06:57,734 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:06:57,735 from ./src/formats/MCDLformat.cpp:21: 2021-07-15T22:06:57,735 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:06:57,735 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:06:57,735 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:06:57,735 | ^ 2021-07-15T22:06:57,735 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:06:57,735 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:06:57,736 | ^~~~~~~~ 2021-07-15T22:06:58,029 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,029 ./src/formats/MCDLformat.cpp:152:5: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,029 152 | }; 2021-07-15T22:06:58,029 | ^ 2021-07-15T22:06:58,029 ./src/formats/MCDLformat.cpp:169:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,029 169 | }; 2021-07-15T22:06:58,030 | ^ 2021-07-15T22:06:58,033 ./src/formats/MCDLformat.cpp: In member function ‘std::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)’: 2021-07-15T22:06:58,033 ./src/formats/MCDLformat.cpp:174:66: warning: unused parameter ‘tstr’ [-Wunused-parameter] 2021-07-15T22:06:58,033 174 | string MCDLFormat::constring(int conntab [MAXBONDS][4], char * tstr) 2021-07-15T22:06:58,034 | ~~~~~~~^~~~ 2021-07-15T22:06:58,035 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: 2021-07-15T22:06:58,035 ./src/formats/MCDLformat.cpp:278:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:06:58,036 278 | if (jflag) 2021-07-15T22:06:58,036 | ^~ 2021-07-15T22:06:58,036 ./src/formats/MCDLformat.cpp:282:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:06:58,036 282 | nt = 1; 2021-07-15T22:06:58,036 | ^~ 2021-07-15T22:06:58,043 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,044 ./src/formats/MCDLformat.cpp:475:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,044 475 | }; 2021-07-15T22:06:58,044 | ^ 2021-07-15T22:06:58,075 ./src/formats/MCDLformat.cpp: In member function ‘std::string OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*, bool)’: 2021-07-15T22:06:58,075 ./src/formats/MCDLformat.cpp:529:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:06:58,075 529 | bool test;//, testParity; 2021-07-15T22:06:58,075 | ^~~~ 2021-07-15T22:06:58,078 ./src/formats/MCDLformat.cpp:479:48: warning: unused parameter ‘includeCoordinates’ [-Wunused-parameter] 2021-07-15T22:06:58,079 479 | string MCDLFormat::getMCDL(OBMol* pmol, bool includeCoordinates) { 2021-07-15T22:06:58,079 | ~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:58,080 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,080 ./src/formats/MCDLformat.cpp:946:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,080 946 | }; 2021-07-15T22:06:58,081 | ^ 2021-07-15T22:06:58,081 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::restoreFullMCDL(std::string, OpenBabel::OBMol*)’: 2021-07-15T22:06:58,081 ./src/formats/MCDLformat.cpp:948:43: warning: unused parameter ‘value’ [-Wunused-parameter] 2021-07-15T22:06:58,081 948 | void MCDLFormat::restoreFullMCDL(string value, OBMol* pmol) { 2021-07-15T22:06:58,081 | ~~~~~~~^~~~~ 2021-07-15T22:06:58,081 ./src/formats/MCDLformat.cpp:948:57: warning: unused parameter ‘pmol’ [-Wunused-parameter] 2021-07-15T22:06:58,082 948 | void MCDLFormat::restoreFullMCDL(string value, OBMol* pmol) { 2021-07-15T22:06:58,082 | ~~~~~~~^~~~ 2021-07-15T22:06:58,082 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,082 ./src/formats/MCDLformat.cpp:950:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,082 950 | }; 2021-07-15T22:06:58,082 | ^ 2021-07-15T22:06:58,090 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)’: 2021-07-15T22:06:58,090 ./src/formats/MCDLformat.cpp:1031:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T22:06:58,090 1031 | if (n1 < 0) n1=indexOf(s,"-"); 2021-07-15T22:06:58,090 | ~~~^~~ 2021-07-15T22:06:58,090 ./src/formats/MCDLformat.cpp:1032:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T22:06:58,091 1032 | if (n1 < 0) n1=indexOf(s,"*"); 2021-07-15T22:06:58,091 | ~~~^~~ 2021-07-15T22:06:58,091 ./src/formats/MCDLformat.cpp:1033:14: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T22:06:58,091 1033 | if (n1 < 0) { 2021-07-15T22:06:58,091 | ~~~^~~ 2021-07-15T22:06:58,093 ./src/formats/MCDLformat.cpp:1062:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,093 1062 | if (n1>=0) { 2021-07-15T22:06:58,093 | ~~^~~ 2021-07-15T22:06:58,094 ./src/formats/MCDLformat.cpp:1070:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,094 1070 | if (n1>=0) { 2021-07-15T22:06:58,094 | ~~^~~ 2021-07-15T22:06:58,096 ./src/formats/MCDLformat.cpp:1079:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,096 1079 | if (n1>=0) { 2021-07-15T22:06:58,096 | ~~^~~ 2021-07-15T22:06:58,098 ./src/formats/MCDLformat.cpp:1092:9: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,098 1092 | if (n1>=0) { 2021-07-15T22:06:58,099 | ~~^~~ 2021-07-15T22:06:58,101 ./src/formats/MCDLformat.cpp:1118:11: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T22:06:58,102 1118 | if (n1<0) { 2021-07-15T22:06:58,102 | ~~^~ 2021-07-15T22:06:58,102 ./src/formats/MCDLformat.cpp:1121:25: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,102 1121 | if ((n2=0)) n1=n2; 2021-07-15T22:06:58,102 | ~~^~~ 2021-07-15T22:06:58,112 ./src/formats/MCDLformat.cpp:1266:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:06:58,113 1266 | if (nPrev == acount) { 2021-07-15T22:06:58,113 | ~~~~~~^~~~~~~~~ 2021-07-15T22:06:58,115 ./src/formats/MCDLformat.cpp:1298:11: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 2021-07-15T22:06:58,115 1298 | if (n1<0) n1=n2; else if ((n2=0)) n1=n2; 2021-07-15T22:06:58,115 | ~~^~ 2021-07-15T22:06:58,115 ./src/formats/MCDLformat.cpp:1298:45: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,115 1298 | if (n1<0) n1=n2; else if ((n2=0)) n1=n2; 2021-07-15T22:06:58,116 | ~~^~~ 2021-07-15T22:06:58,116 ./src/formats/MCDLformat.cpp:1300:12: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,116 1300 | if ((n1>=0) && (value.length() > n1)) { 2021-07-15T22:06:58,116 | ~~^~~ 2021-07-15T22:06:58,116 ./src/formats/MCDLformat.cpp:1312:13: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,116 1312 | if (n1>=0) { 2021-07-15T22:06:58,116 | ~~^~~ 2021-07-15T22:06:58,125 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,125 ./src/formats/MCDLformat.cpp:1353:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,125 1353 | }; 2021-07-15T22:06:58,125 | ^ 2021-07-15T22:06:58,126 ./src/formats/MCDLformat.cpp:1379:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,127 1379 | }; 2021-07-15T22:06:58,127 | ^ 2021-07-15T22:06:58,127 ./src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)’: 2021-07-15T22:06:58,127 ./src/formats/MCDLformat.cpp:1384:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-15T22:06:58,127 1384 | if (result == string::npos) result=-1; 2021-07-15T22:06:58,127 | ~~~~~~~^~~~~~~~~~~~~~~ 2021-07-15T22:06:58,128 ./src/formats/MCDLformat.cpp:1385:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:06:58,128 1385 | if (result >= instring.length()) result=-1; 2021-07-15T22:06:58,128 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:06:58,128 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,128 ./src/formats/MCDLformat.cpp:1387:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,128 1387 | }; 2021-07-15T22:06:58,128 | ^ 2021-07-15T22:06:58,129 ./src/formats/MCDLformat.cpp: In member function ‘int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)’: 2021-07-15T22:06:58,129 ./src/formats/MCDLformat.cpp:1398:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-15T22:06:58,129 1398 | if (n == string::npos) 2021-07-15T22:06:58,129 | ~~^~~~~~~~~~~~~~~ 2021-07-15T22:06:58,129 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,129 ./src/formats/MCDLformat.cpp:1408:4: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,129 1408 | }; 2021-07-15T22:06:58,129 | ^ 2021-07-15T22:06:58,130 ./src/formats/MCDLformat.cpp: In member function ‘bool OpenBabel::MCDLFormat::parseFormula(std::string, std::vector&)’: 2021-07-15T22:06:58,130 ./src/formats/MCDLformat.cpp:1426:14: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,130 1426 | if (n>=0) { 2021-07-15T22:06:58,131 | ~^~~ 2021-07-15T22:06:58,133 ./src/formats/MCDLformat.cpp:1449:14: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 2021-07-15T22:06:58,133 1449 | if (n>=0) { 2021-07-15T22:06:58,133 | ~^~~ 2021-07-15T22:06:58,136 ./src/formats/MCDLformat.cpp: At global scope: 2021-07-15T22:06:58,136 ./src/formats/MCDLformat.cpp:1467:2: warning: extra ‘;’ [-Wpedantic] 2021-07-15T22:06:58,136 1467 | }; 2021-07-15T22:06:58,136 | ^ 2021-07-15T22:07:01,715 ./src/formats/MCDLformat.cpp: In member function ‘void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)’: 2021-07-15T22:07:01,715 ./src/formats/MCDLformat.cpp:395:22: warning: ‘dupfrag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:01,715 395 | else if (ix[i] == dupfrag && j != dupnum) 2021-07-15T22:07:01,715 | ^~ 2021-07-15T22:07:01,715 ./src/formats/MCDLformat.cpp:237:28: warning: ‘jump’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:01,716 237 | int numdups, dupfrag, jump; 2021-07-15T22:07:01,716 | ^~~~ 2021-07-15T22:07:01,716 ./src/formats/MCDLformat.cpp:385:24: warning: ‘numdups’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:01,716 385 | for (j=0; j search starts here: 2021-07-15T22:07:17,235 /usr/include/eigen3 2021-07-15T22:07:17,235 include 2021-07-15T22:07:17,235 /usr/include/python3.9 2021-07-15T22:07:17,235 /usr/include/c++/10 2021-07-15T22:07:17,235 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:17,235 /usr/include/c++/10/backward 2021-07-15T22:07:17,235 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:17,236 /usr/local/include 2021-07-15T22:07:17,236 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:17,236 /usr/include 2021-07-15T22:07:17,236 End of search list. 2021-07-15T22:07:17,236 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:17,236 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:17,237 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:17,250 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:18,627 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:18,627 from include/openbabel/mol.h:43, 2021-07-15T22:07:18,627 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:18,627 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:07:18,627 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:18,628 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:18,628 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:18,628 | ^ 2021-07-15T22:07:18,628 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:18,628 37 | # define UNUSED(x) x 2021-07-15T22:07:18,628 | ^ 2021-07-15T22:07:19,323 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:19,323 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:19,324 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:07:19,324 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:19,324 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:19,324 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:19,324 | ^ 2021-07-15T22:07:19,324 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:19,325 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:19,325 | ^~~~~~~~ 2021-07-15T22:07:19,327 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:19,327 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:19,327 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:19,327 | ^ 2021-07-15T22:07:19,328 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:19,328 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:19,328 | ^~~~~~~~ 2021-07-15T22:07:19,343 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:19,344 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:19,344 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:19,344 | ^ 2021-07-15T22:07:19,344 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:19,344 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:19,344 | ^~~~~~~~ 2021-07-15T22:07:19,348 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:19,348 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:19,349 from ./src/formats/MNAformat.cpp:31: 2021-07-15T22:07:19,349 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:19,349 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:19,349 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:19,349 | ^ 2021-07-15T22:07:19,349 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:19,349 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:19,350 | ^~~~~~~~ 2021-07-15T22:07:23,304 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:23,304 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o /tmp/ccurMGyk.s 2021-07-15T22:07:23,310 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:23,683 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:23,684 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:23,684 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/MNAformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:23,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/PQSformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:23,696 Using built-in specs. 2021-07-15T22:07:23,697 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:23,697 Target: arm-linux-gnueabihf 2021-07-15T22:07:23,698 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:23,698 Thread model: posix 2021-07-15T22:07:23,698 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:23,698 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:23,698 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:23,699 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/PQSformat.cpp -quiet -dumpbase PQSformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccAZU70v.s 2021-07-15T22:07:23,712 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:23,712 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:23,713 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:23,713 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:23,713 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:23,713 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:23,714 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:23,714 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:23,714 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:23,714 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:23,714 #include "..." search starts here: 2021-07-15T22:07:23,715 #include <...> search starts here: 2021-07-15T22:07:23,715 /usr/include/eigen3 2021-07-15T22:07:23,715 include 2021-07-15T22:07:23,715 /usr/include/python3.9 2021-07-15T22:07:23,715 /usr/include/c++/10 2021-07-15T22:07:23,716 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:23,716 /usr/include/c++/10/backward 2021-07-15T22:07:23,716 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:23,716 /usr/local/include 2021-07-15T22:07:23,716 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:23,716 /usr/include 2021-07-15T22:07:23,717 End of search list. 2021-07-15T22:07:23,717 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:23,717 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:23,717 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:23,731 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:25,114 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:25,115 from include/openbabel/mol.h:43, 2021-07-15T22:07:25,115 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:25,115 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:07:25,115 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:25,115 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:25,115 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:25,116 | ^ 2021-07-15T22:07:25,116 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:25,116 37 | # define UNUSED(x) x 2021-07-15T22:07:25,116 | ^ 2021-07-15T22:07:25,814 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:25,814 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:25,815 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:07:25,815 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:25,815 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:25,815 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:25,815 | ^ 2021-07-15T22:07:25,815 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:25,816 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:25,816 | ^~~~~~~~ 2021-07-15T22:07:25,818 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:25,818 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:25,818 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:25,818 | ^ 2021-07-15T22:07:25,819 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:25,819 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:25,819 | ^~~~~~~~ 2021-07-15T22:07:25,835 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:25,835 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:25,835 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:25,835 | ^ 2021-07-15T22:07:25,835 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:25,835 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:25,836 | ^~~~~~~~ 2021-07-15T22:07:25,839 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:25,840 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:25,840 from ./src/formats/PQSformat.cpp:16: 2021-07-15T22:07:25,840 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:25,840 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:25,840 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:25,840 | ^ 2021-07-15T22:07:25,840 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:25,841 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:25,841 | ^~~~~~~~ 2021-07-15T22:07:28,503 ./src/formats/PQSformat.cpp: In member function ‘virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:28,504 ./src/formats/PQSformat.cpp:259:49: warning: ‘pFormat’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:28,504 259 | return pFormat->ReadMolecule(&mol,&coordconv); 2021-07-15T22:07:28,504 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:07:29,207 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:29,208 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o /tmp/ccAZU70v.s 2021-07-15T22:07:29,214 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:29,502 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:29,503 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:29,503 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/PQSformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:29,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/abinitformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:29,514 Using built-in specs. 2021-07-15T22:07:29,516 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:29,516 Target: arm-linux-gnueabihf 2021-07-15T22:07:29,516 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:29,516 Thread model: posix 2021-07-15T22:07:29,516 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:29,516 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:29,517 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:29,517 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/abinitformat.cpp -quiet -dumpbase abinitformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccy1NT2L.s 2021-07-15T22:07:29,529 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:29,530 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:29,530 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:29,531 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:29,531 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:29,531 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:29,531 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:29,532 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:29,532 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:29,532 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:29,532 #include "..." search starts here: 2021-07-15T22:07:29,532 #include <...> search starts here: 2021-07-15T22:07:29,533 /usr/include/eigen3 2021-07-15T22:07:29,533 include 2021-07-15T22:07:29,533 /usr/include/python3.9 2021-07-15T22:07:29,533 /usr/include/c++/10 2021-07-15T22:07:29,533 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:29,533 /usr/include/c++/10/backward 2021-07-15T22:07:29,534 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:29,534 /usr/local/include 2021-07-15T22:07:29,534 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:29,534 /usr/include 2021-07-15T22:07:29,534 End of search list. 2021-07-15T22:07:29,534 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:29,535 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:29,535 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:29,549 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:30,919 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:30,919 from include/openbabel/mol.h:43, 2021-07-15T22:07:30,919 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:30,919 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:07:30,919 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:30,920 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:30,920 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:30,920 | ^ 2021-07-15T22:07:30,920 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:30,920 37 | # define UNUSED(x) x 2021-07-15T22:07:30,920 | ^ 2021-07-15T22:07:31,614 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:31,615 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:31,615 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:07:31,615 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:31,615 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:31,615 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:31,615 | ^ 2021-07-15T22:07:31,616 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:31,616 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:31,616 | ^~~~~~~~ 2021-07-15T22:07:31,618 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:31,618 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:31,618 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:31,619 | ^ 2021-07-15T22:07:31,619 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:31,619 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:31,619 | ^~~~~~~~ 2021-07-15T22:07:31,635 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:31,635 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:31,635 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:31,635 | ^ 2021-07-15T22:07:31,635 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:31,635 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:31,636 | ^~~~~~~~ 2021-07-15T22:07:31,639 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:31,640 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:31,640 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:07:31,640 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:31,640 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:31,640 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:31,640 | ^ 2021-07-15T22:07:31,641 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:31,641 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:31,641 | ^~~~~~~~ 2021-07-15T22:07:31,950 ./src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:31,950 ./src/formats/abinitformat.cpp:91:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:07:31,951 91 | double acell[3]; // scale of lattice vectors 2021-07-15T22:07:31,951 | ^~~~~ 2021-07-15T22:07:34,016 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:34,016 from include/openbabel/mol.h:35, 2021-07-15T22:07:34,016 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:34,016 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:07:34,016 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:07:34,017 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:34,017 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:07:34,017 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:34,273 ./src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:34,273 ./src/formats/abinitformat.cpp:218:25: warning: ‘natom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:34,273 218 | for (int j = 0; j < natom; ++j) { 2021-07-15T22:07:34,274 | ~~^~~~~~~ 2021-07-15T22:07:34,283 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:34,283 from include/openbabel/mol.h:35, 2021-07-15T22:07:34,283 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:34,283 from ./src/formats/abinitformat.cpp:16: 2021-07-15T22:07:34,283 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:34,283 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:34,284 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:34,284 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:34,284 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:34,284 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:34,890 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:34,890 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o /tmp/ccy1NT2L.s 2021-07-15T22:07:34,895 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:35,172 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:35,173 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:35,173 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/abinitformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:35,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/acesformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/acesformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:35,184 Using built-in specs. 2021-07-15T22:07:35,185 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:35,185 Target: arm-linux-gnueabihf 2021-07-15T22:07:35,185 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:35,185 Thread model: posix 2021-07-15T22:07:35,185 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:35,185 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:35,186 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:35,186 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/acesformat.cpp -quiet -dumpbase acesformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/acesformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cceOVwz2.s 2021-07-15T22:07:35,196 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:35,197 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:35,197 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:35,197 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:35,197 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:35,197 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:35,197 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:35,198 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:35,198 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:35,198 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:35,198 #include "..." search starts here: 2021-07-15T22:07:35,198 #include <...> search starts here: 2021-07-15T22:07:35,199 /usr/include/eigen3 2021-07-15T22:07:35,199 include 2021-07-15T22:07:35,199 /usr/include/python3.9 2021-07-15T22:07:35,199 /usr/include/c++/10 2021-07-15T22:07:35,199 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:35,199 /usr/include/c++/10/backward 2021-07-15T22:07:35,200 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:35,200 /usr/local/include 2021-07-15T22:07:35,200 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:35,200 /usr/include 2021-07-15T22:07:35,200 End of search list. 2021-07-15T22:07:35,201 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:35,201 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:35,201 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:35,217 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:36,598 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:36,598 from include/openbabel/mol.h:43, 2021-07-15T22:07:36,598 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:36,598 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:07:36,598 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:36,598 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:36,599 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:36,599 | ^ 2021-07-15T22:07:36,599 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:36,599 37 | # define UNUSED(x) x 2021-07-15T22:07:36,599 | ^ 2021-07-15T22:07:37,295 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:37,295 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:37,295 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:07:37,295 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:37,296 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:37,296 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:37,296 | ^ 2021-07-15T22:07:37,296 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:37,296 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:37,296 | ^~~~~~~~ 2021-07-15T22:07:37,299 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:37,299 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:37,299 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:37,299 | ^ 2021-07-15T22:07:37,299 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:37,299 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:37,300 | ^~~~~~~~ 2021-07-15T22:07:37,315 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:37,315 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:37,316 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:37,316 | ^ 2021-07-15T22:07:37,316 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:37,316 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:37,316 | ^~~~~~~~ 2021-07-15T22:07:37,320 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:37,320 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:37,320 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:07:37,321 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:37,321 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:37,321 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:37,321 | ^ 2021-07-15T22:07:37,321 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:37,321 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:37,321 | ^~~~~~~~ 2021-07-15T22:07:40,043 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:40,044 from include/openbabel/mol.h:35, 2021-07-15T22:07:40,044 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:40,044 from ./src/formats/acesformat.cpp:20: 2021-07-15T22:07:40,044 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:07:40,044 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:40,044 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:07:40,045 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,091 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:07:40,092 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:40,847 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::AcesOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:40,847 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,847 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,847 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,847 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,847 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,848 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,848 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,848 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,849 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,849 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,849 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,849 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,849 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,849 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,850 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:40,853 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:40,853 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:40,853 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:41,930 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:41,930 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/acesformat.o /tmp/cceOVwz2.s 2021-07-15T22:07:41,935 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:42,343 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:42,343 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:42,343 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acesformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:42,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/acrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/acrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:42,355 Using built-in specs. 2021-07-15T22:07:42,356 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:42,356 Target: arm-linux-gnueabihf 2021-07-15T22:07:42,356 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:42,356 Thread model: posix 2021-07-15T22:07:42,357 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:42,357 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:42,357 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:42,357 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/acrformat.cpp -quiet -dumpbase acrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/acrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccUIG4Wl.s 2021-07-15T22:07:42,370 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:42,370 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:42,371 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:42,371 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:42,371 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:42,372 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:42,372 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:42,372 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:42,373 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:42,373 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:42,373 #include "..." search starts here: 2021-07-15T22:07:42,373 #include <...> search starts here: 2021-07-15T22:07:42,373 /usr/include/eigen3 2021-07-15T22:07:42,373 include 2021-07-15T22:07:42,373 /usr/include/python3.9 2021-07-15T22:07:42,374 /usr/include/c++/10 2021-07-15T22:07:42,374 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:42,374 /usr/include/c++/10/backward 2021-07-15T22:07:42,374 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:42,374 /usr/local/include 2021-07-15T22:07:42,375 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:42,375 /usr/include 2021-07-15T22:07:42,375 End of search list. 2021-07-15T22:07:42,375 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:42,375 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:42,376 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:42,389 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:43,757 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:43,757 from include/openbabel/mol.h:43, 2021-07-15T22:07:43,757 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:07:43,757 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:43,757 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:43,758 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:43,758 | ^ 2021-07-15T22:07:43,758 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:43,758 37 | # define UNUSED(x) x 2021-07-15T22:07:43,758 | ^ 2021-07-15T22:07:44,450 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:44,450 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:07:44,450 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:44,451 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:44,451 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:44,451 | ^ 2021-07-15T22:07:44,451 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:44,451 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:44,451 | ^~~~~~~~ 2021-07-15T22:07:44,454 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:44,454 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:44,454 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:44,454 | ^ 2021-07-15T22:07:44,454 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:44,455 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:44,455 | ^~~~~~~~ 2021-07-15T22:07:44,470 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:44,470 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:44,471 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:44,471 | ^ 2021-07-15T22:07:44,471 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:44,471 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:44,471 | ^~~~~~~~ 2021-07-15T22:07:44,475 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:44,475 from ./src/formats/acrformat.cpp:23: 2021-07-15T22:07:44,475 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:44,476 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:44,476 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:44,476 | ^ 2021-07-15T22:07:44,476 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:44,476 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:44,476 | ^~~~~~~~ 2021-07-15T22:07:44,762 ./src/formats/acrformat.cpp: In member function ‘virtual int OpenBabel::ACRFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:07:44,762 ./src/formats/acrformat.cpp:67:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:07:44,762 67 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:07:44,762 | ~~~~^ 2021-07-15T22:07:44,762 ./src/formats/acrformat.cpp:67:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:07:44,763 67 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:07:44,763 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:07:44,767 ./src/formats/acrformat.cpp: In member function ‘virtual bool OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:44,767 ./src/formats/acrformat.cpp:113:59: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:07:44,767 113 | } else if (sscanf(buf, "Number of Atoms in Crystal=%d\n", &tmp)) { 2021-07-15T22:07:44,767 | ~^ ~~~~ 2021-07-15T22:07:44,767 | | | 2021-07-15T22:07:44,767 | int* unsigned int* 2021-07-15T22:07:44,768 | %d 2021-07-15T22:07:44,768 ./src/formats/acrformat.cpp:120:59: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:07:44,768 120 | } else if (sscanf(buf, "Number of Links in Crystal=%d\n", &tmp)) { 2021-07-15T22:07:44,768 | ~^ ~~~~ 2021-07-15T22:07:44,768 | | | 2021-07-15T22:07:44,768 | int* unsigned int* 2021-07-15T22:07:44,768 | %d 2021-07-15T22:07:46,374 ./src/formats/acrformat.cpp:137:40: warning: ‘scale’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:46,374 137 | X = atof((char*)vs[6].c_str())/scale; 2021-07-15T22:07:46,374 | ^~~~~ 2021-07-15T22:07:46,374 ./src/formats/acrformat.cpp:159:5: warning: ‘bonds’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:46,374 159 | if ( pmol->NumBonds() != bonds ) { 2021-07-15T22:07:46,375 | ^~ 2021-07-15T22:07:46,375 ./src/formats/acrformat.cpp:163:12: warning: ‘atoms’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:07:46,375 163 | } else if ( pmol->NumAtoms() != atoms ) { 2021-07-15T22:07:46,375 | ^~ 2021-07-15T22:07:47,252 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:47,253 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/acrformat.o /tmp/ccUIG4Wl.s 2021-07-15T22:07:47,260 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:47,526 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:47,526 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:47,527 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/acrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:47,528 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/adfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/adfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:47,538 Using built-in specs. 2021-07-15T22:07:47,539 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:47,539 Target: arm-linux-gnueabihf 2021-07-15T22:07:47,539 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:47,539 Thread model: posix 2021-07-15T22:07:47,539 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:47,539 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:47,539 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:47,540 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/adfformat.cpp -quiet -dumpbase adfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/adfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cccpScgB.s 2021-07-15T22:07:47,553 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:47,553 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:47,554 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:47,555 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:47,556 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:47,556 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:47,556 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:47,556 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:47,556 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:47,557 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:47,557 #include "..." search starts here: 2021-07-15T22:07:47,557 #include <...> search starts here: 2021-07-15T22:07:47,557 /usr/include/eigen3 2021-07-15T22:07:47,557 include 2021-07-15T22:07:47,558 /usr/include/python3.9 2021-07-15T22:07:47,558 /usr/include/c++/10 2021-07-15T22:07:47,558 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:47,558 /usr/include/c++/10/backward 2021-07-15T22:07:47,558 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:47,558 /usr/local/include 2021-07-15T22:07:47,559 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:47,559 /usr/include 2021-07-15T22:07:47,559 End of search list. 2021-07-15T22:07:47,559 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:47,559 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:47,560 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:47,575 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:49,104 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:49,105 from include/openbabel/mol.h:43, 2021-07-15T22:07:49,105 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:49,105 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:07:49,105 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:49,105 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:49,105 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:49,105 | ^ 2021-07-15T22:07:49,106 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:49,106 37 | # define UNUSED(x) x 2021-07-15T22:07:49,106 | ^ 2021-07-15T22:07:49,716 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:49,717 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:49,717 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:07:49,717 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:49,717 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:49,717 862 | {return new OBVibrationData(*this);} 2021-07-15T22:07:49,717 | ^ 2021-07-15T22:07:49,717 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:07:49,718 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:07:49,718 | ^~~~~~~~ 2021-07-15T22:07:49,720 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:49,720 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:49,721 907 | {return new OBDOSData(*this);} 2021-07-15T22:07:49,721 | ^ 2021-07-15T22:07:49,721 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:07:49,721 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:07:49,721 | ^~~~~~~~ 2021-07-15T22:07:49,741 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:49,742 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:49,742 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:07:49,742 | ^ 2021-07-15T22:07:49,742 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:07:49,742 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:07:49,742 | ^~~~~~~~ 2021-07-15T22:07:49,751 In file included from include/openbabel/mol.h:52, 2021-07-15T22:07:49,752 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:49,752 from ./src/formats/adfformat.cpp:35: 2021-07-15T22:07:49,752 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:07:49,752 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:07:49,752 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:07:49,752 | ^ 2021-07-15T22:07:49,752 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:07:49,752 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:07:49,753 | ^~~~~~~~ 2021-07-15T22:07:49,935 ./src/formats/adfformat.cpp: In member function ‘virtual bool OpenBabel::ADFInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:49,935 ./src/formats/adfformat.cpp:274:39: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:07:49,935 274 | virtual bool ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:07:49,935 | ~~~~~~~~^~~ 2021-07-15T22:07:49,935 ./src/formats/adfformat.cpp:274:58: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:07:49,935 274 | virtual bool ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:07:49,936 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:07:49,947 ./src/formats/adfformat.cpp: In member function ‘virtual int OpenBabel::OBT41Format::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:07:49,948 ./src/formats/adfformat.cpp:400:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:07:49,948 400 | virtual int SkipObjects( int n, OBConversion* pConv ) { return 0; } 2021-07-15T22:07:49,948 | ~~~~^ 2021-07-15T22:07:49,948 ./src/formats/adfformat.cpp:400:51: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:07:49,948 400 | virtual int SkipObjects( int n, OBConversion* pConv ) { return 0; } 2021-07-15T22:07:49,948 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:07:49,952 ./src/formats/adfformat.cpp: In member function ‘void OpenBabel::OBT41Format::AddSCFGrids(std::istream&, OpenBabel::OBGridData&)’: 2021-07-15T22:07:49,952 ./src/formats/adfformat.cpp:448:32: warning: unused parameter ‘is’ [-Wunused-parameter] 2021-07-15T22:07:49,952 448 | void AddSCFGrids( istream& is, OBGridData& t41 ) {} 2021-07-15T22:07:49,952 | ~~~~~~~~~^~ 2021-07-15T22:07:49,952 ./src/formats/adfformat.cpp:448:48: warning: unused parameter ‘t41’ [-Wunused-parameter] 2021-07-15T22:07:49,953 448 | void AddSCFGrids( istream& is, OBGridData& t41 ) {} 2021-07-15T22:07:49,953 | ~~~~~~~~~~~~^~~ 2021-07-15T22:07:49,956 ./src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadBinary(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:49,956 ./src/formats/adfformat.cpp:533:39: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:07:49,956 533 | bool OBT41Format::ReadBinary( OBBase* pOb, OBConversion* pConv ) 2021-07-15T22:07:49,956 | ~~~~~~~~^~~ 2021-07-15T22:07:49,956 ./src/formats/adfformat.cpp:533:58: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:07:49,957 533 | bool OBT41Format::ReadBinary( OBBase* pOb, OBConversion* pConv ) 2021-07-15T22:07:49,957 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:07:49,963 ./src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:49,963 ./src/formats/adfformat.cpp:590:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:07:49,963 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,963 | ^~~~~ 2021-07-15T22:07:49,963 ./src/formats/adfformat.cpp:590:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:07:49,964 590 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,964 | ^~~~ 2021-07-15T22:07:49,968 ./src/formats/adfformat.cpp:603:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:07:49,968 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,969 | ^~~~~ 2021-07-15T22:07:49,969 ./src/formats/adfformat.cpp:603:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:07:49,969 603 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,969 | ^~~~ 2021-07-15T22:07:49,985 ./src/formats/adfformat.cpp:625:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:07:49,986 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,986 | ^~~~~ 2021-07-15T22:07:49,986 ./src/formats/adfformat.cpp:625:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:07:49,986 625 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,986 | ^~~~ 2021-07-15T22:07:49,993 ./src/formats/adfformat.cpp:640:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:07:49,993 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,993 | ^~~~~ 2021-07-15T22:07:49,993 ./src/formats/adfformat.cpp:640:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:07:49,993 640 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,993 | ^~~~ 2021-07-15T22:07:49,997 ./src/formats/adfformat.cpp:655:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:07:49,997 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,997 | ^~~~~ 2021-07-15T22:07:49,997 ./src/formats/adfformat.cpp:655:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 2021-07-15T22:07:49,997 655 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; 2021-07-15T22:07:49,997 | ^~~~ 2021-07-15T22:07:55,364 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:07:55,365 from ./src/formats/adfformat.cpp:30: 2021-07-15T22:07:55,365 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::OBT41Format::AtomData}; _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator]’: 2021-07-15T22:07:55,365 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:07:55,365 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:07:55,365 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:55,777 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:07:55,778 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:07:55,778 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:07:55,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:07:57,175 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:57,176 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/adfformat.o /tmp/cccpScgB.s 2021-07-15T22:07:57,182 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:07:57,925 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:07:57,926 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:07:57,926 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/adfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:57,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/alchemyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:07:57,940 Using built-in specs. 2021-07-15T22:07:57,941 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:07:57,942 Target: arm-linux-gnueabihf 2021-07-15T22:07:57,942 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:07:57,942 Thread model: posix 2021-07-15T22:07:57,942 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:07:57,942 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:07:57,943 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:07:57,946 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/alchemyformat.cpp -quiet -dumpbase alchemyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccYMqdFN.s 2021-07-15T22:07:57,958 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:57,959 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:57,959 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:57,960 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:07:57,960 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:07:57,960 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:07:57,961 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:07:57,961 ignoring duplicate directory "/usr/include/" 2021-07-15T22:07:57,961 as it is a non-system directory that duplicates a system directory 2021-07-15T22:07:57,961 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:07:57,962 #include "..." search starts here: 2021-07-15T22:07:57,962 #include <...> search starts here: 2021-07-15T22:07:57,962 /usr/include/eigen3 2021-07-15T22:07:57,962 include 2021-07-15T22:07:57,963 /usr/include/python3.9 2021-07-15T22:07:57,963 /usr/include/c++/10 2021-07-15T22:07:57,963 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:07:57,963 /usr/include/c++/10/backward 2021-07-15T22:07:57,963 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:07:57,964 /usr/local/include 2021-07-15T22:07:57,964 /usr/include/arm-linux-gnueabihf 2021-07-15T22:07:57,964 /usr/include 2021-07-15T22:07:57,964 End of search list. 2021-07-15T22:07:57,965 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:07:57,965 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:07:57,966 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:07:57,982 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:07:59,341 In file included from include/openbabel/atom.h:33, 2021-07-15T22:07:59,342 from include/openbabel/mol.h:43, 2021-07-15T22:07:59,342 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:07:59,342 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:07:59,342 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:07:59,342 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:07:59,342 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:07:59,342 | ^ 2021-07-15T22:07:59,342 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:07:59,343 37 | # define UNUSED(x) x 2021-07-15T22:07:59,343 | ^ 2021-07-15T22:08:00,036 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:00,036 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:00,036 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:08:00,036 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:00,037 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:00,037 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:00,037 | ^ 2021-07-15T22:08:00,037 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:00,037 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:00,037 | ^~~~~~~~ 2021-07-15T22:08:00,041 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:00,041 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:00,041 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:00,042 | ^ 2021-07-15T22:08:00,042 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:00,042 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:00,042 | ^~~~~~~~ 2021-07-15T22:08:00,059 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:00,059 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:00,059 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:00,059 | ^ 2021-07-15T22:08:00,059 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:00,059 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:00,060 | ^~~~~~~~ 2021-07-15T22:08:00,065 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:00,065 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:00,065 from ./src/formats/alchemyformat.cpp:17: 2021-07-15T22:08:00,065 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:00,065 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:00,065 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:00,065 | ^ 2021-07-15T22:08:00,066 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:00,066 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:00,066 | ^~~~~~~~ 2021-07-15T22:08:02,837 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:02,839 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o /tmp/ccYMqdFN.s 2021-07-15T22:08:02,844 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:03,072 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:03,073 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:03,073 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/alchemyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:03,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/amberformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/amberformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:03,084 Using built-in specs. 2021-07-15T22:08:03,086 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:03,086 Target: arm-linux-gnueabihf 2021-07-15T22:08:03,086 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:03,087 Thread model: posix 2021-07-15T22:08:03,087 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:03,087 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:03,088 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:03,091 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/amberformat.cpp -quiet -dumpbase amberformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/amberformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4zkqCh.s 2021-07-15T22:08:03,105 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:03,105 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:03,106 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:03,107 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:03,107 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:03,107 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:03,108 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:03,108 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:03,108 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:03,108 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:03,109 #include "..." search starts here: 2021-07-15T22:08:03,109 #include <...> search starts here: 2021-07-15T22:08:03,109 /usr/include/eigen3 2021-07-15T22:08:03,109 include 2021-07-15T22:08:03,109 /usr/include/python3.9 2021-07-15T22:08:03,110 /usr/include/c++/10 2021-07-15T22:08:03,110 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:03,110 /usr/include/c++/10/backward 2021-07-15T22:08:03,110 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:03,111 /usr/local/include 2021-07-15T22:08:03,111 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:03,111 /usr/include 2021-07-15T22:08:03,111 End of search list. 2021-07-15T22:08:03,113 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:03,113 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:03,121 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:03,133 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:04,494 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:04,494 from include/openbabel/mol.h:43, 2021-07-15T22:08:04,494 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:04,494 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:08:04,494 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:04,494 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:04,495 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:04,495 | ^ 2021-07-15T22:08:04,495 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:04,495 37 | # define UNUSED(x) x 2021-07-15T22:08:04,495 | ^ 2021-07-15T22:08:05,189 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:05,190 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:05,190 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:08:05,190 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:05,190 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:05,190 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:05,190 | ^ 2021-07-15T22:08:05,191 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:05,191 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:05,191 | ^~~~~~~~ 2021-07-15T22:08:05,195 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:05,195 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:05,195 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:05,195 | ^ 2021-07-15T22:08:05,195 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:05,195 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:05,196 | ^~~~~~~~ 2021-07-15T22:08:05,212 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:05,212 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:05,213 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:05,213 | ^ 2021-07-15T22:08:05,213 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:05,213 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:05,213 | ^~~~~~~~ 2021-07-15T22:08:05,218 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:05,218 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:05,218 from ./src/formats/amberformat.cpp:17: 2021-07-15T22:08:05,219 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:05,219 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:05,219 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:05,219 | ^ 2021-07-15T22:08:05,219 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:05,219 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:05,219 | ^~~~~~~~ 2021-07-15T22:08:07,760 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,760 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/amberformat.o /tmp/cc4zkqCh.s 2021-07-15T22:08:07,764 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:07,976 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:07,977 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:07,977 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/amberformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/aoforceformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:07,988 Using built-in specs. 2021-07-15T22:08:07,989 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:07,990 Target: arm-linux-gnueabihf 2021-07-15T22:08:07,990 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:07,990 Thread model: posix 2021-07-15T22:08:07,990 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:07,991 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:07,992 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:07,994 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/aoforceformat.cpp -quiet -dumpbase aoforceformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRvaybu.s 2021-07-15T22:08:08,007 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:08,007 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:08,008 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:08,009 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:08,009 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:08,009 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:08,010 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:08,010 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:08,010 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:08,010 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:08,011 #include "..." search starts here: 2021-07-15T22:08:08,011 #include <...> search starts here: 2021-07-15T22:08:08,011 /usr/include/eigen3 2021-07-15T22:08:08,011 include 2021-07-15T22:08:08,011 /usr/include/python3.9 2021-07-15T22:08:08,012 /usr/include/c++/10 2021-07-15T22:08:08,012 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:08,012 /usr/include/c++/10/backward 2021-07-15T22:08:08,012 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:08,012 /usr/local/include 2021-07-15T22:08:08,013 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:08,013 /usr/include 2021-07-15T22:08:08,013 End of search list. 2021-07-15T22:08:08,014 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:08,015 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:08,015 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:08,031 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:09,391 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:09,391 from include/openbabel/mol.h:43, 2021-07-15T22:08:09,391 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:09,391 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:08:09,392 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:09,392 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:09,392 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:09,392 | ^ 2021-07-15T22:08:09,392 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:09,392 37 | # define UNUSED(x) x 2021-07-15T22:08:09,393 | ^ 2021-07-15T22:08:10,088 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:10,088 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:10,088 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:08:10,088 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,089 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,089 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:10,089 | ^ 2021-07-15T22:08:10,089 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:10,089 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:10,089 | ^~~~~~~~ 2021-07-15T22:08:10,092 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,092 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,092 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:10,092 | ^ 2021-07-15T22:08:10,092 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:10,092 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:10,093 | ^~~~~~~~ 2021-07-15T22:08:10,108 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,108 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,109 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:10,109 | ^ 2021-07-15T22:08:10,109 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:10,109 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:10,109 | ^~~~~~~~ 2021-07-15T22:08:10,113 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:10,113 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:10,113 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:08:10,114 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:10,114 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:10,114 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:10,114 | ^ 2021-07-15T22:08:10,114 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:10,114 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:10,114 | ^~~~~~~~ 2021-07-15T22:08:13,115 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:08:13,116 from include/openbabel/mol.h:35, 2021-07-15T22:08:13,116 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:13,116 from ./src/formats/aoforceformat.cpp:17: 2021-07-15T22:08:13,116 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:08:13,116 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:08:13,116 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:08:13,116 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,163 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:08:13,164 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:08:13,432 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::AoforceFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:13,432 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,432 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,432 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,433 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,433 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,433 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,435 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,435 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,435 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,435 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,435 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,436 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,436 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,436 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,436 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:13,437 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:08:13,437 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:08:13,437 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:08:14,234 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,234 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o /tmp/ccRvaybu.s 2021-07-15T22:08:14,239 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:14,613 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:14,614 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:14,614 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/aoforceformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/asciiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:14,625 Using built-in specs. 2021-07-15T22:08:14,626 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:14,626 Target: arm-linux-gnueabihf 2021-07-15T22:08:14,626 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:14,626 Thread model: posix 2021-07-15T22:08:14,626 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:14,626 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:14,627 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:14,627 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/asciiformat.cpp -quiet -dumpbase asciiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwOfkbM.s 2021-07-15T22:08:14,637 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:14,638 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:14,638 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:14,638 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:14,638 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:14,638 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:14,639 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:14,639 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:14,639 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:14,639 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:14,639 #include "..." search starts here: 2021-07-15T22:08:14,640 #include <...> search starts here: 2021-07-15T22:08:14,640 /usr/include/eigen3 2021-07-15T22:08:14,640 include 2021-07-15T22:08:14,640 /usr/include/python3.9 2021-07-15T22:08:14,640 /usr/include/c++/10 2021-07-15T22:08:14,640 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:14,641 /usr/include/c++/10/backward 2021-07-15T22:08:14,641 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:14,641 /usr/local/include 2021-07-15T22:08:14,641 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:14,641 /usr/include 2021-07-15T22:08:14,642 End of search list. 2021-07-15T22:08:14,642 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:14,642 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:14,642 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:14,659 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:16,035 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:16,035 from include/openbabel/mol.h:43, 2021-07-15T22:08:16,035 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:16,035 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:08:16,035 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:16,035 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:16,036 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:16,036 | ^ 2021-07-15T22:08:16,036 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:16,036 37 | # define UNUSED(x) x 2021-07-15T22:08:16,036 | ^ 2021-07-15T22:08:16,732 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:16,732 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:16,732 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:08:16,732 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:16,732 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:16,732 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:16,732 | ^ 2021-07-15T22:08:16,733 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:16,733 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:16,733 | ^~~~~~~~ 2021-07-15T22:08:16,735 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:16,735 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:16,736 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:16,736 | ^ 2021-07-15T22:08:16,736 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:16,736 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:16,736 | ^~~~~~~~ 2021-07-15T22:08:16,752 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:16,752 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:16,752 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:16,752 | ^ 2021-07-15T22:08:16,753 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:16,753 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:16,753 | ^~~~~~~~ 2021-07-15T22:08:16,757 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:16,757 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:16,757 from ./src/formats/asciiformat.cpp:19: 2021-07-15T22:08:16,757 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:16,757 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:16,757 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:16,758 | ^ 2021-07-15T22:08:16,758 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:16,758 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:16,758 | ^~~~~~~~ 2021-07-15T22:08:17,074 In file included from ./src/formats/asciiformat.cpp:22: 2021-07-15T22:08:17,074 include/openbabel/depict/asciipainter.h: In member function ‘virtual void OpenBabel::ASCIIPainter::SetFontFamily(const string&)’: 2021-07-15T22:08:17,074 include/openbabel/depict/asciipainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:08:17,074 34 | void SetFontFamily(const std::string &fontFamily) {} 2021-07-15T22:08:17,074 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:08:19,418 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:19,419 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o /tmp/ccwOfkbM.s 2021-07-15T22:08:19,424 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:19,668 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:19,668 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:19,668 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/asciiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:19,670 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/balstformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/balstformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:19,679 Using built-in specs. 2021-07-15T22:08:19,680 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:19,680 Target: arm-linux-gnueabihf 2021-07-15T22:08:19,680 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:19,680 Thread model: posix 2021-07-15T22:08:19,680 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:19,680 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:19,681 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:19,681 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/balstformat.cpp -quiet -dumpbase balstformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/balstformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccsott42.s 2021-07-15T22:08:19,695 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:19,695 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:19,695 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:19,695 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:19,696 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:19,696 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:19,696 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:19,696 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:19,696 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:19,697 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:19,697 #include "..." search starts here: 2021-07-15T22:08:19,697 #include <...> search starts here: 2021-07-15T22:08:19,697 /usr/include/eigen3 2021-07-15T22:08:19,697 include 2021-07-15T22:08:19,698 /usr/include/python3.9 2021-07-15T22:08:19,698 /usr/include/c++/10 2021-07-15T22:08:19,698 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:19,698 /usr/include/c++/10/backward 2021-07-15T22:08:19,698 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:19,698 /usr/local/include 2021-07-15T22:08:19,699 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:19,699 /usr/include 2021-07-15T22:08:19,699 End of search list. 2021-07-15T22:08:19,699 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:19,699 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:19,700 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:19,715 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:21,079 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:21,079 from include/openbabel/mol.h:43, 2021-07-15T22:08:21,080 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:21,080 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:08:21,080 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:21,080 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:21,080 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:21,080 | ^ 2021-07-15T22:08:21,080 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:21,081 37 | # define UNUSED(x) x 2021-07-15T22:08:21,081 | ^ 2021-07-15T22:08:21,789 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:21,789 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:21,789 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:08:21,789 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:21,789 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:21,790 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:21,790 | ^ 2021-07-15T22:08:21,790 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:21,790 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:21,790 | ^~~~~~~~ 2021-07-15T22:08:21,793 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:21,793 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:21,793 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:21,793 | ^ 2021-07-15T22:08:21,793 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:21,793 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:21,794 | ^~~~~~~~ 2021-07-15T22:08:21,809 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:21,809 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:21,810 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:21,810 | ^ 2021-07-15T22:08:21,810 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:21,810 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:21,810 | ^~~~~~~~ 2021-07-15T22:08:21,814 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:21,814 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:21,814 from ./src/formats/balstformat.cpp:17: 2021-07-15T22:08:21,814 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:21,815 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:21,815 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:21,815 | ^ 2021-07-15T22:08:21,815 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:21,815 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:21,815 | ^~~~~~~~ 2021-07-15T22:08:24,482 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:24,482 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/balstformat.o /tmp/ccsott42.s 2021-07-15T22:08:24,488 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:24,700 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:24,700 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:24,700 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/balstformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:24,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/bgfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:24,711 Using built-in specs. 2021-07-15T22:08:24,712 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:24,712 Target: arm-linux-gnueabihf 2021-07-15T22:08:24,712 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:24,713 Thread model: posix 2021-07-15T22:08:24,713 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:24,713 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:24,713 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:24,713 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/bgfformat.cpp -quiet -dumpbase bgfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc0a6IXz.s 2021-07-15T22:08:24,724 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:24,724 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:24,725 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:24,725 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:24,725 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:24,725 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:24,725 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:24,725 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:24,725 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:24,726 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:24,726 #include "..." search starts here: 2021-07-15T22:08:24,726 #include <...> search starts here: 2021-07-15T22:08:24,726 /usr/include/eigen3 2021-07-15T22:08:24,726 include 2021-07-15T22:08:24,727 /usr/include/python3.9 2021-07-15T22:08:24,727 /usr/include/c++/10 2021-07-15T22:08:24,727 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:24,727 /usr/include/c++/10/backward 2021-07-15T22:08:24,727 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:24,727 /usr/local/include 2021-07-15T22:08:24,728 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:24,728 /usr/include 2021-07-15T22:08:24,728 End of search list. 2021-07-15T22:08:24,728 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:24,728 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:24,729 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:24,745 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:26,115 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:26,116 from include/openbabel/mol.h:43, 2021-07-15T22:08:26,116 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:26,116 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:08:26,116 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:26,116 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:26,116 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:26,117 | ^ 2021-07-15T22:08:26,117 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:26,117 37 | # define UNUSED(x) x 2021-07-15T22:08:26,117 | ^ 2021-07-15T22:08:26,810 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:26,810 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:26,810 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:08:26,811 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:26,811 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:26,811 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:26,811 | ^ 2021-07-15T22:08:26,811 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:26,812 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:26,812 | ^~~~~~~~ 2021-07-15T22:08:26,814 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:26,814 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:26,814 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:26,814 | ^ 2021-07-15T22:08:26,815 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:26,815 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:26,815 | ^~~~~~~~ 2021-07-15T22:08:26,830 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:26,831 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:26,831 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:26,831 | ^ 2021-07-15T22:08:26,831 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:26,831 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:26,831 | ^~~~~~~~ 2021-07-15T22:08:26,835 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:26,836 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:26,836 from ./src/formats/bgfformat.cpp:17: 2021-07-15T22:08:26,836 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:26,836 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:26,836 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:26,836 | ^ 2021-07-15T22:08:26,836 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:26,837 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:26,837 | ^~~~~~~~ 2021-07-15T22:08:30,292 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:30,293 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o /tmp/cc0a6IXz.s 2021-07-15T22:08:30,299 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:30,609 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:30,610 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:30,610 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/bgfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:30,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/boxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/boxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:30,620 Using built-in specs. 2021-07-15T22:08:30,622 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:30,622 Target: arm-linux-gnueabihf 2021-07-15T22:08:30,622 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:30,622 Thread model: posix 2021-07-15T22:08:30,623 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:30,623 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:30,624 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:30,626 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/boxformat.cpp -quiet -dumpbase boxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/boxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqOQzaO.s 2021-07-15T22:08:30,637 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:30,638 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:30,638 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:30,639 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:30,639 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:30,639 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:30,639 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:30,639 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:30,639 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:30,640 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:30,640 #include "..." search starts here: 2021-07-15T22:08:30,640 #include <...> search starts here: 2021-07-15T22:08:30,640 /usr/include/eigen3 2021-07-15T22:08:30,640 include 2021-07-15T22:08:30,640 /usr/include/python3.9 2021-07-15T22:08:30,641 /usr/include/c++/10 2021-07-15T22:08:30,641 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:30,641 /usr/include/c++/10/backward 2021-07-15T22:08:30,641 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:30,641 /usr/local/include 2021-07-15T22:08:30,641 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:30,642 /usr/include 2021-07-15T22:08:30,642 End of search list. 2021-07-15T22:08:30,642 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:30,642 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:30,642 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:30,657 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:32,014 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:32,014 from include/openbabel/mol.h:43, 2021-07-15T22:08:32,014 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:32,014 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:08:32,015 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:32,015 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:32,015 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:32,015 | ^ 2021-07-15T22:08:32,015 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:32,015 37 | # define UNUSED(x) x 2021-07-15T22:08:32,015 | ^ 2021-07-15T22:08:32,708 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:32,708 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:32,708 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:08:32,708 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:32,708 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:32,708 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:32,708 | ^ 2021-07-15T22:08:32,709 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:32,709 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:32,709 | ^~~~~~~~ 2021-07-15T22:08:32,711 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:32,712 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:32,712 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:32,712 | ^ 2021-07-15T22:08:32,712 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:32,712 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:32,712 | ^~~~~~~~ 2021-07-15T22:08:32,728 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:32,728 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:32,728 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:32,728 | ^ 2021-07-15T22:08:32,728 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:32,729 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:32,729 | ^~~~~~~~ 2021-07-15T22:08:32,733 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:32,733 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:32,733 from ./src/formats/boxformat.cpp:17: 2021-07-15T22:08:32,733 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:32,733 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:32,734 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:32,734 | ^ 2021-07-15T22:08:32,734 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:32,734 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:32,734 | ^~~~~~~~ 2021-07-15T22:08:35,598 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:35,598 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/boxformat.o /tmp/ccqOQzaO.s 2021-07-15T22:08:35,604 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:35,861 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:35,861 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:35,862 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/boxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:35,863 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cacaoformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:35,873 Using built-in specs. 2021-07-15T22:08:35,874 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:35,875 Target: arm-linux-gnueabihf 2021-07-15T22:08:35,875 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:35,875 Thread model: posix 2021-07-15T22:08:35,875 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:35,875 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:35,876 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:35,879 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cacaoformat.cpp -quiet -dumpbase cacaoformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHJ7Yv7.s 2021-07-15T22:08:35,891 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:35,891 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:35,892 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:35,892 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:35,892 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:35,892 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:35,892 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:35,893 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:35,893 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:35,893 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:35,893 #include "..." search starts here: 2021-07-15T22:08:35,893 #include <...> search starts here: 2021-07-15T22:08:35,893 /usr/include/eigen3 2021-07-15T22:08:35,894 include 2021-07-15T22:08:35,894 /usr/include/python3.9 2021-07-15T22:08:35,894 /usr/include/c++/10 2021-07-15T22:08:35,894 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:35,894 /usr/include/c++/10/backward 2021-07-15T22:08:35,894 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:35,894 /usr/local/include 2021-07-15T22:08:35,894 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:35,895 /usr/include 2021-07-15T22:08:35,895 End of search list. 2021-07-15T22:08:35,895 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:35,895 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:35,895 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:35,909 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:37,488 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:37,489 from include/openbabel/mol.h:43, 2021-07-15T22:08:37,489 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:37,489 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:08:37,489 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:37,489 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:37,489 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:37,490 | ^ 2021-07-15T22:08:37,490 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:37,490 37 | # define UNUSED(x) x 2021-07-15T22:08:37,490 | ^ 2021-07-15T22:08:38,183 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:38,183 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:38,183 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:08:38,183 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:38,183 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:38,183 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:38,184 | ^ 2021-07-15T22:08:38,184 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:38,184 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:38,184 | ^~~~~~~~ 2021-07-15T22:08:38,186 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:38,187 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:38,187 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:38,187 | ^ 2021-07-15T22:08:38,187 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:38,187 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:38,187 | ^~~~~~~~ 2021-07-15T22:08:38,203 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:38,203 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:38,203 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:38,203 | ^ 2021-07-15T22:08:38,204 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:38,204 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:38,204 | ^~~~~~~~ 2021-07-15T22:08:38,208 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:38,208 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:38,208 from ./src/formats/cacaoformat.cpp:17: 2021-07-15T22:08:38,208 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:38,208 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:38,208 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:38,209 | ^ 2021-07-15T22:08:38,209 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:38,209 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:38,209 | ^~~~~~~~ 2021-07-15T22:08:41,286 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:41,287 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o /tmp/ccHJ7Yv7.s 2021-07-15T22:08:41,291 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:41,558 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:41,558 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:41,558 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacaoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:41,560 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cacheformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:41,570 Using built-in specs. 2021-07-15T22:08:41,571 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:41,571 Target: arm-linux-gnueabihf 2021-07-15T22:08:41,571 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:41,572 Thread model: posix 2021-07-15T22:08:41,572 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:41,572 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:41,572 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:41,572 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cacheformat.cpp -quiet -dumpbase cacheformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccXamtcl.s 2021-07-15T22:08:41,585 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:41,585 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:41,586 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:41,586 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:41,586 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:41,586 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:41,586 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:41,587 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:41,587 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:41,587 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:41,587 #include "..." search starts here: 2021-07-15T22:08:41,587 #include <...> search starts here: 2021-07-15T22:08:41,588 /usr/include/eigen3 2021-07-15T22:08:41,588 include 2021-07-15T22:08:41,588 /usr/include/python3.9 2021-07-15T22:08:41,588 /usr/include/c++/10 2021-07-15T22:08:41,588 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:41,588 /usr/include/c++/10/backward 2021-07-15T22:08:41,589 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:41,589 /usr/local/include 2021-07-15T22:08:41,589 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:41,589 /usr/include 2021-07-15T22:08:41,589 End of search list. 2021-07-15T22:08:41,589 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:41,590 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:41,590 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:41,606 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:42,979 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:42,979 from include/openbabel/mol.h:43, 2021-07-15T22:08:42,979 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:42,979 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:08:42,979 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:42,980 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:42,980 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:42,980 | ^ 2021-07-15T22:08:42,980 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:42,980 37 | # define UNUSED(x) x 2021-07-15T22:08:42,980 | ^ 2021-07-15T22:08:43,678 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:43,678 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:43,678 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:08:43,678 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:43,679 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:43,679 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:43,679 | ^ 2021-07-15T22:08:43,679 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:43,679 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:43,679 | ^~~~~~~~ 2021-07-15T22:08:43,682 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:43,682 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:43,682 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:43,682 | ^ 2021-07-15T22:08:43,682 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:43,683 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:43,683 | ^~~~~~~~ 2021-07-15T22:08:43,698 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:43,699 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:43,699 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:43,699 | ^ 2021-07-15T22:08:43,699 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:43,699 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:43,699 | ^~~~~~~~ 2021-07-15T22:08:43,703 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:43,704 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:43,704 from ./src/formats/cacheformat.cpp:16: 2021-07-15T22:08:43,704 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:43,704 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:43,704 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:43,704 | ^ 2021-07-15T22:08:43,704 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:43,705 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:43,705 | ^~~~~~~~ 2021-07-15T22:08:46,096 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:46,096 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o /tmp/ccXamtcl.s 2021-07-15T22:08:46,101 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:46,298 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:46,299 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:46,299 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cacheformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:46,300 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/carformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/carformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:46,309 Using built-in specs. 2021-07-15T22:08:46,310 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:46,311 Target: arm-linux-gnueabihf 2021-07-15T22:08:46,311 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:46,311 Thread model: posix 2021-07-15T22:08:46,312 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:46,312 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:46,313 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:46,316 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/carformat.cpp -quiet -dumpbase carformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/carformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHO6lIw.s 2021-07-15T22:08:46,329 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:46,329 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:46,330 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:46,331 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:46,331 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:46,331 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:46,332 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:46,332 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:46,332 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:46,332 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:46,333 #include "..." search starts here: 2021-07-15T22:08:46,333 #include <...> search starts here: 2021-07-15T22:08:46,333 /usr/include/eigen3 2021-07-15T22:08:46,333 include 2021-07-15T22:08:46,333 /usr/include/python3.9 2021-07-15T22:08:46,334 /usr/include/c++/10 2021-07-15T22:08:46,334 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:46,334 /usr/include/c++/10/backward 2021-07-15T22:08:46,334 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:46,335 /usr/local/include 2021-07-15T22:08:46,335 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:46,335 /usr/include 2021-07-15T22:08:46,335 End of search list. 2021-07-15T22:08:46,336 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:46,337 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:46,337 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:46,354 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:47,719 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:47,719 from include/openbabel/mol.h:43, 2021-07-15T22:08:47,719 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:47,719 from ./src/formats/carformat.cpp:18: 2021-07-15T22:08:47,719 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:47,719 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:47,719 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:47,720 | ^ 2021-07-15T22:08:47,720 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:47,720 37 | # define UNUSED(x) x 2021-07-15T22:08:47,720 | ^ 2021-07-15T22:08:48,414 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:48,414 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:48,414 from ./src/formats/carformat.cpp:18: 2021-07-15T22:08:48,414 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,415 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,415 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:48,415 | ^ 2021-07-15T22:08:48,415 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:48,415 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:48,415 | ^~~~~~~~ 2021-07-15T22:08:48,419 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,419 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,419 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:48,419 | ^ 2021-07-15T22:08:48,420 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:48,420 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:48,420 | ^~~~~~~~ 2021-07-15T22:08:48,437 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,437 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,437 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:48,437 | ^ 2021-07-15T22:08:48,437 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:48,438 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:48,438 | ^~~~~~~~ 2021-07-15T22:08:48,443 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:48,443 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:48,443 from ./src/formats/carformat.cpp:18: 2021-07-15T22:08:48,443 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:48,443 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:48,443 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:48,443 | ^ 2021-07-15T22:08:48,444 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:48,444 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:48,444 | ^~~~~~~~ 2021-07-15T22:08:51,208 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:51,209 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/carformat.o /tmp/ccHO6lIw.s 2021-07-15T22:08:51,215 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:51,452 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:51,452 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:51,452 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/carformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:51,454 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/castepformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/castepformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:51,465 Using built-in specs. 2021-07-15T22:08:51,466 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:51,466 Target: arm-linux-gnueabihf 2021-07-15T22:08:51,466 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:51,466 Thread model: posix 2021-07-15T22:08:51,466 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:51,467 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:51,467 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:51,467 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/castepformat.cpp -quiet -dumpbase castepformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/castepformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccyhj54O.s 2021-07-15T22:08:51,481 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:51,481 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:51,482 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:51,483 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:51,483 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:51,484 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:51,484 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:51,484 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:51,484 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:51,484 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:51,485 #include "..." search starts here: 2021-07-15T22:08:51,485 #include <...> search starts here: 2021-07-15T22:08:51,485 /usr/include/eigen3 2021-07-15T22:08:51,485 include 2021-07-15T22:08:51,485 /usr/include/python3.9 2021-07-15T22:08:51,486 /usr/include/c++/10 2021-07-15T22:08:51,486 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:51,486 /usr/include/c++/10/backward 2021-07-15T22:08:51,486 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:51,486 /usr/local/include 2021-07-15T22:08:51,486 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:51,487 /usr/include 2021-07-15T22:08:51,487 End of search list. 2021-07-15T22:08:51,487 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:51,487 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:51,488 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:51,504 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:52,876 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:52,876 from include/openbabel/mol.h:43, 2021-07-15T22:08:52,876 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:52,876 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:08:52,876 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:52,876 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:52,876 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:52,876 | ^ 2021-07-15T22:08:52,877 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:52,877 37 | # define UNUSED(x) x 2021-07-15T22:08:52,877 | ^ 2021-07-15T22:08:53,573 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:53,573 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:53,573 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:08:53,573 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:53,574 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:53,574 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:53,574 | ^ 2021-07-15T22:08:53,574 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:53,574 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:53,574 | ^~~~~~~~ 2021-07-15T22:08:53,578 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:53,578 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:53,578 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:53,578 | ^ 2021-07-15T22:08:53,579 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:53,579 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:53,579 | ^~~~~~~~ 2021-07-15T22:08:53,596 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:53,596 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:53,596 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:53,596 | ^ 2021-07-15T22:08:53,596 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:53,597 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:53,597 | ^~~~~~~~ 2021-07-15T22:08:53,602 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:53,602 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:53,602 from ./src/formats/castepformat.cpp:16: 2021-07-15T22:08:53,602 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:53,602 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:53,602 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:53,603 | ^ 2021-07-15T22:08:53,603 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:53,603 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:53,603 | ^~~~~~~~ 2021-07-15T22:08:53,890 ./src/formats/castepformat.cpp: In member function ‘virtual int OpenBabel::CASTEPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:08:53,890 ./src/formats/castepformat.cpp:50:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:08:53,890 50 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:53,890 | ~~~~^ 2021-07-15T22:08:53,890 ./src/formats/castepformat.cpp:50:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:08:53,890 50 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:08:53,891 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:08:56,042 ./src/formats/castepformat.cpp: In member function ‘virtual bool OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:08:56,043 ./src/formats/castepformat.cpp:187:21: warning: ‘volume’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:08:56,043 187 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; 2021-07-15T22:08:56,043 | ~~~~~~~^~~~~~~~~~ 2021-07-15T22:08:56,043 ./src/formats/castepformat.cpp:187:21: warning: ‘pressure’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:08:56,668 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:56,669 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/castepformat.o /tmp/ccyhj54O.s 2021-07-15T22:08:56,675 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:08:56,948 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:08:56,948 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:08:56,949 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/castepformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:56,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cccformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cccformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:08:56,960 Using built-in specs. 2021-07-15T22:08:56,962 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:08:56,962 Target: arm-linux-gnueabihf 2021-07-15T22:08:56,963 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:08:56,963 Thread model: posix 2021-07-15T22:08:56,963 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:08:56,963 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:08:56,964 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:08:56,967 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cccformat.cpp -quiet -dumpbase cccformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cccformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccex1Ww5.s 2021-07-15T22:08:56,979 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:56,980 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:56,980 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:56,981 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:08:56,981 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:08:56,982 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:08:56,982 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:08:56,982 ignoring duplicate directory "/usr/include/" 2021-07-15T22:08:56,982 as it is a non-system directory that duplicates a system directory 2021-07-15T22:08:56,982 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:08:56,983 #include "..." search starts here: 2021-07-15T22:08:56,983 #include <...> search starts here: 2021-07-15T22:08:56,983 /usr/include/eigen3 2021-07-15T22:08:56,983 include 2021-07-15T22:08:56,983 /usr/include/python3.9 2021-07-15T22:08:56,984 /usr/include/c++/10 2021-07-15T22:08:56,984 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:08:56,984 /usr/include/c++/10/backward 2021-07-15T22:08:56,984 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:08:56,984 /usr/local/include 2021-07-15T22:08:56,985 /usr/include/arm-linux-gnueabihf 2021-07-15T22:08:56,985 /usr/include 2021-07-15T22:08:56,985 End of search list. 2021-07-15T22:08:56,986 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:08:56,986 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:08:56,987 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:08:57,004 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:08:58,366 In file included from include/openbabel/atom.h:33, 2021-07-15T22:08:58,367 from include/openbabel/mol.h:43, 2021-07-15T22:08:58,367 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:58,367 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:08:58,367 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:08:58,367 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:08:58,367 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:08:58,367 | ^ 2021-07-15T22:08:58,368 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:08:58,368 37 | # define UNUSED(x) x 2021-07-15T22:08:58,368 | ^ 2021-07-15T22:08:59,061 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:59,062 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:59,062 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:08:59,062 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:59,062 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:59,062 862 | {return new OBVibrationData(*this);} 2021-07-15T22:08:59,062 | ^ 2021-07-15T22:08:59,062 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:08:59,063 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:08:59,063 | ^~~~~~~~ 2021-07-15T22:08:59,066 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:59,067 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:59,067 907 | {return new OBDOSData(*this);} 2021-07-15T22:08:59,067 | ^ 2021-07-15T22:08:59,067 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:08:59,067 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:08:59,067 | ^~~~~~~~ 2021-07-15T22:08:59,084 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:59,084 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:59,084 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:08:59,084 | ^ 2021-07-15T22:08:59,085 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:08:59,085 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:08:59,085 | ^~~~~~~~ 2021-07-15T22:08:59,090 In file included from include/openbabel/mol.h:52, 2021-07-15T22:08:59,090 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:08:59,090 from ./src/formats/cccformat.cpp:17: 2021-07-15T22:08:59,090 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:08:59,091 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:08:59,091 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:08:59,091 | ^ 2021-07-15T22:08:59,091 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:08:59,091 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:08:59,091 | ^~~~~~~~ 2021-07-15T22:09:01,527 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:01,528 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cccformat.o /tmp/ccex1Ww5.s 2021-07-15T22:09:01,534 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:01,729 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:01,730 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:01,730 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cccformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:01,733 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chem3dformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:01,743 Using built-in specs. 2021-07-15T22:09:01,744 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:01,745 Target: arm-linux-gnueabihf 2021-07-15T22:09:01,745 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:01,745 Thread model: posix 2021-07-15T22:09:01,746 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:01,746 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:01,746 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:01,747 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chem3dformat.cpp -quiet -dumpbase chem3dformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc0vfKQm.s 2021-07-15T22:09:01,760 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:01,760 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:01,760 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:01,761 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:01,761 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:01,763 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:01,764 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:01,764 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:01,764 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:01,764 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:01,764 #include "..." search starts here: 2021-07-15T22:09:01,764 #include <...> search starts here: 2021-07-15T22:09:01,764 /usr/include/eigen3 2021-07-15T22:09:01,765 include 2021-07-15T22:09:01,765 /usr/include/python3.9 2021-07-15T22:09:01,765 /usr/include/c++/10 2021-07-15T22:09:01,765 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:01,765 /usr/include/c++/10/backward 2021-07-15T22:09:01,765 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:01,765 /usr/local/include 2021-07-15T22:09:01,765 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:01,766 /usr/include 2021-07-15T22:09:01,766 End of search list. 2021-07-15T22:09:01,766 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:01,766 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:01,766 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:01,777 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:03,230 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:03,230 from include/openbabel/mol.h:43, 2021-07-15T22:09:03,230 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:03,230 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:09:03,231 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:03,231 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:03,231 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:03,231 | ^ 2021-07-15T22:09:03,231 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:03,231 37 | # define UNUSED(x) x 2021-07-15T22:09:03,231 | ^ 2021-07-15T22:09:03,848 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:03,848 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:03,849 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:09:03,849 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,849 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,849 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:03,849 | ^ 2021-07-15T22:09:03,849 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:03,849 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:03,850 | ^~~~~~~~ 2021-07-15T22:09:03,852 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,852 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,852 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:03,852 | ^ 2021-07-15T22:09:03,853 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:03,853 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:03,853 | ^~~~~~~~ 2021-07-15T22:09:03,868 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,869 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,869 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:03,869 | ^ 2021-07-15T22:09:03,869 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:03,869 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:03,869 | ^~~~~~~~ 2021-07-15T22:09:03,873 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:03,874 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:03,874 from ./src/formats/chem3dformat.cpp:18: 2021-07-15T22:09:03,874 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:03,874 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:03,874 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:03,874 | ^ 2021-07-15T22:09:03,874 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:03,875 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:03,875 | ^~~~~~~~ 2021-07-15T22:09:06,095 ./src/formats/chem3dformat.cpp: In static member function ‘static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)’: 2021-07-15T22:09:06,096 ./src/formats/chem3dformat.cpp:298:52: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=] 2021-07-15T22:09:06,096 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); 2021-07-15T22:09:06,096 | ^~ 2021-07-15T22:09:06,096 ./src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461] 2021-07-15T22:09:06,096 298 | snprintf(type_name, sizeof(type_num), "%d",type_num); 2021-07-15T22:09:06,096 | ^~~~ 2021-07-15T22:09:06,097 In file included from /usr/include/stdio.h:867, 2021-07-15T22:09:06,097 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:09:06,097 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:09:06,097 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:09:06,097 from /usr/include/c++/10/string:55, 2021-07-15T22:09:06,097 from /usr/include/c++/10/bits/locale_classes.h:40, 2021-07-15T22:09:06,097 from /usr/include/c++/10/bits/ios_base.h:41, 2021-07-15T22:09:06,097 from /usr/include/c++/10/ios:42, 2021-07-15T22:09:06,098 from /usr/include/c++/10/ostream:38, 2021-07-15T22:09:06,098 from include/openbabel/math/matrix3x3.h:24, 2021-07-15T22:09:06,098 from ./src/formats/chem3dformat.cpp:17: 2021-07-15T22:09:06,098 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 4 2021-07-15T22:09:06,098 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:09:06,098 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:06,098 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:09:06,098 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:06,657 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:06,658 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o /tmp/cc0vfKQm.s 2021-07-15T22:09:06,666 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:06,902 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:06,903 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:06,903 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chem3dformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:06,905 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemdrawcdx.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:06,913 Using built-in specs. 2021-07-15T22:09:06,915 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:06,915 Target: arm-linux-gnueabihf 2021-07-15T22:09:06,916 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:06,916 Thread model: posix 2021-07-15T22:09:06,916 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:06,916 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:06,917 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:06,920 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemdrawcdx.cpp -quiet -dumpbase chemdrawcdx.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccCrq0SK.s 2021-07-15T22:09:06,933 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:06,934 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:06,934 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:06,935 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:06,935 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:06,936 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:06,936 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:06,936 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:06,936 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:06,937 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:06,937 #include "..." search starts here: 2021-07-15T22:09:06,937 #include <...> search starts here: 2021-07-15T22:09:06,937 /usr/include/eigen3 2021-07-15T22:09:06,937 include 2021-07-15T22:09:06,938 /usr/include/python3.9 2021-07-15T22:09:06,938 /usr/include/c++/10 2021-07-15T22:09:06,938 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:06,938 /usr/include/c++/10/backward 2021-07-15T22:09:06,938 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:06,939 /usr/local/include 2021-07-15T22:09:06,939 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:06,939 /usr/include 2021-07-15T22:09:06,939 End of search list. 2021-07-15T22:09:06,941 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:06,941 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:06,941 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:06,960 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:08,339 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:08,340 from include/openbabel/mol.h:43, 2021-07-15T22:09:08,340 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:08,340 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:09:08,340 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:08,340 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:08,340 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:08,340 | ^ 2021-07-15T22:09:08,340 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:08,340 37 | # define UNUSED(x) x 2021-07-15T22:09:08,341 | ^ 2021-07-15T22:09:09,034 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:09,034 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:09,034 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:09:09,034 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:09,034 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:09,034 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:09,034 | ^ 2021-07-15T22:09:09,035 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:09,035 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:09,035 | ^~~~~~~~ 2021-07-15T22:09:09,039 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:09,039 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:09,039 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:09,039 | ^ 2021-07-15T22:09:09,039 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:09,040 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:09,040 | ^~~~~~~~ 2021-07-15T22:09:09,056 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:09,057 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:09,057 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:09,057 | ^ 2021-07-15T22:09:09,057 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:09,057 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:09,058 | ^~~~~~~~ 2021-07-15T22:09:09,062 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:09,063 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:09,063 from ./src/formats/chemdrawcdx.cpp:17: 2021-07-15T22:09:09,063 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:09,063 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:09,063 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:09,063 | ^ 2021-07-15T22:09:09,063 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:09,064 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:09,064 | ^~~~~~~~ 2021-07-15T22:09:09,742 ./src/formats/chemdrawcdx.cpp: In member function ‘virtual bool OpenBabel::ChemDrawBinaryXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:09,743 ./src/formats/chemdrawcdx.cpp:205:50: warning: unused parameter ‘pOb’ [-Wunused-parameter] 2021-07-15T22:09:09,743 205 | bool ChemDrawBinaryXFormat::ReadMolecule(OBBase* pOb, OBConversion* pConv) 2021-07-15T22:09:09,743 | ~~~~~~~~^~~ 2021-07-15T22:09:09,787 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoReaction(OpenBabel::CDXReader&, OpenBabel::OBReaction*)’: 2021-07-15T22:09:09,787 ./src/formats/chemdrawcdx.cpp:331:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:09:09,787 331 | for(unsigned i=0;iNumAtoms();++idx) 2021-07-15T22:09:09,871 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T22:09:09,877 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: 2021-07-15T22:09:09,877 ./src/formats/chemdrawcdx.cpp:454:27: warning: variable ‘hasElement’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:09:09,877 454 | bool isAlias=false, hasElement=false; 2021-07-15T22:09:09,877 | ^~~~~~~~~~ 2021-07-15T22:09:09,882 ./src/formats/chemdrawcdx.cpp:446:84: warning: unused parameter ‘updown’ [-Wunused-parameter] 2021-07-15T22:09:09,883 446 | map& atommap, map& updown) 2021-07-15T22:09:09,883 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:09:11,686 ./src/formats/chemdrawcdx.cpp: In member function ‘std::string OpenBabel::ChemDrawBinaryXFormat::DoText(OpenBabel::CDXReader&)’: 2021-07-15T22:09:11,686 ./src/formats/chemdrawcdx.cpp:625:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:09:11,686 625 | ss >> text; 2021-07-15T22:09:11,686 | ^~~~ 2021-07-15T22:09:11,686 ./src/formats/chemdrawcdx.cpp:626:5: note: here 2021-07-15T22:09:11,687 626 | default: 2021-07-15T22:09:11,687 | ^~~~~~~ 2021-07-15T22:09:17,281 ./src/formats/chemdrawcdx.cpp: In member function ‘bool OpenBabel::ChemDrawBinaryXFormat::DoFragmentImpl(OpenBabel::CDXReader&, OpenBabel::OBMol*, std::map&, std::map&)’: 2021-07-15T22:09:17,281 ./src/formats/chemdrawcdx.cpp:591:28: warning: ‘endIdx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:09:17,281 591 | if(!order || !bgnIdx || !endIdx) 2021-07-15T22:09:17,281 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:09:17,282 ./src/formats/chemdrawcdx.cpp:591:17: warning: ‘bgnIdx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:09:17,282 591 | if(!order || !bgnIdx || !endIdx) 2021-07-15T22:09:17,282 | ~~~~~~~^~~~~~~~~~ 2021-07-15T22:09:18,721 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:18,722 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o /tmp/ccCrq0SK.s 2021-07-15T22:09:18,726 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:19,639 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:19,639 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:19,639 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawcdx.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:19,644 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemdrawct.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:19,656 Using built-in specs. 2021-07-15T22:09:19,657 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:19,658 Target: arm-linux-gnueabihf 2021-07-15T22:09:19,658 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:19,658 Thread model: posix 2021-07-15T22:09:19,658 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:19,659 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:19,660 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:19,663 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemdrawct.cpp -quiet -dumpbase chemdrawct.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccKsAfwZ.s 2021-07-15T22:09:19,675 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:19,676 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:19,676 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:19,677 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:19,678 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:19,678 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:19,678 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:19,678 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:19,678 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:19,679 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:19,679 #include "..." search starts here: 2021-07-15T22:09:19,679 #include <...> search starts here: 2021-07-15T22:09:19,679 /usr/include/eigen3 2021-07-15T22:09:19,679 include 2021-07-15T22:09:19,680 /usr/include/python3.9 2021-07-15T22:09:19,680 /usr/include/c++/10 2021-07-15T22:09:19,680 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:19,680 /usr/include/c++/10/backward 2021-07-15T22:09:19,680 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:19,681 /usr/local/include 2021-07-15T22:09:19,681 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:19,681 /usr/include 2021-07-15T22:09:19,681 End of search list. 2021-07-15T22:09:19,682 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:19,683 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:19,683 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:19,698 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:21,062 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:21,063 from include/openbabel/mol.h:43, 2021-07-15T22:09:21,063 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:21,063 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:09:21,063 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:21,063 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:21,063 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:21,063 | ^ 2021-07-15T22:09:21,063 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:21,064 37 | # define UNUSED(x) x 2021-07-15T22:09:21,064 | ^ 2021-07-15T22:09:21,757 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:21,757 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:21,757 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:09:21,757 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:21,757 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:21,757 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:21,758 | ^ 2021-07-15T22:09:21,758 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:21,758 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:21,758 | ^~~~~~~~ 2021-07-15T22:09:21,762 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:21,762 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:21,762 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:21,762 | ^ 2021-07-15T22:09:21,763 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:21,763 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:21,763 | ^~~~~~~~ 2021-07-15T22:09:21,779 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:21,780 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:21,780 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:21,780 | ^ 2021-07-15T22:09:21,780 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:21,780 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:21,780 | ^~~~~~~~ 2021-07-15T22:09:21,785 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:21,786 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:21,786 from ./src/formats/chemdrawct.cpp:16: 2021-07-15T22:09:21,786 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:21,786 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:21,786 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:21,786 | ^ 2021-07-15T22:09:21,786 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:21,787 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:21,787 | ^~~~~~~~ 2021-07-15T22:09:22,083 ./src/formats/chemdrawct.cpp: In member function ‘virtual bool OpenBabel::ChemDrawFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:09:22,083 ./src/formats/chemdrawct.cpp:130:22: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:09:22,083 130 | sscanf(buffer," %d %d", &natoms, &nbonds); 2021-07-15T22:09:22,083 | ~^ ~~~~~~~ 2021-07-15T22:09:22,083 | | | 2021-07-15T22:09:22,084 | int* unsigned int* 2021-07-15T22:09:22,084 | %d 2021-07-15T22:09:22,084 ./src/formats/chemdrawct.cpp:130:25: warning: format ‘%d’ expects argument of type ‘int*’, but argument 4 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:09:22,084 130 | sscanf(buffer," %d %d", &natoms, &nbonds); 2021-07-15T22:09:22,084 | ~^ ~~~~~~~ 2021-07-15T22:09:22,084 | | | 2021-07-15T22:09:22,085 | int* unsigned int* 2021-07-15T22:09:22,085 | %d 2021-07-15T22:09:22,086 ./src/formats/chemdrawct.cpp:153:32: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:09:22,087 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:09:22,087 | ~^ ~~~~ 2021-07-15T22:09:22,087 | | | 2021-07-15T22:09:22,087 | int* unsigned int* 2021-07-15T22:09:22,087 | %d 2021-07-15T22:09:22,087 ./src/formats/chemdrawct.cpp:153:34: warning: format ‘%d’ expects argument of type ‘int*’, but argument 4 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:09:22,088 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:09:22,088 | ~^ ~~~~ 2021-07-15T22:09:22,088 | | | 2021-07-15T22:09:22,088 | int* unsigned int* 2021-07-15T22:09:22,088 | %d 2021-07-15T22:09:22,088 ./src/formats/chemdrawct.cpp:153:36: warning: format ‘%d’ expects argument of type ‘int*’, but argument 5 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:09:22,088 153 | if (!sscanf(buffer,"%d%d%d%*d",&bgn,&end,&order)) return (false); 2021-07-15T22:09:22,089 | ~^ ~~~~~~ 2021-07-15T22:09:22,089 | | | 2021-07-15T22:09:22,089 | int* unsigned int* 2021-07-15T22:09:22,089 | %d 2021-07-15T22:09:24,337 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:24,337 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o /tmp/ccKsAfwZ.s 2021-07-15T22:09:24,343 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:24,554 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:24,554 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:24,554 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemdrawct.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:24,556 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemkinformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:24,565 Using built-in specs. 2021-07-15T22:09:24,566 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:24,567 Target: arm-linux-gnueabihf 2021-07-15T22:09:24,567 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:24,567 Thread model: posix 2021-07-15T22:09:24,567 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:24,567 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:24,568 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:24,571 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemkinformat.cpp -quiet -dumpbase chemkinformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccBuhJ4d.s 2021-07-15T22:09:24,583 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:24,583 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:24,583 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:24,583 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:24,584 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:24,584 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:24,584 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:24,584 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:24,584 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:24,584 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:24,585 #include "..." search starts here: 2021-07-15T22:09:24,585 #include <...> search starts here: 2021-07-15T22:09:24,585 /usr/include/eigen3 2021-07-15T22:09:24,585 include 2021-07-15T22:09:24,585 /usr/include/python3.9 2021-07-15T22:09:24,585 /usr/include/c++/10 2021-07-15T22:09:24,585 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:24,586 /usr/include/c++/10/backward 2021-07-15T22:09:24,586 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:24,586 /usr/local/include 2021-07-15T22:09:24,586 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:24,586 /usr/include 2021-07-15T22:09:24,586 End of search list. 2021-07-15T22:09:24,586 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:24,587 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:24,587 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:24,601 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:26,119 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:26,119 from include/openbabel/mol.h:43, 2021-07-15T22:09:26,119 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:09:26,119 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:26,120 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:26,120 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:26,120 | ^ 2021-07-15T22:09:26,120 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:26,120 37 | # define UNUSED(x) x 2021-07-15T22:09:26,120 | ^ 2021-07-15T22:09:26,818 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:26,819 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:09:26,819 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:26,819 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:26,819 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:26,819 | ^ 2021-07-15T22:09:26,819 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:26,820 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:26,820 | ^~~~~~~~ 2021-07-15T22:09:26,822 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:26,822 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:26,823 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:26,823 | ^ 2021-07-15T22:09:26,823 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:26,823 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:26,823 | ^~~~~~~~ 2021-07-15T22:09:26,839 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:26,839 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:26,839 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:26,839 | ^ 2021-07-15T22:09:26,839 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:26,840 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:26,840 | ^~~~~~~~ 2021-07-15T22:09:26,843 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:26,844 from ./src/formats/chemkinformat.cpp:25: 2021-07-15T22:09:26,844 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:26,844 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:26,844 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:26,844 | ^ 2021-07-15T22:09:26,844 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:26,845 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:26,845 | ^~~~~~~~ 2021-07-15T22:09:27,265 In file included from ./src/formats/chemkinformat.cpp:29: 2021-07-15T22:09:27,265 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBRateData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:27,265 include/openbabel/kinetics.h:44:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:09:27,265 44 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBRateData(*this);} 2021-07-15T22:09:27,265 | ~~~~~~~~^~~~~~ 2021-07-15T22:09:27,283 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBNasaThermoData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:27,284 include/openbabel/kinetics.h:144:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:09:27,284 144 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBNasaThermoData(*this);} 2021-07-15T22:09:27,284 | ~~~~~~~~^~~~~~ 2021-07-15T22:09:27,387 ./src/formats/chemkinformat.cpp: In member function ‘bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)’: 2021-07-15T22:09:27,387 ./src/formats/chemkinformat.cpp:634:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:09:27,388 634 | for(int i=0;iReactionType) 2021-07-15T22:09:27,490 | ^ 2021-07-15T22:09:27,490 ./src/formats/chemkinformat.cpp:905:11: warning: enumeration value ‘THREEBODY’ not handled in switch [-Wswitch] 2021-07-15T22:09:27,523 ./src/formats/chemkinformat.cpp:984:11: warning: enumeration value ‘ARRHENIUS’ not handled in switch [-Wswitch] 2021-07-15T22:09:27,523 984 | switch(pRD->ReactionType) 2021-07-15T22:09:27,524 | ^ 2021-07-15T22:09:27,524 ./src/formats/chemkinformat.cpp:984:11: warning: enumeration value ‘SRI’ not handled in switch [-Wswitch] 2021-07-15T22:09:40,302 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:40,303 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o /tmp/ccBuhJ4d.s 2021-07-15T22:09:40,309 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:41,799 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:41,799 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:41,799 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemkinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:41,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/chemtoolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:41,814 Using built-in specs. 2021-07-15T22:09:41,816 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:41,816 Target: arm-linux-gnueabihf 2021-07-15T22:09:41,816 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:41,816 Thread model: posix 2021-07-15T22:09:41,817 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:41,817 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:41,817 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:41,817 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/chemtoolformat.cpp -quiet -dumpbase chemtoolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccy9JuWs.s 2021-07-15T22:09:41,830 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:41,830 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:41,831 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:41,831 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:41,831 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:41,832 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:41,832 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:41,833 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:41,833 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:41,833 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:41,833 #include "..." search starts here: 2021-07-15T22:09:41,833 #include <...> search starts here: 2021-07-15T22:09:41,833 /usr/include/eigen3 2021-07-15T22:09:41,833 include 2021-07-15T22:09:41,834 /usr/include/python3.9 2021-07-15T22:09:41,834 /usr/include/c++/10 2021-07-15T22:09:41,834 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:41,834 /usr/include/c++/10/backward 2021-07-15T22:09:41,834 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:41,834 /usr/local/include 2021-07-15T22:09:41,835 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:41,835 /usr/include 2021-07-15T22:09:41,835 End of search list. 2021-07-15T22:09:41,835 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:41,835 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:41,836 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:41,850 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:43,461 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:43,461 from include/openbabel/mol.h:43, 2021-07-15T22:09:43,462 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:43,462 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:09:43,462 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:43,462 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:43,462 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:43,462 | ^ 2021-07-15T22:09:43,462 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:43,463 37 | # define UNUSED(x) x 2021-07-15T22:09:43,463 | ^ 2021-07-15T22:09:44,157 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:44,157 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:44,157 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:09:44,157 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:44,157 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:44,158 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:44,158 | ^ 2021-07-15T22:09:44,158 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:44,158 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:44,158 | ^~~~~~~~ 2021-07-15T22:09:44,160 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:44,161 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:44,161 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:44,161 | ^ 2021-07-15T22:09:44,161 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:44,161 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:44,162 | ^~~~~~~~ 2021-07-15T22:09:44,177 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:44,177 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:44,177 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:44,178 | ^ 2021-07-15T22:09:44,178 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:44,178 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:44,178 | ^~~~~~~~ 2021-07-15T22:09:44,182 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:44,182 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:44,182 from ./src/formats/chemtoolformat.cpp:19: 2021-07-15T22:09:44,182 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:44,183 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:44,183 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:44,183 | ^ 2021-07-15T22:09:44,183 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:44,183 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:44,183 | ^~~~~~~~ 2021-07-15T22:09:46,617 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:46,617 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o /tmp/ccy9JuWs.s 2021-07-15T22:09:46,622 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:09:46,823 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:09:46,824 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:09:46,824 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/chemtoolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:46,825 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cifformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cifformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:09:46,834 Using built-in specs. 2021-07-15T22:09:46,835 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:09:46,835 Target: arm-linux-gnueabihf 2021-07-15T22:09:46,835 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:09:46,835 Thread model: posix 2021-07-15T22:09:46,835 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:09:46,835 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:09:46,835 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:09:46,836 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cifformat.cpp -quiet -dumpbase cifformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cifformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccF9hJgH.s 2021-07-15T22:09:46,846 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:46,846 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:46,846 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:46,846 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:09:46,847 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:09:46,847 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:09:46,847 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:09:46,847 ignoring duplicate directory "/usr/include/" 2021-07-15T22:09:46,847 as it is a non-system directory that duplicates a system directory 2021-07-15T22:09:46,847 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:09:46,848 #include "..." search starts here: 2021-07-15T22:09:46,848 #include <...> search starts here: 2021-07-15T22:09:46,848 /usr/include/eigen3 2021-07-15T22:09:46,848 include 2021-07-15T22:09:46,848 /usr/include/python3.9 2021-07-15T22:09:46,849 /usr/include/c++/10 2021-07-15T22:09:46,849 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:09:46,849 /usr/include/c++/10/backward 2021-07-15T22:09:46,849 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:09:46,849 /usr/local/include 2021-07-15T22:09:46,849 /usr/include/arm-linux-gnueabihf 2021-07-15T22:09:46,849 /usr/include 2021-07-15T22:09:46,850 End of search list. 2021-07-15T22:09:46,850 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:09:46,850 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:09:46,850 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:09:46,865 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:09:48,234 In file included from include/openbabel/atom.h:33, 2021-07-15T22:09:48,235 from include/openbabel/mol.h:43, 2021-07-15T22:09:48,235 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:48,235 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:09:48,235 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:09:48,235 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:09:48,235 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:09:48,235 | ^ 2021-07-15T22:09:48,236 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:09:48,236 37 | # define UNUSED(x) x 2021-07-15T22:09:48,236 | ^ 2021-07-15T22:09:48,931 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:48,931 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:48,931 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:09:48,931 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:48,931 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:48,932 862 | {return new OBVibrationData(*this);} 2021-07-15T22:09:48,932 | ^ 2021-07-15T22:09:48,932 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:09:48,932 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:09:48,932 | ^~~~~~~~ 2021-07-15T22:09:48,935 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:48,935 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:48,935 907 | {return new OBDOSData(*this);} 2021-07-15T22:09:48,935 | ^ 2021-07-15T22:09:48,935 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:09:48,935 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:09:48,936 | ^~~~~~~~ 2021-07-15T22:09:48,951 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:48,951 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:48,951 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:09:48,952 | ^ 2021-07-15T22:09:48,952 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:09:48,952 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:09:48,952 | ^~~~~~~~ 2021-07-15T22:09:48,956 In file included from include/openbabel/mol.h:52, 2021-07-15T22:09:48,956 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:09:48,956 from ./src/formats/cifformat.cpp:20: 2021-07-15T22:09:48,956 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:09:48,956 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:09:48,957 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:09:48,957 | ^ 2021-07-15T22:09:48,957 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:09:48,957 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:09:48,957 | ^~~~~~~~ 2021-07-15T22:09:49,608 ./src/formats/cifformat.cpp: In member function ‘void OpenBabel::CIFData::CalcMatrices()’: 2021-07-15T22:09:49,608 ./src/formats/cifformat.cpp:900:11: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:09:49,608 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:09:49,609 | ^~ 2021-07-15T22:09:49,609 ./src/formats/cifformat.cpp:900:14: warning: variable ‘bb’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:09:49,609 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:09:49,609 | ^~ 2021-07-15T22:09:49,609 ./src/formats/cifformat.cpp:900:27: warning: variable ‘betaa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:09:49,609 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:09:49,609 | ^~~~~ 2021-07-15T22:09:49,609 ./src/formats/cifformat.cpp:900:33: warning: variable ‘gammaa’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:09:49,610 900 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters 2021-07-15T22:09:49,610 | ^~~~~~ 2021-07-15T22:10:06,103 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:06,104 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cifformat.o /tmp/ccF9hJgH.s 2021-07-15T22:10:06,109 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:08,059 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:08,060 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:08,060 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:08,067 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/confabreport.cpp -o build/temp.linux-armv7l-3.9/./src/formats/confabreport.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:08,076 Using built-in specs. 2021-07-15T22:10:08,077 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:08,077 Target: arm-linux-gnueabihf 2021-07-15T22:10:08,077 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:08,077 Thread model: posix 2021-07-15T22:10:08,077 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:08,078 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:08,078 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:08,078 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/confabreport.cpp -quiet -dumpbase confabreport.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/confabreport.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwhpNZh.s 2021-07-15T22:10:08,090 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:08,090 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:08,091 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:08,092 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:08,092 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:08,092 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:08,093 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:08,093 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:08,093 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:08,093 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:08,093 #include "..." search starts here: 2021-07-15T22:10:08,094 #include <...> search starts here: 2021-07-15T22:10:08,094 /usr/include/eigen3 2021-07-15T22:10:08,094 include 2021-07-15T22:10:08,094 /usr/include/python3.9 2021-07-15T22:10:08,094 /usr/include/c++/10 2021-07-15T22:10:08,094 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:08,095 /usr/include/c++/10/backward 2021-07-15T22:10:08,095 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:08,095 /usr/local/include 2021-07-15T22:10:08,095 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:08,095 /usr/include 2021-07-15T22:10:08,095 End of search list. 2021-07-15T22:10:08,096 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:08,096 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:08,096 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:08,113 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:09,628 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:09,629 from include/openbabel/mol.h:43, 2021-07-15T22:10:09,629 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:09,629 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:09,629 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:09,629 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:09,629 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:09,630 | ^ 2021-07-15T22:10:09,630 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:09,630 37 | # define UNUSED(x) x 2021-07-15T22:10:09,630 | ^ 2021-07-15T22:10:10,326 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:10,327 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:10,327 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:10,327 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:10,327 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:10,327 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:10,327 | ^ 2021-07-15T22:10:10,328 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:10,328 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:10,328 | ^~~~~~~~ 2021-07-15T22:10:10,330 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:10,330 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:10,331 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:10,331 | ^ 2021-07-15T22:10:10,331 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:10,331 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:10,331 | ^~~~~~~~ 2021-07-15T22:10:10,347 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:10,347 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:10,347 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:10,347 | ^ 2021-07-15T22:10:10,347 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:10,348 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:10,348 | ^~~~~~~~ 2021-07-15T22:10:10,351 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:10,352 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:10,352 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:10,352 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:10,352 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:10,352 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:10,352 | ^ 2021-07-15T22:10:10,353 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:10,353 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:10,353 | ^~~~~~~~ 2021-07-15T22:10:11,620 ./src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: 2021-07-15T22:10:11,620 ./src/formats/confabreport.cpp:128:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:10:11,620 128 | for (int i=1; i < binvals.size(); i++) 2021-07-15T22:10:11,620 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:10:11,622 ./src/formats/confabreport.cpp:133:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:10:11,623 133 | for (int i=1; i < cumbins.size(); i++) 2021-07-15T22:10:11,623 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:10:13,381 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-15T22:10:13,381 from /usr/include/c++/10/algorithm:62, 2021-07-15T22:10:13,381 from include/openbabel/ring.h:24, 2021-07-15T22:10:13,382 from include/openbabel/mol.h:51, 2021-07-15T22:10:13,382 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:13,382 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:13,382 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:10:13,382 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,382 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-15T22:10:13,382 | ^~~~~~~~~~~~~ 2021-07-15T22:10:13,418 In file included from /usr/include/c++/10/algorithm:62, 2021-07-15T22:10:13,418 from include/openbabel/ring.h:24, 2021-07-15T22:10:13,418 from include/openbabel/mol.h:51, 2021-07-15T22:10:13,418 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:13,419 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:13,419 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:10:13,419 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,419 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-15T22:10:13,419 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:10:13,419 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,419 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,463 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-15T22:10:13,463 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,464 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-15T22:10:13,464 | ^~~~~~~~~~~~~~~~ 2021-07-15T22:10:13,464 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,464 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:13,464 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-15T22:10:13,464 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,068 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: 2021-07-15T22:10:14,069 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:14,069 1974 | std::__introsort_loop(__first, __last, 2021-07-15T22:10:14,069 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,069 1975 | std::__lg(__last - __first) * 2, 2021-07-15T22:10:14,069 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,069 1976 | __comp); 2021-07-15T22:10:14,070 | ~~~~~~~ 2021-07-15T22:10:14,070 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:14,070 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-15T22:10:14,070 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,070 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:14,070 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-15T22:10:14,071 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,188 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:14,188 from include/openbabel/mol.h:35, 2021-07-15T22:10:14,189 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:14,189 from ./src/formats/confabreport.cpp:34: 2021-07-15T22:10:14,189 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:14,189 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:14,189 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:14,189 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,284 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::ConfabReport::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:14,284 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:14,284 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:14,285 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:14,960 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:14,961 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/confabreport.o /tmp/ccwhpNZh.s 2021-07-15T22:10:14,966 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:15,320 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:15,320 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:15,320 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/confabreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:15,323 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/copyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/copyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:15,331 Using built-in specs. 2021-07-15T22:10:15,332 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:15,332 Target: arm-linux-gnueabihf 2021-07-15T22:10:15,333 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:15,333 Thread model: posix 2021-07-15T22:10:15,333 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:15,333 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:15,333 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:15,333 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/copyformat.cpp -quiet -dumpbase copyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/copyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cch1OICv.s 2021-07-15T22:10:15,344 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:15,345 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:15,345 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:15,345 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:15,345 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:15,346 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:15,346 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:15,346 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:15,346 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:15,346 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:15,347 #include "..." search starts here: 2021-07-15T22:10:15,347 #include <...> search starts here: 2021-07-15T22:10:15,347 /usr/include/eigen3 2021-07-15T22:10:15,347 include 2021-07-15T22:10:15,347 /usr/include/python3.9 2021-07-15T22:10:15,347 /usr/include/c++/10 2021-07-15T22:10:15,347 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:15,348 /usr/include/c++/10/backward 2021-07-15T22:10:15,348 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:15,348 /usr/local/include 2021-07-15T22:10:15,348 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:15,348 /usr/include 2021-07-15T22:10:15,348 End of search list. 2021-07-15T22:10:15,349 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:15,349 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:15,349 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:15,364 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:17,402 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:17,402 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/copyformat.o /tmp/cch1OICv.s 2021-07-15T22:10:17,407 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:17,484 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:17,484 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:17,484 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/copyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:17,485 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/crkformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/crkformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:17,494 Using built-in specs. 2021-07-15T22:10:17,495 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:17,496 Target: arm-linux-gnueabihf 2021-07-15T22:10:17,496 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:17,496 Thread model: posix 2021-07-15T22:10:17,496 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:17,496 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:17,497 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:17,500 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/crkformat.cpp -quiet -dumpbase crkformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/crkformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc61WNsL.s 2021-07-15T22:10:17,512 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:17,512 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:17,512 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:17,512 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:17,512 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:17,513 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:17,513 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:17,513 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:17,514 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:17,514 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:17,514 #include "..." search starts here: 2021-07-15T22:10:17,514 #include <...> search starts here: 2021-07-15T22:10:17,514 /usr/include/eigen3 2021-07-15T22:10:17,514 include 2021-07-15T22:10:17,515 /usr/include/python3.9 2021-07-15T22:10:17,515 /usr/include/c++/10 2021-07-15T22:10:17,515 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:17,515 /usr/include/c++/10/backward 2021-07-15T22:10:17,515 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:17,515 /usr/local/include 2021-07-15T22:10:17,516 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:17,516 /usr/include 2021-07-15T22:10:17,516 End of search list. 2021-07-15T22:10:17,516 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:17,516 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:17,517 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:17,533 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:18,893 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:18,893 from include/openbabel/mol.h:43, 2021-07-15T22:10:18,894 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:18,894 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:10:18,894 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:18,894 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:18,894 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:18,894 | ^ 2021-07-15T22:10:18,895 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:18,895 37 | # define UNUSED(x) x 2021-07-15T22:10:18,895 | ^ 2021-07-15T22:10:19,590 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:19,590 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:19,591 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:10:19,591 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:19,591 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:19,591 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:19,591 | ^ 2021-07-15T22:10:19,591 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:19,592 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:19,592 | ^~~~~~~~ 2021-07-15T22:10:19,594 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:19,594 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:19,594 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:19,594 | ^ 2021-07-15T22:10:19,595 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:19,595 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:19,595 | ^~~~~~~~ 2021-07-15T22:10:19,611 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:19,611 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:19,611 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:19,611 | ^ 2021-07-15T22:10:19,611 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:19,611 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:19,612 | ^~~~~~~~ 2021-07-15T22:10:19,615 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:19,616 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:19,616 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:10:19,616 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:19,616 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:19,616 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:19,616 | ^ 2021-07-15T22:10:19,616 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:19,617 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:19,617 | ^~~~~~~~ 2021-07-15T22:10:22,442 ./src/formats/crkformat.cpp: In static member function ‘static bool OpenBabel::CRK2DFormat::ReadCRK(std::istream&, OpenBabel::OBMol&, const char*)’: 2021-07-15T22:10:22,442 ./src/formats/crkformat.cpp:304:38: warning: ‘bondStyle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,442 304 | stbondStyle[numBonds]=bondStyle; 2021-07-15T22:10:22,442 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:10:22,442 ./src/formats/crkformat.cpp:302:35: warning: ‘bondTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,443 302 | stbondTo[numBonds]=bondTo; 2021-07-15T22:10:22,443 | ~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:10:22,443 ./src/formats/crkformat.cpp:301:37: warning: ‘bondFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,443 301 | stbondFrom[numBonds]=bondFrom; 2021-07-15T22:10:22,443 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:10:22,443 ./src/formats/crkformat.cpp:287:36: warning: ‘atomCharge’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,443 287 | atm.SetFormalCharge((int)atomCharge); 2021-07-15T22:10:22,443 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:10:22,444 ./src/formats/crkformat.cpp:286:30: warning: ‘atomZ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,444 286 | atm.SetVector(atomX,atomY,atomZ); 2021-07-15T22:10:22,444 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:22,444 ./src/formats/crkformat.cpp:286:30: warning: ‘atomY’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,444 ./src/formats/crkformat.cpp:286:30: warning: ‘atomX’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,444 In file included from include/openbabel/mol.h:43, 2021-07-15T22:10:22,444 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:22,445 from ./src/formats/crkformat.cpp:16: 2021-07-15T22:10:22,445 include/openbabel/atom.h:144:52: warning: ‘atomNumber’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,445 144 | void SetAtomicNum(int atomicnum) { _ele = (char)atomicnum; } 2021-07-15T22:10:22,445 | ^~~~~~~~~~~~~~~ 2021-07-15T22:10:22,445 ./src/formats/crkformat.cpp:241:16: note: ‘atomNumber’ was declared here 2021-07-15T22:10:22,445 241 | int atomID,atomNumber; 2021-07-15T22:10:22,445 | ^~~~~~~~~~ 2021-07-15T22:10:22,446 ./src/formats/crkformat.cpp:283:37: warning: ‘atomID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:10:22,446 283 | statomID[numAtoms++]=atomID; 2021-07-15T22:10:22,446 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:10:23,329 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,330 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/crkformat.o /tmp/cc61WNsL.s 2021-07-15T22:10:23,335 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:23,668 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:23,668 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:23,668 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,670 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/crystal09format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:23,679 Using built-in specs. 2021-07-15T22:10:23,681 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:23,681 Target: arm-linux-gnueabihf 2021-07-15T22:10:23,681 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:23,681 Thread model: posix 2021-07-15T22:10:23,682 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:23,682 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:23,683 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:23,686 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/crystal09format.cpp -quiet -dumpbase crystal09format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpgBF9X.s 2021-07-15T22:10:23,698 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:23,698 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:23,699 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:23,699 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:23,699 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:23,699 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:23,700 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:23,700 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:23,700 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:23,700 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:23,700 #include "..." search starts here: 2021-07-15T22:10:23,700 #include <...> search starts here: 2021-07-15T22:10:23,701 /usr/include/eigen3 2021-07-15T22:10:23,701 include 2021-07-15T22:10:23,701 /usr/include/python3.9 2021-07-15T22:10:23,701 /usr/include/c++/10 2021-07-15T22:10:23,701 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:23,701 /usr/include/c++/10/backward 2021-07-15T22:10:23,702 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:23,702 /usr/local/include 2021-07-15T22:10:23,702 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:23,702 /usr/include 2021-07-15T22:10:23,702 End of search list. 2021-07-15T22:10:23,702 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:23,703 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:23,703 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:23,717 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:25,160 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:25,160 from include/openbabel/mol.h:43, 2021-07-15T22:10:25,160 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:25,160 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:10:25,160 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:25,161 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:25,161 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:25,161 | ^ 2021-07-15T22:10:25,161 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:25,161 37 | # define UNUSED(x) x 2021-07-15T22:10:25,161 | ^ 2021-07-15T22:10:25,773 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:25,774 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:25,774 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:10:25,774 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:25,774 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:25,774 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:25,774 | ^ 2021-07-15T22:10:25,774 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:25,775 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:25,775 | ^~~~~~~~ 2021-07-15T22:10:25,777 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:25,777 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:25,777 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:25,778 | ^ 2021-07-15T22:10:25,778 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:25,778 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:25,778 | ^~~~~~~~ 2021-07-15T22:10:25,794 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:25,794 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:25,794 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:25,794 | ^ 2021-07-15T22:10:25,794 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:25,794 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:25,794 | ^~~~~~~~ 2021-07-15T22:10:25,798 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:25,799 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:25,799 from ./src/formats/crystal09format.cpp:21: 2021-07-15T22:10:25,799 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:25,799 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:25,799 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:25,799 | ^ 2021-07-15T22:10:25,799 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:25,800 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:25,800 | ^~~~~~~~ 2021-07-15T22:10:28,610 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:28,610 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:10:28,610 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:28,611 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:28,611 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:28,611 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:28,649 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:10:28,650 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:28,698 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:28,698 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:29,659 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:10:29,660 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:10:29,660 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::Crystal09Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:29,660 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,660 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:29,660 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:29,660 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,661 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:10:29,661 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:10:29,661 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:29,662 from ./src/formats/crystal09format.cpp:18: 2021-07-15T22:10:29,662 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,662 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,662 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,662 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,662 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,663 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,663 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,663 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,663 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,663 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,663 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,663 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,664 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,664 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,664 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,664 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,664 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,664 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,664 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,665 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,665 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,665 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:29,665 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:29,665 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:29,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:31,145 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:31,146 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o /tmp/ccpgBF9X.s 2021-07-15T22:10:31,152 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:31,651 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:31,651 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:31,651 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/crystal09format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:31,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/cssrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:31,662 Using built-in specs. 2021-07-15T22:10:31,663 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:31,663 Target: arm-linux-gnueabihf 2021-07-15T22:10:31,663 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:31,664 Thread model: posix 2021-07-15T22:10:31,664 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:31,664 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:31,665 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:31,668 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/cssrformat.cpp -quiet -dumpbase cssrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpTRGHi.s 2021-07-15T22:10:31,681 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:31,682 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:31,682 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:31,682 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:31,682 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:31,682 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:31,683 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:31,683 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:31,683 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:31,683 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:31,683 #include "..." search starts here: 2021-07-15T22:10:31,684 #include <...> search starts here: 2021-07-15T22:10:31,684 /usr/include/eigen3 2021-07-15T22:10:31,684 include 2021-07-15T22:10:31,684 /usr/include/python3.9 2021-07-15T22:10:31,684 /usr/include/c++/10 2021-07-15T22:10:31,684 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:31,684 /usr/include/c++/10/backward 2021-07-15T22:10:31,685 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:31,685 /usr/local/include 2021-07-15T22:10:31,685 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:31,685 /usr/include 2021-07-15T22:10:31,685 End of search list. 2021-07-15T22:10:31,685 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:31,685 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:31,686 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:31,699 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:33,069 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:33,070 from include/openbabel/mol.h:43, 2021-07-15T22:10:33,070 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:33,070 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:10:33,070 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:33,070 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:33,070 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:33,071 | ^ 2021-07-15T22:10:33,071 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:33,071 37 | # define UNUSED(x) x 2021-07-15T22:10:33,071 | ^ 2021-07-15T22:10:33,767 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:33,768 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:33,768 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:10:33,768 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:33,768 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:33,768 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:33,768 | ^ 2021-07-15T22:10:33,768 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:33,769 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:33,769 | ^~~~~~~~ 2021-07-15T22:10:33,771 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:33,771 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:33,772 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:33,772 | ^ 2021-07-15T22:10:33,772 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:33,772 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:33,772 | ^~~~~~~~ 2021-07-15T22:10:33,788 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:33,788 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:33,788 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:33,788 | ^ 2021-07-15T22:10:33,788 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:33,789 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:33,789 | ^~~~~~~~ 2021-07-15T22:10:33,793 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:33,793 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:33,793 from ./src/formats/cssrformat.cpp:17: 2021-07-15T22:10:33,793 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:33,793 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:33,793 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:33,794 | ^ 2021-07-15T22:10:33,794 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:33,794 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:33,794 | ^~~~~~~~ 2021-07-15T22:10:36,263 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,264 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o /tmp/ccpTRGHi.s 2021-07-15T22:10:36,268 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:36,481 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:36,481 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:36,483 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/cssrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/daltonformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:36,492 Using built-in specs. 2021-07-15T22:10:36,493 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:36,493 Target: arm-linux-gnueabihf 2021-07-15T22:10:36,493 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:36,493 Thread model: posix 2021-07-15T22:10:36,493 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:36,494 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:36,494 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:36,494 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/daltonformat.cpp -quiet -dumpbase daltonformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccJ8EIit.s 2021-07-15T22:10:36,505 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:36,505 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:36,506 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:36,506 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:36,506 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:36,506 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:36,507 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:36,507 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:36,507 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:36,507 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:36,507 #include "..." search starts here: 2021-07-15T22:10:36,508 #include <...> search starts here: 2021-07-15T22:10:36,508 /usr/include/eigen3 2021-07-15T22:10:36,508 include 2021-07-15T22:10:36,508 /usr/include/python3.9 2021-07-15T22:10:36,508 /usr/include/c++/10 2021-07-15T22:10:36,508 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:36,509 /usr/include/c++/10/backward 2021-07-15T22:10:36,509 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:36,509 /usr/local/include 2021-07-15T22:10:36,509 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:36,509 /usr/include 2021-07-15T22:10:36,509 End of search list. 2021-07-15T22:10:36,510 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:36,510 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:36,510 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:36,526 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:38,124 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:38,125 from include/openbabel/mol.h:43, 2021-07-15T22:10:38,125 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:38,125 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:10:38,125 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:38,125 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:38,126 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:38,126 | ^ 2021-07-15T22:10:38,126 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:38,126 37 | # define UNUSED(x) x 2021-07-15T22:10:38,126 | ^ 2021-07-15T22:10:38,820 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:38,820 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:38,820 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:10:38,820 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:38,820 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:38,821 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:38,821 | ^ 2021-07-15T22:10:38,821 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:38,821 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:38,821 | ^~~~~~~~ 2021-07-15T22:10:38,823 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:38,824 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:38,824 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:38,824 | ^ 2021-07-15T22:10:38,824 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:38,824 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:38,824 | ^~~~~~~~ 2021-07-15T22:10:38,840 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:38,840 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:38,840 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:38,840 | ^ 2021-07-15T22:10:38,841 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:38,841 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:38,841 | ^~~~~~~~ 2021-07-15T22:10:38,845 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:38,845 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:38,845 from ./src/formats/daltonformat.cpp:15: 2021-07-15T22:10:38,845 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:38,845 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:38,846 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:38,846 | ^ 2021-07-15T22:10:38,846 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:38,846 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:38,846 | ^~~~~~~~ 2021-07-15T22:10:39,145 ./src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:39,145 ./src/formats/daltonformat.cpp:142:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:10:39,145 142 | int atomcount = 0; // for each atom type 2021-07-15T22:10:39,145 | ^~~~~~~~~ 2021-07-15T22:10:39,152 ./src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:10:39,152 ./src/formats/daltonformat.cpp:306:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:10:39,152 306 | if(atom->GetAtomicNum() != atomtype) 2021-07-15T22:10:39,153 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:10:39,156 ./src/formats/daltonformat.cpp:326:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:10:39,156 326 | if(atom->GetAtomicNum() != atomtype) 2021-07-15T22:10:39,156 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ 2021-07-15T22:10:42,383 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:42,383 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o /tmp/ccJ8EIit.s 2021-07-15T22:10:42,388 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:42,691 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:42,691 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:42,691 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/daltonformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:42,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/dlpolyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:42,702 Using built-in specs. 2021-07-15T22:10:42,703 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:42,703 Target: arm-linux-gnueabihf 2021-07-15T22:10:42,703 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:42,703 Thread model: posix 2021-07-15T22:10:42,703 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:42,703 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:42,703 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:42,704 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/dlpolyformat.cpp -quiet -dumpbase dlpolyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8HuBaJ.s 2021-07-15T22:10:42,716 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:42,717 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:42,717 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:42,718 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:42,718 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:42,718 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:42,718 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:42,718 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:42,719 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:42,719 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:42,719 #include "..." search starts here: 2021-07-15T22:10:42,719 #include <...> search starts here: 2021-07-15T22:10:42,719 /usr/include/eigen3 2021-07-15T22:10:42,719 include 2021-07-15T22:10:42,720 /usr/include/python3.9 2021-07-15T22:10:42,720 /usr/include/c++/10 2021-07-15T22:10:42,720 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:42,720 /usr/include/c++/10/backward 2021-07-15T22:10:42,720 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:42,720 /usr/local/include 2021-07-15T22:10:42,720 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:42,721 /usr/include 2021-07-15T22:10:42,721 End of search list. 2021-07-15T22:10:42,721 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:42,721 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:42,722 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:42,736 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:44,111 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:44,111 from include/openbabel/mol.h:43, 2021-07-15T22:10:44,111 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:44,112 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:10:44,112 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:44,112 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:44,112 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:44,112 | ^ 2021-07-15T22:10:44,112 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:44,112 37 | # define UNUSED(x) x 2021-07-15T22:10:44,113 | ^ 2021-07-15T22:10:44,808 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:44,808 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:44,808 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:10:44,808 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:44,808 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:44,808 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:44,809 | ^ 2021-07-15T22:10:44,809 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:44,809 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:44,809 | ^~~~~~~~ 2021-07-15T22:10:44,811 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:44,812 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:44,812 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:44,812 | ^ 2021-07-15T22:10:44,812 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:44,812 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:44,812 | ^~~~~~~~ 2021-07-15T22:10:44,828 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:44,828 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:44,828 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:44,828 | ^ 2021-07-15T22:10:44,829 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:44,829 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:44,829 | ^~~~~~~~ 2021-07-15T22:10:44,833 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:44,833 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:44,833 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:10:44,833 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:44,833 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:44,833 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:44,834 | ^ 2021-07-15T22:10:44,834 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:44,834 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:44,834 | ^~~~~~~~ 2021-07-15T22:10:45,337 ./src/formats/dlpolyformat.cpp: In member function ‘bool OpenBabel::DlpolyInputReader::ParseUnitCell(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:10:45,337 ./src/formats/dlpolyformat.cpp:147:10: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:10:45,337 147 | bool ok; 2021-07-15T22:10:45,337 | ^~ 2021-07-15T22:10:50,538 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:10:50,538 from include/openbabel/mol.h:35, 2021-07-15T22:10:50,538 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:50,539 from ./src/formats/dlpolyformat.cpp:14: 2021-07-15T22:10:50,539 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:10:50,539 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:10:50,539 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:10:50,539 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:50,814 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:10:50,814 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:10:50,814 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:10:50,815 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:10:53,511 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:53,512 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o /tmp/cc8HuBaJ.s 2021-07-15T22:10:53,517 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:54,583 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:54,583 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:54,584 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dlpolyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:54,588 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/dmolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:54,598 Using built-in specs. 2021-07-15T22:10:54,600 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:54,600 Target: arm-linux-gnueabihf 2021-07-15T22:10:54,600 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:54,601 Thread model: posix 2021-07-15T22:10:54,601 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:54,601 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:54,602 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:54,605 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/dmolformat.cpp -quiet -dumpbase dmolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccM2S3p5.s 2021-07-15T22:10:54,617 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:54,617 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:54,618 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:54,618 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:54,618 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:54,618 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:54,619 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:54,619 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:54,619 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:54,619 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:54,619 #include "..." search starts here: 2021-07-15T22:10:54,620 #include <...> search starts here: 2021-07-15T22:10:54,620 /usr/include/eigen3 2021-07-15T22:10:54,620 include 2021-07-15T22:10:54,620 /usr/include/python3.9 2021-07-15T22:10:54,620 /usr/include/c++/10 2021-07-15T22:10:54,620 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:54,621 /usr/include/c++/10/backward 2021-07-15T22:10:54,621 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:54,621 /usr/local/include 2021-07-15T22:10:54,621 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:54,621 /usr/include 2021-07-15T22:10:54,622 End of search list. 2021-07-15T22:10:54,622 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:54,622 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:54,622 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:54,639 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:10:56,043 In file included from include/openbabel/atom.h:33, 2021-07-15T22:10:56,043 from include/openbabel/mol.h:43, 2021-07-15T22:10:56,043 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:56,044 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:10:56,044 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:10:56,044 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:10:56,044 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:10:56,044 | ^ 2021-07-15T22:10:56,044 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:10:56,045 37 | # define UNUSED(x) x 2021-07-15T22:10:56,045 | ^ 2021-07-15T22:10:56,736 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:56,736 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:56,736 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:10:56,736 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:56,736 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:56,736 862 | {return new OBVibrationData(*this);} 2021-07-15T22:10:56,737 | ^ 2021-07-15T22:10:56,737 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:10:56,737 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:10:56,737 | ^~~~~~~~ 2021-07-15T22:10:56,739 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:56,740 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:56,740 907 | {return new OBDOSData(*this);} 2021-07-15T22:10:56,740 | ^ 2021-07-15T22:10:56,740 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:10:56,740 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:10:56,740 | ^~~~~~~~ 2021-07-15T22:10:56,756 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:56,756 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:56,756 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:10:56,756 | ^ 2021-07-15T22:10:56,756 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:10:56,757 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:10:56,757 | ^~~~~~~~ 2021-07-15T22:10:56,761 In file included from include/openbabel/mol.h:52, 2021-07-15T22:10:56,761 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:10:56,761 from ./src/formats/dmolformat.cpp:16: 2021-07-15T22:10:56,761 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:10:56,761 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:10:56,761 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:10:56,762 | ^ 2021-07-15T22:10:56,762 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:10:56,762 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:10:56,762 | ^~~~~~~~ 2021-07-15T22:10:59,602 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:59,603 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o /tmp/ccM2S3p5.s 2021-07-15T22:10:59,607 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:10:59,866 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:10:59,866 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:10:59,867 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/dmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:59,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/exampleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:10:59,877 Using built-in specs. 2021-07-15T22:10:59,878 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:10:59,878 Target: arm-linux-gnueabihf 2021-07-15T22:10:59,878 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:10:59,879 Thread model: posix 2021-07-15T22:10:59,879 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:10:59,879 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:10:59,879 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:10:59,879 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/exampleformat.cpp -quiet -dumpbase exampleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZQw7Hi.s 2021-07-15T22:10:59,891 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:59,892 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:59,892 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:59,892 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:10:59,892 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:10:59,892 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:10:59,893 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:10:59,893 ignoring duplicate directory "/usr/include/" 2021-07-15T22:10:59,893 as it is a non-system directory that duplicates a system directory 2021-07-15T22:10:59,893 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:10:59,893 #include "..." search starts here: 2021-07-15T22:10:59,894 #include <...> search starts here: 2021-07-15T22:10:59,894 /usr/include/eigen3 2021-07-15T22:10:59,894 include 2021-07-15T22:10:59,894 /usr/include/python3.9 2021-07-15T22:10:59,894 /usr/include/c++/10 2021-07-15T22:10:59,894 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:10:59,894 /usr/include/c++/10/backward 2021-07-15T22:10:59,895 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:10:59,895 /usr/local/include 2021-07-15T22:10:59,895 /usr/include/arm-linux-gnueabihf 2021-07-15T22:10:59,895 /usr/include 2021-07-15T22:10:59,895 End of search list. 2021-07-15T22:10:59,895 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:10:59,895 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:10:59,896 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:10:59,910 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:00,264 ./src/formats/exampleformat.cpp:178:2: warning: "/*" within comment [-Wcomment] 2021-07-15T22:11:00,264 178 | /* Return true if ok. Returning false means discard the OBMol and stop 2021-07-15T22:11:00,264 | 2021-07-15T22:11:01,271 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:01,271 from include/openbabel/mol.h:43, 2021-07-15T22:11:01,271 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:01,271 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:11:01,271 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:01,272 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:01,272 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:01,272 | ^ 2021-07-15T22:11:01,272 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:01,272 37 | # define UNUSED(x) x 2021-07-15T22:11:01,272 | ^ 2021-07-15T22:11:02,014 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:02,014 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:02,014 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:11:02,014 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:02,014 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:02,015 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:02,015 | ^ 2021-07-15T22:11:02,015 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:02,015 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:02,015 | ^~~~~~~~ 2021-07-15T22:11:02,017 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:02,018 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:02,018 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:02,018 | ^ 2021-07-15T22:11:02,018 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:02,018 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:02,018 | ^~~~~~~~ 2021-07-15T22:11:02,034 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:02,034 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:02,034 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:02,035 | ^ 2021-07-15T22:11:02,035 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:02,035 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:02,035 | ^~~~~~~~ 2021-07-15T22:11:02,039 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:02,039 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:02,039 from ./src/formats/exampleformat.cpp:34: 2021-07-15T22:11:02,039 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:02,039 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:02,040 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:02,040 | ^ 2021-07-15T22:11:02,040 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:02,040 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:02,040 | ^~~~~~~~ 2021-07-15T22:11:02,326 ./src/formats/exampleformat.cpp: In member function ‘virtual int OpenBabel::XXXFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:11:02,326 ./src/formats/exampleformat.cpp:128:30: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:11:02,326 128 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:11:02,326 | ~~~~^ 2021-07-15T22:11:02,327 ./src/formats/exampleformat.cpp:128:47: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:11:02,327 128 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:11:02,327 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:11:02,327 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:02,327 ./src/formats/exampleformat.cpp:156:12: warning: unused variable ‘ifs’ [-Wunused-variable] 2021-07-15T22:11:02,327 156 | istream& ifs = *pConv->GetInStream(); 2021-07-15T22:11:02,327 | ^~~ 2021-07-15T22:11:02,331 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:02,331 ./src/formats/exampleformat.cpp:203:6: warning: variable ‘levels’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:11:02,332 203 | int levels=0; 2021-07-15T22:11:02,332 | ^~~~~~ 2021-07-15T22:11:03,669 ./src/formats/exampleformat.cpp: In member function ‘virtual bool OpenBabel::XXXFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:03,669 ./src/formats/exampleformat.cpp:171:20: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:11:03,670 171 | pmol->SetDimension(dim); 2021-07-15T22:11:03,670 | ~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:11:04,429 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,430 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o /tmp/ccZQw7Hi.s 2021-07-15T22:11:04,436 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:04,637 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:04,637 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:04,637 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exampleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/exyzformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:04,647 Using built-in specs. 2021-07-15T22:11:04,648 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:04,648 Target: arm-linux-gnueabihf 2021-07-15T22:11:04,648 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:04,648 Thread model: posix 2021-07-15T22:11:04,649 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:04,649 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:04,649 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:04,649 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/exyzformat.cpp -quiet -dumpbase exyzformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccDwOHWM.s 2021-07-15T22:11:04,662 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:04,662 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:04,662 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:04,662 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:04,663 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:04,663 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:04,663 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:04,663 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:04,663 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:04,664 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:04,664 #include "..." search starts here: 2021-07-15T22:11:04,664 #include <...> search starts here: 2021-07-15T22:11:04,664 /usr/include/eigen3 2021-07-15T22:11:04,664 include 2021-07-15T22:11:04,665 /usr/include/python3.9 2021-07-15T22:11:04,665 /usr/include/c++/10 2021-07-15T22:11:04,665 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:04,665 /usr/include/c++/10/backward 2021-07-15T22:11:04,665 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:04,665 /usr/local/include 2021-07-15T22:11:04,666 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:04,666 /usr/include 2021-07-15T22:11:04,666 End of search list. 2021-07-15T22:11:04,666 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:04,666 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:04,667 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:04,683 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:06,055 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:06,055 from include/openbabel/mol.h:43, 2021-07-15T22:11:06,056 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:06,056 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:11:06,056 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:06,056 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:06,056 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:06,056 | ^ 2021-07-15T22:11:06,057 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:06,057 37 | # define UNUSED(x) x 2021-07-15T22:11:06,057 | ^ 2021-07-15T22:11:06,753 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:06,753 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:06,753 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:11:06,753 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:06,753 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:06,754 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:06,754 | ^ 2021-07-15T22:11:06,754 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:06,754 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:06,754 | ^~~~~~~~ 2021-07-15T22:11:06,757 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:06,757 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:06,757 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:06,757 | ^ 2021-07-15T22:11:06,757 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:06,757 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:06,758 | ^~~~~~~~ 2021-07-15T22:11:06,773 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:06,773 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:06,773 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:06,774 | ^ 2021-07-15T22:11:06,774 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:06,774 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:06,774 | ^~~~~~~~ 2021-07-15T22:11:06,778 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:06,778 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:06,778 from ./src/formats/exyzformat.cpp:18: 2021-07-15T22:11:06,778 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:06,778 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:06,779 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:06,779 | ^ 2021-07-15T22:11:06,779 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:06,779 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:06,779 | ^~~~~~~~ 2021-07-15T22:11:07,204 ./src/formats/exyzformat.cpp: In member function ‘virtual bool OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:07,204 ./src/formats/exyzformat.cpp:133:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:11:07,204 133 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:11:07,204 | ~^ ~~~~~~~ 2021-07-15T22:11:07,205 | | | 2021-07-15T22:11:07,205 | | unsigned int* 2021-07-15T22:11:07,205 | int* 2021-07-15T22:11:07,205 | %d 2021-07-15T22:11:07,272 ./src/formats/exyzformat.cpp:118:19: warning: variable ‘virtualAtoms’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:11:07,272 118 | bool unitCell,virtualAtoms; 2021-07-15T22:11:07,272 | ^~~~~~~~~~~~ 2021-07-15T22:11:12,706 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:12,706 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o /tmp/ccDwOHWM.s 2021-07-15T22:11:12,712 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:13,196 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:13,196 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:13,196 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/exyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:13,199 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fastaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:13,208 Using built-in specs. 2021-07-15T22:11:13,209 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:13,210 Target: arm-linux-gnueabihf 2021-07-15T22:11:13,210 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:13,210 Thread model: posix 2021-07-15T22:11:13,210 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:13,210 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:13,210 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:13,210 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fastaformat.cpp -quiet -dumpbase fastaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc7i22C1.s 2021-07-15T22:11:13,224 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:13,224 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:13,224 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:13,226 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:13,226 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:13,226 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:13,226 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:13,227 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:13,227 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:13,227 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:13,227 #include "..." search starts here: 2021-07-15T22:11:13,227 #include <...> search starts here: 2021-07-15T22:11:13,227 /usr/include/eigen3 2021-07-15T22:11:13,227 include 2021-07-15T22:11:13,228 /usr/include/python3.9 2021-07-15T22:11:13,228 /usr/include/c++/10 2021-07-15T22:11:13,228 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:13,228 /usr/include/c++/10/backward 2021-07-15T22:11:13,228 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:13,228 /usr/local/include 2021-07-15T22:11:13,229 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:13,229 /usr/include 2021-07-15T22:11:13,229 End of search list. 2021-07-15T22:11:13,229 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:13,229 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:13,229 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:13,244 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:14,659 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:14,660 from include/openbabel/mol.h:43, 2021-07-15T22:11:14,660 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:14,660 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:11:14,660 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:14,660 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:14,660 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:14,661 | ^ 2021-07-15T22:11:14,661 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:14,661 37 | # define UNUSED(x) x 2021-07-15T22:11:14,661 | ^ 2021-07-15T22:11:15,356 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:15,356 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:15,357 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:11:15,357 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:15,357 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:15,357 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:15,357 | ^ 2021-07-15T22:11:15,357 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:15,358 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:15,358 | ^~~~~~~~ 2021-07-15T22:11:15,360 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:15,360 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:15,360 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:15,360 | ^ 2021-07-15T22:11:15,360 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:15,361 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:15,361 | ^~~~~~~~ 2021-07-15T22:11:15,376 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:15,377 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:15,377 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:15,377 | ^ 2021-07-15T22:11:15,377 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:15,377 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:15,377 | ^~~~~~~~ 2021-07-15T22:11:15,381 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:15,381 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:15,382 from ./src/formats/fastaformat.cpp:21: 2021-07-15T22:11:15,382 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:15,382 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:15,382 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:15,382 | ^ 2021-07-15T22:11:15,382 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:15,382 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:15,383 | ^~~~~~~~ 2021-07-15T22:11:15,743 ./src/formats/fastaformat.cpp: In function ‘void OpenBabel::add_residue(OpenBabel::OBMol*, OpenBabel::OBResidue*, double, double, long unsigned int&, OpenBabel::ResidueRecord*, int, OpenBabel::OBAtom*&, bool, bool)’: 2021-07-15T22:11:15,743 ./src/formats/fastaformat.cpp:387:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:11:15,743 387 | else if (atom_count > resBondFromOffset) 2021-07-15T22:11:15,743 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:19,227 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:19,227 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o /tmp/cc7i22C1.s 2021-07-15T22:11:19,233 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:19,608 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:19,608 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:19,608 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:19,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fastsearchformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:19,620 Using built-in specs. 2021-07-15T22:11:19,621 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:19,622 Target: arm-linux-gnueabihf 2021-07-15T22:11:19,622 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:19,622 Thread model: posix 2021-07-15T22:11:19,622 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:19,622 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:19,622 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:19,623 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fastsearchformat.cpp -quiet -dumpbase fastsearchformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cces2ovg.s 2021-07-15T22:11:19,635 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:19,635 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:19,636 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:19,636 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:19,636 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:19,636 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:19,637 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:19,637 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:19,637 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:19,637 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:19,637 #include "..." search starts here: 2021-07-15T22:11:19,638 #include <...> search starts here: 2021-07-15T22:11:19,638 /usr/include/eigen3 2021-07-15T22:11:19,638 include 2021-07-15T22:11:19,638 /usr/include/python3.9 2021-07-15T22:11:19,638 /usr/include/c++/10 2021-07-15T22:11:19,638 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:19,639 /usr/include/c++/10/backward 2021-07-15T22:11:19,639 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:19,639 /usr/local/include 2021-07-15T22:11:19,639 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:19,639 /usr/include 2021-07-15T22:11:19,639 End of search list. 2021-07-15T22:11:19,640 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:19,640 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:19,640 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:19,656 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:21,017 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:21,017 from include/openbabel/mol.h:43, 2021-07-15T22:11:21,018 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:11:21,018 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:21,018 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:21,018 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:21,018 | ^ 2021-07-15T22:11:21,018 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:21,018 37 | # define UNUSED(x) x 2021-07-15T22:11:21,019 | ^ 2021-07-15T22:11:21,716 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:21,717 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:11:21,717 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:21,717 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:21,717 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:21,717 | ^ 2021-07-15T22:11:21,717 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:21,718 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:21,718 | ^~~~~~~~ 2021-07-15T22:11:21,721 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:21,722 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:21,722 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:21,722 | ^ 2021-07-15T22:11:21,722 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:21,722 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:21,722 | ^~~~~~~~ 2021-07-15T22:11:21,741 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:21,742 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:21,742 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:21,742 | ^ 2021-07-15T22:11:21,742 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:21,742 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:21,742 | ^~~~~~~~ 2021-07-15T22:11:21,742 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:21,742 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:11:21,743 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:21,743 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:21,743 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:21,743 | ^ 2021-07-15T22:11:21,743 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:21,743 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:21,743 | ^~~~~~~~ 2021-07-15T22:11:22,151 ./src/formats/fastsearchformat.cpp: In member function ‘void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)’: 2021-07-15T22:11:22,152 ./src/formats/fastsearchformat.cpp:652:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:11:22,152 652 | if(idx>=patternMol.NumBonds()) 2021-07-15T22:11:22,152 | ~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:26,125 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:26,126 from include/openbabel/mol.h:35, 2021-07-15T22:11:26,126 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:11:26,126 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2021-07-15T22:11:26,126 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:26,126 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:26,126 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:26,307 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:26,308 from include/openbabel/mol.h:35, 2021-07-15T22:11:26,308 from ./src/formats/fastsearchformat.cpp:20: 2021-07-15T22:11:26,308 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::FastSearchFormat::AddPattern(std::vector&, OpenBabel::OBMol, int)’: 2021-07-15T22:11:26,308 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:26,308 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:26,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:26,309 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:26,309 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:26,309 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:26,506 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool OpenBabel::FastSearchFormat::ObtainTarget(OpenBabel::OBConversion*, std::vector&, const string&)’: 2021-07-15T22:11:26,506 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:26,506 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:26,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:26,507 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:26,507 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:26,507 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:26,510 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:26,510 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:26,510 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:27,471 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::FastSearchFormat::ReadChemObject(OpenBabel::OBConversion*)’: 2021-07-15T22:11:27,471 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:27,472 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:27,472 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:29,179 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:29,180 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o /tmp/cces2ovg.s 2021-07-15T22:11:29,186 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:29,927 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:29,928 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:29,928 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fastsearchformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:29,933 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fchkformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:29,942 Using built-in specs. 2021-07-15T22:11:29,943 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:29,944 Target: arm-linux-gnueabihf 2021-07-15T22:11:29,944 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:29,944 Thread model: posix 2021-07-15T22:11:29,944 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:29,944 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:29,945 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:29,948 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fchkformat.cpp -quiet -dumpbase fchkformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccC0IJJA.s 2021-07-15T22:11:29,961 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:29,961 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:29,962 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:29,963 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:29,963 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:29,963 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:29,964 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:29,964 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:29,964 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:29,964 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:29,965 #include "..." search starts here: 2021-07-15T22:11:29,965 #include <...> search starts here: 2021-07-15T22:11:29,965 /usr/include/eigen3 2021-07-15T22:11:29,966 include 2021-07-15T22:11:29,966 /usr/include/python3.9 2021-07-15T22:11:29,966 /usr/include/c++/10 2021-07-15T22:11:29,966 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:29,966 /usr/include/c++/10/backward 2021-07-15T22:11:29,966 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:29,967 /usr/local/include 2021-07-15T22:11:29,967 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:29,967 /usr/include 2021-07-15T22:11:29,967 End of search list. 2021-07-15T22:11:29,968 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:29,969 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:29,969 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:29,984 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:31,646 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:31,646 from include/openbabel/mol.h:43, 2021-07-15T22:11:31,646 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:11:31,646 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:31,646 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:31,646 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:31,646 | ^ 2021-07-15T22:11:31,647 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:31,647 37 | # define UNUSED(x) x 2021-07-15T22:11:31,647 | ^ 2021-07-15T22:11:32,345 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:32,345 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:11:32,345 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:32,345 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:32,345 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:32,345 | ^ 2021-07-15T22:11:32,346 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:32,346 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:32,346 | ^~~~~~~~ 2021-07-15T22:11:32,350 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:32,350 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:32,350 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:32,350 | ^ 2021-07-15T22:11:32,350 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:32,350 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:32,351 | ^~~~~~~~ 2021-07-15T22:11:32,367 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:32,367 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:32,368 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:32,368 | ^ 2021-07-15T22:11:32,368 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:32,368 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:32,368 | ^~~~~~~~ 2021-07-15T22:11:32,373 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:32,373 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:11:32,373 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:32,374 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:32,374 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:32,374 | ^ 2021-07-15T22:11:32,374 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:32,374 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:32,374 | ^~~~~~~~ 2021-07-15T22:11:32,695 ./src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:32,696 ./src/formats/fchkformat.cpp:587:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:11:32,696 587 | if (alphaorb_found && (numAOrb > alphaorb.size())) 2021-07-15T22:11:32,696 | ~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:11:32,697 ./src/formats/fchkformat.cpp:600:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:11:32,697 600 | if (betaorb_found && (numBOrb > betaorb.size())) 2021-07-15T22:11:32,697 | ~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-15T22:11:32,709 ./src/formats/fchkformat.cpp:691:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:11:32,709 691 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { 2021-07-15T22:11:32,709 | ~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:11:32,713 ./src/formats/fchkformat.cpp:695:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:11:32,714 695 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation 2021-07-15T22:11:32,714 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:11:36,138 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:36,138 from include/openbabel/mol.h:35, 2021-07-15T22:11:36,139 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:11:36,139 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:11:36,139 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:36,139 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:36,139 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:36,235 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:11:36,235 from include/openbabel/mol.h:35, 2021-07-15T22:11:36,235 from ./src/formats/fchkformat.cpp:21: 2021-07-15T22:11:36,235 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]’: 2021-07-15T22:11:36,235 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,236 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:36,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:36,238 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:36,238 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:36,239 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:38,163 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:38,163 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:38,163 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:11:38,163 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:11:40,691 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:40,692 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o /tmp/ccC0IJJA.s 2021-07-15T22:11:40,697 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:41,490 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:41,490 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:41,490 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fchkformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:41,497 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/featformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/featformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:41,503 Using built-in specs. 2021-07-15T22:11:41,505 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:41,505 Target: arm-linux-gnueabihf 2021-07-15T22:11:41,505 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:41,505 Thread model: posix 2021-07-15T22:11:41,506 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:41,506 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:41,507 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:41,510 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/featformat.cpp -quiet -dumpbase featformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/featformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccd0jgLR.s 2021-07-15T22:11:41,523 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:41,524 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:41,524 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:41,525 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:41,526 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:41,526 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:41,526 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:41,526 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:41,527 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:41,527 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:41,527 #include "..." search starts here: 2021-07-15T22:11:41,527 #include <...> search starts here: 2021-07-15T22:11:41,528 /usr/include/eigen3 2021-07-15T22:11:41,528 include 2021-07-15T22:11:41,528 /usr/include/python3.9 2021-07-15T22:11:41,528 /usr/include/c++/10 2021-07-15T22:11:41,528 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:41,529 /usr/include/c++/10/backward 2021-07-15T22:11:41,529 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:41,529 /usr/local/include 2021-07-15T22:11:41,529 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:41,530 /usr/include 2021-07-15T22:11:41,530 End of search list. 2021-07-15T22:11:41,531 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:41,531 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:41,542 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:41,550 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:42,907 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:42,907 from include/openbabel/mol.h:43, 2021-07-15T22:11:42,907 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:42,907 from ./src/formats/featformat.cpp:17: 2021-07-15T22:11:42,907 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:42,907 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:42,907 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:42,908 | ^ 2021-07-15T22:11:42,908 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:42,908 37 | # define UNUSED(x) x 2021-07-15T22:11:42,908 | ^ 2021-07-15T22:11:43,604 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:43,604 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:43,604 from ./src/formats/featformat.cpp:17: 2021-07-15T22:11:43,604 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:43,605 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:43,605 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:43,605 | ^ 2021-07-15T22:11:43,605 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:43,605 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:43,605 | ^~~~~~~~ 2021-07-15T22:11:43,609 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:43,609 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:43,609 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:43,610 | ^ 2021-07-15T22:11:43,610 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:43,610 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:43,610 | ^~~~~~~~ 2021-07-15T22:11:43,627 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:43,627 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:43,627 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:43,627 | ^ 2021-07-15T22:11:43,627 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:43,628 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:43,628 | ^~~~~~~~ 2021-07-15T22:11:43,633 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:43,633 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:43,633 from ./src/formats/featformat.cpp:17: 2021-07-15T22:11:43,633 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:43,633 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:43,634 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:43,634 | ^ 2021-07-15T22:11:43,634 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:43,634 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:43,634 | ^~~~~~~~ 2021-07-15T22:11:46,074 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:46,075 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/featformat.o /tmp/ccd0jgLR.s 2021-07-15T22:11:46,081 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:46,275 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:46,276 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:46,276 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/featformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:46,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fhformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fhformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:46,286 Using built-in specs. 2021-07-15T22:11:46,287 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:46,287 Target: arm-linux-gnueabihf 2021-07-15T22:11:46,287 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:46,288 Thread model: posix 2021-07-15T22:11:46,288 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:46,288 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:46,288 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:46,288 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fhformat.cpp -quiet -dumpbase fhformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fhformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccl1Ujy3.s 2021-07-15T22:11:46,302 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:46,302 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:46,303 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:46,303 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:46,303 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:46,303 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:46,304 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:46,304 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:46,304 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:46,304 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:46,305 #include "..." search starts here: 2021-07-15T22:11:46,305 #include <...> search starts here: 2021-07-15T22:11:46,305 /usr/include/eigen3 2021-07-15T22:11:46,305 include 2021-07-15T22:11:46,305 /usr/include/python3.9 2021-07-15T22:11:46,305 /usr/include/c++/10 2021-07-15T22:11:46,306 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:46,306 /usr/include/c++/10/backward 2021-07-15T22:11:46,306 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:46,306 /usr/local/include 2021-07-15T22:11:46,306 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:46,307 /usr/include 2021-07-15T22:11:46,307 End of search list. 2021-07-15T22:11:46,307 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:46,307 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:46,308 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:46,325 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:47,689 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:47,689 from include/openbabel/mol.h:43, 2021-07-15T22:11:47,689 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:47,689 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:11:47,689 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:47,690 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:47,690 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:47,690 | ^ 2021-07-15T22:11:47,690 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:47,690 37 | # define UNUSED(x) x 2021-07-15T22:11:47,690 | ^ 2021-07-15T22:11:48,382 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:48,383 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:48,383 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:11:48,383 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:48,383 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:48,383 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:48,384 | ^ 2021-07-15T22:11:48,384 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:48,384 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:48,384 | ^~~~~~~~ 2021-07-15T22:11:48,386 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:48,386 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:48,387 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:48,387 | ^ 2021-07-15T22:11:48,387 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:48,387 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:48,387 | ^~~~~~~~ 2021-07-15T22:11:48,403 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:48,403 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:48,403 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:48,403 | ^ 2021-07-15T22:11:48,403 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:48,403 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:48,404 | ^~~~~~~~ 2021-07-15T22:11:48,407 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:48,408 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:48,408 from ./src/formats/fhformat.cpp:17: 2021-07-15T22:11:48,408 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:48,408 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:48,408 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:48,408 | ^ 2021-07-15T22:11:48,409 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:48,409 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:48,409 | ^~~~~~~~ 2021-07-15T22:11:50,857 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:50,857 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fhformat.o /tmp/ccl1Ujy3.s 2021-07-15T22:11:50,863 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:51,071 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:51,071 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:51,071 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:51,073 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fhiaimsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:51,081 Using built-in specs. 2021-07-15T22:11:51,082 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:51,082 Target: arm-linux-gnueabihf 2021-07-15T22:11:51,082 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:51,083 Thread model: posix 2021-07-15T22:11:51,083 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:51,083 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:51,083 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:51,083 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fhiaimsformat.cpp -quiet -dumpbase fhiaimsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccFDUHTg.s 2021-07-15T22:11:51,095 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:51,095 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:51,096 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:51,097 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:51,097 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:51,097 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:51,098 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:51,098 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:51,098 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:51,098 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:51,098 #include "..." search starts here: 2021-07-15T22:11:51,098 #include <...> search starts here: 2021-07-15T22:11:51,098 /usr/include/eigen3 2021-07-15T22:11:51,098 include 2021-07-15T22:11:51,099 /usr/include/python3.9 2021-07-15T22:11:51,099 /usr/include/c++/10 2021-07-15T22:11:51,099 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:51,099 /usr/include/c++/10/backward 2021-07-15T22:11:51,099 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:51,099 /usr/local/include 2021-07-15T22:11:51,099 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:51,100 /usr/include 2021-07-15T22:11:51,100 End of search list. 2021-07-15T22:11:51,101 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:51,102 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:51,102 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:51,117 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:52,481 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:52,481 from include/openbabel/mol.h:43, 2021-07-15T22:11:52,481 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:52,481 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:11:52,482 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:52,482 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:52,482 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:52,482 | ^ 2021-07-15T22:11:52,482 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:52,482 37 | # define UNUSED(x) x 2021-07-15T22:11:52,483 | ^ 2021-07-15T22:11:53,181 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:53,182 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:53,182 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:11:53,182 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:53,182 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:53,182 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:53,182 | ^ 2021-07-15T22:11:53,183 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:53,183 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:53,183 | ^~~~~~~~ 2021-07-15T22:11:53,187 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:53,187 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:53,187 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:53,187 | ^ 2021-07-15T22:11:53,187 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:53,188 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:53,188 | ^~~~~~~~ 2021-07-15T22:11:53,204 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:53,204 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:53,205 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:53,205 | ^ 2021-07-15T22:11:53,205 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:53,205 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:53,205 | ^~~~~~~~ 2021-07-15T22:11:53,210 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:53,210 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:53,210 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:11:53,211 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:53,211 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:53,211 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:53,211 | ^ 2021-07-15T22:11:53,211 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:53,211 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:53,211 | ^~~~~~~~ 2021-07-15T22:11:55,607 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:11:55,607 from include/openbabel/mol.h:35, 2021-07-15T22:11:55,607 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:55,607 from ./src/formats/fhiaimsformat.cpp:15: 2021-07-15T22:11:55,607 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:11:55,607 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:11:55,607 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:11:55,608 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:55,712 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::FHIaimsFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:11:55,713 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:11:55,713 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:11:55,713 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:11:56,022 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:56,023 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o /tmp/ccFDUHTg.s 2021-07-15T22:11:56,029 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:11:56,271 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:11:56,272 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:11:56,272 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fhiaimsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:56,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fingerprintformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:11:56,283 Using built-in specs. 2021-07-15T22:11:56,284 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:11:56,284 Target: arm-linux-gnueabihf 2021-07-15T22:11:56,285 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:11:56,285 Thread model: posix 2021-07-15T22:11:56,285 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:11:56,286 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:11:56,286 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:11:56,286 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fingerprintformat.cpp -quiet -dumpbase fingerprintformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccKsqDwu.s 2021-07-15T22:11:56,299 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:56,299 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:56,300 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:56,300 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:11:56,300 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:11:56,300 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:11:56,301 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:11:56,301 ignoring duplicate directory "/usr/include/" 2021-07-15T22:11:56,301 as it is a non-system directory that duplicates a system directory 2021-07-15T22:11:56,301 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:11:56,302 #include "..." search starts here: 2021-07-15T22:11:56,302 #include <...> search starts here: 2021-07-15T22:11:56,302 /usr/include/eigen3 2021-07-15T22:11:56,302 include 2021-07-15T22:11:56,302 /usr/include/python3.9 2021-07-15T22:11:56,302 /usr/include/c++/10 2021-07-15T22:11:56,302 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:11:56,303 /usr/include/c++/10/backward 2021-07-15T22:11:56,303 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:11:56,303 /usr/local/include 2021-07-15T22:11:56,303 /usr/include/arm-linux-gnueabihf 2021-07-15T22:11:56,303 /usr/include 2021-07-15T22:11:56,303 End of search list. 2021-07-15T22:11:56,304 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:11:56,304 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:11:56,304 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:11:56,317 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:11:57,792 In file included from include/openbabel/atom.h:33, 2021-07-15T22:11:57,793 from include/openbabel/mol.h:43, 2021-07-15T22:11:57,793 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:57,793 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:11:57,793 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:11:57,793 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:11:57,793 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:11:57,794 | ^ 2021-07-15T22:11:57,794 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:11:57,794 37 | # define UNUSED(x) x 2021-07-15T22:11:57,794 | ^ 2021-07-15T22:11:58,486 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:58,486 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:58,487 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:11:58,487 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,487 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,487 862 | {return new OBVibrationData(*this);} 2021-07-15T22:11:58,487 | ^ 2021-07-15T22:11:58,487 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:11:58,488 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:11:58,488 | ^~~~~~~~ 2021-07-15T22:11:58,490 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,490 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,490 907 | {return new OBDOSData(*this);} 2021-07-15T22:11:58,490 | ^ 2021-07-15T22:11:58,491 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:11:58,491 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:11:58,491 | ^~~~~~~~ 2021-07-15T22:11:58,506 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,507 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,507 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:11:58,507 | ^ 2021-07-15T22:11:58,507 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:11:58,507 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:11:58,507 | ^~~~~~~~ 2021-07-15T22:11:58,511 In file included from include/openbabel/mol.h:52, 2021-07-15T22:11:58,511 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:11:58,511 from ./src/formats/fingerprintformat.cpp:19: 2021-07-15T22:11:58,512 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:11:58,512 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:11:58,512 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:11:58,512 | ^ 2021-07-15T22:11:58,512 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:11:58,512 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:11:58,512 | ^~~~~~~~ 2021-07-15T22:12:02,013 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:02,013 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o /tmp/ccKsqDwu.s 2021-07-15T22:12:02,018 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:02,341 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:02,341 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:02,342 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fingerprintformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:02,347 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/fpsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:02,355 Using built-in specs. 2021-07-15T22:12:02,356 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:02,356 Target: arm-linux-gnueabihf 2021-07-15T22:12:02,356 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:02,356 Thread model: posix 2021-07-15T22:12:02,356 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:02,356 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:02,357 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:02,358 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/fpsformat.cpp -quiet -dumpbase fpsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccYiZcxX.s 2021-07-15T22:12:02,371 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:02,372 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:02,373 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:02,373 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:02,373 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:02,373 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:02,373 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:02,373 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:02,374 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:02,374 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:02,374 #include "..." search starts here: 2021-07-15T22:12:02,374 #include <...> search starts here: 2021-07-15T22:12:02,374 /usr/include/eigen3 2021-07-15T22:12:02,374 include 2021-07-15T22:12:02,375 /usr/include/python3.9 2021-07-15T22:12:02,375 /usr/include/c++/10 2021-07-15T22:12:02,375 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:02,375 /usr/include/c++/10/backward 2021-07-15T22:12:02,375 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:02,375 /usr/local/include 2021-07-15T22:12:02,376 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:02,376 /usr/include 2021-07-15T22:12:02,376 End of search list. 2021-07-15T22:12:02,376 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:02,376 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:02,376 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:02,390 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:03,878 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:03,879 from include/openbabel/mol.h:43, 2021-07-15T22:12:03,879 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:03,879 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:12:03,879 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:03,879 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:03,879 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:03,879 | ^ 2021-07-15T22:12:03,880 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:03,880 37 | # define UNUSED(x) x 2021-07-15T22:12:03,880 | ^ 2021-07-15T22:12:04,574 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:04,575 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:04,575 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:12:04,575 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,575 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,575 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:04,575 | ^ 2021-07-15T22:12:04,575 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:04,576 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:04,576 | ^~~~~~~~ 2021-07-15T22:12:04,579 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,580 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,580 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:04,580 | ^ 2021-07-15T22:12:04,580 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:04,580 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:04,580 | ^~~~~~~~ 2021-07-15T22:12:04,597 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,597 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,597 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:04,598 | ^ 2021-07-15T22:12:04,598 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:04,598 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:04,598 | ^~~~~~~~ 2021-07-15T22:12:04,603 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:04,603 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:04,603 from ./src/formats/fpsformat.cpp:19: 2021-07-15T22:12:04,603 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:04,604 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:04,604 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:04,604 | ^ 2021-07-15T22:12:04,604 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:04,604 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:04,604 | ^~~~~~~~ 2021-07-15T22:12:04,916 ./src/formats/fpsformat.cpp: In member function ‘virtual bool OpenBabel::FPSFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:04,917 ./src/formats/fpsformat.cpp:146:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:12:04,917 146 | for(unsigned i=0;i<(_nbits+31)/32;++i) 2021-07-15T22:12:04,917 | ~^~~~~~~~~~~~~~~ 2021-07-15T22:12:04,924 ./src/formats/fpsformat.cpp: In member function ‘std::string OpenBabel::FPSFormat::getTimeStr()’: 2021-07-15T22:12:04,924 ./src/formats/fpsformat.cpp:169:10: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:04,924 169 | size_t time_res; /* Result of strftime */ 2021-07-15T22:12:04,925 | ^~~~~~~~ 2021-07-15T22:12:07,936 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:07,937 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o /tmp/ccYiZcxX.s 2021-07-15T22:12:07,943 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:08,239 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:08,239 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:08,239 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/fpsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:08,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/freefracformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:08,252 Using built-in specs. 2021-07-15T22:12:08,254 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:08,254 Target: arm-linux-gnueabihf 2021-07-15T22:12:08,254 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:08,255 Thread model: posix 2021-07-15T22:12:08,255 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:08,255 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:08,256 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:08,259 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/freefracformat.cpp -quiet -dumpbase freefracformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccAk6jdd.s 2021-07-15T22:12:08,272 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:08,272 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:08,272 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:08,273 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:08,274 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:08,274 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:08,274 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:08,274 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:08,274 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:08,275 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:08,275 #include "..." search starts here: 2021-07-15T22:12:08,275 #include <...> search starts here: 2021-07-15T22:12:08,275 /usr/include/eigen3 2021-07-15T22:12:08,275 include 2021-07-15T22:12:08,276 /usr/include/python3.9 2021-07-15T22:12:08,276 /usr/include/c++/10 2021-07-15T22:12:08,276 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:08,276 /usr/include/c++/10/backward 2021-07-15T22:12:08,276 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:08,277 /usr/local/include 2021-07-15T22:12:08,277 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:08,277 /usr/include 2021-07-15T22:12:08,277 End of search list. 2021-07-15T22:12:08,278 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:08,278 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:08,279 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:08,296 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:09,658 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:09,658 from include/openbabel/mol.h:43, 2021-07-15T22:12:09,658 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:09,658 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:12:09,658 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:09,659 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:09,659 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:09,659 | ^ 2021-07-15T22:12:09,659 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:09,659 37 | # define UNUSED(x) x 2021-07-15T22:12:09,659 | ^ 2021-07-15T22:12:10,356 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:10,356 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:10,357 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:12:10,357 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:10,357 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:10,357 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:10,357 | ^ 2021-07-15T22:12:10,357 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:10,357 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:10,358 | ^~~~~~~~ 2021-07-15T22:12:10,361 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:10,362 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:10,362 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:10,362 | ^ 2021-07-15T22:12:10,362 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:10,362 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:10,362 | ^~~~~~~~ 2021-07-15T22:12:10,379 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:10,379 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:10,379 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:10,379 | ^ 2021-07-15T22:12:10,380 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:10,380 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:10,380 | ^~~~~~~~ 2021-07-15T22:12:10,385 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:10,385 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:10,385 from ./src/formats/freefracformat.cpp:16: 2021-07-15T22:12:10,385 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:10,385 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:10,386 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:10,386 | ^ 2021-07-15T22:12:10,386 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:10,386 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:10,386 | ^~~~~~~~ 2021-07-15T22:12:13,210 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:13,212 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o /tmp/ccAk6jdd.s 2021-07-15T22:12:13,218 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:13,475 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:13,475 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:13,475 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/freefracformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:13,478 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gamessformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:13,488 Using built-in specs. 2021-07-15T22:12:13,489 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:13,489 Target: arm-linux-gnueabihf 2021-07-15T22:12:13,489 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:13,490 Thread model: posix 2021-07-15T22:12:13,490 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:13,490 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:13,491 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:13,494 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gamessformat.cpp -quiet -dumpbase gamessformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccYDbUvr.s 2021-07-15T22:12:13,509 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:13,509 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:13,510 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:13,512 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:13,512 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:13,513 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:13,513 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:13,513 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:13,514 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:13,514 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:13,514 #include "..." search starts here: 2021-07-15T22:12:13,514 #include <...> search starts here: 2021-07-15T22:12:13,515 /usr/include/eigen3 2021-07-15T22:12:13,515 include 2021-07-15T22:12:13,515 /usr/include/python3.9 2021-07-15T22:12:13,515 /usr/include/c++/10 2021-07-15T22:12:13,515 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:13,515 /usr/include/c++/10/backward 2021-07-15T22:12:13,516 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:13,516 /usr/local/include 2021-07-15T22:12:13,516 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:13,516 /usr/include 2021-07-15T22:12:13,516 End of search list. 2021-07-15T22:12:13,518 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:13,518 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:13,518 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:13,536 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:14,911 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:14,911 from include/openbabel/mol.h:43, 2021-07-15T22:12:14,911 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:14,911 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:14,912 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:14,912 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:14,912 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:14,912 | ^ 2021-07-15T22:12:14,912 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:14,912 37 | # define UNUSED(x) x 2021-07-15T22:12:14,912 | ^ 2021-07-15T22:12:15,610 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:15,611 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:15,611 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:15,611 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:15,611 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:15,611 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:15,611 | ^ 2021-07-15T22:12:15,611 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:15,612 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:15,612 | ^~~~~~~~ 2021-07-15T22:12:15,615 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:15,615 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:15,615 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:15,616 | ^ 2021-07-15T22:12:15,616 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:15,616 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:15,616 | ^~~~~~~~ 2021-07-15T22:12:15,633 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:15,633 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:15,633 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:15,633 | ^ 2021-07-15T22:12:15,633 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:15,634 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:15,634 | ^~~~~~~~ 2021-07-15T22:12:15,639 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:15,639 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:15,639 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:15,639 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:15,639 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:15,639 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:15,639 | ^ 2021-07-15T22:12:15,640 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:15,640 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:15,640 | ^~~~~~~~ 2021-07-15T22:12:15,995 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:15,995 ./src/formats/gamessformat.cpp:227:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:15,995 227 | int ndummyatoms = 0; 2021-07-15T22:12:15,995 | ^~~~~~~~~~~ 2021-07-15T22:12:16,012 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:16,012 ./src/formats/gamessformat.cpp:995:14: warning: type qualifiers ignored on function return type [-Wignored-qualifiers] 2021-07-15T22:12:16,013 995 | static const bool cmpfn(const char& a, const char& b) { 2021-07-15T22:12:16,013 | ^~~~~ 2021-07-15T22:12:20,418 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:20,418 from include/openbabel/mol.h:35, 2021-07-15T22:12:20,418 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:20,418 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:20,418 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:20,419 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:20,419 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:20,419 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:20,537 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:20,537 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:20,585 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:12:20,585 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:23,997 ./src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:23,997 ./src/formats/gamessformat.cpp:520:58: warning: ‘lowFreqModesEnd’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:12:23,997 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) 2021-07-15T22:12:23,998 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:12:23,998 ./src/formats/gamessformat.cpp:520:25: warning: ‘lowFreqModesBegin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:12:23,998 520 | if (numIntens < lowFreqModesBegin || numIntens > lowFreqModesEnd) 2021-07-15T22:12:23,998 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,078 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:24,079 from include/openbabel/mol.h:35, 2021-07-15T22:12:24,079 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:24,079 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:24,079 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,079 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,079 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,080 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,080 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,080 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,081 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,083 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,083 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,083 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,085 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,085 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,085 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,086 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,086 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,086 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,086 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,087 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,087 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,088 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,089 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,089 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,089 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,089 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,089 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,090 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,090 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,090 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,093 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,093 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,093 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,093 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,094 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,094 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,094 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,098 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,098 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,098 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,099 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,099 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,099 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,100 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,100 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:24,100 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:24,102 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:24,102 from include/openbabel/mol.h:35, 2021-07-15T22:12:24,102 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:24,102 from ./src/formats/gamessformat.cpp:19: 2021-07-15T22:12:24,102 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,103 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,103 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,109 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,110 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,110 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,110 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,110 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,112 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,112 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,113 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,114 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,114 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,116 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,117 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,117 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,118 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,118 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,118 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,119 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,119 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,119 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,120 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,121 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,121 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:24,124 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:24,124 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:24,124 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:29,597 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:29,598 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o /tmp/ccYDbUvr.s 2021-07-15T22:12:29,602 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:30,831 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:30,831 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:30,831 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:30,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gamessukformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:30,848 Using built-in specs. 2021-07-15T22:12:30,849 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:30,849 Target: arm-linux-gnueabihf 2021-07-15T22:12:30,850 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:30,850 Thread model: posix 2021-07-15T22:12:30,850 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:30,850 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:30,851 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:30,854 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gamessukformat.cpp -quiet -dumpbase gamessukformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccVtdaOJ.s 2021-07-15T22:12:30,867 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:30,867 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:30,867 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:30,869 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:30,869 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:30,869 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:30,869 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:30,870 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:30,870 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:30,870 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:30,871 #include "..." search starts here: 2021-07-15T22:12:30,871 #include <...> search starts here: 2021-07-15T22:12:30,872 /usr/include/eigen3 2021-07-15T22:12:30,872 include 2021-07-15T22:12:30,872 /usr/include/python3.9 2021-07-15T22:12:30,872 /usr/include/c++/10 2021-07-15T22:12:30,872 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:30,872 /usr/include/c++/10/backward 2021-07-15T22:12:30,873 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:30,873 /usr/local/include 2021-07-15T22:12:30,873 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:30,873 /usr/include 2021-07-15T22:12:30,873 End of search list. 2021-07-15T22:12:30,875 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:30,875 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:30,875 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:30,891 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:32,261 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:32,261 from include/openbabel/mol.h:43, 2021-07-15T22:12:32,262 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:32,262 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:32,262 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:32,262 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:32,262 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:32,262 | ^ 2021-07-15T22:12:32,262 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:32,262 37 | # define UNUSED(x) x 2021-07-15T22:12:32,262 | ^ 2021-07-15T22:12:32,965 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:32,965 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:32,966 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:32,966 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:32,966 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:32,966 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:32,966 | ^ 2021-07-15T22:12:32,966 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:32,966 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:32,967 | ^~~~~~~~ 2021-07-15T22:12:32,970 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:32,971 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:32,971 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:32,971 | ^ 2021-07-15T22:12:32,971 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:32,971 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:32,971 | ^~~~~~~~ 2021-07-15T22:12:32,988 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:32,988 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:32,988 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:32,988 | ^ 2021-07-15T22:12:32,989 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:32,989 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:32,989 | ^~~~~~~~ 2021-07-15T22:12:32,994 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:32,994 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:32,994 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:32,994 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:32,995 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:32,995 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:32,995 | ^ 2021-07-15T22:12:32,995 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:32,995 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:32,995 | ^~~~~~~~ 2021-07-15T22:12:33,338 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadLineZmatrix(OpenBabel::OBMol&, OpenBabel::OBAtom*, std::vector >&, double, int*)’: 2021-07-15T22:12:33,338 ./src/formats/gamessukformat.cpp:307:97: warning: unused parameter ‘factor’ [-Wunused-parameter] 2021-07-15T22:12:33,338 307 | bool GAMESSUKFormat::ReadLineZmatrix(OBMol &mol, OBAtom *atom, vector &tokens, double factor, int *zmatLineCount) 2021-07-15T22:12:33,338 | ~~~~~~~^~~~~~ 2021-07-15T22:12:33,383 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadInitialCartesian(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:12:33,384 ./src/formats/gamessukformat.cpp:779:10: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:33,384 779 | bool ok=false; 2021-07-15T22:12:33,384 | ^~ 2021-07-15T22:12:33,386 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz1(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:12:33,387 ./src/formats/gamessukformat.cpp:845:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:33,387 845 | bool ok=false; 2021-07-15T22:12:33,387 | ^~ 2021-07-15T22:12:33,390 ./src/formats/gamessukformat.cpp: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadOptGeomXyz2(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:12:33,390 ./src/formats/gamessukformat.cpp:892:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:33,390 892 | bool ok=false; 2021-07-15T22:12:33,390 | ^~ 2021-07-15T22:12:33,417 ./src/formats/gamessukformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSUKOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:33,417 ./src/formats/gamessukformat.cpp:1207:12: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:12:33,418 1207 | bool ok; 2021-07-15T22:12:33,418 | ^~ 2021-07-15T22:12:39,470 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:39,470 from include/openbabel/mol.h:35, 2021-07-15T22:12:39,470 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:39,470 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:39,471 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:39,471 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:39,471 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:39,471 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:39,661 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:12:39,661 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:39,717 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:39,717 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:40,411 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesHessian(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:12:40,411 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:40,412 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:40,412 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:40,416 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:40,416 from include/openbabel/mol.h:35, 2021-07-15T22:12:40,416 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:40,416 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:40,416 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:40,416 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:40,417 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:40,417 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:40,417 from include/openbabel/mol.h:35, 2021-07-15T22:12:40,417 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:40,417 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:40,418 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:40,418 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:40,418 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:41,311 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesForce(OpenBabel::OBMol&, std::istream&)’: 2021-07-15T22:12:41,311 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:41,311 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:41,311 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:41,315 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:41,315 from include/openbabel/mol.h:35, 2021-07-15T22:12:41,315 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:41,315 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:41,316 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:41,316 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:41,316 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:41,316 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:41,316 from include/openbabel/mol.h:35, 2021-07-15T22:12:41,317 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:41,317 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:41,317 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:41,317 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:41,317 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,037 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:12:42,037 from include/openbabel/mol.h:37, 2021-07-15T22:12:42,037 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:42,038 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:42,038 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:12:42,038 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,038 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:12:42,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,152 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:12:42,153 from include/openbabel/mol.h:37, 2021-07-15T22:12:42,153 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:42,153 from ./src/formats/gamessukformat.cpp:14: 2021-07-15T22:12:42,153 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:12:42,153 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,153 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:12:42,153 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,153 502 | std::tuple(__k), 2021-07-15T22:12:42,154 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,154 503 | std::tuple<>()); 2021-07-15T22:12:42,154 | ~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,552 /usr/include/c++/10/bits/stl_map.h: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::string)’: 2021-07-15T22:12:42,552 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,552 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:12:42,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,552 502 | std::tuple(__k), 2021-07-15T22:12:42,552 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,552 503 | std::tuple<>()); 2021-07-15T22:12:42,553 | ~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,922 /usr/include/c++/10/bits/stl_map.h: In member function ‘bool OpenBabel::GAMESSUKFormat::ReadLineCartesian(OpenBabel::OBAtom*, std::vector >&, double)’: 2021-07-15T22:12:42,922 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,922 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:12:42,922 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,923 502 | std::tuple(__k), 2021-07-15T22:12:42,923 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,923 503 | std::tuple<>()); 2021-07-15T22:12:42,923 | ~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,926 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,926 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:12:42,926 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,926 502 | std::tuple(__k), 2021-07-15T22:12:42,926 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,926 503 | std::tuple<>()); 2021-07-15T22:12:42,927 | ~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,929 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:12:42,930 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:12:42,930 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,930 502 | std::tuple(__k), 2021-07-15T22:12:42,930 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:42,930 503 | std::tuple<>()); 2021-07-15T22:12:42,930 | ~~~~~~~~~~~~~~~ 2021-07-15T22:12:44,906 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:44,906 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o /tmp/ccVtdaOJ.s 2021-07-15T22:12:44,912 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:46,240 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:46,240 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:46,240 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gamessukformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:46,245 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gausscubeformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:46,254 Using built-in specs. 2021-07-15T22:12:46,255 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:46,256 Target: arm-linux-gnueabihf 2021-07-15T22:12:46,256 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:46,256 Thread model: posix 2021-07-15T22:12:46,256 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:46,257 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:46,257 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:46,257 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gausscubeformat.cpp -quiet -dumpbase gausscubeformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccEah8sZ.s 2021-07-15T22:12:46,269 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:46,270 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:46,270 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:46,270 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:46,270 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:46,270 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:46,271 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:46,271 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:46,271 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:46,272 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:46,272 #include "..." search starts here: 2021-07-15T22:12:46,272 #include <...> search starts here: 2021-07-15T22:12:46,272 /usr/include/eigen3 2021-07-15T22:12:46,272 include 2021-07-15T22:12:46,272 /usr/include/python3.9 2021-07-15T22:12:46,273 /usr/include/c++/10 2021-07-15T22:12:46,273 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:46,273 /usr/include/c++/10/backward 2021-07-15T22:12:46,273 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:46,273 /usr/local/include 2021-07-15T22:12:46,273 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:46,274 /usr/include 2021-07-15T22:12:46,274 End of search list. 2021-07-15T22:12:46,274 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:46,274 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:46,274 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:46,289 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:47,639 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:47,640 from include/openbabel/mol.h:43, 2021-07-15T22:12:47,640 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:47,640 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:12:47,640 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:47,640 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:47,641 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:47,641 | ^ 2021-07-15T22:12:47,641 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:47,641 37 | # define UNUSED(x) x 2021-07-15T22:12:47,641 | ^ 2021-07-15T22:12:48,337 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:48,337 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:48,338 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:12:48,338 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:48,338 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:48,338 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:48,338 | ^ 2021-07-15T22:12:48,338 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:48,339 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:48,339 | ^~~~~~~~ 2021-07-15T22:12:48,341 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:48,341 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:48,341 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:48,342 | ^ 2021-07-15T22:12:48,342 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:48,342 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:48,342 | ^~~~~~~~ 2021-07-15T22:12:48,358 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:48,358 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:48,358 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:48,358 | ^ 2021-07-15T22:12:48,358 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:48,358 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:48,359 | ^~~~~~~~ 2021-07-15T22:12:48,362 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:48,363 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:48,363 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:12:48,363 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:48,363 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:48,363 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:48,363 | ^ 2021-07-15T22:12:48,364 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:48,364 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:48,364 | ^~~~~~~~ 2021-07-15T22:12:48,651 ./src/formats/gausscubeformat.cpp: In member function ‘virtual int OpenBabel::OBGaussianCubeFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:12:48,652 ./src/formats/gausscubeformat.cpp:79:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:12:48,652 79 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:12:48,652 | ~~~~^ 2021-07-15T22:12:48,652 ./src/formats/gausscubeformat.cpp:79:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:12:48,653 79 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:12:48,653 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:12:48,727 ./src/formats/gausscubeformat.cpp: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:48,727 ./src/formats/gausscubeformat.cpp:425:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:12:48,728 425 | while (vgd.size() < nCubes) 2021-07-15T22:12:48,728 | ~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:12:48,736 ./src/formats/gausscubeformat.cpp:472:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:12:48,737 472 | while (values.size() < n*nCubes) 2021-07-15T22:12:48,737 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:12:48,757 ./src/formats/gausscubeformat.cpp:107:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:12:48,757 107 | const char* title = pConv->GetTitle(); 2021-07-15T22:12:48,758 | ^~~~~ 2021-07-15T22:12:52,040 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:12:52,040 from include/openbabel/mol.h:35, 2021-07-15T22:12:52,040 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:52,040 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:12:52,040 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:52,041 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:52,041 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:12:52,041 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:52,119 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:12:52,119 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:12:53,278 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:12:53,278 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:53,278 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:12:53,278 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:12:53,280 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:12:53,280 from include/openbabel/mol.h:35, 2021-07-15T22:12:53,280 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:12:53,280 from ./src/formats/gausscubeformat.cpp:28: 2021-07-15T22:12:53,280 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:12:53,281 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:12:53,281 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:12:56,760 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:56,760 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o /tmp/ccEah8sZ.s 2021-07-15T22:12:56,766 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:12:57,465 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:12:57,465 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:12:57,466 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausscubeformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:57,469 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gaussformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:12:57,478 Using built-in specs. 2021-07-15T22:12:57,479 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:12:57,479 Target: arm-linux-gnueabihf 2021-07-15T22:12:57,479 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:12:57,479 Thread model: posix 2021-07-15T22:12:57,480 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:12:57,480 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:12:57,480 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:12:57,480 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gaussformat.cpp -quiet -dumpbase gaussformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRTtpIf.s 2021-07-15T22:12:57,494 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:57,494 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:57,495 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:57,495 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:12:57,495 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:12:57,495 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:12:57,496 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:12:57,496 ignoring duplicate directory "/usr/include/" 2021-07-15T22:12:57,496 as it is a non-system directory that duplicates a system directory 2021-07-15T22:12:57,496 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:12:57,496 #include "..." search starts here: 2021-07-15T22:12:57,497 #include <...> search starts here: 2021-07-15T22:12:57,497 /usr/include/eigen3 2021-07-15T22:12:57,497 include 2021-07-15T22:12:57,497 /usr/include/python3.9 2021-07-15T22:12:57,497 /usr/include/c++/10 2021-07-15T22:12:57,497 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:12:57,498 /usr/include/c++/10/backward 2021-07-15T22:12:57,498 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:12:57,498 /usr/local/include 2021-07-15T22:12:57,498 /usr/include/arm-linux-gnueabihf 2021-07-15T22:12:57,498 /usr/include 2021-07-15T22:12:57,498 End of search list. 2021-07-15T22:12:57,499 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:12:57,499 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:12:57,499 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:12:57,513 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:12:58,978 In file included from include/openbabel/atom.h:33, 2021-07-15T22:12:58,978 from include/openbabel/mol.h:43, 2021-07-15T22:12:58,978 from include/openbabel/data_utilities.h:25, 2021-07-15T22:12:58,979 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:12:58,979 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:12:58,979 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:12:58,979 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:12:58,979 | ^ 2021-07-15T22:12:58,979 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:12:58,979 37 | # define UNUSED(x) x 2021-07-15T22:12:58,980 | ^ 2021-07-15T22:12:59,585 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:59,586 from include/openbabel/data_utilities.h:25, 2021-07-15T22:12:59,586 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:12:59,586 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:59,586 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:59,586 862 | {return new OBVibrationData(*this);} 2021-07-15T22:12:59,586 | ^ 2021-07-15T22:12:59,587 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:12:59,587 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:12:59,587 | ^~~~~~~~ 2021-07-15T22:12:59,589 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:59,589 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:59,589 907 | {return new OBDOSData(*this);} 2021-07-15T22:12:59,590 | ^ 2021-07-15T22:12:59,590 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:12:59,590 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:12:59,590 | ^~~~~~~~ 2021-07-15T22:12:59,605 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:59,606 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:59,606 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:12:59,606 | ^ 2021-07-15T22:12:59,606 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:12:59,606 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:12:59,606 | ^~~~~~~~ 2021-07-15T22:12:59,610 In file included from include/openbabel/mol.h:52, 2021-07-15T22:12:59,611 from include/openbabel/data_utilities.h:25, 2021-07-15T22:12:59,611 from ./src/formats/gaussformat.cpp:18: 2021-07-15T22:12:59,611 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:12:59,611 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:12:59,611 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:12:59,611 | ^ 2021-07-15T22:12:59,611 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:12:59,612 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:12:59,612 | ^~~~~~~~ 2021-07-15T22:12:59,935 ./src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OpenBabel::OBMol*, std::string, std::string, int)’: 2021-07-15T22:12:59,935 ./src/formats/gaussformat.cpp:275:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:12:59,935 275 | if (vs.size() >= start) 2021-07-15T22:12:59,936 | ~~~~~~~~~~^~~~~~~~ 2021-07-15T22:12:59,936 ./src/formats/gaussformat.cpp:278:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:12:59,936 278 | for(i=start+1; (i)’: 2021-07-15T22:12:59,942 ./src/formats/gaussformat.cpp:332:17: warning: unused variable ‘pg’ [-Wunused-variable] 2021-07-15T22:12:59,943 332 | const char *pg = obPG.IdentifyPointGroup(); 2021-07-15T22:12:59,943 | ^~ 2021-07-15T22:13:05,804 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:13:05,804 from include/openbabel/data.h:28, 2021-07-15T22:13:05,804 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:05,805 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:13:05,805 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:05,805 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:13:05,805 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:05,805 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:05,835 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:13:05,835 from include/openbabel/data.h:28, 2021-07-15T22:13:05,836 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:05,836 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:13:05,836 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:05,836 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:13:05,836 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:13:06,017 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:13:06,017 from include/openbabel/data.h:28, 2021-07-15T22:13:06,017 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:06,017 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:13:06,017 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:13:06,018 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:13:06,018 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,504 ./src/formats/gaussformat.cpp: In member function ‘virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:08,504 ./src/formats/gaussformat.cpp:1164:25: warning: ‘CV’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:08,505 1164 | extract_thermo(&mol,thermo_method,temperature,ezpe, 2021-07-15T22:13:08,505 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,505 1165 | Hcorr,Gcorr,E0,CV,RotSymNum,Scomponents); 2021-07-15T22:13:08,505 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,505 ./src/formats/gaussformat.cpp:1164:25: warning: ‘E0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:08,506 ./src/formats/gaussformat.cpp:1164:25: warning: ‘Gcorr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:08,507 ./src/formats/gaussformat.cpp:1164:25: warning: ‘Hcorr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:08,507 ./src/formats/gaussformat.cpp:1164:25: warning: ‘ezpe’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:08,602 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:13:08,603 from include/openbabel/data.h:28, 2021-07-15T22:13:08,603 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:08,603 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,603 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:13:08,603 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:13:08,603 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,604 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:13:08,604 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:13:08,604 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,604 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:13:08,604 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:13:08,619 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:13:08,620 from include/openbabel/data.h:28, 2021-07-15T22:13:08,620 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:08,620 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,620 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:08,620 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,621 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,621 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:08,621 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,621 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,621 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:13:08,621 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:08,641 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:13:08,641 from include/openbabel/data.h:28, 2021-07-15T22:13:08,641 from ./src/formats/gaussformat.cpp:17: 2021-07-15T22:13:08,641 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:13:08,641 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:13:08,641 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:13:15,006 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:15,007 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o /tmp/ccRTtpIf.s 2021-07-15T22:13:15,013 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:16,500 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:16,500 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:16,501 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gaussformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:16,511 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gausszmatformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:16,519 Using built-in specs. 2021-07-15T22:13:16,521 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:16,521 Target: arm-linux-gnueabihf 2021-07-15T22:13:16,521 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:16,521 Thread model: posix 2021-07-15T22:13:16,522 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:16,522 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:16,522 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:16,522 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gausszmatformat.cpp -quiet -dumpbase gausszmatformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccw3rNCQ.s 2021-07-15T22:13:16,535 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:16,535 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:16,536 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:16,536 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:16,536 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:16,536 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:16,536 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:16,537 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:16,537 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:16,537 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:16,537 #include "..." search starts here: 2021-07-15T22:13:16,537 #include <...> search starts here: 2021-07-15T22:13:16,537 /usr/include/eigen3 2021-07-15T22:13:16,538 include 2021-07-15T22:13:16,538 /usr/include/python3.9 2021-07-15T22:13:16,538 /usr/include/c++/10 2021-07-15T22:13:16,538 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:16,538 /usr/include/c++/10/backward 2021-07-15T22:13:16,538 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:16,538 /usr/local/include 2021-07-15T22:13:16,539 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:16,539 /usr/include 2021-07-15T22:13:16,539 End of search list. 2021-07-15T22:13:16,539 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:16,539 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:16,540 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:16,553 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:17,929 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:17,929 from include/openbabel/mol.h:43, 2021-07-15T22:13:17,929 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:17,929 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:13:17,929 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:17,930 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:17,930 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:17,930 | ^ 2021-07-15T22:13:17,930 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:17,930 37 | # define UNUSED(x) x 2021-07-15T22:13:17,930 | ^ 2021-07-15T22:13:18,627 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:18,627 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:18,627 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:13:18,627 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,627 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,627 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:18,628 | ^ 2021-07-15T22:13:18,628 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:18,628 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:18,628 | ^~~~~~~~ 2021-07-15T22:13:18,630 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,631 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,631 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:18,631 | ^ 2021-07-15T22:13:18,631 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:18,631 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:18,631 | ^~~~~~~~ 2021-07-15T22:13:18,647 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,647 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,647 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:18,647 | ^ 2021-07-15T22:13:18,648 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:18,648 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:18,648 | ^~~~~~~~ 2021-07-15T22:13:18,652 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:18,652 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:18,652 from ./src/formats/gausszmatformat.cpp:16: 2021-07-15T22:13:18,652 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:18,652 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:18,652 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:18,653 | ^ 2021-07-15T22:13:18,653 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:18,653 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:18,653 | ^~~~~~~~ 2021-07-15T22:13:23,713 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:23,713 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o /tmp/ccw3rNCQ.s 2021-07-15T22:13:23,718 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:24,172 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:24,172 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:24,172 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gausszmatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:24,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/genbankformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:24,183 Using built-in specs. 2021-07-15T22:13:24,185 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:24,185 Target: arm-linux-gnueabihf 2021-07-15T22:13:24,185 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:24,185 Thread model: posix 2021-07-15T22:13:24,185 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:24,186 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:24,186 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:24,186 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/genbankformat.cpp -quiet -dumpbase genbankformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqP7yP3.s 2021-07-15T22:13:24,199 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:24,199 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:24,199 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:24,200 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:24,200 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:24,200 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:24,200 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:24,200 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:24,200 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:24,201 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:24,201 #include "..." search starts here: 2021-07-15T22:13:24,201 #include <...> search starts here: 2021-07-15T22:13:24,201 /usr/include/eigen3 2021-07-15T22:13:24,201 include 2021-07-15T22:13:24,202 /usr/include/python3.9 2021-07-15T22:13:24,202 /usr/include/c++/10 2021-07-15T22:13:24,202 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:24,202 /usr/include/c++/10/backward 2021-07-15T22:13:24,202 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:24,202 /usr/local/include 2021-07-15T22:13:24,202 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:24,203 /usr/include 2021-07-15T22:13:24,203 End of search list. 2021-07-15T22:13:24,203 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:24,203 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:24,203 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:24,217 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:25,578 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:25,579 from include/openbabel/mol.h:43, 2021-07-15T22:13:25,579 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:25,579 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:13:25,579 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:25,579 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:25,579 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:25,580 | ^ 2021-07-15T22:13:25,580 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:25,580 37 | # define UNUSED(x) x 2021-07-15T22:13:25,580 | ^ 2021-07-15T22:13:26,503 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:26,503 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:26,503 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:13:26,504 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:26,504 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:26,504 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:26,504 | ^ 2021-07-15T22:13:26,504 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:26,504 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:26,504 | ^~~~~~~~ 2021-07-15T22:13:26,507 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:26,507 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:26,507 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:26,507 | ^ 2021-07-15T22:13:26,507 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:26,508 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:26,508 | ^~~~~~~~ 2021-07-15T22:13:26,523 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:26,523 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:26,524 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:26,524 | ^ 2021-07-15T22:13:26,524 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:26,524 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:26,524 | ^~~~~~~~ 2021-07-15T22:13:26,528 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:26,528 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:26,528 from ./src/formats/genbankformat.cpp:19: 2021-07-15T22:13:26,529 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:26,529 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:26,529 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:26,529 | ^ 2021-07-15T22:13:26,529 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:26,529 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:26,529 | ^~~~~~~~ 2021-07-15T22:13:28,940 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:28,940 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o /tmp/ccqP7yP3.s 2021-07-15T22:13:28,945 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:29,143 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:29,143 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:29,144 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/genbankformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:29,145 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/ghemicalformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:29,154 Using built-in specs. 2021-07-15T22:13:29,155 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:29,156 Target: arm-linux-gnueabihf 2021-07-15T22:13:29,156 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:29,156 Thread model: posix 2021-07-15T22:13:29,156 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:29,157 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:29,158 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:29,161 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/ghemicalformat.cpp -quiet -dumpbase ghemicalformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccMScMIz.s 2021-07-15T22:13:29,174 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:29,174 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:29,175 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:29,175 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:29,175 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:29,175 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:29,175 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:29,176 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:29,176 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:29,176 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:29,176 #include "..." search starts here: 2021-07-15T22:13:29,176 #include <...> search starts here: 2021-07-15T22:13:29,176 /usr/include/eigen3 2021-07-15T22:13:29,177 include 2021-07-15T22:13:29,177 /usr/include/python3.9 2021-07-15T22:13:29,177 /usr/include/c++/10 2021-07-15T22:13:29,177 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:29,177 /usr/include/c++/10/backward 2021-07-15T22:13:29,177 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:29,178 /usr/local/include 2021-07-15T22:13:29,178 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:29,178 /usr/include 2021-07-15T22:13:29,178 End of search list. 2021-07-15T22:13:29,178 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:29,179 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:29,179 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:29,195 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:30,584 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:30,585 from include/openbabel/mol.h:43, 2021-07-15T22:13:30,585 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:30,585 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:13:30,585 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:30,585 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:30,586 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:30,586 | ^ 2021-07-15T22:13:30,586 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:30,586 37 | # define UNUSED(x) x 2021-07-15T22:13:30,586 | ^ 2021-07-15T22:13:31,278 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:31,278 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:31,278 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:13:31,278 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:31,278 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:31,278 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:31,279 | ^ 2021-07-15T22:13:31,279 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:31,279 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:31,279 | ^~~~~~~~ 2021-07-15T22:13:31,281 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:31,281 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:31,282 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:31,282 | ^ 2021-07-15T22:13:31,282 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:31,282 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:31,282 | ^~~~~~~~ 2021-07-15T22:13:31,298 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:31,298 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:31,298 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:31,298 | ^ 2021-07-15T22:13:31,298 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:31,299 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:31,299 | ^~~~~~~~ 2021-07-15T22:13:31,302 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:31,303 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:31,303 from ./src/formats/ghemicalformat.cpp:17: 2021-07-15T22:13:31,303 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:31,303 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:31,303 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:31,303 | ^ 2021-07-15T22:13:31,304 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:31,304 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:31,304 | ^~~~~~~~ 2021-07-15T22:13:34,329 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:34,329 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o /tmp/ccMScMIz.s 2021-07-15T22:13:34,335 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:34,602 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:34,603 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:34,603 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/ghemicalformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:34,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/groformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/groformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:34,613 Using built-in specs. 2021-07-15T22:13:34,614 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:34,614 Target: arm-linux-gnueabihf 2021-07-15T22:13:34,615 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:34,615 Thread model: posix 2021-07-15T22:13:34,615 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:34,615 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:34,615 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:34,616 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/groformat.cpp -quiet -dumpbase groformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/groformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccAoOkfL.s 2021-07-15T22:13:34,627 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:34,627 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:34,628 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:34,629 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:34,629 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:34,630 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:34,630 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:34,630 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:34,630 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:34,631 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:34,631 #include "..." search starts here: 2021-07-15T22:13:34,631 #include <...> search starts here: 2021-07-15T22:13:34,631 /usr/include/eigen3 2021-07-15T22:13:34,631 include 2021-07-15T22:13:34,632 /usr/include/python3.9 2021-07-15T22:13:34,632 /usr/include/c++/10 2021-07-15T22:13:34,632 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:34,632 /usr/include/c++/10/backward 2021-07-15T22:13:34,632 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:34,632 /usr/local/include 2021-07-15T22:13:34,633 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:34,633 /usr/include 2021-07-15T22:13:34,633 End of search list. 2021-07-15T22:13:34,633 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:34,633 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:34,634 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:34,648 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:36,043 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:36,043 from include/openbabel/mol.h:43, 2021-07-15T22:13:36,043 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:36,043 from ./src/formats/groformat.cpp:16: 2021-07-15T22:13:36,043 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:36,044 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:36,044 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:36,044 | ^ 2021-07-15T22:13:36,044 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:36,044 37 | # define UNUSED(x) x 2021-07-15T22:13:36,044 | ^ 2021-07-15T22:13:36,741 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:36,741 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:36,741 from ./src/formats/groformat.cpp:16: 2021-07-15T22:13:36,741 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:36,741 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:36,742 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:36,742 | ^ 2021-07-15T22:13:36,742 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:36,742 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:36,742 | ^~~~~~~~ 2021-07-15T22:13:36,744 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:36,745 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:36,745 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:36,745 | ^ 2021-07-15T22:13:36,745 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:36,745 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:36,745 | ^~~~~~~~ 2021-07-15T22:13:36,761 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:36,761 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:36,761 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:36,762 | ^ 2021-07-15T22:13:36,762 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:36,762 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:36,762 | ^~~~~~~~ 2021-07-15T22:13:36,766 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:36,766 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:36,766 from ./src/formats/groformat.cpp:16: 2021-07-15T22:13:36,766 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:36,766 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:36,767 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:36,767 | ^ 2021-07-15T22:13:36,767 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:36,767 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:36,767 | ^~~~~~~~ 2021-07-15T22:13:40,391 ./src/formats/groformat.cpp: In member function ‘virtual bool OpenBabel::GROFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:13:40,391 ./src/formats/groformat.cpp:273:19: warning: ‘res’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:13:40,392 273 | res->AddAtom(atom); 2021-07-15T22:13:40,392 | ~~~~~~~~~~~~^~~~~~ 2021-07-15T22:13:42,054 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:42,054 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/groformat.o /tmp/ccAoOkfL.s 2021-07-15T22:13:42,059 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:42,530 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:42,531 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:42,531 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/groformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:42,533 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gromos96format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:42,543 Using built-in specs. 2021-07-15T22:13:42,544 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:42,544 Target: arm-linux-gnueabihf 2021-07-15T22:13:42,544 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:42,545 Thread model: posix 2021-07-15T22:13:42,545 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:42,545 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:42,545 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:42,545 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gromos96format.cpp -quiet -dumpbase gromos96format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccg3nsa0.s 2021-07-15T22:13:42,557 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:42,558 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:42,558 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:42,558 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:42,559 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:42,559 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:42,559 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:42,559 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:42,560 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:42,560 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:42,560 #include "..." search starts here: 2021-07-15T22:13:42,560 #include <...> search starts here: 2021-07-15T22:13:42,560 /usr/include/eigen3 2021-07-15T22:13:42,561 include 2021-07-15T22:13:42,561 /usr/include/python3.9 2021-07-15T22:13:42,561 /usr/include/c++/10 2021-07-15T22:13:42,561 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:42,561 /usr/include/c++/10/backward 2021-07-15T22:13:42,561 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:42,562 /usr/local/include 2021-07-15T22:13:42,562 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:42,562 /usr/include 2021-07-15T22:13:42,562 End of search list. 2021-07-15T22:13:42,562 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:42,563 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:42,563 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:42,578 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:43,935 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:43,935 from include/openbabel/mol.h:43, 2021-07-15T22:13:43,936 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:43,936 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:13:43,936 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:43,936 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:43,936 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:43,936 | ^ 2021-07-15T22:13:43,936 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:43,937 37 | # define UNUSED(x) x 2021-07-15T22:13:43,937 | ^ 2021-07-15T22:13:44,632 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:44,632 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:44,632 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:13:44,633 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:44,633 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:44,633 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:44,633 | ^ 2021-07-15T22:13:44,633 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:44,633 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:44,634 | ^~~~~~~~ 2021-07-15T22:13:44,636 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:44,636 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:44,636 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:44,636 | ^ 2021-07-15T22:13:44,636 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:44,637 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:44,637 | ^~~~~~~~ 2021-07-15T22:13:44,652 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:44,653 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:44,653 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:44,653 | ^ 2021-07-15T22:13:44,653 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:44,653 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:44,653 | ^~~~~~~~ 2021-07-15T22:13:44,657 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:44,657 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:44,657 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:13:44,658 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:44,658 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:44,658 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:44,658 | ^ 2021-07-15T22:13:44,658 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:44,658 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:44,659 | ^~~~~~~~ 2021-07-15T22:13:46,437 In file included from /usr/include/string.h:495, 2021-07-15T22:13:46,438 from /usr/include/c++/10/cstring:42, 2021-07-15T22:13:46,438 from include/openbabel/data.h:26, 2021-07-15T22:13:46,438 from include/openbabel/mol.h:46, 2021-07-15T22:13:46,438 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:46,438 from ./src/formats/gromos96format.cpp:54: 2021-07-15T22:13:46,438 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:13:46,439 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:140:20: 2021-07-15T22:13:46,439 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:13:46,439 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:13:46,439 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:46,439 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:13:46,439 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:132:20: 2021-07-15T22:13:46,439 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:13:46,439 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:13:46,440 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:46,440 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:13:46,440 inlined from ‘virtual bool OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/gromos96format.cpp:134:20: 2021-07-15T22:13:46,440 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 2021-07-15T22:13:46,440 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:13:46,440 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:13:47,082 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:47,082 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o /tmp/ccg3nsa0.s 2021-07-15T22:13:47,089 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:47,285 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:47,285 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:47,285 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gromos96format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:47,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/gulpformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:47,297 Using built-in specs. 2021-07-15T22:13:47,298 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:47,298 Target: arm-linux-gnueabihf 2021-07-15T22:13:47,298 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:47,299 Thread model: posix 2021-07-15T22:13:47,299 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:47,299 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:47,299 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:47,299 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/gulpformat.cpp -quiet -dumpbase gulpformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccuBAbff.s 2021-07-15T22:13:47,311 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:47,312 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:47,312 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:47,312 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:47,312 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:47,313 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:47,313 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:47,313 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:47,313 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:47,313 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:47,313 #include "..." search starts here: 2021-07-15T22:13:47,314 #include <...> search starts here: 2021-07-15T22:13:47,314 /usr/include/eigen3 2021-07-15T22:13:47,314 include 2021-07-15T22:13:47,314 /usr/include/python3.9 2021-07-15T22:13:47,314 /usr/include/c++/10 2021-07-15T22:13:47,314 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:47,314 /usr/include/c++/10/backward 2021-07-15T22:13:47,315 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:47,315 /usr/local/include 2021-07-15T22:13:47,315 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:47,315 /usr/include 2021-07-15T22:13:47,315 End of search list. 2021-07-15T22:13:47,315 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:47,315 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:47,316 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:47,330 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:48,692 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:48,692 from include/openbabel/mol.h:43, 2021-07-15T22:13:48,692 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:48,692 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:13:48,692 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:48,693 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:48,693 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:48,693 | ^ 2021-07-15T22:13:48,693 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:48,693 37 | # define UNUSED(x) x 2021-07-15T22:13:48,693 | ^ 2021-07-15T22:13:49,388 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:49,388 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:49,388 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:13:49,388 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:49,388 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:49,389 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:49,389 | ^ 2021-07-15T22:13:49,389 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:49,389 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:49,389 | ^~~~~~~~ 2021-07-15T22:13:49,392 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:49,392 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:49,392 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:49,392 | ^ 2021-07-15T22:13:49,392 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:49,392 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:49,393 | ^~~~~~~~ 2021-07-15T22:13:49,408 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:49,408 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:49,409 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:49,409 | ^ 2021-07-15T22:13:49,409 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:49,409 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:49,409 | ^~~~~~~~ 2021-07-15T22:13:49,413 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:49,413 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:49,413 from ./src/formats/gulpformat.cpp:16: 2021-07-15T22:13:49,413 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:49,414 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:49,414 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:49,414 | ^ 2021-07-15T22:13:49,414 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:49,414 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:49,414 | ^~~~~~~~ 2021-07-15T22:13:49,699 ./src/formats/gulpformat.cpp: In member function ‘virtual int OpenBabel::GULPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:13:49,700 ./src/formats/gulpformat.cpp:49:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:13:49,700 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:13:49,700 | ~~~~^ 2021-07-15T22:13:49,700 ./src/formats/gulpformat.cpp:49:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:13:49,700 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:13:49,701 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:13:53,356 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:53,356 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o /tmp/ccuBAbff.s 2021-07-15T22:13:53,362 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:53,686 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:53,687 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:53,687 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/gulpformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:53,689 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/hinformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/hinformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:53,698 Using built-in specs. 2021-07-15T22:13:53,700 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:53,700 Target: arm-linux-gnueabihf 2021-07-15T22:13:53,700 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:53,700 Thread model: posix 2021-07-15T22:13:53,701 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:53,701 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:53,701 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:53,701 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/hinformat.cpp -quiet -dumpbase hinformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/hinformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchdnmRr.s 2021-07-15T22:13:53,714 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:53,715 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:53,715 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:53,716 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:53,716 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:53,716 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:53,716 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:53,716 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:53,717 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:53,717 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:53,717 #include "..." search starts here: 2021-07-15T22:13:53,717 #include <...> search starts here: 2021-07-15T22:13:53,717 /usr/include/eigen3 2021-07-15T22:13:53,718 include 2021-07-15T22:13:53,718 /usr/include/python3.9 2021-07-15T22:13:53,718 /usr/include/c++/10 2021-07-15T22:13:53,718 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:53,718 /usr/include/c++/10/backward 2021-07-15T22:13:53,718 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:53,718 /usr/local/include 2021-07-15T22:13:53,719 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:53,719 /usr/include 2021-07-15T22:13:53,719 End of search list. 2021-07-15T22:13:53,719 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:53,719 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:53,720 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:53,736 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:13:55,119 In file included from include/openbabel/atom.h:33, 2021-07-15T22:13:55,119 from include/openbabel/mol.h:43, 2021-07-15T22:13:55,119 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:55,119 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:13:55,119 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:13:55,119 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:13:55,120 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:13:55,120 | ^ 2021-07-15T22:13:55,120 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:13:55,120 37 | # define UNUSED(x) x 2021-07-15T22:13:55,120 | ^ 2021-07-15T22:13:55,819 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:55,819 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:55,819 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:13:55,819 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:55,819 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:55,819 862 | {return new OBVibrationData(*this);} 2021-07-15T22:13:55,820 | ^ 2021-07-15T22:13:55,820 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:13:55,820 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:13:55,820 | ^~~~~~~~ 2021-07-15T22:13:55,822 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:55,823 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:55,823 907 | {return new OBDOSData(*this);} 2021-07-15T22:13:55,823 | ^ 2021-07-15T22:13:55,823 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:13:55,823 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:13:55,823 | ^~~~~~~~ 2021-07-15T22:13:55,839 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:55,839 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:55,839 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:13:55,839 | ^ 2021-07-15T22:13:55,840 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:13:55,840 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:13:55,840 | ^~~~~~~~ 2021-07-15T22:13:55,844 In file included from include/openbabel/mol.h:52, 2021-07-15T22:13:55,844 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:13:55,844 from ./src/formats/hinformat.cpp:17: 2021-07-15T22:13:55,844 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:13:55,844 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:13:55,845 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:13:55,845 | ^ 2021-07-15T22:13:55,845 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:13:55,845 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:13:55,845 | ^~~~~~~~ 2021-07-15T22:13:58,536 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:58,536 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/hinformat.o /tmp/cchdnmRr.s 2021-07-15T22:13:58,541 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:13:58,764 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:13:58,765 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:13:58,765 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/hinformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:58,766 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/jaguarformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:13:58,775 Using built-in specs. 2021-07-15T22:13:58,777 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:13:58,777 Target: arm-linux-gnueabihf 2021-07-15T22:13:58,777 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:13:58,777 Thread model: posix 2021-07-15T22:13:58,778 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:13:58,778 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:13:58,779 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:13:58,782 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/jaguarformat.cpp -quiet -dumpbase jaguarformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc2K6mTG.s 2021-07-15T22:13:58,795 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:58,795 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:58,796 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:58,796 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:13:58,796 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:13:58,796 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:13:58,796 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:13:58,796 ignoring duplicate directory "/usr/include/" 2021-07-15T22:13:58,797 as it is a non-system directory that duplicates a system directory 2021-07-15T22:13:58,797 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:13:58,797 #include "..." search starts here: 2021-07-15T22:13:58,797 #include <...> search starts here: 2021-07-15T22:13:58,797 /usr/include/eigen3 2021-07-15T22:13:58,797 include 2021-07-15T22:13:58,798 /usr/include/python3.9 2021-07-15T22:13:58,798 /usr/include/c++/10 2021-07-15T22:13:58,798 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:13:58,798 /usr/include/c++/10/backward 2021-07-15T22:13:58,798 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:13:58,798 /usr/local/include 2021-07-15T22:13:58,799 /usr/include/arm-linux-gnueabihf 2021-07-15T22:13:58,799 /usr/include 2021-07-15T22:13:58,799 End of search list. 2021-07-15T22:13:58,799 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:13:58,799 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:13:58,800 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:13:58,814 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:00,166 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:00,167 from include/openbabel/mol.h:43, 2021-07-15T22:14:00,167 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:00,167 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:14:00,167 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:00,167 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:00,167 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:00,168 | ^ 2021-07-15T22:14:00,168 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:00,168 37 | # define UNUSED(x) x 2021-07-15T22:14:00,168 | ^ 2021-07-15T22:14:00,859 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:00,859 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:00,859 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:14:00,860 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:00,860 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:00,860 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:00,860 | ^ 2021-07-15T22:14:00,860 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:00,860 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:00,861 | ^~~~~~~~ 2021-07-15T22:14:00,863 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:00,863 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:00,863 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:00,863 | ^ 2021-07-15T22:14:00,864 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:00,864 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:00,864 | ^~~~~~~~ 2021-07-15T22:14:00,879 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:00,880 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:00,880 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:00,880 | ^ 2021-07-15T22:14:00,880 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:00,880 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:00,880 | ^~~~~~~~ 2021-07-15T22:14:00,884 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:00,884 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:00,885 from ./src/formats/jaguarformat.cpp:17: 2021-07-15T22:14:00,885 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:00,885 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:00,885 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:00,885 | ^ 2021-07-15T22:14:00,885 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:00,885 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:00,886 | ^~~~~~~~ 2021-07-15T22:14:04,213 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:04,213 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o /tmp/cc2K6mTG.s 2021-07-15T22:14:04,218 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:04,500 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:04,500 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:04,501 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/jaguarformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:04,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/lmpdatformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:04,515 Using built-in specs. 2021-07-15T22:14:04,516 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:04,516 Target: arm-linux-gnueabihf 2021-07-15T22:14:04,517 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:04,517 Thread model: posix 2021-07-15T22:14:04,517 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:04,517 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:04,517 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:04,518 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/lmpdatformat.cpp -quiet -dumpbase lmpdatformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccITypo7.s 2021-07-15T22:14:04,531 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:04,531 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:04,532 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:04,532 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:04,532 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:04,532 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:04,533 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:04,533 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:04,533 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:04,533 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:04,533 #include "..." search starts here: 2021-07-15T22:14:04,533 #include <...> search starts here: 2021-07-15T22:14:04,534 /usr/include/eigen3 2021-07-15T22:14:04,534 include 2021-07-15T22:14:04,534 /usr/include/python3.9 2021-07-15T22:14:04,534 /usr/include/c++/10 2021-07-15T22:14:04,534 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:04,534 /usr/include/c++/10/backward 2021-07-15T22:14:04,535 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:04,535 /usr/local/include 2021-07-15T22:14:04,535 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:04,535 /usr/include 2021-07-15T22:14:04,535 End of search list. 2021-07-15T22:14:04,536 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:04,536 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:04,536 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:04,550 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:05,907 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:05,907 from include/openbabel/mol.h:43, 2021-07-15T22:14:05,907 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:05,907 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:14:05,908 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:05,908 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:05,908 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:05,908 | ^ 2021-07-15T22:14:05,908 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:05,908 37 | # define UNUSED(x) x 2021-07-15T22:14:05,908 | ^ 2021-07-15T22:14:06,601 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:06,601 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:06,601 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:14:06,601 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:06,601 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:06,602 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:06,602 | ^ 2021-07-15T22:14:06,602 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:06,602 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:06,602 | ^~~~~~~~ 2021-07-15T22:14:06,604 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:06,605 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:06,605 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:06,605 | ^ 2021-07-15T22:14:06,605 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:06,605 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:06,605 | ^~~~~~~~ 2021-07-15T22:14:06,621 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:06,621 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:06,621 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:06,621 | ^ 2021-07-15T22:14:06,622 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:06,622 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:06,622 | ^~~~~~~~ 2021-07-15T22:14:06,626 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:06,626 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:06,626 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:14:06,626 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:06,626 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:06,626 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:06,627 | ^ 2021-07-15T22:14:06,627 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:06,627 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:06,627 | ^~~~~~~~ 2021-07-15T22:14:06,978 ./src/formats/lmpdatformat.cpp: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:06,978 ./src/formats/lmpdatformat.cpp:271:13: warning: unused variable ‘length’ [-Wunused-variable] 2021-07-15T22:14:06,978 271 | double length=cmax-cmin; 2021-07-15T22:14:06,978 | ^~~~~~ 2021-07-15T22:14:07,012 ./src/formats/lmpdatformat.cpp:361:11: warning: unused variable ‘atomid’ [-Wunused-variable] 2021-07-15T22:14:07,013 361 | int atomid=5; 2021-07-15T22:14:07,013 | ^~~~~~ 2021-07-15T22:14:07,013 ./src/formats/lmpdatformat.cpp:362:14: warning: unused variable ‘charge’ [-Wunused-variable] 2021-07-15T22:14:07,013 362 | double charge=0.5; 2021-07-15T22:14:07,013 | ^~~~~~ 2021-07-15T22:14:09,968 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:14:09,968 from include/openbabel/mol.h:37, 2021-07-15T22:14:09,969 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:09,969 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:14:09,970 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:14:09,970 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:09,970 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:14:09,970 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:10,084 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:14:10,085 from include/openbabel/mol.h:37, 2021-07-15T22:14:10,085 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:10,085 from ./src/formats/lmpdatformat.cpp:15: 2021-07-15T22:14:10,085 /usr/include/c++/10/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:14:10,085 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:10,085 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:10,085 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:10,085 502 | std::tuple(__k), 2021-07-15T22:14:10,086 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:10,086 503 | std::tuple<>()); 2021-07-15T22:14:10,086 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,264 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:11,264 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:11,264 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:11,265 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,265 502 | std::tuple(__k), 2021-07-15T22:14:11,265 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,265 503 | std::tuple<>()); 2021-07-15T22:14:11,265 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,283 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:11,283 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:11,283 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,283 502 | std::tuple(__k), 2021-07-15T22:14:11,283 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:11,284 503 | std::tuple<>()); 2021-07-15T22:14:11,284 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:14,185 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:14,185 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o /tmp/ccITypo7.s 2021-07-15T22:14:14,191 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:14,846 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:14,847 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:14,847 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lmpdatformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:14,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/lpmdformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:14,860 Using built-in specs. 2021-07-15T22:14:14,861 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:14,861 Target: arm-linux-gnueabihf 2021-07-15T22:14:14,862 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:14,862 Thread model: posix 2021-07-15T22:14:14,862 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:14,862 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:14,862 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:14,863 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/lpmdformat.cpp -quiet -dumpbase lpmdformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTWlI8t.s 2021-07-15T22:14:14,875 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:14,875 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:14,876 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:14,876 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:14,876 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:14,876 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:14,877 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:14,877 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:14,877 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:14,878 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:14,878 #include "..." search starts here: 2021-07-15T22:14:14,878 #include <...> search starts here: 2021-07-15T22:14:14,878 /usr/include/eigen3 2021-07-15T22:14:14,878 include 2021-07-15T22:14:14,878 /usr/include/python3.9 2021-07-15T22:14:14,879 /usr/include/c++/10 2021-07-15T22:14:14,879 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:14,879 /usr/include/c++/10/backward 2021-07-15T22:14:14,879 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:14,879 /usr/local/include 2021-07-15T22:14:14,879 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:14,880 /usr/include 2021-07-15T22:14:14,880 End of search list. 2021-07-15T22:14:14,880 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:14,880 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:14,880 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:14,896 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:16,500 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:16,500 from include/openbabel/mol.h:43, 2021-07-15T22:14:16,500 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:16,500 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:14:16,500 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:16,500 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:16,501 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:16,501 | ^ 2021-07-15T22:14:16,501 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:16,501 37 | # define UNUSED(x) x 2021-07-15T22:14:16,501 | ^ 2021-07-15T22:14:17,200 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:17,200 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:17,201 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:14:17,201 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:17,201 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:17,201 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:17,201 | ^ 2021-07-15T22:14:17,201 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:17,201 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:17,202 | ^~~~~~~~ 2021-07-15T22:14:17,205 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:17,206 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:17,206 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:17,206 | ^ 2021-07-15T22:14:17,206 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:17,206 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:17,206 | ^~~~~~~~ 2021-07-15T22:14:17,223 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:17,223 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:17,223 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:17,224 | ^ 2021-07-15T22:14:17,224 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:17,224 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:17,224 | ^~~~~~~~ 2021-07-15T22:14:17,229 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:17,229 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:17,229 from ./src/formats/lpmdformat.cpp:15: 2021-07-15T22:14:17,229 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:17,230 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:17,230 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:17,230 | ^ 2021-07-15T22:14:17,230 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:17,230 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:17,230 | ^~~~~~~~ 2021-07-15T22:14:17,534 ./src/formats/lpmdformat.cpp: In member function ‘virtual int OpenBabel::LpmdFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:14:17,534 ./src/formats/lpmdformat.cpp:56:31: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:14:17,534 56 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:17,534 | ~~~~^ 2021-07-15T22:14:17,535 ./src/formats/lpmdformat.cpp:56:48: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:17,535 56 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:17,535 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:17,540 ./src/formats/lpmdformat.cpp: In member function ‘bool OpenBabel::LpmdFormat::ReadHeader(std::istream&, OpenBabel::OBMol&)’: 2021-07-15T22:14:17,541 ./src/formats/lpmdformat.cpp:91:56: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:14:17,541 91 | bool LpmdFormat::ReadHeader( std::istream &ifs, OBMol &mol ) 2021-07-15T22:14:17,541 | ~~~~~~~^~~ 2021-07-15T22:14:17,546 ./src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:17,546 ./src/formats/lpmdformat.cpp:190:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:17,546 190 | if(int(headers.size()-1)!=tokens.size()) 2021-07-15T22:14:17,546 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-15T22:14:17,551 ./src/formats/lpmdformat.cpp:204:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:17,551 204 | for(int i=1 ; i < headers.size() ; ++i) //the first element is HDR 2021-07-15T22:14:17,551 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:14:17,556 ./src/formats/lpmdformat.cpp:237:11: warning: unused variable ‘FX’ [-Wunused-variable] 2021-07-15T22:14:17,557 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:14:17,557 | ^~ 2021-07-15T22:14:17,557 ./src/formats/lpmdformat.cpp:237:32: warning: unused variable ‘FY’ [-Wunused-variable] 2021-07-15T22:14:17,557 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:14:17,557 | ^~ 2021-07-15T22:14:17,557 ./src/formats/lpmdformat.cpp:237:53: warning: unused variable ‘FZ’ [-Wunused-variable] 2021-07-15T22:14:17,558 237 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; 2021-07-15T22:14:17,558 | ^~ 2021-07-15T22:14:17,574 ./src/formats/lpmdformat.cpp: In member function ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:17,575 ./src/formats/lpmdformat.cpp:360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:14:17,575 360 | for(int i=0; i < mol.NumAtoms() ; ++i) 2021-07-15T22:14:17,575 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:14:17,577 ./src/formats/lpmdformat.cpp:376:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:14:17,577 376 | for(int i=0;i::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:14:20,750 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:14:20,751 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:14:20,751 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:20,796 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:14:20,797 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:20,797 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:20,797 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,874 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:23,874 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,875 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,875 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,875 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,875 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,875 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,875 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,875 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,876 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,879 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,879 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,880 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,880 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:23,880 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:14:23,880 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:14:23,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:25,510 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:25,510 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o /tmp/ccTWlI8t.s 2021-07-15T22:14:25,517 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:26,342 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:26,342 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:26,342 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/lpmdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:26,345 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mdffformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:26,355 Using built-in specs. 2021-07-15T22:14:26,356 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:26,357 Target: arm-linux-gnueabihf 2021-07-15T22:14:26,357 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:26,357 Thread model: posix 2021-07-15T22:14:26,358 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:26,358 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:26,359 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:26,362 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mdffformat.cpp -quiet -dumpbase mdffformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cckyo0JM.s 2021-07-15T22:14:26,378 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:26,378 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:26,378 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:26,379 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:26,379 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:26,379 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:26,379 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:26,379 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:26,380 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:26,380 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:26,380 #include "..." search starts here: 2021-07-15T22:14:26,380 #include <...> search starts here: 2021-07-15T22:14:26,380 /usr/include/eigen3 2021-07-15T22:14:26,380 include 2021-07-15T22:14:26,381 /usr/include/python3.9 2021-07-15T22:14:26,381 /usr/include/c++/10 2021-07-15T22:14:26,381 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:26,381 /usr/include/c++/10/backward 2021-07-15T22:14:26,381 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:26,381 /usr/local/include 2021-07-15T22:14:26,382 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:26,382 /usr/include 2021-07-15T22:14:26,382 End of search list. 2021-07-15T22:14:26,382 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:26,382 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:26,383 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:26,398 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:27,776 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:27,776 from include/openbabel/mol.h:43, 2021-07-15T22:14:27,777 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:27,777 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:14:27,777 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:27,777 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:27,777 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:27,777 | ^ 2021-07-15T22:14:27,777 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:27,778 37 | # define UNUSED(x) x 2021-07-15T22:14:27,778 | ^ 2021-07-15T22:14:28,471 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:28,471 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:28,471 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:14:28,471 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,471 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,472 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:28,472 | ^ 2021-07-15T22:14:28,472 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:28,472 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:28,472 | ^~~~~~~~ 2021-07-15T22:14:28,474 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,475 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,475 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:28,475 | ^ 2021-07-15T22:14:28,475 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:28,475 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:28,475 | ^~~~~~~~ 2021-07-15T22:14:28,491 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,491 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,491 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:28,491 | ^ 2021-07-15T22:14:28,492 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:28,492 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:28,492 | ^~~~~~~~ 2021-07-15T22:14:28,497 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:28,498 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:28,498 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:14:28,498 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:28,498 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:28,498 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:28,498 | ^ 2021-07-15T22:14:28,498 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:28,498 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:28,499 | ^~~~~~~~ 2021-07-15T22:14:28,901 ./src/formats/mdffformat.cpp: In member function ‘virtual int OpenBabel::MDFFFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:14:28,901 ./src/formats/mdffformat.cpp:71:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:14:28,902 71 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:28,902 | ~~~~^ 2021-07-15T22:14:28,902 ./src/formats/mdffformat.cpp:71:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:28,902 71 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:14:28,902 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:28,941 ./src/formats/mdffformat.cpp: In member function ‘virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:28,942 ./src/formats/mdffformat.cpp:241:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:28,942 241 | for(int i = 0; i < atom_t_prop.size(); i++) 2021-07-15T22:14:28,942 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:28,942 ./src/formats/mdffformat.cpp:262:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:14:28,942 262 | for(unsigned int j = 0; j < atom_t_prop[i].num_of_atoms; j++) 2021-07-15T22:14:28,943 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:28,943 ./src/formats/mdffformat.cpp: In member function ‘bool OpenBabel::aindx::operator<(const OpenBabel::aindx&) const’: 2021-07-15T22:14:28,943 ./src/formats/mdffformat.cpp:321:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:28,943 321 | for(int i = 0; i < vs.size(); i++) 2021-07-15T22:14:28,943 | ~~^~~~~~~~~~~ 2021-07-15T22:14:28,981 ./src/formats/mdffformat.cpp: In member function ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:28,982 ./src/formats/mdffformat.cpp:380:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:28,982 380 | for(int i = 0; i < vs.size(); i++) 2021-07-15T22:14:28,982 | ~~^~~~~~~~~~~ 2021-07-15T22:14:29,061 ./src/formats/mdffformat.cpp:435:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:29,062 435 | for (int i = 0; i < atypes_def.size(); i++) 2021-07-15T22:14:29,062 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:29,062 ./src/formats/mdffformat.cpp:442:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:29,062 442 | for (int i = 0; i < atypes_def.size(); i++) 2021-07-15T22:14:29,062 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:29,101 ./src/formats/mdffformat.cpp:492:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, unsigned int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:14:29,102 492 | for(int j = 0; j < atypes_def.size(); j++) 2021-07-15T22:14:29,102 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,047 In file included from /usr/include/c++/10/map:60, 2021-07-15T22:14:35,047 from include/openbabel/mol.h:37, 2021-07-15T22:14:35,047 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:35,047 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:14:35,048 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-15T22:14:35,048 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:35,048 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-15T22:14:35,048 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,870 In file included from /usr/include/c++/10/map:61, 2021-07-15T22:14:35,870 from include/openbabel/mol.h:37, 2021-07-15T22:14:35,871 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:35,871 from ./src/formats/mdffformat.cpp:17: 2021-07-15T22:14:35,871 /usr/include/c++/10/bits/stl_map.h: In member function ‘virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:35,871 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:35,871 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:35,871 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,871 502 | std::tuple(__k), 2021-07-15T22:14:35,871 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,872 503 | std::tuple<>()); 2021-07-15T22:14:35,872 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,872 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:35,872 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:35,873 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,873 502 | std::tuple(__k), 2021-07-15T22:14:35,873 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,873 503 | std::tuple<>()); 2021-07-15T22:14:35,873 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,874 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:35,874 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:35,874 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,875 502 | std::tuple(__k), 2021-07-15T22:14:35,875 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,875 503 | std::tuple<>()); 2021-07-15T22:14:35,875 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,881 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-15T22:14:35,881 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-15T22:14:35,881 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,881 502 | std::tuple(__k), 2021-07-15T22:14:35,881 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:35,881 503 | std::tuple<>()); 2021-07-15T22:14:35,882 | ~~~~~~~~~~~~~~~ 2021-07-15T22:14:37,976 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:37,977 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o /tmp/cckyo0JM.s 2021-07-15T22:14:37,982 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:14:38,827 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:14:38,828 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:14:38,828 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdffformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:38,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mdlformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:14:39,063 Using built-in specs. 2021-07-15T22:14:39,066 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:14:39,066 Target: arm-linux-gnueabihf 2021-07-15T22:14:39,066 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:14:39,067 Thread model: posix 2021-07-15T22:14:39,067 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:14:39,068 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:14:39,070 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:14:39,075 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mdlformat.cpp -quiet -dumpbase mdlformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4dkC8Z.s 2021-07-15T22:14:39,087 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:39,087 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:39,087 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:39,089 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:14:39,089 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:14:39,090 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:14:39,090 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:14:39,090 ignoring duplicate directory "/usr/include/" 2021-07-15T22:14:39,090 as it is a non-system directory that duplicates a system directory 2021-07-15T22:14:39,090 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:14:39,090 #include "..." search starts here: 2021-07-15T22:14:39,091 #include <...> search starts here: 2021-07-15T22:14:39,091 /usr/include/eigen3 2021-07-15T22:14:39,091 include 2021-07-15T22:14:39,091 /usr/include/python3.9 2021-07-15T22:14:39,091 /usr/include/c++/10 2021-07-15T22:14:39,091 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:14:39,092 /usr/include/c++/10/backward 2021-07-15T22:14:39,092 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:14:39,092 /usr/local/include 2021-07-15T22:14:39,092 /usr/include/arm-linux-gnueabihf 2021-07-15T22:14:39,092 /usr/include 2021-07-15T22:14:39,093 End of search list. 2021-07-15T22:14:39,094 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:14:39,094 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:14:39,096 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:14:39,110 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:14:40,725 In file included from include/openbabel/atom.h:33, 2021-07-15T22:14:40,725 from include/openbabel/mol.h:43, 2021-07-15T22:14:40,725 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:40,725 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:14:40,726 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:14:40,726 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:14:40,726 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:14:40,726 | ^ 2021-07-15T22:14:40,726 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:14:40,726 37 | # define UNUSED(x) x 2021-07-15T22:14:40,726 | ^ 2021-07-15T22:14:41,339 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:41,339 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:41,339 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:14:41,339 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:41,339 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:41,339 862 | {return new OBVibrationData(*this);} 2021-07-15T22:14:41,339 | ^ 2021-07-15T22:14:41,340 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:14:41,340 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:14:41,340 | ^~~~~~~~ 2021-07-15T22:14:41,344 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:41,344 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:41,344 907 | {return new OBDOSData(*this);} 2021-07-15T22:14:41,344 | ^ 2021-07-15T22:14:41,345 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:14:41,345 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:14:41,345 | ^~~~~~~~ 2021-07-15T22:14:41,362 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:41,362 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:41,362 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:14:41,362 | ^ 2021-07-15T22:14:41,362 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:14:41,362 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:14:41,363 | ^~~~~~~~ 2021-07-15T22:14:41,367 In file included from include/openbabel/mol.h:52, 2021-07-15T22:14:41,368 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:14:41,368 from ./src/formats/mdlformat.cpp:26: 2021-07-15T22:14:41,368 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:14:41,368 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:14:41,368 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:14:41,368 | ^ 2021-07-15T22:14:41,368 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:14:41,369 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:14:41,369 | ^~~~~~~~ 2021-07-15T22:14:41,935 In file included from ./src/formats/mdlformat.cpp:34: 2021-07-15T22:14:41,935 include/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: 2021-07-15T22:14:41,935 include/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,935 51 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,935 | ^~ 2021-07-15T22:14:41,936 include/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,936 51 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,936 | ^~~~~ 2021-07-15T22:14:41,936 include/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,937 64 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,937 | ^~ 2021-07-15T22:14:41,937 include/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,937 64 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,937 | ^~~~~ 2021-07-15T22:14:41,938 include/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,938 77 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,938 | ^~ 2021-07-15T22:14:41,938 include/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,938 77 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,939 | ^~~~~ 2021-07-15T22:14:41,939 include/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,939 90 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,939 | ^~ 2021-07-15T22:14:41,940 include/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,940 90 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,940 | ^~~~~ 2021-07-15T22:14:41,941 include/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,941 103 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,941 | ^~ 2021-07-15T22:14:41,941 include/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,941 103 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,941 | ^~~~~ 2021-07-15T22:14:41,942 include/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,942 116 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,942 | ^~ 2021-07-15T22:14:41,942 include/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,943 116 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,943 | ^~~~~ 2021-07-15T22:14:41,943 include/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,943 119 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,943 | ^~ 2021-07-15T22:14:41,943 include/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,944 119 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,944 | ^~~~~ 2021-07-15T22:14:41,944 include/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,944 121 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,944 | ^~ 2021-07-15T22:14:41,944 include/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,945 121 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,945 | ^~~~~ 2021-07-15T22:14:41,945 include/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,946 134 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,946 | ^~ 2021-07-15T22:14:41,946 include/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,946 134 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,946 | ^~~~~ 2021-07-15T22:14:41,946 include/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,947 137 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,947 | ^~ 2021-07-15T22:14:41,947 include/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,947 137 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,947 | ^~~~~ 2021-07-15T22:14:41,947 include/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,948 139 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,948 | ^~ 2021-07-15T22:14:41,948 include/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,948 139 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,948 | ^~~~~ 2021-07-15T22:14:41,949 include/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,949 152 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,949 | ^~ 2021-07-15T22:14:41,949 include/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,949 152 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,949 | ^~~~~ 2021-07-15T22:14:41,951 include/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,952 155 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,952 | ^~ 2021-07-15T22:14:41,952 include/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,952 155 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,952 | ^~~~~ 2021-07-15T22:14:41,952 include/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,952 157 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,952 | ^~ 2021-07-15T22:14:41,953 include/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,953 157 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,953 | ^~~~~ 2021-07-15T22:14:41,953 include/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,953 170 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,953 | ^~ 2021-07-15T22:14:41,953 include/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,953 170 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,954 | ^~~~~ 2021-07-15T22:14:41,954 include/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,954 173 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,954 | ^~ 2021-07-15T22:14:41,954 include/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,954 173 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,954 | ^~~~~ 2021-07-15T22:14:41,954 include/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,955 175 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,955 | ^~ 2021-07-15T22:14:41,955 include/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,955 175 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,955 | ^~~~~ 2021-07-15T22:14:41,955 include/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,955 188 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,955 | ^~ 2021-07-15T22:14:41,956 include/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,956 188 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,956 | ^~~~~ 2021-07-15T22:14:41,956 include/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,956 191 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,956 | ^~ 2021-07-15T22:14:41,956 include/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,956 191 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,956 | ^~~~~ 2021-07-15T22:14:41,957 include/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,957 193 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,957 | ^~ 2021-07-15T22:14:41,957 include/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,957 193 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,957 | ^~~~~ 2021-07-15T22:14:41,957 include/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,958 206 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,958 | ^~ 2021-07-15T22:14:41,958 include/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,958 206 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,958 | ^~~~~ 2021-07-15T22:14:41,958 include/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,958 209 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,958 | ^~ 2021-07-15T22:14:41,958 include/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,959 209 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,959 | ^~~~~ 2021-07-15T22:14:41,959 include/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,959 211 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,959 | ^~ 2021-07-15T22:14:41,959 include/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,959 211 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,959 | ^~~~~ 2021-07-15T22:14:41,960 include/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,960 223 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,960 | ^~ 2021-07-15T22:14:41,960 include/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,960 223 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,960 | ^~~~~ 2021-07-15T22:14:41,960 include/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,960 226 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,960 | ^~ 2021-07-15T22:14:41,961 include/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,961 226 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,961 | ^~~~~ 2021-07-15T22:14:41,961 include/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,961 228 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,961 | ^~ 2021-07-15T22:14:41,961 include/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,961 228 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,962 | ^~~~~ 2021-07-15T22:14:41,962 include/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,962 240 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,962 | ^~ 2021-07-15T22:14:41,962 include/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,962 240 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,962 | ^~~~~ 2021-07-15T22:14:41,962 include/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,963 243 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,963 | ^~ 2021-07-15T22:14:41,963 include/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,963 243 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,963 | ^~~~~ 2021-07-15T22:14:41,963 include/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,963 245 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,963 | ^~ 2021-07-15T22:14:41,964 include/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,964 245 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,964 | ^~~~~ 2021-07-15T22:14:41,964 include/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,964 257 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,964 | ^~ 2021-07-15T22:14:41,964 include/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,965 257 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,965 | ^~~~~ 2021-07-15T22:14:41,965 include/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,965 260 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,965 | ^~ 2021-07-15T22:14:41,965 include/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,966 260 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,966 | ^~~~~ 2021-07-15T22:14:41,966 include/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,966 262 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,966 | ^~ 2021-07-15T22:14:41,966 include/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,966 262 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,966 | ^~~~~ 2021-07-15T22:14:41,967 include/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,967 274 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,967 | ^~ 2021-07-15T22:14:41,967 include/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,967 274 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,967 | ^~~~~ 2021-07-15T22:14:41,967 include/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,968 277 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,968 | ^~ 2021-07-15T22:14:41,968 include/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,968 277 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,968 | ^~~~~ 2021-07-15T22:14:41,968 include/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,968 279 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,968 | ^~ 2021-07-15T22:14:41,969 include/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,969 279 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,969 | ^~~~~ 2021-07-15T22:14:41,969 include/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,969 291 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,969 | ^~ 2021-07-15T22:14:41,969 include/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,970 291 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,970 | ^~~~~ 2021-07-15T22:14:41,970 include/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,970 294 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,970 | ^~ 2021-07-15T22:14:41,970 include/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,970 294 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,970 | ^~~~~ 2021-07-15T22:14:41,971 include/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,971 296 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,971 | ^~ 2021-07-15T22:14:41,971 include/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,971 296 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,971 | ^~~~~ 2021-07-15T22:14:41,972 include/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,972 298 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,972 | ^~ 2021-07-15T22:14:41,972 include/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,972 298 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,972 | ^~~~~ 2021-07-15T22:14:41,972 include/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,973 310 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,973 | ^~ 2021-07-15T22:14:41,973 include/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,973 310 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,973 | ^~~~~ 2021-07-15T22:14:41,973 include/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,973 313 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,973 | ^~ 2021-07-15T22:14:41,974 include/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,974 313 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,974 | ^~~~~ 2021-07-15T22:14:41,974 include/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,974 315 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,974 | ^~ 2021-07-15T22:14:41,974 include/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,975 315 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,975 | ^~~~~ 2021-07-15T22:14:41,975 include/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,975 317 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,975 | ^~ 2021-07-15T22:14:41,975 include/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,975 317 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,976 | ^~~~~ 2021-07-15T22:14:41,976 include/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,976 329 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,976 | ^~ 2021-07-15T22:14:41,976 include/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,976 329 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,976 | ^~~~~ 2021-07-15T22:14:41,976 include/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,977 332 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,977 | ^~ 2021-07-15T22:14:41,977 include/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,977 332 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,977 | ^~~~~ 2021-07-15T22:14:41,977 include/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,977 334 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,978 | ^~ 2021-07-15T22:14:41,978 include/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,978 334 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,978 | ^~~~~ 2021-07-15T22:14:41,978 include/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,978 336 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,978 | ^~ 2021-07-15T22:14:41,979 include/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,979 336 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,979 | ^~~~~ 2021-07-15T22:14:41,979 include/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,979 348 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,979 | ^~ 2021-07-15T22:14:41,979 include/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,979 348 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,979 | ^~~~~ 2021-07-15T22:14:41,980 include/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,980 351 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,980 | ^~ 2021-07-15T22:14:41,980 include/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,980 351 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,980 | ^~~~~ 2021-07-15T22:14:41,980 include/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,980 353 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,981 | ^~ 2021-07-15T22:14:41,981 include/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,981 353 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,981 | ^~~~~ 2021-07-15T22:14:41,981 include/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,981 355 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,981 | ^~ 2021-07-15T22:14:41,982 include/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,982 355 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,982 | ^~~~~ 2021-07-15T22:14:41,982 include/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,982 367 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,982 | ^~ 2021-07-15T22:14:41,982 include/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,982 367 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,983 | ^~~~~ 2021-07-15T22:14:41,983 include/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,983 370 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,983 | ^~ 2021-07-15T22:14:41,983 include/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,983 370 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,983 | ^~~~~ 2021-07-15T22:14:41,983 include/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,984 372 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,984 | ^~ 2021-07-15T22:14:41,984 include/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,984 372 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,984 | ^~~~~ 2021-07-15T22:14:41,984 include/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,984 374 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,984 | ^~ 2021-07-15T22:14:41,984 include/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,985 374 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,985 | ^~~~~ 2021-07-15T22:14:41,985 include/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,985 385 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,985 | ^~ 2021-07-15T22:14:41,985 include/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,985 385 | if (val <= 7) return 7; break; 2021-07-15T22:14:41,985 | ^~~~~ 2021-07-15T22:14:41,986 include/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,986 388 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,986 | ^~ 2021-07-15T22:14:41,986 include/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,986 388 | if (val <= 6) return 6; break; 2021-07-15T22:14:41,986 | ^~~~~ 2021-07-15T22:14:41,986 include/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,987 390 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,987 | ^~ 2021-07-15T22:14:41,987 include/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,987 390 | if (val <= 5) return 5; break; 2021-07-15T22:14:41,987 | ^~~~~ 2021-07-15T22:14:41,987 include/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,987 392 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,987 | ^~ 2021-07-15T22:14:41,987 include/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,988 392 | if (val <= 4) return 4; break; 2021-07-15T22:14:41,988 | ^~~~~ 2021-07-15T22:14:41,988 include/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:14:41,988 394 | if (val <= 3) return 3; break; 2021-07-15T22:14:41,988 | ^~ 2021-07-15T22:14:41,988 include/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:14:41,988 394 | if (val <= 3) return 3; break; 2021-07-15T22:14:41,988 | ^~~~~ 2021-07-15T22:14:41,988 include/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: 2021-07-15T22:14:41,989 include/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:14:41,989 416 | if (val > impval) { 2021-07-15T22:14:41,989 | ~~~~^~~~~~~~ 2021-07-15T22:14:42,360 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadV3000Block(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*, bool)’: 2021-07-15T22:14:42,361 ./src/formats/mdlformat.cpp:1273:85: warning: unused parameter ‘DoMany’ [-Wunused-parameter] 2021-07-15T22:14:42,361 1273 | bool MDLFormat::ReadV3000Block(istream& ifs, OBMol& mol, OBConversion* pConv,bool DoMany) 2021-07-15T22:14:42,361 | ~~~~~^~~~~~ 2021-07-15T22:14:42,378 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:14:42,378 ./src/formats/mdlformat.cpp:1341:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 2021-07-15T22:14:42,379 1341 | bool chiralWatch=false; 2021-07-15T22:14:42,379 | ^~~~~~~~~~~ 2021-07-15T22:14:42,379 ./src/formats/mdlformat.cpp:1338:72: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:42,380 1338 | bool MDLFormat::ReadAtomBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:14:42,380 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:42,384 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadBondBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:14:42,384 ./src/formats/mdlformat.cpp:1422:72: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:42,384 1422 | bool MDLFormat::ReadBondBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:14:42,384 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:42,386 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadUnimplementedBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*, std::string&)’: 2021-07-15T22:14:42,387 ./src/formats/mdlformat.cpp:1481:62: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:14:42,387 1481 | bool MDLFormat::ReadUnimplementedBlock(istream& ifs,OBMol& mol, OBConversion* pConv, string& blockname) 2021-07-15T22:14:42,387 | ~~~~~~~^~~ 2021-07-15T22:14:42,387 ./src/formats/mdlformat.cpp:1481:81: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:42,387 1481 | bool MDLFormat::ReadUnimplementedBlock(istream& ifs,OBMol& mol, OBConversion* pConv, string& blockname) 2021-07-15T22:14:42,387 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:42,389 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadRGroupBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:14:42,390 ./src/formats/mdlformat.cpp:1497:55: warning: unused parameter ‘mol’ [-Wunused-parameter] 2021-07-15T22:14:42,390 1497 | bool MDLFormat::ReadRGroupBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:14:42,390 | ~~~~~~~^~~ 2021-07-15T22:14:42,390 ./src/formats/mdlformat.cpp:1497:74: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:42,390 1497 | bool MDLFormat::ReadRGroupBlock(istream& ifs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:14:42,390 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:42,411 ./src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::WriteV3000(std::ostream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: 2021-07-15T22:14:42,411 ./src/formats/mdlformat.cpp:1514:69: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:14:42,412 1514 | bool MDLFormat::WriteV3000(ostream& ofs,OBMol& mol, OBConversion* pConv) 2021-07-15T22:14:42,412 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:14:42,504 ./src/formats/mdlformat.cpp: In member function ‘void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)’: 2021-07-15T22:14:42,504 ./src/formats/mdlformat.cpp:1957:45: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:14:42,504 1957 | unsigned int second = (a1_b2 == NULL) ? OBStereo::ImplicitRef : a1_b2->GetNbrAtom(a1)->GetId(); 2021-07-15T22:14:42,505 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:42,505 ./src/formats/mdlformat.cpp:1958:45: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:14:42,505 1958 | unsigned int fourth = (a2_b2 == NULL) ? OBStereo::ImplicitRef : a2_b2->GetNbrAtom(a2)->GetId(); 2021-07-15T22:14:42,505 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:44,469 ./src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:14:44,469 ./src/formats/mdlformat.cpp:527:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:14:44,469 527 | flag |= OBBond::CisOrTrans; 2021-07-15T22:14:44,469 | ~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:44,470 ./src/formats/mdlformat.cpp:528:15: note: here 2021-07-15T22:14:44,470 528 | case 4: 2021-07-15T22:14:44,470 | ^~~~ 2021-07-15T22:14:48,716 ./src/formats/mdlformat.cpp: In member function ‘std::string OpenBabel::MDLFormat::GetTimeDate()’: 2021-07-15T22:14:48,716 ./src/formats/mdlformat.cpp:1648:31: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 7 [-Wformat-truncation=] 2021-07-15T22:14:48,716 1648 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, 2021-07-15T22:14:48,716 | ^~~~ 2021-07-15T22:14:48,716 ./src/formats/mdlformat.cpp:1648:22: note: directive argument in the range [-2147483648, 2147483547] 2021-07-15T22:14:48,717 1648 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, 2021-07-15T22:14:48,717 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:48,717 In file included from /usr/include/stdio.h:867, 2021-07-15T22:14:48,718 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:14:48,718 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:14:48,718 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:14:48,718 from /usr/include/c++/10/string:55, 2021-07-15T22:14:48,718 from /usr/include/c++/10/bits/locale_classes.h:40, 2021-07-15T22:14:48,718 from /usr/include/c++/10/bits/ios_base.h:41, 2021-07-15T22:14:48,718 from /usr/include/c++/10/iomanip:40, 2021-07-15T22:14:48,718 from ./src/formats/mdlformat.cpp:23: 2021-07-15T22:14:48,718 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 2021-07-15T22:14:48,719 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:14:48,719 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:48,719 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:14:48,719 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:51,285 ./src/formats/mdlformat.cpp: In member function ‘void OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map*)’: 2021-07-15T22:14:51,285 ./src/formats/mdlformat.cpp:1967:58: warning: ‘a2_stereo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:14:51,285 1967 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) 2021-07-15T22:14:51,285 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:14:51,286 ./src/formats/mdlformat.cpp:1967:21: warning: ‘a1_stereo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:14:51,286 1967 | if (a1_stereo == OBStereo::UnknownDir || a2_stereo == OBStereo::UnknownDir) 2021-07-15T22:14:51,286 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:00,928 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:00,929 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o /tmp/cc4dkC8Z.s 2021-07-15T22:15:00,935 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:02,789 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:02,790 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:02,790 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mdlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:02,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mmcifformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:02,808 Using built-in specs. 2021-07-15T22:15:02,810 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:02,810 Target: arm-linux-gnueabihf 2021-07-15T22:15:02,811 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:02,811 Thread model: posix 2021-07-15T22:15:02,811 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:02,812 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:02,813 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:02,816 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mmcifformat.cpp -quiet -dumpbase mmcifformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccc1SIHy.s 2021-07-15T22:15:02,830 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:02,830 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:02,831 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:02,831 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:02,832 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:02,832 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:02,832 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:02,832 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:02,832 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:02,832 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:02,832 #include "..." search starts here: 2021-07-15T22:15:02,833 #include <...> search starts here: 2021-07-15T22:15:02,833 /usr/include/eigen3 2021-07-15T22:15:02,833 include 2021-07-15T22:15:02,833 /usr/include/python3.9 2021-07-15T22:15:02,833 /usr/include/c++/10 2021-07-15T22:15:02,833 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:02,834 /usr/include/c++/10/backward 2021-07-15T22:15:02,834 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:02,834 /usr/local/include 2021-07-15T22:15:02,834 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:02,834 /usr/include 2021-07-15T22:15:02,834 End of search list. 2021-07-15T22:15:02,835 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:02,835 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:02,835 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:02,848 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:04,224 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:04,225 from include/openbabel/mol.h:43, 2021-07-15T22:15:04,225 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:04,225 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:15:04,225 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:04,225 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:04,225 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:04,226 | ^ 2021-07-15T22:15:04,226 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:04,226 37 | # define UNUSED(x) x 2021-07-15T22:15:04,226 | ^ 2021-07-15T22:15:04,922 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:04,922 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:04,922 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:15:04,922 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:04,922 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:04,923 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:04,923 | ^ 2021-07-15T22:15:04,923 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:04,923 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:04,923 | ^~~~~~~~ 2021-07-15T22:15:04,925 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:04,926 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:04,926 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:04,926 | ^ 2021-07-15T22:15:04,926 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:04,926 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:04,926 | ^~~~~~~~ 2021-07-15T22:15:04,942 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:04,942 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:04,942 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:04,942 | ^ 2021-07-15T22:15:04,943 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:04,943 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:04,943 | ^~~~~~~~ 2021-07-15T22:15:04,947 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:04,947 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:04,947 from ./src/formats/mmcifformat.cpp:19: 2021-07-15T22:15:04,947 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:04,947 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:04,947 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:04,948 | ^ 2021-07-15T22:15:04,948 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:04,948 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:04,948 | ^~~~~~~~ 2021-07-15T22:15:06,942 ./src/formats/mmcifformat.cpp: In member function ‘bool OpenBabel::CIFLexer::next_token(OpenBabel::CIFLexer::Token&)’: 2021-07-15T22:15:06,942 ./src/formats/mmcifformat.cpp:394:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:15:06,942 394 | if (last_char == '\n') 2021-07-15T22:15:06,942 | ^~ 2021-07-15T22:15:06,942 ./src/formats/mmcifformat.cpp:421:6: note: here 2021-07-15T22:15:06,943 421 | default: // reading an un-quoted text string 2021-07-15T22:15:06,943 | ^~~~~~~ 2021-07-15T22:15:06,949 ./src/formats/mmcifformat.cpp: In member function ‘virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:06,949 ./src/formats/mmcifformat.cpp:638:16: warning: this statement may fall through [-Wimplicit-fallthrough=] 2021-07-15T22:15:06,950 638 | if(string::npos != token.as_text.find_first_of("0123456789")) 2021-07-15T22:15:06,950 | ^~ 2021-07-15T22:15:06,950 ./src/formats/mmcifformat.cpp:640:14: note: here 2021-07-15T22:15:06,950 640 | case CIFTagID::_atom_site_type_symbol: 2021-07-15T22:15:06,950 | ^~~~ 2021-07-15T22:15:15,335 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:15,336 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o /tmp/ccc1SIHy.s 2021-07-15T22:15:15,341 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:16,319 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:16,319 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:16,319 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmcifformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:16,324 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mmodformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:16,334 Using built-in specs. 2021-07-15T22:15:16,335 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:16,335 Target: arm-linux-gnueabihf 2021-07-15T22:15:16,335 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:16,336 Thread model: posix 2021-07-15T22:15:16,336 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:16,336 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:16,336 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:16,336 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mmodformat.cpp -quiet -dumpbase mmodformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccHBW00M.s 2021-07-15T22:15:16,349 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:16,350 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:16,350 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:16,350 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:16,351 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:16,351 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:16,351 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:16,351 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:16,353 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:16,353 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:16,353 #include "..." search starts here: 2021-07-15T22:15:16,353 #include <...> search starts here: 2021-07-15T22:15:16,353 /usr/include/eigen3 2021-07-15T22:15:16,353 include 2021-07-15T22:15:16,354 /usr/include/python3.9 2021-07-15T22:15:16,354 /usr/include/c++/10 2021-07-15T22:15:16,354 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:16,354 /usr/include/c++/10/backward 2021-07-15T22:15:16,354 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:16,355 /usr/local/include 2021-07-15T22:15:16,355 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:16,355 /usr/include 2021-07-15T22:15:16,355 End of search list. 2021-07-15T22:15:16,355 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:16,355 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:16,356 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:16,369 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:17,728 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:17,728 from include/openbabel/mol.h:43, 2021-07-15T22:15:17,728 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:17,728 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:15:17,728 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:17,729 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:17,729 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:17,729 | ^ 2021-07-15T22:15:17,729 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:17,729 37 | # define UNUSED(x) x 2021-07-15T22:15:17,729 | ^ 2021-07-15T22:15:18,420 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:18,421 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:18,421 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:15:18,421 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:18,421 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:18,421 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:18,421 | ^ 2021-07-15T22:15:18,422 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:18,422 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:18,422 | ^~~~~~~~ 2021-07-15T22:15:18,424 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:18,424 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:18,424 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:18,425 | ^ 2021-07-15T22:15:18,425 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:18,425 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:18,425 | ^~~~~~~~ 2021-07-15T22:15:18,440 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:18,441 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:18,441 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:18,441 | ^ 2021-07-15T22:15:18,441 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:18,441 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:18,441 | ^~~~~~~~ 2021-07-15T22:15:18,445 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:18,445 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:18,446 from ./src/formats/mmodformat.cpp:17: 2021-07-15T22:15:18,446 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:18,446 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:18,446 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:18,446 | ^ 2021-07-15T22:15:18,446 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:18,447 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:18,447 | ^~~~~~~~ 2021-07-15T22:15:21,980 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:21,981 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o /tmp/ccHBW00M.s 2021-07-15T22:15:21,986 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:22,288 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:22,289 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:22,289 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mmodformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:22,291 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mol2format.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mol2format.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:22,299 Using built-in specs. 2021-07-15T22:15:22,300 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:22,300 Target: arm-linux-gnueabihf 2021-07-15T22:15:22,300 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:22,301 Thread model: posix 2021-07-15T22:15:22,301 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:22,301 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:22,301 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:22,301 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mol2format.cpp -quiet -dumpbase mol2format.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mol2format.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccTo5Dj1.s 2021-07-15T22:15:22,312 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:22,313 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:22,313 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:22,313 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:22,313 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:22,314 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:22,314 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:22,314 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:22,315 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:22,315 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:22,315 #include "..." search starts here: 2021-07-15T22:15:22,315 #include <...> search starts here: 2021-07-15T22:15:22,315 /usr/include/eigen3 2021-07-15T22:15:22,315 include 2021-07-15T22:15:22,316 /usr/include/python3.9 2021-07-15T22:15:22,316 /usr/include/c++/10 2021-07-15T22:15:22,316 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:22,316 /usr/include/c++/10/backward 2021-07-15T22:15:22,316 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:22,316 /usr/local/include 2021-07-15T22:15:22,317 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:22,317 /usr/include 2021-07-15T22:15:22,317 End of search list. 2021-07-15T22:15:22,317 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:22,317 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:22,318 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:22,334 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:23,699 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:23,699 from include/openbabel/mol.h:43, 2021-07-15T22:15:23,700 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:23,700 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:15:23,700 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:23,700 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:23,700 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:23,700 | ^ 2021-07-15T22:15:23,701 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:23,701 37 | # define UNUSED(x) x 2021-07-15T22:15:23,701 | ^ 2021-07-15T22:15:24,394 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:24,394 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:24,394 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:15:24,394 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:24,394 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:24,395 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:24,395 | ^ 2021-07-15T22:15:24,395 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:24,395 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:24,395 | ^~~~~~~~ 2021-07-15T22:15:24,397 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:24,398 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:24,398 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:24,398 | ^ 2021-07-15T22:15:24,398 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:24,398 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:24,398 | ^~~~~~~~ 2021-07-15T22:15:24,414 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:24,414 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:24,415 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:24,415 | ^ 2021-07-15T22:15:24,415 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:24,415 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:24,415 | ^~~~~~~~ 2021-07-15T22:15:24,419 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:24,419 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:24,419 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:15:24,420 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:24,420 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:24,420 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:24,420 | ^ 2021-07-15T22:15:24,420 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:24,420 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:24,420 | ^~~~~~~~ 2021-07-15T22:15:24,706 ./src/formats/mol2format.cpp: In member function ‘virtual const char* OpenBabel::MOL2Format::Description()’: 2021-07-15T22:15:24,706 ./src/formats/mol2format.cpp:49:9: warning: statement has no effect [-Wunused-value] 2021-07-15T22:15:24,707 49 | " c Write UCSF Dock scores saved in comments preceeding molecules\n\n"; 2021-07-15T22:15:24,707 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:24,733 ./src/formats/mol2format.cpp: In member function ‘virtual bool OpenBabel::MOL2Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:24,733 ./src/formats/mol2format.cpp:391:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,733 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) 2021-07-15T22:15:24,734 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:15:24,734 ./src/formats/mol2format.cpp:391:87: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,734 391 | if ((bond2->GetBeginAtom()->GetIdx() == idx1 || bond2->GetEndAtom()->GetIdx() == idx1) 2021-07-15T22:15:24,734 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:15:24,734 ./src/formats/mol2format.cpp:394:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,734 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) 2021-07-15T22:15:24,734 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:15:24,735 ./src/formats/mol2format.cpp:394:92: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,735 394 | else if ((bond2->GetBeginAtom()->GetIdx() == idx2 || bond2->GetEndAtom()->GetIdx() == idx2) 2021-07-15T22:15:24,735 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:15:24,737 ./src/formats/mol2format.cpp:476:99: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,737 476 | if (n_h_bonded < min_n_h_bonded || (n_h_bonded == min_n_h_bonded && partner->GetIdx() < min_idx)) { 2021-07-15T22:15:24,737 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:15:24,738 ./src/formats/mol2format.cpp:499:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:15:24,739 499 | if (partner->GetIdx() == min_idx) { 2021-07-15T22:15:24,739 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:15:24,766 ./src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:15:24,767 ./src/formats/mol2format.cpp:727:10: warning: unused variable ‘ch’ [-Wunused-variable] 2021-07-15T22:15:24,767 727 | char ch = ifs.peek(); 2021-07-15T22:15:24,767 | ^~ 2021-07-15T22:15:27,414 ./src/formats/mol2format.cpp: In member function ‘virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:27,414 ./src/formats/mol2format.cpp:677:40: warning: ‘%-6s’ directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=] 2021-07-15T22:15:27,415 677 | snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f", 2021-07-15T22:15:27,415 | ^~~~ 2021-07-15T22:15:27,415 678 | atom->GetIdx(),label, 2021-07-15T22:15:27,415 | ~~~~~ 2021-07-15T22:15:27,415 In file included from /usr/include/stdio.h:867, 2021-07-15T22:15:27,415 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:15:27,416 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:15:27,416 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:15:27,416 from /usr/include/c++/10/string:55, 2021-07-15T22:15:27,416 from include/openbabel/mol.h:36, 2021-07-15T22:15:27,416 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:27,416 from ./src/formats/mol2format.cpp:17: 2021-07-15T22:15:27,416 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 77 or more bytes (assuming 32838) into a destination of size 32768 2021-07-15T22:15:27,416 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:15:27,417 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:27,417 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:15:27,417 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:29,786 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:29,786 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mol2format.o /tmp/ccTo5Dj1.s 2021-07-15T22:15:29,793 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:30,254 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:30,255 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:30,255 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mol2format.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:30,257 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/moldenformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:30,267 Using built-in specs. 2021-07-15T22:15:30,268 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:30,269 Target: arm-linux-gnueabihf 2021-07-15T22:15:30,269 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:30,269 Thread model: posix 2021-07-15T22:15:30,269 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:30,269 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:30,270 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:30,270 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/moldenformat.cpp -quiet -dumpbase moldenformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccm7wehd.s 2021-07-15T22:15:30,284 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:30,284 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:30,284 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:30,285 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:30,285 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:30,285 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:30,285 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:30,286 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:30,286 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:30,286 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:30,286 #include "..." search starts here: 2021-07-15T22:15:30,286 #include <...> search starts here: 2021-07-15T22:15:30,287 /usr/include/eigen3 2021-07-15T22:15:30,287 include 2021-07-15T22:15:30,287 /usr/include/python3.9 2021-07-15T22:15:30,287 /usr/include/c++/10 2021-07-15T22:15:30,287 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:30,287 /usr/include/c++/10/backward 2021-07-15T22:15:30,288 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:30,288 /usr/local/include 2021-07-15T22:15:30,288 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:30,288 /usr/include 2021-07-15T22:15:30,288 End of search list. 2021-07-15T22:15:30,288 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:30,289 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:30,289 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:30,304 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:31,820 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:31,820 from include/openbabel/mol.h:43, 2021-07-15T22:15:31,820 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:31,820 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:15:31,820 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:31,820 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:31,821 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:31,821 | ^ 2021-07-15T22:15:31,821 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:31,821 37 | # define UNUSED(x) x 2021-07-15T22:15:31,821 | ^ 2021-07-15T22:15:32,432 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:32,432 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:32,432 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:15:32,433 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:32,433 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:32,433 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:32,433 | ^ 2021-07-15T22:15:32,433 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:32,433 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:32,433 | ^~~~~~~~ 2021-07-15T22:15:32,437 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:32,437 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:32,438 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:32,438 | ^ 2021-07-15T22:15:32,438 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:32,438 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:32,438 | ^~~~~~~~ 2021-07-15T22:15:32,456 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:32,457 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:32,457 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:32,457 | ^ 2021-07-15T22:15:32,457 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:32,457 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:32,457 | ^~~~~~~~ 2021-07-15T22:15:32,462 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:32,462 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:32,463 from ./src/formats/moldenformat.cpp:36: 2021-07-15T22:15:32,463 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:32,463 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:32,463 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:32,463 | ^ 2021-07-15T22:15:32,463 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:32,463 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:32,463 | ^~~~~~~~ 2021-07-15T22:15:32,641 ./src/formats/moldenformat.cpp: In member function ‘virtual int OpenBabel::OBMoldenFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:15:32,641 ./src/formats/moldenformat.cpp:85:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:15:32,641 85 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:15:32,641 | ~~~~^ 2021-07-15T22:15:32,641 ./src/formats/moldenformat.cpp:85:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:15:32,642 85 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:15:32,642 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:15:32,654 ./src/formats/moldenformat.cpp: In member function ‘virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:32,654 ./src/formats/moldenformat.cpp:171:48: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:15:32,654 171 | if (sscanf(lineBuffer.c_str(), "%d", &natoms) == 0 || !natoms) { 2021-07-15T22:15:32,655 | ~^ ~~~~~~~ 2021-07-15T22:15:32,655 | | | 2021-07-15T22:15:32,655 | | unsigned int* 2021-07-15T22:15:32,655 | int* 2021-07-15T22:15:32,655 | %d 2021-07-15T22:15:35,334 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:35,334 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:15:35,334 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:15:35,334 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:35,334 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:15:35,335 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:35,382 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:35,382 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:35,445 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:35,446 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:36,811 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:15:36,811 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:15:36,811 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:36,811 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:36,811 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:36,812 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:36,812 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:36,812 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:36,812 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:36,815 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:36,815 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:36,815 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:36,817 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:36,817 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:36,818 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:36,823 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:36,823 from ./src/formats/moldenformat.cpp:29: 2021-07-15T22:15:36,823 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:36,823 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:36,823 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:38,967 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:38,968 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o /tmp/ccm7wehd.s 2021-07-15T22:15:38,972 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:39,578 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:39,578 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:39,578 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/moldenformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:39,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/molproformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/molproformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:39,592 Using built-in specs. 2021-07-15T22:15:39,593 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:39,593 Target: arm-linux-gnueabihf 2021-07-15T22:15:39,593 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:39,593 Thread model: posix 2021-07-15T22:15:39,594 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:39,594 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:39,594 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:39,594 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/molproformat.cpp -quiet -dumpbase molproformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/molproformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccmA6Rzt.s 2021-07-15T22:15:39,607 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:39,607 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:39,608 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:39,609 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:39,609 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:39,610 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:39,610 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:39,610 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:39,610 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:39,611 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:39,611 #include "..." search starts here: 2021-07-15T22:15:39,611 #include <...> search starts here: 2021-07-15T22:15:39,611 /usr/include/eigen3 2021-07-15T22:15:39,611 include 2021-07-15T22:15:39,612 /usr/include/python3.9 2021-07-15T22:15:39,612 /usr/include/c++/10 2021-07-15T22:15:39,612 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:39,612 /usr/include/c++/10/backward 2021-07-15T22:15:39,612 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:39,612 /usr/local/include 2021-07-15T22:15:39,613 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:39,613 /usr/include 2021-07-15T22:15:39,613 End of search list. 2021-07-15T22:15:39,613 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:39,614 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:39,614 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:39,629 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:40,985 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:40,985 from include/openbabel/mol.h:43, 2021-07-15T22:15:40,985 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:40,986 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:15:40,986 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:40,986 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:40,986 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:40,986 | ^ 2021-07-15T22:15:40,986 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:40,986 37 | # define UNUSED(x) x 2021-07-15T22:15:40,986 | ^ 2021-07-15T22:15:41,679 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:41,679 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:41,679 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:15:41,679 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:41,679 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:41,680 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:41,680 | ^ 2021-07-15T22:15:41,680 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:41,680 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:41,680 | ^~~~~~~~ 2021-07-15T22:15:41,682 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:41,683 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:41,683 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:41,683 | ^ 2021-07-15T22:15:41,683 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:41,683 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:41,683 | ^~~~~~~~ 2021-07-15T22:15:41,699 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:41,699 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:41,699 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:41,699 | ^ 2021-07-15T22:15:41,700 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:41,700 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:41,700 | ^~~~~~~~ 2021-07-15T22:15:41,704 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:41,704 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:41,704 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:15:41,704 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:41,704 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:41,704 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:41,705 | ^ 2021-07-15T22:15:41,705 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:41,705 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:41,705 | ^~~~~~~~ 2021-07-15T22:15:44,726 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:44,727 from include/openbabel/mol.h:35, 2021-07-15T22:15:44,727 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:44,727 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:15:44,727 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:15:44,727 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:44,727 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:15:44,728 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:44,766 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:15:44,766 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:44,951 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:44,951 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:45,495 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::MolproOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:45,495 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,496 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,496 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,496 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,496 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,496 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,496 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,497 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,497 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,497 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,498 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,498 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,498 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,498 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,498 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,499 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,499 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,499 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,500 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,500 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:45,500 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:45,501 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:15:45,502 from include/openbabel/mol.h:35, 2021-07-15T22:15:45,502 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:45,502 from ./src/formats/molproformat.cpp:20: 2021-07-15T22:15:45,502 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,502 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:45,502 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:45,503 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:45,503 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:15:45,503 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:15:46,713 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:46,713 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/molproformat.o /tmp/ccmA6Rzt.s 2021-07-15T22:15:46,718 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:47,181 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:47,182 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:47,182 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molproformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:47,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/molreport.cpp -o build/temp.linux-armv7l-3.9/./src/formats/molreport.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:47,194 Using built-in specs. 2021-07-15T22:15:47,195 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:47,196 Target: arm-linux-gnueabihf 2021-07-15T22:15:47,196 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:47,196 Thread model: posix 2021-07-15T22:15:47,196 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:47,197 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:47,198 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:47,200 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/molreport.cpp -quiet -dumpbase molreport.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/molreport.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cchDnzwR.s 2021-07-15T22:15:47,212 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:47,213 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:47,213 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:47,213 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:47,213 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:47,214 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:47,214 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:47,214 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:47,214 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:47,214 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:47,214 #include "..." search starts here: 2021-07-15T22:15:47,215 #include <...> search starts here: 2021-07-15T22:15:47,215 /usr/include/eigen3 2021-07-15T22:15:47,215 include 2021-07-15T22:15:47,215 /usr/include/python3.9 2021-07-15T22:15:47,215 /usr/include/c++/10 2021-07-15T22:15:47,215 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:47,215 /usr/include/c++/10/backward 2021-07-15T22:15:47,216 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:47,216 /usr/local/include 2021-07-15T22:15:47,216 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:47,216 /usr/include 2021-07-15T22:15:47,216 End of search list. 2021-07-15T22:15:47,216 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:47,216 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:47,217 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:47,230 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:48,606 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:48,607 from include/openbabel/mol.h:43, 2021-07-15T22:15:48,607 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:48,607 from ./src/formats/molreport.cpp:21: 2021-07-15T22:15:48,607 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:48,607 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:48,608 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:48,608 | ^ 2021-07-15T22:15:48,608 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:48,608 37 | # define UNUSED(x) x 2021-07-15T22:15:48,608 | ^ 2021-07-15T22:15:49,306 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:49,306 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:49,306 from ./src/formats/molreport.cpp:21: 2021-07-15T22:15:49,307 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:49,307 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:49,307 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:49,307 | ^ 2021-07-15T22:15:49,307 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:49,307 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:49,308 | ^~~~~~~~ 2021-07-15T22:15:49,310 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:49,310 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:49,310 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:49,310 | ^ 2021-07-15T22:15:49,310 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:49,311 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:49,311 | ^~~~~~~~ 2021-07-15T22:15:49,326 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:49,327 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:49,327 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:49,327 | ^ 2021-07-15T22:15:49,327 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:49,327 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:49,327 | ^~~~~~~~ 2021-07-15T22:15:49,331 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:49,332 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:49,332 from ./src/formats/molreport.cpp:21: 2021-07-15T22:15:49,332 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:49,332 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:49,332 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:49,332 | ^ 2021-07-15T22:15:49,332 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:49,333 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:49,333 | ^~~~~~~~ 2021-07-15T22:15:51,663 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:51,664 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/molreport.o /tmp/cchDnzwR.s 2021-07-15T22:15:51,669 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:15:51,866 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:15:51,866 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:15:51,866 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/molreport.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:51,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mopacformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:15:51,877 Using built-in specs. 2021-07-15T22:15:51,879 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:15:51,879 Target: arm-linux-gnueabihf 2021-07-15T22:15:51,879 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:15:51,880 Thread model: posix 2021-07-15T22:15:51,880 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:15:51,880 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:15:51,882 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:15:51,885 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mopacformat.cpp -quiet -dumpbase mopacformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccretVa6.s 2021-07-15T22:15:51,898 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:51,898 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:51,898 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:51,899 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:15:51,899 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:15:51,899 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:15:51,899 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:15:51,899 ignoring duplicate directory "/usr/include/" 2021-07-15T22:15:51,899 as it is a non-system directory that duplicates a system directory 2021-07-15T22:15:51,900 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:15:51,900 #include "..." search starts here: 2021-07-15T22:15:51,900 #include <...> search starts here: 2021-07-15T22:15:51,900 /usr/include/eigen3 2021-07-15T22:15:51,901 include 2021-07-15T22:15:51,901 /usr/include/python3.9 2021-07-15T22:15:51,901 /usr/include/c++/10 2021-07-15T22:15:51,901 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:15:51,901 /usr/include/c++/10/backward 2021-07-15T22:15:51,901 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:15:51,902 /usr/local/include 2021-07-15T22:15:51,902 /usr/include/arm-linux-gnueabihf 2021-07-15T22:15:51,902 /usr/include 2021-07-15T22:15:51,902 End of search list. 2021-07-15T22:15:51,902 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:15:51,903 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:15:51,903 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:15:51,919 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:15:53,296 In file included from include/openbabel/atom.h:33, 2021-07-15T22:15:53,296 from include/openbabel/mol.h:43, 2021-07-15T22:15:53,296 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:53,296 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:53,296 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:15:53,296 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:15:53,297 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:15:53,297 | ^ 2021-07-15T22:15:53,297 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:15:53,297 37 | # define UNUSED(x) x 2021-07-15T22:15:53,297 | ^ 2021-07-15T22:15:53,993 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:53,994 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:53,994 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:53,994 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:53,994 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:53,994 862 | {return new OBVibrationData(*this);} 2021-07-15T22:15:53,994 | ^ 2021-07-15T22:15:53,995 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:15:53,995 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:15:53,995 | ^~~~~~~~ 2021-07-15T22:15:53,997 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:53,997 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:53,998 907 | {return new OBDOSData(*this);} 2021-07-15T22:15:53,998 | ^ 2021-07-15T22:15:53,998 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:15:53,998 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:15:53,998 | ^~~~~~~~ 2021-07-15T22:15:54,014 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:54,014 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:54,014 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:15:54,014 | ^ 2021-07-15T22:15:54,015 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:15:54,015 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:15:54,015 | ^~~~~~~~ 2021-07-15T22:15:54,019 In file included from include/openbabel/mol.h:52, 2021-07-15T22:15:54,019 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:54,019 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:54,019 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:15:54,019 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:15:54,019 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:15:54,020 | ^ 2021-07-15T22:15:54,020 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:15:54,020 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:15:54,020 | ^~~~~~~~ 2021-07-15T22:15:54,361 ./src/formats/mopacformat.cpp: In member function ‘virtual bool OpenBabel::MOPACCARTFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:54,361 ./src/formats/mopacformat.cpp:642:19: warning: variable ‘isotopeMass’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:15:54,361 642 | double x,y,z, isotopeMass; 2021-07-15T22:15:54,361 | ^~~~~~~~~~~ 2021-07-15T22:15:58,688 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:58,688 from include/openbabel/mol.h:35, 2021-07-15T22:15:58,688 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:58,688 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:58,689 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:15:58,689 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:58,689 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:15:58,689 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:58,736 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:15:58,736 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:15:59,878 In file included from include/openbabel/atom.h:35, 2021-07-15T22:15:59,879 from include/openbabel/mol.h:43, 2021-07-15T22:15:59,879 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:59,879 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:59,879 include/openbabel/math/vector3.h: In member function ‘virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:15:59,879 include/openbabel/math/vector3.h:91:11: warning: ‘y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:59,879 91 | _vy = inY; 2021-07-15T22:15:59,879 | ~~~~^~~~~ 2021-07-15T22:15:59,880 ./src/formats/mopacformat.cpp:73:14: note: ‘y’ was declared here 2021-07-15T22:15:59,880 73 | double x,y,z; 2021-07-15T22:15:59,880 | ^ 2021-07-15T22:15:59,880 In file included from include/openbabel/atom.h:35, 2021-07-15T22:15:59,880 from include/openbabel/mol.h:43, 2021-07-15T22:15:59,880 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:59,880 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:59,881 include/openbabel/math/vector3.h:90:11: warning: ‘x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:15:59,881 90 | _vx = inX; 2021-07-15T22:15:59,881 | ~~~~^~~~~ 2021-07-15T22:15:59,881 ./src/formats/mopacformat.cpp:73:12: note: ‘x’ was declared here 2021-07-15T22:15:59,881 73 | double x,y,z; 2021-07-15T22:15:59,881 | ^ 2021-07-15T22:15:59,928 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:15:59,929 from include/openbabel/mol.h:35, 2021-07-15T22:15:59,929 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:15:59,929 from ./src/formats/mopacformat.cpp:17: 2021-07-15T22:15:59,929 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,929 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,929 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,930 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,931 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,931 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,932 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,932 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,933 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,937 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,937 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,937 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,939 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,939 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,939 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,939 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,939 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,940 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,940 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,940 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,940 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,941 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,941 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,941 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:15:59,942 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:15:59,943 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:15:59,943 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:02,820 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:02,821 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o /tmp/ccretVa6.s 2021-07-15T22:16:02,826 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:03,637 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:03,637 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:03,638 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mopacformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:03,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mpdformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:03,652 Using built-in specs. 2021-07-15T22:16:03,654 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:03,654 Target: arm-linux-gnueabihf 2021-07-15T22:16:03,654 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:03,654 Thread model: posix 2021-07-15T22:16:03,654 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:03,655 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:03,655 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:03,655 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mpdformat.cpp -quiet -dumpbase mpdformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccw7gJ9u.s 2021-07-15T22:16:03,669 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:03,669 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:03,669 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:03,670 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:03,670 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:03,671 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:03,671 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:03,671 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:03,671 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:03,671 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:03,672 #include "..." search starts here: 2021-07-15T22:16:03,672 #include <...> search starts here: 2021-07-15T22:16:03,672 /usr/include/eigen3 2021-07-15T22:16:03,672 include 2021-07-15T22:16:03,672 /usr/include/python3.9 2021-07-15T22:16:03,672 /usr/include/c++/10 2021-07-15T22:16:03,673 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:03,673 /usr/include/c++/10/backward 2021-07-15T22:16:03,673 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:03,673 /usr/local/include 2021-07-15T22:16:03,673 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:03,673 /usr/include 2021-07-15T22:16:03,674 End of search list. 2021-07-15T22:16:03,674 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:03,674 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:03,674 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:03,689 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:05,068 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:05,069 from include/openbabel/mol.h:43, 2021-07-15T22:16:05,069 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:05,069 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:16:05,069 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:05,069 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:05,069 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:05,070 | ^ 2021-07-15T22:16:05,070 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:05,070 37 | # define UNUSED(x) x 2021-07-15T22:16:05,070 | ^ 2021-07-15T22:16:05,767 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:05,767 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:05,768 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:16:05,768 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:05,768 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:05,768 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:05,768 | ^ 2021-07-15T22:16:05,768 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:05,768 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:05,769 | ^~~~~~~~ 2021-07-15T22:16:05,771 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:05,771 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:05,771 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:05,772 | ^ 2021-07-15T22:16:05,772 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:05,772 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:05,772 | ^~~~~~~~ 2021-07-15T22:16:05,788 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:05,788 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:05,788 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:05,788 | ^ 2021-07-15T22:16:05,788 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:05,789 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:05,789 | ^~~~~~~~ 2021-07-15T22:16:05,793 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:05,793 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:05,793 from ./src/formats/mpdformat.cpp:22: 2021-07-15T22:16:05,793 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:05,793 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:05,793 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:05,794 | ^ 2021-07-15T22:16:05,794 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:05,794 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:05,794 | ^~~~~~~~ 2021-07-15T22:16:06,103 ./src/formats/mpdformat.cpp: In member function ‘virtual bool OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:06,104 ./src/formats/mpdformat.cpp:204:42: warning: variable ‘idx_true’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:16:06,104 204 | bool xml_true=false, pre_true=false, idx_true=false; 2021-07-15T22:16:06,104 | ^~~~~~~~ 2021-07-15T22:16:08,491 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:08,491 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o /tmp/ccw7gJ9u.s 2021-07-15T22:16:08,496 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:08,738 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:08,739 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:08,739 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpdformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:08,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/mpqcformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:08,749 Using built-in specs. 2021-07-15T22:16:08,750 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:08,750 Target: arm-linux-gnueabihf 2021-07-15T22:16:08,751 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:08,751 Thread model: posix 2021-07-15T22:16:08,751 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:08,751 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:08,751 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:08,751 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/mpqcformat.cpp -quiet -dumpbase mpqcformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccGfRsEL.s 2021-07-15T22:16:08,762 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:08,762 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:08,763 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:08,763 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:08,763 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:08,763 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:08,763 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:08,763 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:08,763 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:08,764 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:08,764 #include "..." search starts here: 2021-07-15T22:16:08,764 #include <...> search starts here: 2021-07-15T22:16:08,764 /usr/include/eigen3 2021-07-15T22:16:08,764 include 2021-07-15T22:16:08,764 /usr/include/python3.9 2021-07-15T22:16:08,764 /usr/include/c++/10 2021-07-15T22:16:08,765 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:08,765 /usr/include/c++/10/backward 2021-07-15T22:16:08,765 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:08,765 /usr/local/include 2021-07-15T22:16:08,765 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:08,765 /usr/include 2021-07-15T22:16:08,766 End of search list. 2021-07-15T22:16:08,766 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:08,766 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:08,766 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:08,783 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:10,159 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:10,160 from include/openbabel/mol.h:43, 2021-07-15T22:16:10,160 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:10,160 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:16:10,160 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:10,160 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:10,160 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:10,160 | ^ 2021-07-15T22:16:10,161 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:10,161 37 | # define UNUSED(x) x 2021-07-15T22:16:10,161 | ^ 2021-07-15T22:16:10,855 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:10,855 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:10,856 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:16:10,856 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:10,856 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:10,856 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:10,856 | ^ 2021-07-15T22:16:10,856 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:10,857 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:10,857 | ^~~~~~~~ 2021-07-15T22:16:10,859 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:10,859 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:10,859 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:10,859 | ^ 2021-07-15T22:16:10,859 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:10,860 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:10,860 | ^~~~~~~~ 2021-07-15T22:16:10,875 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:10,876 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:10,876 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:10,876 | ^ 2021-07-15T22:16:10,876 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:10,876 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:10,876 | ^~~~~~~~ 2021-07-15T22:16:10,880 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:10,880 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:10,881 from ./src/formats/mpqcformat.cpp:16: 2021-07-15T22:16:10,881 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:10,881 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:10,881 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:10,881 | ^ 2021-07-15T22:16:10,881 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:10,881 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:10,882 | ^~~~~~~~ 2021-07-15T22:16:13,429 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:13,429 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o /tmp/ccGfRsEL.s 2021-07-15T22:16:13,434 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:13,643 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:13,644 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:13,644 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/mpqcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:13,645 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/msiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/msiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:13,654 Using built-in specs. 2021-07-15T22:16:13,655 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:13,656 Target: arm-linux-gnueabihf 2021-07-15T22:16:13,656 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:13,656 Thread model: posix 2021-07-15T22:16:13,656 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:13,656 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:13,656 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:13,657 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/msiformat.cpp -quiet -dumpbase msiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/msiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwPQBmY.s 2021-07-15T22:16:13,668 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:13,668 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:13,668 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:13,669 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:13,669 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:13,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:13,669 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:13,669 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:13,669 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:13,669 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:13,670 #include "..." search starts here: 2021-07-15T22:16:13,670 #include <...> search starts here: 2021-07-15T22:16:13,670 /usr/include/eigen3 2021-07-15T22:16:13,670 include 2021-07-15T22:16:13,670 /usr/include/python3.9 2021-07-15T22:16:13,670 /usr/include/c++/10 2021-07-15T22:16:13,670 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:13,670 /usr/include/c++/10/backward 2021-07-15T22:16:13,671 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:13,671 /usr/local/include 2021-07-15T22:16:13,671 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:13,671 /usr/include 2021-07-15T22:16:13,671 End of search list. 2021-07-15T22:16:13,671 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:13,672 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:13,672 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:13,685 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:15,056 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:15,056 from include/openbabel/mol.h:43, 2021-07-15T22:16:15,057 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:15,057 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:16:15,057 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:15,057 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:15,057 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:15,057 | ^ 2021-07-15T22:16:15,057 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:15,058 37 | # define UNUSED(x) x 2021-07-15T22:16:15,058 | ^ 2021-07-15T22:16:15,752 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:15,753 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:15,753 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:16:15,753 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:15,753 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:15,753 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:15,753 | ^ 2021-07-15T22:16:15,754 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:15,754 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:15,754 | ^~~~~~~~ 2021-07-15T22:16:15,756 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:15,756 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:15,757 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:15,757 | ^ 2021-07-15T22:16:15,757 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:15,757 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:15,757 | ^~~~~~~~ 2021-07-15T22:16:15,773 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:15,773 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:15,773 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:15,773 | ^ 2021-07-15T22:16:15,773 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:15,774 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:15,774 | ^~~~~~~~ 2021-07-15T22:16:15,778 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:15,778 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:15,778 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:16:15,778 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:15,778 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:15,778 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:15,778 | ^ 2021-07-15T22:16:15,779 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:15,779 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:15,779 | ^~~~~~~~ 2021-07-15T22:16:16,077 ./src/formats/msiformat.cpp: In member function ‘virtual bool OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:16,078 ./src/formats/msiformat.cpp:71:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:16:16,078 71 | const char* title = pConv->GetTitle(); 2021-07-15T22:16:16,078 | ^~~~~ 2021-07-15T22:16:18,183 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:18,183 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:18,183 from ./src/formats/msiformat.cpp:15: 2021-07-15T22:16:18,184 include/openbabel/generic.h:366:60: warning: ‘sg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:18,184 366 | void SetSpaceGroup(const SpaceGroup* sg) { _spaceGroup = sg; } 2021-07-15T22:16:18,184 | ~~~~~~~~~~~~^~~~ 2021-07-15T22:16:18,184 ./src/formats/msiformat.cpp:106:23: note: ‘sg’ was declared here 2021-07-15T22:16:18,184 106 | const SpaceGroup *sg; 2021-07-15T22:16:18,184 | ^~ 2021-07-15T22:16:18,184 ./src/formats/msiformat.cpp:189:28: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:18,184 189 | atom->SetVector(atof(vs[3].c_str()), 2021-07-15T22:16:18,185 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:18,185 190 | atof(vs[4].c_str()), 2021-07-15T22:16:18,185 | ~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:18,185 191 | atof(vs[5].c_str())); 2021-07-15T22:16:18,185 | ~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:18,185 ./src/formats/msiformat.cpp:235:24: warning: ‘bondOrder’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:18,185 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:16:18,186 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:18,186 ./src/formats/msiformat.cpp:235:56: warning: ‘endBondAtom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:18,186 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:16:18,186 | ~~~~~~~~~~~~^~~ 2021-07-15T22:16:18,186 ./src/formats/msiformat.cpp:235:39: warning: ‘startBondAtom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:18,186 235 | mol.AddBond(startBondAtom - 1, endBondAtom - 1, bondOrder); 2021-07-15T22:16:18,186 | ~~~~~~~~~~~~~~^~~ 2021-07-15T22:16:18,811 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:18,812 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/msiformat.o /tmp/ccwPQBmY.s 2021-07-15T22:16:18,818 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:19,084 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:19,084 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:19,085 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:19,087 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/msmsformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:19,098 Using built-in specs. 2021-07-15T22:16:19,099 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:19,100 Target: arm-linux-gnueabihf 2021-07-15T22:16:19,100 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:19,100 Thread model: posix 2021-07-15T22:16:19,100 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:19,101 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:19,102 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:19,105 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/msmsformat.cpp -quiet -dumpbase msmsformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccoOyWVd.s 2021-07-15T22:16:19,118 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:19,119 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:19,119 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:19,119 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:19,119 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:19,119 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:19,120 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:19,120 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:19,120 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:19,120 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:19,120 #include "..." search starts here: 2021-07-15T22:16:19,121 #include <...> search starts here: 2021-07-15T22:16:19,121 /usr/include/eigen3 2021-07-15T22:16:19,121 include 2021-07-15T22:16:19,121 /usr/include/python3.9 2021-07-15T22:16:19,121 /usr/include/c++/10 2021-07-15T22:16:19,121 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:19,122 /usr/include/c++/10/backward 2021-07-15T22:16:19,122 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:19,122 /usr/local/include 2021-07-15T22:16:19,122 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:19,122 /usr/include 2021-07-15T22:16:19,122 End of search list. 2021-07-15T22:16:19,123 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:19,123 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:19,123 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:19,137 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:20,504 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:20,504 from include/openbabel/mol.h:43, 2021-07-15T22:16:20,504 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:16:20,505 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:20,505 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:20,505 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:20,505 | ^ 2021-07-15T22:16:20,505 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:20,505 37 | # define UNUSED(x) x 2021-07-15T22:16:20,505 | ^ 2021-07-15T22:16:21,198 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:21,198 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:16:21,199 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:21,199 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:21,199 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:21,199 | ^ 2021-07-15T22:16:21,199 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:21,199 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:21,200 | ^~~~~~~~ 2021-07-15T22:16:21,202 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:21,202 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:21,202 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:21,202 | ^ 2021-07-15T22:16:21,203 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:21,203 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:21,203 | ^~~~~~~~ 2021-07-15T22:16:21,218 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:21,219 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:21,219 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:21,219 | ^ 2021-07-15T22:16:21,219 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:21,219 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:21,219 | ^~~~~~~~ 2021-07-15T22:16:21,223 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:21,223 from ./src/formats/msmsformat.cpp:26: 2021-07-15T22:16:21,224 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:21,224 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:21,224 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:21,224 | ^ 2021-07-15T22:16:21,224 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:21,224 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:21,224 | ^~~~~~~~ 2021-07-15T22:16:21,510 ./src/formats/msmsformat.cpp: In member function ‘virtual int OpenBabel::OBMSMSFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:16:21,510 ./src/formats/msmsformat.cpp:82:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:16:21,510 82 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:16:21,510 | ~~~~^ 2021-07-15T22:16:21,511 ./src/formats/msmsformat.cpp:82:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:16:21,511 82 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:16:21,511 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:16:23,462 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:23,462 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o /tmp/ccoOyWVd.s 2021-07-15T22:16:23,467 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:23,645 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:23,645 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:23,645 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/msmsformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:23,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/nulformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/nulformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:23,655 Using built-in specs. 2021-07-15T22:16:23,657 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:23,657 Target: arm-linux-gnueabihf 2021-07-15T22:16:23,657 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:23,658 Thread model: posix 2021-07-15T22:16:23,658 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:23,658 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:23,659 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:23,663 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/nulformat.cpp -quiet -dumpbase nulformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/nulformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccyUOtEr.s 2021-07-15T22:16:23,676 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:23,676 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:23,677 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:23,677 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:23,677 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:23,677 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:23,677 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:23,678 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:23,678 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:23,678 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:23,678 #include "..." search starts here: 2021-07-15T22:16:23,678 #include <...> search starts here: 2021-07-15T22:16:23,679 /usr/include/eigen3 2021-07-15T22:16:23,679 include 2021-07-15T22:16:23,679 /usr/include/python3.9 2021-07-15T22:16:23,679 /usr/include/c++/10 2021-07-15T22:16:23,679 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:23,679 /usr/include/c++/10/backward 2021-07-15T22:16:23,680 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:23,680 /usr/local/include 2021-07-15T22:16:23,680 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:23,680 /usr/include 2021-07-15T22:16:23,680 End of search list. 2021-07-15T22:16:23,681 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:23,681 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:23,681 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:23,697 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:25,085 In file included from ./src/formats/nulformat.cpp:15: 2021-07-15T22:16:25,085 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:25,085 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:25,086 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:25,086 | ^ 2021-07-15T22:16:25,086 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:25,086 37 | # define UNUSED(x) x 2021-07-15T22:16:25,086 | ^ 2021-07-15T22:16:25,850 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:25,851 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/nulformat.o /tmp/ccyUOtEr.s 2021-07-15T22:16:25,857 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:25,959 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:25,959 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:25,959 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nulformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:25,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/nwchemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:25,970 Using built-in specs. 2021-07-15T22:16:25,971 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:25,971 Target: arm-linux-gnueabihf 2021-07-15T22:16:25,971 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:25,972 Thread model: posix 2021-07-15T22:16:25,972 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:25,972 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:25,972 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:25,972 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/nwchemformat.cpp -quiet -dumpbase nwchemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccfJIzwG.s 2021-07-15T22:16:25,985 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:25,985 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:25,986 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:25,986 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:25,986 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:25,986 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:25,986 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:25,987 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:25,987 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:25,987 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:25,987 #include "..." search starts here: 2021-07-15T22:16:25,987 #include <...> search starts here: 2021-07-15T22:16:25,988 /usr/include/eigen3 2021-07-15T22:16:25,988 include 2021-07-15T22:16:25,988 /usr/include/python3.9 2021-07-15T22:16:25,988 /usr/include/c++/10 2021-07-15T22:16:25,988 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:25,988 /usr/include/c++/10/backward 2021-07-15T22:16:25,989 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:25,989 /usr/local/include 2021-07-15T22:16:25,989 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:25,989 /usr/include 2021-07-15T22:16:25,989 End of search list. 2021-07-15T22:16:25,989 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:25,990 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:25,990 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:26,007 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:27,384 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:27,384 from include/openbabel/mol.h:43, 2021-07-15T22:16:27,384 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:27,384 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:27,384 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:27,385 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:27,385 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:27,385 | ^ 2021-07-15T22:16:27,385 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:27,385 37 | # define UNUSED(x) x 2021-07-15T22:16:27,385 | ^ 2021-07-15T22:16:28,083 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:28,083 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:28,083 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:28,083 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:28,084 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:28,084 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:28,084 | ^ 2021-07-15T22:16:28,084 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:28,084 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:28,084 | ^~~~~~~~ 2021-07-15T22:16:28,087 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:28,087 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:28,087 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:28,087 | ^ 2021-07-15T22:16:28,087 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:28,087 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:28,088 | ^~~~~~~~ 2021-07-15T22:16:28,103 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:28,104 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:28,104 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:28,104 | ^ 2021-07-15T22:16:28,104 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:28,104 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:28,104 | ^~~~~~~~ 2021-07-15T22:16:28,108 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:28,108 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:28,108 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:28,109 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:28,109 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:28,109 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:28,109 | ^ 2021-07-15T22:16:28,109 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:28,109 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:28,109 | ^~~~~~~~ 2021-07-15T22:16:28,405 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,405 ./src/formats/nwchemformat.cpp:221:72: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:16:28,406 221 | if ((i>=natoms) || (molecule->GetAtom(i+1)->GetAtomicNum() != atoi(vs[2].c_str()))) 2021-07-15T22:16:28,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:28,410 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMultipoleMoment(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,410 ./src/formats/nwchemformat.cpp:296:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2021-07-15T22:16:28,410 296 | else if (vs[0][0] == '1') 2021-07-15T22:16:28,410 | ^ 2021-07-15T22:16:28,414 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,414 ./src/formats/nwchemformat.cpp:413:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:16:28,414 413 | if (molecule->GetAtom(i++)->GetAtomicNum() != charge) 2021-07-15T22:16:28,414 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:16:28,422 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,422 ./src/formats/nwchemformat.cpp:561:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:16:28,422 561 | if (energies.size() != molecule->NumConformers()) 2021-07-15T22:16:28,422 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:28,459 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,459 ./src/formats/nwchemformat.cpp:826:79: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:16:28,459 826 | if (etab.GetAtomicNum(vs[1].substr(0, end_of_symbol).c_str()) != molecule->GetAtom(i+1)->GetAtomicNum()) 2021-07-15T22:16:28,459 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:28,465 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:28,466 ./src/formats/nwchemformat.cpp:914:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:16:28,466 914 | if (atoi(buffer) != natoms) 2021-07-15T22:16:28,466 | ~~~~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:16:28,466 ./src/formats/nwchemformat.cpp:924:84: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:16:28,466 924 | if ((vs.size() < 4) || (molecule->GetAtom(i+1)->GetAtomicNum() != etab.GetAtomicNum(vs[0].c_str()))) 2021-07-15T22:16:28,466 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:29,738 ./src/formats/nwchemformat.cpp: At global scope: 2021-07-15T22:16:29,739 ./src/formats/nwchemformat.cpp:104:20: warning: ‘OpenBabel::BETA_ORBITAL_PATTERN’ defined but not used [-Wunused-variable] 2021-07-15T22:16:29,739 104 | static const char* BETA_ORBITAL_PATTERN = "Beta"; 2021-07-15T22:16:29,739 | ^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:32,002 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadCoordinates(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:32,002 ./src/formats/nwchemformat.cpp:237:18: warning: ‘coordinates’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:32,002 237 | delete[] coordinates; 2021-07-15T22:16:32,002 | ^~~~~~~~~~~ 2021-07-15T22:16:33,365 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:33,365 from include/openbabel/mol.h:35, 2021-07-15T22:16:33,365 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:33,365 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:33,366 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:16:33,366 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:33,366 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:16:33,366 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:33,366 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:33,534 ./src/formats/nwchemformat.cpp: In member function ‘void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:33,534 ./src/formats/nwchemformat.cpp:939:21: warning: ‘nbeads’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:33,534 939 | if (bead_number != nbeads) 2021-07-15T22:16:33,535 | ^~ 2021-07-15T22:16:33,542 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:16:33,543 from include/openbabel/mol.h:35, 2021-07-15T22:16:33,543 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:33,543 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:33,543 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:33,543 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:16:33,543 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:33,952 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:33,952 from include/openbabel/mol.h:35, 2021-07-15T22:16:33,952 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:33,952 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:33,952 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:16:33,953 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:33,953 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:16:33,953 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:34,920 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2021-07-15T22:16:34,920 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:35,652 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:16:35,652 from include/openbabel/mol.h:35, 2021-07-15T22:16:35,652 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:35,652 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:35,652 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:35,653 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:35,653 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:16:35,653 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:36,379 In file included from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:36,380 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:36,380 include/openbabel/mol.h: In member function ‘void OpenBabel::NWChemOutputFormat::ReadSinglePointCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:36,380 include/openbabel/mol.h:418:47: warning: ‘energy’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:36,380 418 | void SetEnergy(double energy) { _energy = energy; } 2021-07-15T22:16:36,380 | ~~~~~~~~^~~~~~~~ 2021-07-15T22:16:36,380 ./src/formats/nwchemformat.cpp:736:12: note: ‘energy’ was declared here 2021-07-15T22:16:36,380 736 | double energy; 2021-07-15T22:16:36,381 | ^~~~~~ 2021-07-15T22:16:36,665 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:36,666 from include/openbabel/mol.h:35, 2021-07-15T22:16:36,666 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:36,666 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:36,666 /usr/include/c++/10/bits/vector.tcc: In member function ‘void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)’: 2021-07-15T22:16:36,666 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:36,666 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:36,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:36,667 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:16:36,667 from include/openbabel/mol.h:35, 2021-07-15T22:16:36,667 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:36,667 from ./src/formats/nwchemformat.cpp:17: 2021-07-15T22:16:36,667 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:36,667 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:16:36,667 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:38,038 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:38,039 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o /tmp/ccfJIzwG.s 2021-07-15T22:16:38,046 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:39,120 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:39,120 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:39,121 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/nwchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:39,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/opendxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:39,136 Using built-in specs. 2021-07-15T22:16:39,137 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:39,137 Target: arm-linux-gnueabihf 2021-07-15T22:16:39,138 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:39,138 Thread model: posix 2021-07-15T22:16:39,138 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:39,138 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:39,138 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:39,138 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/opendxformat.cpp -quiet -dumpbase opendxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccJREAKU.s 2021-07-15T22:16:39,153 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:39,153 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:39,154 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:39,154 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:39,154 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:39,155 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:39,155 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:39,155 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:39,155 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:39,155 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:39,156 #include "..." search starts here: 2021-07-15T22:16:39,156 #include <...> search starts here: 2021-07-15T22:16:39,156 /usr/include/eigen3 2021-07-15T22:16:39,156 include 2021-07-15T22:16:39,156 /usr/include/python3.9 2021-07-15T22:16:39,157 /usr/include/c++/10 2021-07-15T22:16:39,157 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:39,157 /usr/include/c++/10/backward 2021-07-15T22:16:39,157 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:39,157 /usr/local/include 2021-07-15T22:16:39,157 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:39,157 /usr/include 2021-07-15T22:16:39,158 End of search list. 2021-07-15T22:16:39,158 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:39,158 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:39,158 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:39,172 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:40,528 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:40,528 from include/openbabel/mol.h:43, 2021-07-15T22:16:40,528 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:40,528 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:16:40,529 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:40,529 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:40,529 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:40,529 | ^ 2021-07-15T22:16:40,529 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:40,529 37 | # define UNUSED(x) x 2021-07-15T22:16:40,529 | ^ 2021-07-15T22:16:41,225 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:41,226 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:41,226 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:16:41,226 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:41,226 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:41,226 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:41,226 | ^ 2021-07-15T22:16:41,226 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:41,227 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:41,227 | ^~~~~~~~ 2021-07-15T22:16:41,229 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:41,229 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:41,229 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:41,230 | ^ 2021-07-15T22:16:41,230 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:41,230 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:41,230 | ^~~~~~~~ 2021-07-15T22:16:41,245 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:41,246 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:41,246 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:41,246 | ^ 2021-07-15T22:16:41,246 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:41,246 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:41,246 | ^~~~~~~~ 2021-07-15T22:16:41,250 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:41,250 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:41,251 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:16:41,251 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:41,251 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:41,251 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:41,251 | ^ 2021-07-15T22:16:41,251 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:41,252 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:41,252 | ^~~~~~~~ 2021-07-15T22:16:41,541 ./src/formats/opendxformat.cpp: In member function ‘virtual int OpenBabel::OBOpenDXCubeFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:16:41,541 ./src/formats/opendxformat.cpp:65:34: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:16:41,541 65 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:16:41,541 | ~~~~^ 2021-07-15T22:16:41,542 ./src/formats/opendxformat.cpp:65:62: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:16:41,542 65 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:16:41,542 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:16:44,111 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:44,112 from include/openbabel/mol.h:35, 2021-07-15T22:16:44,112 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:44,112 from ./src/formats/opendxformat.cpp:24: 2021-07-15T22:16:44,112 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:16:44,112 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:44,112 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:16:44,112 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:44,161 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:16:44,162 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:44,343 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::OBOpenDXCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:44,343 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:44,344 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:44,344 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:44,351 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:44,352 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:44,352 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:44,990 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:44,990 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o /tmp/ccJREAKU.s 2021-07-15T22:16:44,998 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:45,310 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:45,310 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:45,311 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/opendxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:45,316 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/orcaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:45,322 Using built-in specs. 2021-07-15T22:16:45,323 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:45,323 Target: arm-linux-gnueabihf 2021-07-15T22:16:45,323 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:45,324 Thread model: posix 2021-07-15T22:16:45,324 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:45,324 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:45,325 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:45,327 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/orcaformat.cpp -quiet -dumpbase orcaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccwUK8A8.s 2021-07-15T22:16:45,340 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:45,340 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:45,340 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:45,341 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:45,342 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:45,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:45,342 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:45,342 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:45,343 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:45,343 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:45,343 #include "..." search starts here: 2021-07-15T22:16:45,343 #include <...> search starts here: 2021-07-15T22:16:45,343 /usr/include/eigen3 2021-07-15T22:16:45,343 include 2021-07-15T22:16:45,344 /usr/include/python3.9 2021-07-15T22:16:45,344 /usr/include/c++/10 2021-07-15T22:16:45,344 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:45,344 /usr/include/c++/10/backward 2021-07-15T22:16:45,344 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:45,344 /usr/local/include 2021-07-15T22:16:45,344 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:45,345 /usr/include 2021-07-15T22:16:45,345 End of search list. 2021-07-15T22:16:45,345 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:45,345 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:45,345 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:45,359 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:16:46,739 In file included from include/openbabel/atom.h:33, 2021-07-15T22:16:46,740 from include/openbabel/mol.h:43, 2021-07-15T22:16:46,740 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:46,740 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:46,740 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:16:46,740 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:16:46,740 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:16:46,741 | ^ 2021-07-15T22:16:46,741 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:16:46,741 37 | # define UNUSED(x) x 2021-07-15T22:16:46,741 | ^ 2021-07-15T22:16:47,436 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:47,437 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:47,437 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:47,437 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:47,437 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:47,437 862 | {return new OBVibrationData(*this);} 2021-07-15T22:16:47,437 | ^ 2021-07-15T22:16:47,438 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:16:47,438 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:16:47,438 | ^~~~~~~~ 2021-07-15T22:16:47,440 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:47,440 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:47,440 907 | {return new OBDOSData(*this);} 2021-07-15T22:16:47,441 | ^ 2021-07-15T22:16:47,441 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:16:47,441 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:16:47,441 | ^~~~~~~~ 2021-07-15T22:16:47,457 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:47,457 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:47,457 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:16:47,457 | ^ 2021-07-15T22:16:47,457 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:16:47,458 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:16:47,458 | ^~~~~~~~ 2021-07-15T22:16:47,462 In file included from include/openbabel/mol.h:52, 2021-07-15T22:16:47,462 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:47,462 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:47,462 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:16:47,462 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:16:47,462 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:16:47,463 | ^ 2021-07-15T22:16:47,463 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:16:47,463 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:16:47,463 | ^~~~~~~~ 2021-07-15T22:16:47,912 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:47,912 ./src/formats/orcaformat.cpp:338:33: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:16:47,912 338 | while(vs.size() == nColumn+1) { 2021-07-15T22:16:47,912 | ~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:47,914 ./src/formats/orcaformat.cpp:353:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:16:47,914 353 | for (unsigned int i = 0; i < nColumn; i++) { 2021-07-15T22:16:47,914 | ~~^~~~~~~~~ 2021-07-15T22:16:47,915 ./src/formats/orcaformat.cpp:365:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:16:47,915 365 | for (unsigned int i = 0; i < nColumn; i++) { 2021-07-15T22:16:47,915 | ~~^~~~~~~~~ 2021-07-15T22:16:47,926 ./src/formats/orcaformat.cpp:121:12: warning: unused variable ‘energy’ [-Wunused-variable] 2021-07-15T22:16:47,927 121 | double energy=0; 2021-07-15T22:16:47,927 | ^~~~~~ 2021-07-15T22:16:47,927 ./src/formats/orcaformat.cpp:128:9: warning: variable ‘nModeAll’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:16:47,927 128 | int nModeAll = 0; 2021-07-15T22:16:47,927 | ^~~~~~~~ 2021-07-15T22:16:47,945 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:47,945 ./src/formats/orcaformat.cpp:646:10: warning: unused variable ‘buffer’ [-Wunused-variable] 2021-07-15T22:16:47,945 646 | char buffer[BUFF_SIZE]; 2021-07-15T22:16:47,945 | ^~~~~~ 2021-07-15T22:16:51,594 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:51,594 from include/openbabel/mol.h:35, 2021-07-15T22:16:51,594 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:51,594 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:51,594 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:16:51,594 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:51,595 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:16:51,595 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:51,642 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:16:51,642 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:52,132 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator]’: 2021-07-15T22:16:52,133 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:16:53,590 ./src/formats/orcaformat.cpp: In member function ‘virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:16:53,591 ./src/formats/orcaformat.cpp:210:36: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:53,591 210 | atom->SetVector(x,y,z); //set atom coordinates 2021-07-15T22:16:53,591 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:16:53,592 ./src/formats/orcaformat.cpp:207:37: warning: ‘confCoords’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:16:53,592 207 | confCoords[i*3+2] = z; 2021-07-15T22:16:53,592 | ^ 2021-07-15T22:16:53,656 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:16:53,656 from include/openbabel/mol.h:35, 2021-07-15T22:16:53,656 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:53,656 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:53,656 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,657 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,657 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,657 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,657 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,657 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,657 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,657 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,658 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,658 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,658 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,658 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,658 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,658 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,658 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,659 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,659 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,659 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,661 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,661 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,661 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,665 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,665 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,665 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,667 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,667 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,667 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,669 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,669 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,671 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,671 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,671 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,675 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,676 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,676 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,676 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,676 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,676 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,677 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,678 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,678 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,679 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,679 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,680 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,680 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,680 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,680 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,680 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,680 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,680 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,682 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,682 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,682 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,682 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,682 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,682 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,683 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,683 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,683 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,684 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,684 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,684 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,685 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,685 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,685 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,685 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,685 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,685 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,686 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,686 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:16:53,686 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:16:53,692 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:16:53,692 from include/openbabel/mol.h:35, 2021-07-15T22:16:53,693 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:16:53,693 from ./src/formats/orcaformat.cpp:18: 2021-07-15T22:16:53,693 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,693 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:16:53,693 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:53,694 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:16:53,694 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:16:53,694 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:16:57,891 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:57,891 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o /tmp/ccwUK8A8.s 2021-07-15T22:16:57,896 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:16:58,856 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:16:58,856 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:16:58,856 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/orcaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:58,860 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/outformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/outformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:16:58,870 Using built-in specs. 2021-07-15T22:16:58,871 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:16:58,871 Target: arm-linux-gnueabihf 2021-07-15T22:16:58,871 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:16:58,872 Thread model: posix 2021-07-15T22:16:58,872 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:16:58,872 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:16:58,872 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:16:58,872 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/outformat.cpp -quiet -dumpbase outformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/outformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccLLMRAk.s 2021-07-15T22:16:58,885 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:58,886 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:58,886 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:58,886 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:16:58,886 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:16:58,886 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:16:58,887 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:16:58,887 ignoring duplicate directory "/usr/include/" 2021-07-15T22:16:58,887 as it is a non-system directory that duplicates a system directory 2021-07-15T22:16:58,887 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:16:58,887 #include "..." search starts here: 2021-07-15T22:16:58,888 #include <...> search starts here: 2021-07-15T22:16:58,888 /usr/include/eigen3 2021-07-15T22:16:58,888 include 2021-07-15T22:16:58,888 /usr/include/python3.9 2021-07-15T22:16:58,888 /usr/include/c++/10 2021-07-15T22:16:58,888 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:16:58,888 /usr/include/c++/10/backward 2021-07-15T22:16:58,889 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:16:58,889 /usr/local/include 2021-07-15T22:16:58,889 /usr/include/arm-linux-gnueabihf 2021-07-15T22:16:58,889 /usr/include 2021-07-15T22:16:58,889 End of search list. 2021-07-15T22:16:58,889 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:16:58,890 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:16:58,890 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:16:58,905 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:00,274 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:00,274 from include/openbabel/mol.h:43, 2021-07-15T22:17:00,274 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:00,274 from ./src/formats/outformat.cpp:16: 2021-07-15T22:17:00,274 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:00,275 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:00,275 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:00,275 | ^ 2021-07-15T22:17:00,275 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:00,275 37 | # define UNUSED(x) x 2021-07-15T22:17:00,275 | ^ 2021-07-15T22:17:00,972 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:00,973 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:00,973 from ./src/formats/outformat.cpp:16: 2021-07-15T22:17:00,973 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:00,973 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:00,973 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:00,973 | ^ 2021-07-15T22:17:00,973 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:00,974 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:00,974 | ^~~~~~~~ 2021-07-15T22:17:00,976 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:00,976 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:00,976 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:00,976 | ^ 2021-07-15T22:17:00,977 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:00,977 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:00,977 | ^~~~~~~~ 2021-07-15T22:17:00,993 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:00,993 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:00,993 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:00,993 | ^ 2021-07-15T22:17:00,993 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:00,994 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:00,994 | ^~~~~~~~ 2021-07-15T22:17:00,998 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:00,998 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:00,998 from ./src/formats/outformat.cpp:16: 2021-07-15T22:17:00,998 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:00,998 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:00,998 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:00,999 | ^ 2021-07-15T22:17:00,999 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:00,999 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:00,999 | ^~~~~~~~ 2021-07-15T22:17:03,676 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:03,676 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/outformat.o /tmp/ccLLMRAk.s 2021-07-15T22:17:03,681 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:03,909 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:03,910 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:03,910 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/outformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:03,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/painterformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/painterformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:03,920 Using built-in specs. 2021-07-15T22:17:03,922 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:03,922 Target: arm-linux-gnueabihf 2021-07-15T22:17:03,922 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:03,922 Thread model: posix 2021-07-15T22:17:03,922 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:03,922 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:03,923 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:03,923 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/painterformat.cpp -quiet -dumpbase painterformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/painterformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cccT2Goc.s 2021-07-15T22:17:03,937 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:03,937 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:03,937 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:03,938 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:03,938 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:03,939 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:03,939 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:03,939 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:03,939 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:03,939 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:03,940 #include "..." search starts here: 2021-07-15T22:17:03,940 #include <...> search starts here: 2021-07-15T22:17:03,940 /usr/include/eigen3 2021-07-15T22:17:03,940 include 2021-07-15T22:17:03,940 /usr/include/python3.9 2021-07-15T22:17:03,941 /usr/include/c++/10 2021-07-15T22:17:03,941 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:03,941 /usr/include/c++/10/backward 2021-07-15T22:17:03,941 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:03,941 /usr/local/include 2021-07-15T22:17:03,941 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:03,942 /usr/include 2021-07-15T22:17:03,942 End of search list. 2021-07-15T22:17:03,942 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:03,942 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:03,943 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:03,956 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:05,325 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:05,325 from include/openbabel/mol.h:43, 2021-07-15T22:17:05,325 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:05,325 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:17:05,326 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:05,326 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:05,326 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:05,326 | ^ 2021-07-15T22:17:05,326 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:05,326 37 | # define UNUSED(x) x 2021-07-15T22:17:05,326 | ^ 2021-07-15T22:17:06,021 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:06,021 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:06,021 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:17:06,022 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:06,022 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:06,022 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:06,022 | ^ 2021-07-15T22:17:06,022 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:06,022 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:06,022 | ^~~~~~~~ 2021-07-15T22:17:06,025 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:06,025 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:06,025 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:06,025 | ^ 2021-07-15T22:17:06,025 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:06,026 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:06,026 | ^~~~~~~~ 2021-07-15T22:17:06,041 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:06,041 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:06,042 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:06,042 | ^ 2021-07-15T22:17:06,042 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:06,042 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:06,042 | ^~~~~~~~ 2021-07-15T22:17:06,046 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:06,046 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:06,046 from ./src/formats/painterformat.cpp:19: 2021-07-15T22:17:06,046 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:06,047 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:06,047 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:06,047 | ^ 2021-07-15T22:17:06,047 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:06,047 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:06,047 | ^~~~~~~~ 2021-07-15T22:17:06,353 In file included from ./src/formats/painterformat.cpp:22: 2021-07-15T22:17:06,353 include/openbabel/depict/commandpainter.h: In member function ‘virtual void OpenBabel::CommandPainter::SetFontFamily(const string&)’: 2021-07-15T22:17:06,354 include/openbabel/depict/commandpainter.h:34:45: warning: unused parameter ‘fontFamily’ [-Wunused-parameter] 2021-07-15T22:17:06,354 34 | void SetFontFamily(const std::string &fontFamily) {} // FIXME 2021-07-15T22:17:06,354 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:17:06,359 ./src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:06,359 ./src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 2021-07-15T22:17:06,359 113 | ostream& ofs = *pConv->GetOutStream(); 2021-07-15T22:17:06,359 | ^~~ 2021-07-15T22:17:08,531 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:08,531 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/painterformat.o /tmp/cccT2Goc.s 2021-07-15T22:17:08,536 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:08,763 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:08,764 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:08,764 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/painterformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:08,766 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pcmodelformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:08,774 Using built-in specs. 2021-07-15T22:17:08,775 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:08,775 Target: arm-linux-gnueabihf 2021-07-15T22:17:08,776 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:08,776 Thread model: posix 2021-07-15T22:17:08,776 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:08,776 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:08,776 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:08,776 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pcmodelformat.cpp -quiet -dumpbase pcmodelformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc97gqBn.s 2021-07-15T22:17:08,788 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:08,788 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:08,788 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:08,788 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:08,788 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:08,789 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:08,789 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:08,789 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:08,789 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:08,789 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:08,789 #include "..." search starts here: 2021-07-15T22:17:08,790 #include <...> search starts here: 2021-07-15T22:17:08,790 /usr/include/eigen3 2021-07-15T22:17:08,790 include 2021-07-15T22:17:08,790 /usr/include/python3.9 2021-07-15T22:17:08,790 /usr/include/c++/10 2021-07-15T22:17:08,790 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:08,790 /usr/include/c++/10/backward 2021-07-15T22:17:08,790 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:08,791 /usr/local/include 2021-07-15T22:17:08,791 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:08,791 /usr/include 2021-07-15T22:17:08,791 End of search list. 2021-07-15T22:17:08,791 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:08,791 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:08,792 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:08,805 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:10,176 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:10,176 from include/openbabel/mol.h:43, 2021-07-15T22:17:10,177 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:10,177 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:17:10,177 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:10,177 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:10,177 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:10,177 | ^ 2021-07-15T22:17:10,177 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:10,178 37 | # define UNUSED(x) x 2021-07-15T22:17:10,178 | ^ 2021-07-15T22:17:10,874 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:10,874 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:10,874 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:17:10,874 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:10,875 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:10,875 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:10,875 | ^ 2021-07-15T22:17:10,875 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:10,875 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:10,875 | ^~~~~~~~ 2021-07-15T22:17:10,878 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:10,878 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:10,878 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:10,878 | ^ 2021-07-15T22:17:10,878 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:10,878 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:10,879 | ^~~~~~~~ 2021-07-15T22:17:10,894 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:10,894 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:10,895 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:10,895 | ^ 2021-07-15T22:17:10,895 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:10,895 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:10,895 | ^~~~~~~~ 2021-07-15T22:17:10,899 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:10,899 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:10,899 from ./src/formats/pcmodelformat.cpp:16: 2021-07-15T22:17:10,899 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:10,900 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:10,900 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:10,900 | ^ 2021-07-15T22:17:10,900 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:10,900 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:10,900 | ^~~~~~~~ 2021-07-15T22:17:13,946 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:13,947 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o /tmp/cc97gqBn.s 2021-07-15T22:17:13,952 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:14,231 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:14,231 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:14,231 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pcmodelformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:14,233 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pdbformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:14,243 Using built-in specs. 2021-07-15T22:17:14,244 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:14,244 Target: arm-linux-gnueabihf 2021-07-15T22:17:14,245 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:14,245 Thread model: posix 2021-07-15T22:17:14,245 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:14,245 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:14,245 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:14,245 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pdbformat.cpp -quiet -dumpbase pdbformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccqbrMeE.s 2021-07-15T22:17:14,258 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:14,258 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:14,259 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:14,259 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:14,259 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:14,259 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:14,259 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:14,260 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:14,260 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:14,260 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:14,260 #include "..." search starts here: 2021-07-15T22:17:14,260 #include <...> search starts here: 2021-07-15T22:17:14,261 /usr/include/eigen3 2021-07-15T22:17:14,261 include 2021-07-15T22:17:14,261 /usr/include/python3.9 2021-07-15T22:17:14,261 /usr/include/c++/10 2021-07-15T22:17:14,261 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:14,261 /usr/include/c++/10/backward 2021-07-15T22:17:14,261 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:14,262 /usr/local/include 2021-07-15T22:17:14,262 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:14,262 /usr/include 2021-07-15T22:17:14,262 End of search list. 2021-07-15T22:17:14,262 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:14,262 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:14,263 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:14,278 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:15,645 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:15,645 from include/openbabel/mol.h:43, 2021-07-15T22:17:15,646 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:15,646 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:15,646 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:15,646 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:15,646 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:15,646 | ^ 2021-07-15T22:17:15,646 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:15,647 37 | # define UNUSED(x) x 2021-07-15T22:17:15,647 | ^ 2021-07-15T22:17:16,340 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:16,341 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:16,341 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:16,341 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:16,341 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:16,341 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:16,342 | ^ 2021-07-15T22:17:16,342 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:16,342 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:16,342 | ^~~~~~~~ 2021-07-15T22:17:16,344 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:16,345 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:16,345 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:16,345 | ^ 2021-07-15T22:17:16,345 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:16,345 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:16,345 | ^~~~~~~~ 2021-07-15T22:17:16,361 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:16,361 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:16,361 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:16,361 | ^ 2021-07-15T22:17:16,362 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:16,362 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:16,362 | ^~~~~~~~ 2021-07-15T22:17:16,366 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:16,366 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:16,366 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:16,366 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:16,366 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:16,366 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:16,367 | ^ 2021-07-15T22:17:16,367 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:16,367 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:16,367 | ^~~~~~~~ 2021-07-15T22:17:20,402 ./src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:20,402 ./src/formats/pdbformat.cpp:623:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:17:20,402 623 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:17:20,403 | ^ 2021-07-15T22:17:20,403 In file included from /usr/include/stdio.h:867, 2021-07-15T22:17:20,403 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:17:20,403 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:17:20,403 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:17:20,403 from /usr/include/c++/10/string:55, 2021-07-15T22:17:20,404 from include/openbabel/mol.h:36, 2021-07-15T22:17:20,404 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:20,404 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:20,404 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:17:20,404 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:17:20,404 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:20,404 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:17:20,404 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:20,405 ./src/formats/pdbformat.cpp:641:70: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:17:20,405 641 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:17:20,405 | ^ 2021-07-15T22:17:20,405 In file included from /usr/include/stdio.h:867, 2021-07-15T22:17:20,405 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:17:20,405 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:17:20,406 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:17:20,406 from /usr/include/c++/10/string:55, 2021-07-15T22:17:20,406 from include/openbabel/mol.h:36, 2021-07-15T22:17:20,406 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:20,406 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:20,406 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:17:20,406 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:17:20,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:20,407 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:17:20,407 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:20,407 ./src/formats/pdbformat.cpp:678:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 2021-07-15T22:17:20,407 678 | snprintf(scharge, 3, "%+d", charge); 2021-07-15T22:17:20,407 | ^~~ 2021-07-15T22:17:20,407 ./src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767] 2021-07-15T22:17:20,407 678 | snprintf(scharge, 3, "%+d", charge); 2021-07-15T22:17:20,407 | ^~~~~ 2021-07-15T22:17:20,408 In file included from /usr/include/stdio.h:867, 2021-07-15T22:17:20,408 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:17:20,408 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:17:20,408 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:17:20,408 from /usr/include/c++/10/string:55, 2021-07-15T22:17:20,408 from include/openbabel/mol.h:36, 2021-07-15T22:17:20,408 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:20,409 from ./src/formats/pdbformat.cpp:17: 2021-07-15T22:17:20,409 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 2021-07-15T22:17:20,409 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:17:20,409 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:20,409 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:17:20,409 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:24,604 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:24,605 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o /tmp/ccqbrMeE.s 2021-07-15T22:17:24,611 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:25,483 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:25,483 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:25,483 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:25,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pdbqtformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:25,496 Using built-in specs. 2021-07-15T22:17:25,498 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:25,498 Target: arm-linux-gnueabihf 2021-07-15T22:17:25,498 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:25,499 Thread model: posix 2021-07-15T22:17:25,499 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:25,499 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:25,500 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:25,503 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pdbqtformat.cpp -quiet -dumpbase pdbqtformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccEemK0R.s 2021-07-15T22:17:25,515 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:25,516 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:25,516 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:25,516 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:25,516 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:25,517 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:25,517 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:25,517 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:25,517 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:25,517 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:25,517 #include "..." search starts here: 2021-07-15T22:17:25,518 #include <...> search starts here: 2021-07-15T22:17:25,518 /usr/include/eigen3 2021-07-15T22:17:25,518 include 2021-07-15T22:17:25,518 /usr/include/python3.9 2021-07-15T22:17:25,518 /usr/include/c++/10 2021-07-15T22:17:25,518 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:25,519 /usr/include/c++/10/backward 2021-07-15T22:17:25,519 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:25,519 /usr/local/include 2021-07-15T22:17:25,519 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:25,519 /usr/include 2021-07-15T22:17:25,519 End of search list. 2021-07-15T22:17:25,519 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:25,520 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:25,520 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:25,535 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:26,908 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:26,909 from include/openbabel/mol.h:43, 2021-07-15T22:17:26,909 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:26,909 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:26,909 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:26,909 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:26,909 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:26,910 | ^ 2021-07-15T22:17:26,910 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:26,910 37 | # define UNUSED(x) x 2021-07-15T22:17:26,910 | ^ 2021-07-15T22:17:27,607 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:27,607 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:27,607 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:27,608 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:27,608 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:27,608 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:27,608 | ^ 2021-07-15T22:17:27,608 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:27,608 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:27,608 | ^~~~~~~~ 2021-07-15T22:17:27,611 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:27,611 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:27,611 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:27,611 | ^ 2021-07-15T22:17:27,612 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:27,612 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:27,612 | ^~~~~~~~ 2021-07-15T22:17:27,631 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:27,632 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:27,632 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:27,632 | ^ 2021-07-15T22:17:27,632 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:27,632 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:27,632 | ^~~~~~~~ 2021-07-15T22:17:27,633 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:27,633 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:27,634 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:27,634 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:27,634 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:27,634 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:27,634 | ^ 2021-07-15T22:17:27,641 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:27,642 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:27,642 | ^~~~~~~~ 2021-07-15T22:17:28,096 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::OutputTree(OpenBabel::OBConversion*, OpenBabel::OBMol&, std::ostream&, std::map&, unsigned int, bool, bool)’: 2021-07-15T22:17:28,096 ./src/formats/pdbqtformat.cpp:580:20: warning: unused variable ‘child’ [-Wunused-variable] 2021-07-15T22:17:28,096 580 | unsigned int child=i; 2021-07-15T22:17:28,096 | ^~~~~ 2021-07-15T22:17:28,145 ./src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::ConstructTree(std::map&, std::vector >, unsigned int, const OpenBabel::OBMol&, bool)’: 2021-07-15T22:17:28,146 ./src/formats/pdbqtformat.cpp:609:145: warning: unused parameter ‘flexible’ [-Wunused-parameter] 2021-07-15T22:17:28,146 609 | void ConstructTree (map & tree, vector > rigid_fragments, unsigned int root_piece, const OBMol& mol, bool flexible) 2021-07-15T22:17:28,146 | ~~~~~^~~~~~~~ 2021-07-15T22:17:28,162 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::Separate_preserve_charges(OpenBabel::OBMol&, std::vector&)’: 2021-07-15T22:17:28,162 ./src/formats/pdbqtformat.cpp:794:9: warning: unused variable ‘fragments’ [-Wunused-variable] 2021-07-15T22:17:28,162 794 | int fragments = 0; 2021-07-15T22:17:28,162 | ^~~~~~~~~ 2021-07-15T22:17:28,223 ./src/formats/pdbqtformat.cpp: In function ‘bool OpenBabel::parseAtomRecord(char*, OpenBabel::OBMol&, int)’: 2021-07-15T22:17:28,223 ./src/formats/pdbqtformat.cpp:1045:60: warning: unused parameter ‘chainNum’ [-Wunused-parameter] 2021-07-15T22:17:28,223 1045 | static bool parseAtomRecord(char *buffer, OBMol &mol,int chainNum) 2021-07-15T22:17:28,223 | ~~~~^~~~~~~~ 2021-07-15T22:17:29,714 ./src/formats/pdbqtformat.cpp: At global scope: 2021-07-15T22:17:29,715 ./src/formats/pdbqtformat.cpp:747:16: warning: ‘unsigned int OpenBabel::AtomsSoFar(const std::map&, unsigned int)’ defined but not used [-Wunused-function] 2021-07-15T22:17:29,715 747 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) 2021-07-15T22:17:29,715 | ^~~~~~~~~~ 2021-07-15T22:17:31,618 ./src/formats/pdbqtformat.cpp: In function ‘void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)’: 2021-07-15T22:17:31,619 ./src/formats/pdbqtformat.cpp:334:52: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:17:31,619 334 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:17:31,619 | ^ 2021-07-15T22:17:31,620 In file included from /usr/include/stdio.h:867, 2021-07-15T22:17:31,620 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:17:31,620 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:17:31,620 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:17:31,620 from /usr/include/c++/10/string:55, 2021-07-15T22:17:31,620 from include/openbabel/mol.h:36, 2021-07-15T22:17:31,620 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:31,621 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:31,621 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:17:31,621 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:17:31,621 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:31,621 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:17:31,621 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:31,622 ./src/formats/pdbqtformat.cpp:351:60: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:17:31,622 351 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:17:31,622 | ^ 2021-07-15T22:17:31,622 In file included from /usr/include/stdio.h:867, 2021-07-15T22:17:31,622 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:17:31,623 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:17:31,623 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:17:31,623 from /usr/include/c++/10/string:55, 2021-07-15T22:17:31,623 from include/openbabel/mol.h:36, 2021-07-15T22:17:31,623 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:31,623 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:31,623 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:17:31,623 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:17:31,624 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:31,624 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:17:31,624 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:33,814 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:17:33,814 from include/openbabel/mol.h:35, 2021-07-15T22:17:33,814 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:33,814 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:33,814 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator]’: 2021-07-15T22:17:33,814 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:17:33,815 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:17:33,815 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:38,663 In file included from /usr/include/string.h:495, 2021-07-15T22:17:38,663 from /usr/include/c++/10/cstring:42, 2021-07-15T22:17:38,663 from include/openbabel/data.h:26, 2021-07-15T22:17:38,663 from include/openbabel/mol.h:46, 2021-07-15T22:17:38,663 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:38,664 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:38,664 In function ‘char* strncpy(char*, const char*, size_t)’, 2021-07-15T22:17:38,664 inlined from ‘virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at ./src/formats/pdbqtformat.cpp:915:22: 2021-07-15T22:17:38,664 /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 10 equals destination size [-Wstringop-truncation] 2021-07-15T22:17:38,664 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); 2021-07-15T22:17:38,664 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:38,774 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:17:38,774 from include/openbabel/mol.h:35, 2021-07-15T22:17:38,775 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:38,775 from ./src/formats/pdbqtformat.cpp:24: 2021-07-15T22:17:38,775 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:38,775 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:38,775 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:38,775 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:38,775 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:38,776 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:38,776 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:40,992 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:40,992 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o /tmp/ccEemK0R.s 2021-07-15T22:17:40,999 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:42,212 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:42,213 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:42,213 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pdbqtformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:42,218 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pointcloudformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:42,228 Using built-in specs. 2021-07-15T22:17:42,230 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:42,230 Target: arm-linux-gnueabihf 2021-07-15T22:17:42,230 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:42,230 Thread model: posix 2021-07-15T22:17:42,231 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:42,231 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:42,231 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:42,231 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pointcloudformat.cpp -quiet -dumpbase pointcloudformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccOzEDJ6.s 2021-07-15T22:17:42,247 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:42,247 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:42,247 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:42,249 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:42,249 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:42,250 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:42,250 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:42,250 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:42,250 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:42,250 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:42,250 #include "..." search starts here: 2021-07-15T22:17:42,251 #include <...> search starts here: 2021-07-15T22:17:42,251 /usr/include/eigen3 2021-07-15T22:17:42,251 include 2021-07-15T22:17:42,251 /usr/include/python3.9 2021-07-15T22:17:42,251 /usr/include/c++/10 2021-07-15T22:17:42,251 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:42,252 /usr/include/c++/10/backward 2021-07-15T22:17:42,252 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:42,252 /usr/local/include 2021-07-15T22:17:42,252 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:42,253 /usr/include 2021-07-15T22:17:42,253 End of search list. 2021-07-15T22:17:42,253 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:42,253 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:42,253 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:42,270 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:43,645 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:43,645 from include/openbabel/mol.h:43, 2021-07-15T22:17:43,645 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:43,645 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:43,646 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:43,646 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:43,646 | ^ 2021-07-15T22:17:43,646 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:43,646 37 | # define UNUSED(x) x 2021-07-15T22:17:43,646 | ^ 2021-07-15T22:17:44,340 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:44,341 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:44,341 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:44,341 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:44,341 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:44,341 | ^ 2021-07-15T22:17:44,341 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:44,342 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:44,342 | ^~~~~~~~ 2021-07-15T22:17:44,344 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:44,344 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:44,344 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:44,345 | ^ 2021-07-15T22:17:44,345 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:44,345 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:44,345 | ^~~~~~~~ 2021-07-15T22:17:44,361 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:44,361 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:44,361 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:44,361 | ^ 2021-07-15T22:17:44,361 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:44,361 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:44,362 | ^~~~~~~~ 2021-07-15T22:17:44,366 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:44,366 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:44,366 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:44,366 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:44,366 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:44,366 | ^ 2021-07-15T22:17:44,366 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:44,367 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:44,367 | ^~~~~~~~ 2021-07-15T22:17:44,652 ./src/formats/pointcloudformat.cpp: In member function ‘virtual int OpenBabel::PointCloudFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:17:44,652 ./src/formats/pointcloudformat.cpp:104:36: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:17:44,652 104 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:17:44,653 | ~~~~^ 2021-07-15T22:17:44,653 ./src/formats/pointcloudformat.cpp:104:64: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:17:44,653 104 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:17:44,653 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:17:44,672 ./src/formats/pointcloudformat.cpp: In member function ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:44,672 ./src/formats/pointcloudformat.cpp:217:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:17:44,673 217 | for( int j = 0; j < radius_mult_list.size(); j++ ) { 2021-07-15T22:17:44,673 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:46,690 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:17:46,691 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,691 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,691 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:17:46,691 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:17:46,691 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:17:46,691 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:46,744 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:17:46,744 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,744 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,744 /usr/include/c++/10/bits/stl_vector.h: In function ‘bool OpenBabel::conditional_add(std::vector&, OpenBabel::vector3, double)’: 2021-07-15T22:17:46,744 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,744 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:46,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:46,771 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:17:46,771 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,771 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,772 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:17:46,772 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:17:46,772 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:17:46,772 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:46,810 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:17:46,811 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:17:46,916 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:17:46,916 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,916 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,917 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:46,917 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,917 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:46,917 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:46,917 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,917 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:46,917 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:46,918 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:17:46,918 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,918 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,918 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,918 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:17:46,918 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:46,918 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,918 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:17:46,919 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:17:46,919 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:17:46,919 from include/openbabel/mol.h:35, 2021-07-15T22:17:46,919 from ./src/formats/pointcloudformat.cpp:28: 2021-07-15T22:17:46,919 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:17:46,919 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:17:46,919 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:17:47,269 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:47,270 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o /tmp/ccOzEDJ6.s 2021-07-15T22:17:47,275 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:47,514 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:47,514 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:47,514 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pointcloudformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:47,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/posformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/posformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:47,527 Using built-in specs. 2021-07-15T22:17:47,528 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:47,529 Target: arm-linux-gnueabihf 2021-07-15T22:17:47,529 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:47,529 Thread model: posix 2021-07-15T22:17:47,529 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:47,529 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:47,530 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:47,533 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/posformat.cpp -quiet -dumpbase posformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/posformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccsPCoes.s 2021-07-15T22:17:47,546 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:47,546 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:47,546 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:47,547 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:47,547 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:47,547 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:47,548 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:47,548 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:47,548 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:47,548 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:47,548 #include "..." search starts here: 2021-07-15T22:17:47,548 #include <...> search starts here: 2021-07-15T22:17:47,549 /usr/include/eigen3 2021-07-15T22:17:47,549 include 2021-07-15T22:17:47,549 /usr/include/python3.9 2021-07-15T22:17:47,549 /usr/include/c++/10 2021-07-15T22:17:47,549 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:47,549 /usr/include/c++/10/backward 2021-07-15T22:17:47,549 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:47,550 /usr/local/include 2021-07-15T22:17:47,550 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:47,550 /usr/include 2021-07-15T22:17:47,550 End of search list. 2021-07-15T22:17:47,550 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:47,550 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:47,551 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:47,564 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:48,940 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:48,940 from include/openbabel/mol.h:43, 2021-07-15T22:17:48,940 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:48,941 from ./src/formats/posformat.cpp:15: 2021-07-15T22:17:48,941 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:48,941 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:48,941 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:48,941 | ^ 2021-07-15T22:17:48,941 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:48,942 37 | # define UNUSED(x) x 2021-07-15T22:17:48,942 | ^ 2021-07-15T22:17:49,637 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:49,637 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:49,637 from ./src/formats/posformat.cpp:15: 2021-07-15T22:17:49,637 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:49,637 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:49,637 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:49,637 | ^ 2021-07-15T22:17:49,638 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:49,638 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:49,638 | ^~~~~~~~ 2021-07-15T22:17:49,640 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:49,640 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:49,641 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:49,641 | ^ 2021-07-15T22:17:49,641 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:49,641 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:49,641 | ^~~~~~~~ 2021-07-15T22:17:49,657 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:49,657 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:49,657 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:49,657 | ^ 2021-07-15T22:17:49,657 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:49,658 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:49,658 | ^~~~~~~~ 2021-07-15T22:17:49,662 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:49,662 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:49,662 from ./src/formats/posformat.cpp:15: 2021-07-15T22:17:49,662 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:49,662 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:49,662 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:49,663 | ^ 2021-07-15T22:17:49,663 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:49,663 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:49,663 | ^~~~~~~~ 2021-07-15T22:17:49,950 ./src/formats/posformat.cpp: In member function ‘virtual bool OpenBabel::POSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:49,950 ./src/formats/posformat.cpp:101:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:17:49,951 101 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:17:49,951 | ~^ ~~~~~~~ 2021-07-15T22:17:49,951 | | | 2021-07-15T22:17:49,951 | | unsigned int* 2021-07-15T22:17:49,951 | int* 2021-07-15T22:17:49,951 | %d 2021-07-15T22:17:52,852 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:52,853 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/posformat.o /tmp/ccsPCoes.s 2021-07-15T22:17:52,857 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:17:53,147 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:17:53,147 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:17:53,147 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/posformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:53,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/povrayformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:17:53,159 Using built-in specs. 2021-07-15T22:17:53,160 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:17:53,161 Target: arm-linux-gnueabihf 2021-07-15T22:17:53,161 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:17:53,161 Thread model: posix 2021-07-15T22:17:53,161 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:17:53,162 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:17:53,163 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:17:53,165 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/povrayformat.cpp -quiet -dumpbase povrayformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccABOFrL.s 2021-07-15T22:17:53,177 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:53,177 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:53,177 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:53,177 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:17:53,177 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:17:53,178 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:17:53,178 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:17:53,178 ignoring duplicate directory "/usr/include/" 2021-07-15T22:17:53,178 as it is a non-system directory that duplicates a system directory 2021-07-15T22:17:53,178 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:17:53,178 #include "..." search starts here: 2021-07-15T22:17:53,179 #include <...> search starts here: 2021-07-15T22:17:53,179 /usr/include/eigen3 2021-07-15T22:17:53,179 include 2021-07-15T22:17:53,179 /usr/include/python3.9 2021-07-15T22:17:53,179 /usr/include/c++/10 2021-07-15T22:17:53,179 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:17:53,179 /usr/include/c++/10/backward 2021-07-15T22:17:53,179 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:17:53,180 /usr/local/include 2021-07-15T22:17:53,180 /usr/include/arm-linux-gnueabihf 2021-07-15T22:17:53,180 /usr/include 2021-07-15T22:17:53,180 End of search list. 2021-07-15T22:17:53,180 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:17:53,180 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:17:53,181 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:17:53,194 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:17:54,585 In file included from include/openbabel/atom.h:33, 2021-07-15T22:17:54,586 from include/openbabel/mol.h:43, 2021-07-15T22:17:54,586 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:54,586 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:17:54,586 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:17:54,586 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:17:54,586 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:17:54,587 | ^ 2021-07-15T22:17:54,587 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:17:54,587 37 | # define UNUSED(x) x 2021-07-15T22:17:54,587 | ^ 2021-07-15T22:17:55,282 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:55,282 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:55,283 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:17:55,283 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:55,283 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:55,283 862 | {return new OBVibrationData(*this);} 2021-07-15T22:17:55,283 | ^ 2021-07-15T22:17:55,283 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:17:55,284 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:17:55,284 | ^~~~~~~~ 2021-07-15T22:17:55,286 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:55,286 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:55,286 907 | {return new OBDOSData(*this);} 2021-07-15T22:17:55,286 | ^ 2021-07-15T22:17:55,287 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:17:55,287 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:17:55,287 | ^~~~~~~~ 2021-07-15T22:17:55,302 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:55,303 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:55,303 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:17:55,303 | ^ 2021-07-15T22:17:55,303 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:17:55,303 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:17:55,303 | ^~~~~~~~ 2021-07-15T22:17:55,307 In file included from include/openbabel/mol.h:52, 2021-07-15T22:17:55,307 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:17:55,308 from ./src/formats/povrayformat.cpp:23: 2021-07-15T22:17:55,308 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:17:55,308 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:17:55,308 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:17:55,308 | ^ 2021-07-15T22:17:55,308 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:17:55,308 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:17:55,309 | ^~~~~~~~ 2021-07-15T22:17:55,676 ./src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: 2021-07-15T22:17:55,676 ./src/formats/povrayformat.cpp:168:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:17:55,676 168 | size_t time_res; /* Result of strftime */ 2021-07-15T22:17:55,676 | ^~~~~~~~ 2021-07-15T22:17:55,676 ./src/formats/povrayformat.cpp:164:68: warning: unused parameter ‘prefix’ [-Wunused-parameter] 2021-07-15T22:17:55,676 164 | void PovrayFormat::OutputHeader(ostream &ofs, OBMol &mol, string prefix) 2021-07-15T22:17:55,677 | ~~~~~~~^~~~~~ 2021-07-15T22:17:55,771 ./src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:17:55,771 ./src/formats/povrayformat.cpp:802:17: warning: unused variable ‘title’ [-Wunused-variable] 2021-07-15T22:17:55,771 802 | const char* title = pmol->GetTitle(); 2021-07-15T22:17:55,771 | ^~~~~ 2021-07-15T22:18:01,358 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:01,358 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o /tmp/ccABOFrL.s 2021-07-15T22:18:01,363 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:01,939 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:01,939 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:01,940 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/povrayformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:01,943 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pqrformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:01,954 Using built-in specs. 2021-07-15T22:18:01,955 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:01,955 Target: arm-linux-gnueabihf 2021-07-15T22:18:01,955 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:01,955 Thread model: posix 2021-07-15T22:18:01,956 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:01,956 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:01,956 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:01,956 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pqrformat.cpp -quiet -dumpbase pqrformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNVipxj.s 2021-07-15T22:18:01,967 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:01,968 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:01,968 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:01,968 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:01,968 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:01,969 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:01,969 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:01,969 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:01,969 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:01,969 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:01,969 #include "..." search starts here: 2021-07-15T22:18:01,970 #include <...> search starts here: 2021-07-15T22:18:01,970 /usr/include/eigen3 2021-07-15T22:18:01,970 include 2021-07-15T22:18:01,970 /usr/include/python3.9 2021-07-15T22:18:01,970 /usr/include/c++/10 2021-07-15T22:18:01,970 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:01,971 /usr/include/c++/10/backward 2021-07-15T22:18:01,971 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:01,971 /usr/local/include 2021-07-15T22:18:01,971 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:01,971 /usr/include 2021-07-15T22:18:01,971 End of search list. 2021-07-15T22:18:01,972 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:01,972 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:01,972 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:01,986 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:03,366 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:03,366 from include/openbabel/mol.h:43, 2021-07-15T22:18:03,367 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:03,367 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:03,367 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:03,367 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:03,367 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:03,367 | ^ 2021-07-15T22:18:03,367 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:03,368 37 | # define UNUSED(x) x 2021-07-15T22:18:03,368 | ^ 2021-07-15T22:18:04,062 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:04,063 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:04,063 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:04,063 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:04,063 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:04,063 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:04,063 | ^ 2021-07-15T22:18:04,064 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:04,064 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:04,064 | ^~~~~~~~ 2021-07-15T22:18:04,066 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:04,066 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:04,066 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:04,067 | ^ 2021-07-15T22:18:04,067 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:04,067 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:04,067 | ^~~~~~~~ 2021-07-15T22:18:04,083 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:04,083 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:04,083 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:04,083 | ^ 2021-07-15T22:18:04,083 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:04,084 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:04,084 | ^~~~~~~~ 2021-07-15T22:18:04,087 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:04,088 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:04,088 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:04,088 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:04,088 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:04,088 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:04,088 | ^ 2021-07-15T22:18:04,089 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:04,089 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:04,089 | ^~~~~~~~ 2021-07-15T22:18:04,392 ./src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomCharge(char*, OpenBabel::OBMol&)’: 2021-07-15T22:18:04,393 ./src/formats/pqrformat.cpp:196:13: warning: unused variable ‘atom’ [-Wunused-variable] 2021-07-15T22:18:04,393 196 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); 2021-07-15T22:18:04,393 | ^~~~ 2021-07-15T22:18:04,393 ./src/formats/pqrformat.cpp: In function ‘double OpenBabel::parseAtomRadius(char*, OpenBabel::OBMol&)’: 2021-07-15T22:18:04,393 ./src/formats/pqrformat.cpp:211:13: warning: unused variable ‘atom’ [-Wunused-variable] 2021-07-15T22:18:04,393 211 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); 2021-07-15T22:18:04,394 | ^~~~ 2021-07-15T22:18:06,404 ./src/formats/pqrformat.cpp: In member function ‘virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:18:06,404 ./src/formats/pqrformat.cpp:501:58: warning: ‘__builtin___snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2021-07-15T22:18:06,404 501 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); 2021-07-15T22:18:06,404 | ^ 2021-07-15T22:18:06,405 In file included from /usr/include/stdio.h:867, 2021-07-15T22:18:06,405 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:18:06,405 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:18:06,405 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:18:06,405 from /usr/include/c++/10/string:55, 2021-07-15T22:18:06,405 from include/openbabel/mol.h:36, 2021-07-15T22:18:06,405 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:06,406 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:06,406 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 2021-07-15T22:18:06,406 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:18:06,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:06,406 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:18:06,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:06,406 ./src/formats/pqrformat.cpp:518:66: warning: ‘%-3s’ directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 2021-07-15T22:18:06,407 518 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); 2021-07-15T22:18:06,407 | ^~~~ ~~~ 2021-07-15T22:18:06,407 In file included from /usr/include/stdio.h:867, 2021-07-15T22:18:06,407 from /usr/include/c++/10/cstdio:42, 2021-07-15T22:18:06,407 from /usr/include/c++/10/ext/string_conversions.h:43, 2021-07-15T22:18:06,407 from /usr/include/c++/10/bits/basic_string.h:6545, 2021-07-15T22:18:06,407 from /usr/include/c++/10/string:55, 2021-07-15T22:18:06,407 from include/openbabel/mol.h:36, 2021-07-15T22:18:06,408 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:06,408 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:06,408 /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 17 bytes into a destination of size 10 2021-07-15T22:18:06,408 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, 2021-07-15T22:18:06,408 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:06,408 68 | __bos (__s), __fmt, __va_arg_pack ()); 2021-07-15T22:18:06,408 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:07,124 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:18:07,124 from include/openbabel/mol.h:35, 2021-07-15T22:18:07,124 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:07,124 from ./src/formats/pqrformat.cpp:16: 2021-07-15T22:18:07,124 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:18:07,124 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:18:07,125 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:18:07,125 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:08,920 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::PQRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:18:08,920 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:08,921 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:08,921 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:08,921 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:08,921 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:08,922 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:09,722 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:09,723 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o /tmp/ccNVipxj.s 2021-07-15T22:18:09,727 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:10,290 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:10,290 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:10,291 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pqrformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:10,294 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/pwscfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:10,303 Using built-in specs. 2021-07-15T22:18:10,304 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:10,305 Target: arm-linux-gnueabihf 2021-07-15T22:18:10,305 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:10,305 Thread model: posix 2021-07-15T22:18:10,305 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:10,305 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:10,306 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:10,306 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/pwscfformat.cpp -quiet -dumpbase pwscfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4xR86F.s 2021-07-15T22:18:10,318 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:10,319 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:10,319 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:10,319 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:10,319 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:10,320 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:10,320 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:10,320 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:10,320 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:10,321 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:10,321 #include "..." search starts here: 2021-07-15T22:18:10,321 #include <...> search starts here: 2021-07-15T22:18:10,322 /usr/include/eigen3 2021-07-15T22:18:10,322 include 2021-07-15T22:18:10,322 /usr/include/python3.9 2021-07-15T22:18:10,322 /usr/include/c++/10 2021-07-15T22:18:10,322 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:10,322 /usr/include/c++/10/backward 2021-07-15T22:18:10,323 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:10,323 /usr/local/include 2021-07-15T22:18:10,323 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:10,323 /usr/include 2021-07-15T22:18:10,323 End of search list. 2021-07-15T22:18:10,324 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:10,324 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:10,324 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:10,338 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:11,698 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:11,699 from include/openbabel/mol.h:43, 2021-07-15T22:18:11,699 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:11,699 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:18:11,699 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:11,699 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:11,699 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:11,700 | ^ 2021-07-15T22:18:11,700 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:11,700 37 | # define UNUSED(x) x 2021-07-15T22:18:11,700 | ^ 2021-07-15T22:18:12,394 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:12,394 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:12,394 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:18:12,394 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:12,395 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:12,395 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:12,395 | ^ 2021-07-15T22:18:12,395 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:12,395 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:12,395 | ^~~~~~~~ 2021-07-15T22:18:12,398 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:12,398 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:12,398 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:12,398 | ^ 2021-07-15T22:18:12,398 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:12,398 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:12,399 | ^~~~~~~~ 2021-07-15T22:18:12,414 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:12,414 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:12,415 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:12,415 | ^ 2021-07-15T22:18:12,415 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:12,415 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:12,415 | ^~~~~~~~ 2021-07-15T22:18:12,419 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:12,419 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:12,419 from ./src/formats/pwscfformat.cpp:16: 2021-07-15T22:18:12,419 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:12,420 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:12,420 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:12,420 | ^ 2021-07-15T22:18:12,420 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:12,420 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:12,420 | ^~~~~~~~ 2021-07-15T22:18:12,711 ./src/formats/pwscfformat.cpp: In member function ‘virtual int OpenBabel::PWscfFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:18:12,712 ./src/formats/pwscfformat.cpp:51:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:18:12,712 51 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:18:12,712 | ~~~~^ 2021-07-15T22:18:12,712 ./src/formats/pwscfformat.cpp:51:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:18:12,712 51 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:18:12,712 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:18:15,810 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:15,811 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o /tmp/cc4xR86F.s 2021-07-15T22:18:15,819 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:16,113 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:16,114 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:16,114 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/pwscfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:16,120 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/qchemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:16,127 Using built-in specs. 2021-07-15T22:18:16,129 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:16,129 Target: arm-linux-gnueabihf 2021-07-15T22:18:16,129 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:16,130 Thread model: posix 2021-07-15T22:18:16,130 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:16,130 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:16,131 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:16,134 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/qchemformat.cpp -quiet -dumpbase qchemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccKlF5lU.s 2021-07-15T22:18:16,147 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:16,148 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:16,148 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:16,149 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:16,149 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:16,150 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:16,150 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:16,150 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:16,150 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:16,151 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:16,151 #include "..." search starts here: 2021-07-15T22:18:16,151 #include <...> search starts here: 2021-07-15T22:18:16,151 /usr/include/eigen3 2021-07-15T22:18:16,152 include 2021-07-15T22:18:16,152 /usr/include/python3.9 2021-07-15T22:18:16,152 /usr/include/c++/10 2021-07-15T22:18:16,152 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:16,152 /usr/include/c++/10/backward 2021-07-15T22:18:16,153 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:16,153 /usr/local/include 2021-07-15T22:18:16,153 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:16,153 /usr/include 2021-07-15T22:18:16,153 End of search list. 2021-07-15T22:18:16,155 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:16,155 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:16,155 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:16,171 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:17,539 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:17,539 from include/openbabel/mol.h:43, 2021-07-15T22:18:17,539 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:17,540 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:18:17,540 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:17,540 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:17,540 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:17,540 | ^ 2021-07-15T22:18:17,540 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:17,540 37 | # define UNUSED(x) x 2021-07-15T22:18:17,540 | ^ 2021-07-15T22:18:18,238 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:18,238 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:18,238 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:18:18,238 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:18,239 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:18,239 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:18,239 | ^ 2021-07-15T22:18:18,239 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:18,239 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:18,239 | ^~~~~~~~ 2021-07-15T22:18:18,243 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:18,243 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:18,243 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:18,244 | ^ 2021-07-15T22:18:18,244 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:18,244 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:18,244 | ^~~~~~~~ 2021-07-15T22:18:18,261 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:18,261 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:18,261 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:18,261 | ^ 2021-07-15T22:18:18,262 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:18,262 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:18,262 | ^~~~~~~~ 2021-07-15T22:18:18,266 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:18,267 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:18,267 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:18:18,267 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:18,267 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:18,267 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:18,267 | ^ 2021-07-15T22:18:18,267 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:18,268 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:18,268 | ^~~~~~~~ 2021-07-15T22:18:21,388 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:18:21,388 from include/openbabel/mol.h:35, 2021-07-15T22:18:21,389 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:21,389 from ./src/formats/qchemformat.cpp:17: 2021-07-15T22:18:21,389 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:18:21,389 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:18:21,389 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:18:21,389 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:21,438 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:18:21,438 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:18:22,225 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:18:22,226 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:22,226 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:22,226 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:22,227 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:22,228 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:22,228 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:22,230 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:22,230 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:22,230 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:22,231 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:22,231 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:22,231 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:22,232 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:18:22,232 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:18:22,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:23,531 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:23,532 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o /tmp/ccKlF5lU.s 2021-07-15T22:18:23,541 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:24,024 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:24,024 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:24,025 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/qchemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:24,028 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/reportformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/reportformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:24,038 Using built-in specs. 2021-07-15T22:18:24,040 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:24,040 Target: arm-linux-gnueabihf 2021-07-15T22:18:24,040 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:24,040 Thread model: posix 2021-07-15T22:18:24,040 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:24,041 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:24,041 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:24,041 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/reportformat.cpp -quiet -dumpbase reportformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/reportformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc8mFzM6.s 2021-07-15T22:18:24,054 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:24,054 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:24,055 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:24,055 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:24,055 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:24,055 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:24,056 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:24,056 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:24,056 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:24,056 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:24,056 #include "..." search starts here: 2021-07-15T22:18:24,057 #include <...> search starts here: 2021-07-15T22:18:24,057 /usr/include/eigen3 2021-07-15T22:18:24,057 include 2021-07-15T22:18:24,057 /usr/include/python3.9 2021-07-15T22:18:24,057 /usr/include/c++/10 2021-07-15T22:18:24,057 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:24,058 /usr/include/c++/10/backward 2021-07-15T22:18:24,058 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:24,058 /usr/local/include 2021-07-15T22:18:24,058 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:24,058 /usr/include 2021-07-15T22:18:24,058 End of search list. 2021-07-15T22:18:24,059 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:24,059 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:24,059 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:24,075 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:25,431 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:25,432 from include/openbabel/mol.h:43, 2021-07-15T22:18:25,432 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:25,432 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:18:25,433 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:25,433 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:25,433 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:25,433 | ^ 2021-07-15T22:18:25,433 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:25,433 37 | # define UNUSED(x) x 2021-07-15T22:18:25,433 | ^ 2021-07-15T22:18:26,127 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:26,128 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:26,128 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:18:26,128 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:26,128 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:26,128 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:26,128 | ^ 2021-07-15T22:18:26,128 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:26,129 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:26,129 | ^~~~~~~~ 2021-07-15T22:18:26,131 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:26,131 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:26,131 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:26,132 | ^ 2021-07-15T22:18:26,132 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:26,132 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:26,132 | ^~~~~~~~ 2021-07-15T22:18:26,147 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:26,148 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:26,148 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:26,148 | ^ 2021-07-15T22:18:26,148 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:26,148 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:26,148 | ^~~~~~~~ 2021-07-15T22:18:26,152 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:26,153 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:26,153 from ./src/formats/reportformat.cpp:23: 2021-07-15T22:18:26,153 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:26,153 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:26,153 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:26,153 | ^ 2021-07-15T22:18:26,153 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:26,154 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:26,154 | ^~~~~~~~ 2021-07-15T22:18:28,985 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:28,986 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/reportformat.o /tmp/cc8mFzM6.s 2021-07-15T22:18:28,992 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:29,248 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:29,248 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:29,248 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/reportformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:29,250 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/rsmiformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:29,259 Using built-in specs. 2021-07-15T22:18:29,260 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:29,261 Target: arm-linux-gnueabihf 2021-07-15T22:18:29,261 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:29,261 Thread model: posix 2021-07-15T22:18:29,261 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:29,261 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:29,261 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:29,262 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/rsmiformat.cpp -quiet -dumpbase rsmiformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccSFLfGm.s 2021-07-15T22:18:29,273 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:29,273 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:29,274 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:29,274 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:29,274 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:29,274 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:29,274 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:29,274 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:29,274 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:29,275 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:29,275 #include "..." search starts here: 2021-07-15T22:18:29,275 #include <...> search starts here: 2021-07-15T22:18:29,275 /usr/include/eigen3 2021-07-15T22:18:29,276 include 2021-07-15T22:18:29,276 /usr/include/python3.9 2021-07-15T22:18:29,276 /usr/include/c++/10 2021-07-15T22:18:29,276 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:29,276 /usr/include/c++/10/backward 2021-07-15T22:18:29,276 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:29,277 /usr/local/include 2021-07-15T22:18:29,277 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:29,277 /usr/include 2021-07-15T22:18:29,277 End of search list. 2021-07-15T22:18:29,277 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:29,277 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:29,278 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:29,294 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:30,795 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:30,796 from include/openbabel/mol.h:43, 2021-07-15T22:18:30,796 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:18:30,796 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:30,796 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:30,796 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:30,797 | ^ 2021-07-15T22:18:30,797 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:30,797 37 | # define UNUSED(x) x 2021-07-15T22:18:30,797 | ^ 2021-07-15T22:18:31,496 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:31,496 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:18:31,496 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:31,496 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:31,496 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:31,497 | ^ 2021-07-15T22:18:31,497 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:31,497 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:31,497 | ^~~~~~~~ 2021-07-15T22:18:31,499 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:31,500 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:31,500 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:31,500 | ^ 2021-07-15T22:18:31,500 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:31,500 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:31,500 | ^~~~~~~~ 2021-07-15T22:18:31,516 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:31,516 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:31,516 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:31,517 | ^ 2021-07-15T22:18:31,517 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:31,517 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:31,517 | ^~~~~~~~ 2021-07-15T22:18:31,521 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:31,521 from ./src/formats/rsmiformat.cpp:19: 2021-07-15T22:18:31,521 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:31,521 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:31,521 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:31,522 | ^ 2021-07-15T22:18:31,522 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:31,522 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:31,522 | ^~~~~~~~ 2021-07-15T22:18:36,954 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:36,954 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o /tmp/ccSFLfGm.s 2021-07-15T22:18:36,960 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:37,511 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:37,512 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:37,512 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rsmiformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:37,515 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/rxnformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:37,524 Using built-in specs. 2021-07-15T22:18:37,526 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:37,526 Target: arm-linux-gnueabihf 2021-07-15T22:18:37,526 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:37,526 Thread model: posix 2021-07-15T22:18:37,527 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:37,527 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:37,528 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:37,530 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/rxnformat.cpp -quiet -dumpbase rxnformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccFTAItG.s 2021-07-15T22:18:37,543 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:37,543 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:37,543 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:37,544 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:37,544 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:37,544 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:37,544 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:37,544 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:37,545 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:37,545 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:37,545 #include "..." search starts here: 2021-07-15T22:18:37,545 #include <...> search starts here: 2021-07-15T22:18:37,545 /usr/include/eigen3 2021-07-15T22:18:37,545 include 2021-07-15T22:18:37,546 /usr/include/python3.9 2021-07-15T22:18:37,546 /usr/include/c++/10 2021-07-15T22:18:37,546 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:37,546 /usr/include/c++/10/backward 2021-07-15T22:18:37,546 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:37,546 /usr/local/include 2021-07-15T22:18:37,546 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:37,547 /usr/include 2021-07-15T22:18:37,547 End of search list. 2021-07-15T22:18:37,547 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:37,547 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:37,547 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:37,560 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:39,059 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:39,059 from include/openbabel/mol.h:43, 2021-07-15T22:18:39,059 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:18:39,059 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:39,059 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:39,059 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:39,059 | ^ 2021-07-15T22:18:39,060 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:39,060 37 | # define UNUSED(x) x 2021-07-15T22:18:39,060 | ^ 2021-07-15T22:18:39,759 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:39,759 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:18:39,759 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:39,759 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:39,759 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:39,760 | ^ 2021-07-15T22:18:39,760 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:39,760 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:39,760 | ^~~~~~~~ 2021-07-15T22:18:39,764 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:39,764 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:39,764 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:39,764 | ^ 2021-07-15T22:18:39,765 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:39,765 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:39,765 | ^~~~~~~~ 2021-07-15T22:18:39,782 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:39,782 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:39,782 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:39,782 | ^ 2021-07-15T22:18:39,782 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:39,783 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:39,783 | ^~~~~~~~ 2021-07-15T22:18:39,787 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:39,788 from ./src/formats/rxnformat.cpp:20: 2021-07-15T22:18:39,788 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:39,788 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:39,788 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:39,788 | ^ 2021-07-15T22:18:39,788 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:39,789 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:39,789 | ^~~~~~~~ 2021-07-15T22:18:40,211 ./src/formats/rxnformat.cpp: In member function ‘virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:18:40,211 ./src/formats/rxnformat.cpp:228:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:18:40,211 228 | for(i=0;iNumReactants();i++) 2021-07-15T22:18:40,212 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:40,213 ./src/formats/rxnformat.cpp:235:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:18:40,213 235 | for(i=0;iNumProducts();i++) 2021-07-15T22:18:40,213 | ~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:18:44,019 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:44,020 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o /tmp/ccFTAItG.s 2021-07-15T22:18:44,026 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:44,433 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:44,433 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:44,433 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/rxnformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:44,436 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/shelxformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:44,447 Using built-in specs. 2021-07-15T22:18:44,449 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:44,449 Target: arm-linux-gnueabihf 2021-07-15T22:18:44,449 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:44,450 Thread model: posix 2021-07-15T22:18:44,450 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:44,450 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:44,451 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:44,454 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/shelxformat.cpp -quiet -dumpbase shelxformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cczV8CcZ.s 2021-07-15T22:18:44,467 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:44,467 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:44,468 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:44,469 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:44,469 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:44,469 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:44,469 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:44,469 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:44,470 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:44,470 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:44,470 #include "..." search starts here: 2021-07-15T22:18:44,470 #include <...> search starts here: 2021-07-15T22:18:44,470 /usr/include/eigen3 2021-07-15T22:18:44,470 include 2021-07-15T22:18:44,471 /usr/include/python3.9 2021-07-15T22:18:44,471 /usr/include/c++/10 2021-07-15T22:18:44,471 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:44,471 /usr/include/c++/10/backward 2021-07-15T22:18:44,471 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:44,471 /usr/local/include 2021-07-15T22:18:44,471 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:44,472 /usr/include 2021-07-15T22:18:44,472 End of search list. 2021-07-15T22:18:44,472 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:44,472 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:44,472 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:44,486 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:45,919 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:45,919 from include/openbabel/mol.h:43, 2021-07-15T22:18:45,919 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:45,919 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:18:45,919 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:45,920 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:45,920 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:45,920 | ^ 2021-07-15T22:18:45,920 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:45,920 37 | # define UNUSED(x) x 2021-07-15T22:18:45,920 | ^ 2021-07-15T22:18:46,537 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:46,537 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:46,537 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:18:46,537 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:46,537 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:46,537 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:46,538 | ^ 2021-07-15T22:18:46,538 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:46,538 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:46,538 | ^~~~~~~~ 2021-07-15T22:18:46,540 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:46,541 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:46,541 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:46,541 | ^ 2021-07-15T22:18:46,541 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:46,541 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:46,541 | ^~~~~~~~ 2021-07-15T22:18:46,557 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:46,557 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:46,557 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:46,557 | ^ 2021-07-15T22:18:46,558 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:46,558 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:46,558 | ^~~~~~~~ 2021-07-15T22:18:46,562 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:46,562 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:46,562 from ./src/formats/shelxformat.cpp:18: 2021-07-15T22:18:46,562 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:46,562 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:46,562 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:46,563 | ^ 2021-07-15T22:18:46,563 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:46,563 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:46,563 | ^~~~~~~~ 2021-07-15T22:18:49,119 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:49,120 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o /tmp/cczV8CcZ.s 2021-07-15T22:18:49,125 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:49,341 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:49,341 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:49,341 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/shelxformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:49,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/siestaformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:49,353 Using built-in specs. 2021-07-15T22:18:49,354 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:49,354 Target: arm-linux-gnueabihf 2021-07-15T22:18:49,354 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:49,355 Thread model: posix 2021-07-15T22:18:49,355 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:49,355 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:49,355 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:49,356 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/siestaformat.cpp -quiet -dumpbase siestaformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNP26uc.s 2021-07-15T22:18:49,368 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:49,368 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:49,369 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:49,369 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:49,370 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:49,370 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:49,370 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:49,370 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:49,370 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:49,371 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:49,371 #include "..." search starts here: 2021-07-15T22:18:49,371 #include <...> search starts here: 2021-07-15T22:18:49,371 /usr/include/eigen3 2021-07-15T22:18:49,372 include 2021-07-15T22:18:49,372 /usr/include/python3.9 2021-07-15T22:18:49,372 /usr/include/c++/10 2021-07-15T22:18:49,372 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:49,372 /usr/include/c++/10/backward 2021-07-15T22:18:49,372 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:49,373 /usr/local/include 2021-07-15T22:18:49,373 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:49,373 /usr/include 2021-07-15T22:18:49,373 End of search list. 2021-07-15T22:18:49,373 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:49,374 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:49,374 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:49,390 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:50,762 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:50,763 from include/openbabel/mol.h:43, 2021-07-15T22:18:50,763 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:50,763 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:18:50,763 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:50,763 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:50,764 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:50,764 | ^ 2021-07-15T22:18:50,764 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:50,764 37 | # define UNUSED(x) x 2021-07-15T22:18:50,764 | ^ 2021-07-15T22:18:51,461 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:51,462 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:51,462 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:18:51,462 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:51,462 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:51,462 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:51,462 | ^ 2021-07-15T22:18:51,462 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:51,463 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:51,463 | ^~~~~~~~ 2021-07-15T22:18:51,465 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:51,465 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:51,465 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:51,465 | ^ 2021-07-15T22:18:51,466 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:51,466 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:51,466 | ^~~~~~~~ 2021-07-15T22:18:51,482 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:51,482 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:51,482 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:51,482 | ^ 2021-07-15T22:18:51,482 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:51,482 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:51,483 | ^~~~~~~~ 2021-07-15T22:18:51,486 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:51,487 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:51,487 from ./src/formats/siestaformat.cpp:16: 2021-07-15T22:18:51,487 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:51,487 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:51,487 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:51,487 | ^ 2021-07-15T22:18:51,487 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:51,488 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:51,488 | ^~~~~~~~ 2021-07-15T22:18:51,774 ./src/formats/siestaformat.cpp: In member function ‘virtual int OpenBabel::SIESTAFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:18:51,774 ./src/formats/siestaformat.cpp:49:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:18:51,774 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:18:51,774 | ~~~~^ 2021-07-15T22:18:51,775 ./src/formats/siestaformat.cpp:49:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:18:51,775 49 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:18:51,775 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:18:51,833 ./src/formats/siestaformat.cpp: In member function ‘virtual bool OpenBabel::SIESTAFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:18:51,833 ./src/formats/siestaformat.cpp:82:10: warning: variable ‘coordsAreAngstrom’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:18:51,833 82 | bool coordsAreAngstrom = false; 2021-07-15T22:18:51,833 | ^~~~~~~~~~~~~~~~~ 2021-07-15T22:18:51,834 ./src/formats/siestaformat.cpp:88:12: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:18:51,834 88 | size_t size; 2021-07-15T22:18:51,834 | ^~~~ 2021-07-15T22:18:51,834 ./src/formats/siestaformat.cpp:92:30: warning: unused variable ‘numSpecies’ [-Wunused-variable] 2021-07-15T22:18:51,834 92 | int atomicNum, numAtoms, numSpecies; 2021-07-15T22:18:51,834 | ^~~~~~~~~~ 2021-07-15T22:18:57,095 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:57,096 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o /tmp/ccNP26uc.s 2021-07-15T22:18:57,100 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:18:57,578 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:18:57,578 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:18:57,578 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/siestaformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:57,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/smileyformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:18:57,589 Using built-in specs. 2021-07-15T22:18:57,591 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:18:57,591 Target: arm-linux-gnueabihf 2021-07-15T22:18:57,591 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:18:57,592 Thread model: posix 2021-07-15T22:18:57,592 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:18:57,592 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:18:57,592 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:18:57,592 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/smileyformat.cpp -quiet -dumpbase smileyformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccL1KGHp.s 2021-07-15T22:18:57,607 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:57,607 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:57,607 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:57,608 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:18:57,608 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:18:57,608 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:18:57,608 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:18:57,608 ignoring duplicate directory "/usr/include/" 2021-07-15T22:18:57,609 as it is a non-system directory that duplicates a system directory 2021-07-15T22:18:57,609 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:18:57,609 #include "..." search starts here: 2021-07-15T22:18:57,609 #include <...> search starts here: 2021-07-15T22:18:57,609 /usr/include/eigen3 2021-07-15T22:18:57,610 include 2021-07-15T22:18:57,610 /usr/include/python3.9 2021-07-15T22:18:57,610 /usr/include/c++/10 2021-07-15T22:18:57,610 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:18:57,610 /usr/include/c++/10/backward 2021-07-15T22:18:57,610 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:18:57,610 /usr/local/include 2021-07-15T22:18:57,611 /usr/include/arm-linux-gnueabihf 2021-07-15T22:18:57,611 /usr/include 2021-07-15T22:18:57,611 End of search list. 2021-07-15T22:18:57,611 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:18:57,611 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:18:57,612 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:18:57,625 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:18:59,011 In file included from include/openbabel/atom.h:33, 2021-07-15T22:18:59,011 from include/openbabel/mol.h:43, 2021-07-15T22:18:59,011 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:59,012 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:18:59,012 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:18:59,012 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:18:59,012 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:18:59,012 | ^ 2021-07-15T22:18:59,012 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:18:59,012 37 | # define UNUSED(x) x 2021-07-15T22:18:59,013 | ^ 2021-07-15T22:18:59,710 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:59,710 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:59,710 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:18:59,710 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:59,710 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:59,710 862 | {return new OBVibrationData(*this);} 2021-07-15T22:18:59,711 | ^ 2021-07-15T22:18:59,711 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:18:59,711 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:18:59,711 | ^~~~~~~~ 2021-07-15T22:18:59,713 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:59,714 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:59,714 907 | {return new OBDOSData(*this);} 2021-07-15T22:18:59,714 | ^ 2021-07-15T22:18:59,714 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:18:59,714 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:18:59,714 | ^~~~~~~~ 2021-07-15T22:18:59,730 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:59,730 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:59,730 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:18:59,730 | ^ 2021-07-15T22:18:59,731 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:18:59,731 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:18:59,731 | ^~~~~~~~ 2021-07-15T22:18:59,735 In file included from include/openbabel/mol.h:52, 2021-07-15T22:18:59,735 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:18:59,735 from ./src/formats/smileyformat.cpp:15: 2021-07-15T22:18:59,735 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:18:59,735 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:18:59,735 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:18:59,736 | ^ 2021-07-15T22:18:59,736 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:18:59,736 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:18:59,736 | ^~~~~~~~ 2021-07-15T22:19:00,157 In file included from ./src/formats/smileyformat.cpp:20: 2021-07-15T22:19:00,157 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::setChiral(int, Smiley::Chirality, const std::vector&)’: 2021-07-15T22:19:00,157 include/formats/smiley.h:649:24: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:19:00,158 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:19:00,158 | ~~~~^~~~~ 2021-07-15T22:19:00,158 include/formats/smiley.h:649:41: warning: unused parameter ‘chirality’ [-Wunused-parameter] 2021-07-15T22:19:00,158 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:19:00,158 | ~~~~~~~~~~^~~~~~~~~ 2021-07-15T22:19:00,158 include/formats/smiley.h:649:76: warning: unused parameter ‘chiralNbrs’ [-Wunused-parameter] 2021-07-15T22:19:00,158 649 | void setChiral(int index, Chirality chirality, const std::vector &chiralNbrs) {} 2021-07-15T22:19:00,159 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-15T22:19:00,159 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addAtom(int, bool, int, int, int, int)’: 2021-07-15T22:19:00,159 include/formats/smiley.h:655:22: warning: unused parameter ‘element’ [-Wunused-parameter] 2021-07-15T22:19:00,159 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,159 | ~~~~^~~~~~~ 2021-07-15T22:19:00,159 include/formats/smiley.h:655:36: warning: unused parameter ‘aromatic’ [-Wunused-parameter] 2021-07-15T22:19:00,159 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,159 | ~~~~~^~~~~~~~ 2021-07-15T22:19:00,160 include/formats/smiley.h:655:50: warning: unused parameter ‘isotope’ [-Wunused-parameter] 2021-07-15T22:19:00,160 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,160 | ~~~~^~~~~~~ 2021-07-15T22:19:00,160 include/formats/smiley.h:655:63: warning: unused parameter ‘hCount’ [-Wunused-parameter] 2021-07-15T22:19:00,160 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,160 | ~~~~^~~~~~ 2021-07-15T22:19:00,160 include/formats/smiley.h:655:75: warning: unused parameter ‘charge’ [-Wunused-parameter] 2021-07-15T22:19:00,161 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,161 | ~~~~^~~~~~ 2021-07-15T22:19:00,161 include/formats/smiley.h:655:87: warning: unused parameter ‘atomClass’ [-Wunused-parameter] 2021-07-15T22:19:00,161 655 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) {} 2021-07-15T22:19:00,161 | ~~~~^~~~~~~~~ 2021-07-15T22:19:00,161 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addBond(int, int, int, bool, bool)’: 2021-07-15T22:19:00,161 include/formats/smiley.h:659:22: warning: unused parameter ‘source’ [-Wunused-parameter] 2021-07-15T22:19:00,162 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:19:00,162 | ~~~~^~~~~~ 2021-07-15T22:19:00,162 include/formats/smiley.h:659:34: warning: unused parameter ‘target’ [-Wunused-parameter] 2021-07-15T22:19:00,162 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:19:00,162 | ~~~~^~~~~~ 2021-07-15T22:19:00,162 include/formats/smiley.h:659:46: warning: unused parameter ‘order’ [-Wunused-parameter] 2021-07-15T22:19:00,162 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:19:00,163 | ~~~~^~~~~ 2021-07-15T22:19:00,163 include/formats/smiley.h:659:58: warning: unused parameter ‘isUp’ [-Wunused-parameter] 2021-07-15T22:19:00,163 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:19:00,163 | ~~~~~^~~~ 2021-07-15T22:19:00,163 include/formats/smiley.h:659:69: warning: unused parameter ‘isDown’ [-Wunused-parameter] 2021-07-15T22:19:00,163 659 | void addBond(int source, int target, int order, bool isUp, bool isDown) {} 2021-07-15T22:19:00,163 | ~~~~~^~~~~~ 2021-07-15T22:19:00,163 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::operation(int)’: 2021-07-15T22:19:00,164 include/formats/smiley.h:667:24: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:19:00,164 667 | void operation(int type) {} 2021-07-15T22:19:00,164 | ~~~~^~~~ 2021-07-15T22:19:00,164 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::addOrganicSubsetAtom(int, bool)’: 2021-07-15T22:19:00,164 include/formats/smiley.h:671:35: warning: unused parameter ‘element’ [-Wunused-parameter] 2021-07-15T22:19:00,164 671 | void addOrganicSubsetAtom(int element, bool aromatic) {} 2021-07-15T22:19:00,164 | ~~~~^~~~~~~ 2021-07-15T22:19:00,165 include/formats/smiley.h:671:49: warning: unused parameter ‘aromatic’ [-Wunused-parameter] 2021-07-15T22:19:00,165 671 | void addOrganicSubsetAtom(int element, bool aromatic) {} 2021-07-15T22:19:00,165 | ~~~~~^~~~~~~~ 2021-07-15T22:19:00,165 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::atomPrimitive(int, int)’: 2021-07-15T22:19:00,165 include/formats/smiley.h:675:28: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:19:00,165 675 | void atomPrimitive(int type, int value) {} 2021-07-15T22:19:00,165 | ~~~~^~~~ 2021-07-15T22:19:00,166 include/formats/smiley.h:675:38: warning: unused parameter ‘value’ [-Wunused-parameter] 2021-07-15T22:19:00,166 675 | void atomPrimitive(int type, int value) {} 2021-07-15T22:19:00,166 | ~~~~^~~~~ 2021-07-15T22:19:00,166 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::bondPrimitive(int)’: 2021-07-15T22:19:00,166 include/formats/smiley.h:680:28: warning: unused parameter ‘type’ [-Wunused-parameter] 2021-07-15T22:19:00,166 680 | void bondPrimitive(int type) {} 2021-07-15T22:19:00,166 | ~~~~^~~~ 2021-07-15T22:19:00,167 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::setPrevious(int)’: 2021-07-15T22:19:00,167 include/formats/smiley.h:685:26: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:19:00,167 685 | void setPrevious(int index) {} 2021-07-15T22:19:00,167 | ~~~~^~~~~ 2021-07-15T22:19:00,167 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::startRingBond(int)’: 2021-07-15T22:19:00,167 include/formats/smiley.h:689:28: warning: unused parameter ‘number’ [-Wunused-parameter] 2021-07-15T22:19:00,167 689 | void startRingBond(int number) {} 2021-07-15T22:19:00,168 | ~~~~^~~~~~ 2021-07-15T22:19:00,168 include/formats/smiley.h: In member function ‘void Smiley::CallbackBase::endRingBond(int, int)’: 2021-07-15T22:19:00,168 include/formats/smiley.h:693:26: warning: unused parameter ‘number’ [-Wunused-parameter] 2021-07-15T22:19:00,168 693 | void endRingBond(int number, int index) {} 2021-07-15T22:19:00,168 | ~~~~^~~~~~ 2021-07-15T22:19:00,168 include/formats/smiley.h:693:38: warning: unused parameter ‘index’ [-Wunused-parameter] 2021-07-15T22:19:00,168 693 | void endRingBond(int number, int index) {} 2021-07-15T22:19:00,168 | ~~~~^~~~~ 2021-07-15T22:19:00,257 ./src/formats/smileyformat.cpp: In member function ‘void OpenBabel::OpenBabelCallback::addAtom(int, bool, int, int, int, int)’: 2021-07-15T22:19:00,257 ./src/formats/smileyformat.cpp:58:87: warning: unused parameter ‘atomClass’ [-Wunused-parameter] 2021-07-15T22:19:00,258 58 | void addAtom(int element, bool aromatic, int isotope, int hCount, int charge, int atomClass) 2021-07-15T22:19:00,258 | ~~~~^~~~~~~~~ 2021-07-15T22:19:00,260 ./src/formats/smileyformat.cpp: In member function ‘void OpenBabel::OpenBabelCallback::setChiral(int, Smiley::Chirality, const std::vector&)’: 2021-07-15T22:19:00,260 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘NotChiral’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,261 153 | switch (chirality) { 2021-07-15T22:19:00,261 | ^ 2021-07-15T22:19:00,261 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TH1’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,261 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TH2’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,261 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘AL1’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,261 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘AL2’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,261 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP1’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP2’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘SP3’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB1’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB2’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB3’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB4’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,262 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB5’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB6’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB7’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB8’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB9’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB10’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB11’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,263 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB12’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB13’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB14’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB15’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB16’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB17’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB18’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,264 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB19’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘TB20’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH1’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH2’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH3’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH4’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH5’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,265 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH6’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH7’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH8’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH9’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH10’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH11’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH12’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,266 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH13’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH14’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH15’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH16’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH17’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH18’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH19’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH20’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,267 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH21’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH22’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH23’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH24’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH25’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH26’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH27’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH28’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH29’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,268 ./src/formats/smileyformat.cpp:153:14: warning: enumeration value ‘OH30’ not handled in switch [-Wswitch] 2021-07-15T22:19:00,314 ./src/formats/smileyformat.cpp: In member function ‘bool OpenBabel::SmileyFormat::AssignNbrAtoms(const std::vector&, OpenBabel::OBAtom*, long unsigned int&, long unsigned int&)’: 2021-07-15T22:19:00,314 ./src/formats/smileyformat.cpp:457:21: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:19:00,314 457 | aboveId = above ? above->GetId() : OBStereo::ImplicitRef; 2021-07-15T22:19:00,314 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:00,314 ./src/formats/smileyformat.cpp:458:21: warning: enumerated and non-enumerated type in conditional expression [-Wextra] 2021-07-15T22:19:00,315 458 | belowId = below ? below->GetId() : OBStereo::ImplicitRef; 2021-07-15T22:19:00,315 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:00,855 In file included from ./src/formats/smileyformat.cpp:20: 2021-07-15T22:19:00,855 include/formats/smiley.h: In instantiation of ‘void Smiley::Parser::processStereochemistry() [with Callback = OpenBabel::OpenBabelCallback]’: 2021-07-15T22:19:00,856 include/formats/smiley.h:2707:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:19:00,856 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:19:00,856 include/formats/smiley.h:2642:43: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:19:00,856 2642 | if (m_chiralInfo[i].nbrs.size() != expectedValence && m_exceptions & InvalidChiralValence) 2021-07-15T22:19:00,856 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:01,448 include/formats/smiley.h: In instantiation of ‘Smiley::Parser::RingBondInfo::RingBondInfo(int, int, bool, bool, bool, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]’: 2021-07-15T22:19:01,449 include/formats/smiley.h:2409:41: required from ‘void Smiley::Parser::processRingBond(int, std::size_t) [with Callback = OpenBabel::OpenBabelCallback; std::size_t = unsigned int]’ 2021-07-15T22:19:01,449 include/formats/smiley.h:2429:11: required from ‘void Smiley::Parser::parseRingBond() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,449 include/formats/smiley.h:2507:13: required from ‘void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,449 include/formats/smiley.h:2698:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:19:01,449 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:19:01,449 include/formats/smiley.h:986:14: warning: ‘Smiley::Parser::RingBondInfo::isExplicit’ will be initialized after [-Wreorder] 2021-07-15T22:19:01,450 986 | bool isExplicit; 2021-07-15T22:19:01,450 | ^~~~~~~~~~ 2021-07-15T22:19:01,450 include/formats/smiley.h:981:21: warning: ‘std::size_t Smiley::Parser::RingBondInfo::pos’ [-Wreorder] 2021-07-15T22:19:01,450 981 | std::size_t pos; 2021-07-15T22:19:01,450 | ^~~ 2021-07-15T22:19:01,450 include/formats/smiley.h:974:9: warning: when initialized here [-Wreorder] 2021-07-15T22:19:01,451 974 | RingBondInfo(int number_, int order_, bool isUp_, bool isDown_, 2021-07-15T22:19:01,451 | ^~~~~~~~~~~~ 2021-07-15T22:19:01,518 include/formats/smiley.h: In instantiation of ‘bool Smiley::Parser::parseCharNumber(char, int, int&, bool, bool) [with Callback = OpenBabel::OpenBabelCallback]’: 2021-07-15T22:19:01,519 include/formats/smiley.h:1988:15: required from ‘void Smiley::Parser::parseAtomExpr() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,519 include/formats/smiley.h:2092:11: required from ‘void Smiley::Parser::parseBracketAtom() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,519 include/formats/smiley.h:2217:13: required from ‘bool Smiley::Parser::parseAtom() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,519 include/formats/smiley.h:2495:16: required from ‘void Smiley::Parser::parseChain() [with Callback = OpenBabel::OpenBabelCallback]’ 2021-07-15T22:19:01,519 include/formats/smiley.h:2698:9: required from ‘void Smiley::Parser::parse(const string&) [with Callback = OpenBabel::OpenBabelCallback; std::string = std::__cxx11::basic_string]’ 2021-07-15T22:19:01,519 ./src/formats/smileyformat.cpp:365:26: required from here 2021-07-15T22:19:01,519 include/formats/smiley.h:1774:37: warning: unused parameter ‘noDefault’ [-Wunused-parameter] 2021-07-15T22:19:01,520 1774 | bool firstPrimitive, bool noDefault = false) 2021-07-15T22:19:01,520 | ~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:19:09,063 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:09,063 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o /tmp/ccL1KGHp.s 2021-07-15T22:19:09,069 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:09,916 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:09,916 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:09,917 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/smileyformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:09,920 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/stlformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/stlformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:09,932 Using built-in specs. 2021-07-15T22:19:09,933 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:09,933 Target: arm-linux-gnueabihf 2021-07-15T22:19:09,934 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:09,934 Thread model: posix 2021-07-15T22:19:09,934 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:09,934 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:09,934 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:09,935 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/stlformat.cpp -quiet -dumpbase stlformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/stlformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccuXJ1hS.s 2021-07-15T22:19:09,948 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:09,948 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:09,949 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:09,950 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:09,951 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:09,951 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:09,951 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:09,951 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:09,952 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:09,952 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:09,952 #include "..." search starts here: 2021-07-15T22:19:09,953 #include <...> search starts here: 2021-07-15T22:19:09,953 /usr/include/eigen3 2021-07-15T22:19:09,953 include 2021-07-15T22:19:09,954 /usr/include/python3.9 2021-07-15T22:19:09,954 /usr/include/c++/10 2021-07-15T22:19:09,954 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:09,954 /usr/include/c++/10/backward 2021-07-15T22:19:09,954 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:09,954 /usr/local/include 2021-07-15T22:19:09,954 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:09,955 /usr/include 2021-07-15T22:19:09,955 End of search list. 2021-07-15T22:19:09,961 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:09,962 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:09,962 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:09,971 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:11,340 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:11,340 from include/openbabel/mol.h:43, 2021-07-15T22:19:11,340 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:19:11,340 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:11,340 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:11,340 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:11,340 | ^ 2021-07-15T22:19:11,341 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:11,341 37 | # define UNUSED(x) x 2021-07-15T22:19:11,341 | ^ 2021-07-15T22:19:12,038 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:12,038 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:19:12,038 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:12,038 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:12,039 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:12,039 | ^ 2021-07-15T22:19:12,039 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:12,039 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:12,039 | ^~~~~~~~ 2021-07-15T22:19:12,043 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:12,043 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:12,043 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:12,043 | ^ 2021-07-15T22:19:12,044 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:12,044 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:12,044 | ^~~~~~~~ 2021-07-15T22:19:12,061 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:12,061 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:12,061 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:12,061 | ^ 2021-07-15T22:19:12,061 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:12,061 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:12,062 | ^~~~~~~~ 2021-07-15T22:19:12,067 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:12,067 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:19:12,067 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:12,067 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:12,067 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:12,067 | ^ 2021-07-15T22:19:12,067 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:12,068 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:12,068 | ^~~~~~~~ 2021-07-15T22:19:12,355 ./src/formats/stlformat.cpp: In member function ‘virtual int OpenBabel::STLFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:19:12,355 ./src/formats/stlformat.cpp:95:36: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:19:12,355 95 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:19:12,355 | ~~~~^ 2021-07-15T22:19:12,355 ./src/formats/stlformat.cpp:95:64: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:19:12,355 95 | virtual int SkipObjects( int n, OpenBabel::OBConversion* pConv ) { return 0; } 2021-07-15T22:19:12,356 | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:19:12,371 ./src/formats/stlformat.cpp: In function ‘void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)’: 2021-07-15T22:19:12,371 ./src/formats/stlformat.cpp:149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:19:12,372 149 | for( int i=0 ; i < points.size()-2; i++ ) { 2021-07-15T22:19:12,372 | ~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,368 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:19:14,369 from include/openbabel/mol.h:35, 2021-07-15T22:19:14,369 from ./src/formats/stlformat.cpp:28: 2021-07-15T22:19:14,369 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:19:14,369 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:19:14,369 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:19:14,369 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,446 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::Triangle}; _Tp = OpenBabel::Triangle; _Alloc = std::allocator]’: 2021-07-15T22:19:14,446 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:19:14,550 /usr/include/c++/10/bits/vector.tcc: In function ‘void OpenBabel::map_sphere(std::vector&, OpenBabel::vector3, double, uint16_t)’: 2021-07-15T22:19:14,551 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:19:14,551 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:19:14,551 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,551 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:19:14,552 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:19:14,552 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,553 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:19:14,553 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:19:14,553 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,554 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:19:14,554 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:19:14,554 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:14,914 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:14,916 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/stlformat.o /tmp/ccuXJ1hS.s 2021-07-15T22:19:14,922 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:15,154 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:15,154 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:15,155 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/stlformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:15,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/svgformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/svgformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:15,166 Using built-in specs. 2021-07-15T22:19:15,168 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:15,168 Target: arm-linux-gnueabihf 2021-07-15T22:19:15,168 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:15,168 Thread model: posix 2021-07-15T22:19:15,169 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:15,169 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:15,170 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:15,173 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/svgformat.cpp -quiet -dumpbase svgformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/svgformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccdt6Yn5.s 2021-07-15T22:19:15,187 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:15,187 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:15,188 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:15,189 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:15,189 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:15,189 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:15,189 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:15,190 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:15,190 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:15,190 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:15,190 #include "..." search starts here: 2021-07-15T22:19:15,190 #include <...> search starts here: 2021-07-15T22:19:15,191 /usr/include/eigen3 2021-07-15T22:19:15,191 include 2021-07-15T22:19:15,191 /usr/include/python3.9 2021-07-15T22:19:15,191 /usr/include/c++/10 2021-07-15T22:19:15,192 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:15,192 /usr/include/c++/10/backward 2021-07-15T22:19:15,192 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:15,192 /usr/local/include 2021-07-15T22:19:15,192 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:15,193 /usr/include 2021-07-15T22:19:15,193 End of search list. 2021-07-15T22:19:15,194 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:15,195 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:15,195 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:15,214 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:16,600 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:16,600 from include/openbabel/mol.h:43, 2021-07-15T22:19:16,600 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:16,600 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:19:16,600 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:16,600 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:16,601 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:16,601 | ^ 2021-07-15T22:19:16,601 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:16,601 37 | # define UNUSED(x) x 2021-07-15T22:19:16,601 | ^ 2021-07-15T22:19:17,298 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:17,299 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:17,299 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:19:17,299 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:17,299 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:17,299 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:17,299 | ^ 2021-07-15T22:19:17,300 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:17,300 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:17,300 | ^~~~~~~~ 2021-07-15T22:19:17,304 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:17,304 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:17,304 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:17,304 | ^ 2021-07-15T22:19:17,304 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:17,304 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:17,305 | ^~~~~~~~ 2021-07-15T22:19:17,321 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:17,321 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:17,322 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:17,322 | ^ 2021-07-15T22:19:17,322 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:17,322 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:17,322 | ^~~~~~~~ 2021-07-15T22:19:17,327 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:17,327 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:17,327 from ./src/formats/svgformat.cpp:15: 2021-07-15T22:19:17,328 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:17,328 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:17,328 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:17,328 | ^ 2021-07-15T22:19:17,328 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:17,328 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:17,328 | ^~~~~~~~ 2021-07-15T22:19:17,829 ./src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: 2021-07-15T22:19:17,829 ./src/formats/svgformat.cpp:222:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-15T22:19:17,830 222 | bool nomore = _nmax && (_objects.size()==_nmax); 2021-07-15T22:19:17,830 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-15T22:19:17,834 ./src/formats/svgformat.cpp:244:18: warning: unused variable ‘n’ [-Wunused-variable] 2021-07-15T22:19:17,834 244 | unsigned int n=0; 2021-07-15T22:19:17,834 | ^ 2021-07-15T22:19:17,836 ./src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:19:17,836 ./src/formats/svgformat.cpp:269:8: warning: unused variable ‘ret’ [-Wunused-variable] 2021-07-15T22:19:17,836 269 | bool ret = WriteSVG(pConv,_objects); 2021-07-15T22:19:17,836 | ^~~ 2021-07-15T22:19:22,360 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:22,361 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/svgformat.o /tmp/ccdt6Yn5.s 2021-07-15T22:19:22,367 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:22,783 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:22,783 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:22,784 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/svgformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:22,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/textformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/textformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:22,797 Using built-in specs. 2021-07-15T22:19:22,798 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:22,799 Target: arm-linux-gnueabihf 2021-07-15T22:19:22,799 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:22,799 Thread model: posix 2021-07-15T22:19:22,799 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:22,800 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:22,801 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:22,804 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/textformat.cpp -quiet -dumpbase textformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/textformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cctvtyAj.s 2021-07-15T22:19:22,818 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:22,819 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:22,819 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:22,820 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:22,820 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:22,821 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:22,821 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:22,821 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:22,822 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:22,822 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:22,822 #include "..." search starts here: 2021-07-15T22:19:22,822 #include <...> search starts here: 2021-07-15T22:19:22,822 /usr/include/eigen3 2021-07-15T22:19:22,823 include 2021-07-15T22:19:22,823 /usr/include/python3.9 2021-07-15T22:19:22,823 /usr/include/c++/10 2021-07-15T22:19:22,823 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:22,823 /usr/include/c++/10/backward 2021-07-15T22:19:22,824 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:22,824 /usr/local/include 2021-07-15T22:19:22,824 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:22,824 /usr/include 2021-07-15T22:19:22,824 End of search list. 2021-07-15T22:19:22,826 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:22,826 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:22,831 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:22,844 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:24,226 In file included from include/openbabel/text.h:23, 2021-07-15T22:19:24,226 from ./src/formats/textformat.cpp:15: 2021-07-15T22:19:24,227 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:24,227 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:24,227 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:24,227 | ^ 2021-07-15T22:19:24,227 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:24,227 37 | # define UNUSED(x) x 2021-07-15T22:19:24,227 | ^ 2021-07-15T22:19:25,422 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:25,422 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/textformat.o /tmp/cctvtyAj.s 2021-07-15T22:19:25,427 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:25,587 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:25,587 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:25,587 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/textformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:25,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/thermoformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:25,598 Using built-in specs. 2021-07-15T22:19:25,599 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:25,600 Target: arm-linux-gnueabihf 2021-07-15T22:19:25,600 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:25,600 Thread model: posix 2021-07-15T22:19:25,600 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:25,601 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:25,602 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:25,604 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/thermoformat.cpp -quiet -dumpbase thermoformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccujnywx.s 2021-07-15T22:19:25,616 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:25,617 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:25,617 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:25,618 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:25,618 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:25,618 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:25,619 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:25,619 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:25,619 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:25,619 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:25,619 #include "..." search starts here: 2021-07-15T22:19:25,620 #include <...> search starts here: 2021-07-15T22:19:25,620 /usr/include/eigen3 2021-07-15T22:19:25,620 include 2021-07-15T22:19:25,620 /usr/include/python3.9 2021-07-15T22:19:25,620 /usr/include/c++/10 2021-07-15T22:19:25,621 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:25,621 /usr/include/c++/10/backward 2021-07-15T22:19:25,621 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:25,621 /usr/local/include 2021-07-15T22:19:25,621 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:25,622 /usr/include 2021-07-15T22:19:25,622 End of search list. 2021-07-15T22:19:25,623 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:25,623 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:25,623 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:25,640 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:27,111 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:27,111 from include/openbabel/mol.h:43, 2021-07-15T22:19:27,111 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:27,111 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:19:27,111 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:27,111 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:27,112 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:27,112 | ^ 2021-07-15T22:19:27,112 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:27,112 37 | # define UNUSED(x) x 2021-07-15T22:19:27,112 | ^ 2021-07-15T22:19:27,818 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:27,818 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:27,818 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:19:27,818 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:27,818 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:27,819 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:27,819 | ^ 2021-07-15T22:19:27,819 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:27,819 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:27,819 | ^~~~~~~~ 2021-07-15T22:19:27,821 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:27,822 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:27,822 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:27,822 | ^ 2021-07-15T22:19:27,822 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:27,822 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:27,822 | ^~~~~~~~ 2021-07-15T22:19:27,838 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:27,838 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:27,838 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:27,839 | ^ 2021-07-15T22:19:27,839 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:27,839 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:27,839 | ^~~~~~~~ 2021-07-15T22:19:27,843 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:27,843 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:27,843 from ./src/formats/thermoformat.cpp:19: 2021-07-15T22:19:27,843 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:27,843 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:27,844 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:27,844 | ^ 2021-07-15T22:19:27,844 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:27,844 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:27,844 | ^~~~~~~~ 2021-07-15T22:19:28,148 In file included from ./src/formats/thermoformat.cpp:20: 2021-07-15T22:19:28,149 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBRateData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:28,149 include/openbabel/kinetics.h:44:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:19:28,149 44 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBRateData(*this);} 2021-07-15T22:19:28,149 | ~~~~~~~~^~~~~~ 2021-07-15T22:19:28,167 include/openbabel/kinetics.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBNasaThermoData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:28,167 include/openbabel/kinetics.h:144:40: warning: unused parameter ‘parent’ [-Wunused-parameter] 2021-07-15T22:19:28,168 144 | virtual OBGenericData* Clone(OBBase* parent) const{return new OBNasaThermoData(*this);} 2021-07-15T22:19:28,168 | ~~~~~~~~^~~~~~ 2021-07-15T22:19:31,377 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:31,378 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o /tmp/ccujnywx.s 2021-07-15T22:19:31,383 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:31,693 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:31,693 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:31,693 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/thermoformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:31,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/tinkerformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:31,705 Using built-in specs. 2021-07-15T22:19:31,707 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:31,707 Target: arm-linux-gnueabihf 2021-07-15T22:19:31,707 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:31,707 Thread model: posix 2021-07-15T22:19:31,707 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:31,707 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:31,708 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:31,708 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/tinkerformat.cpp -quiet -dumpbase tinkerformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc4KRBYK.s 2021-07-15T22:19:31,720 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:31,721 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:31,721 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:31,721 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:31,721 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:31,722 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:31,722 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:31,722 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:31,722 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:31,722 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:31,722 #include "..." search starts here: 2021-07-15T22:19:31,723 #include <...> search starts here: 2021-07-15T22:19:31,723 /usr/include/eigen3 2021-07-15T22:19:31,723 include 2021-07-15T22:19:31,723 /usr/include/python3.9 2021-07-15T22:19:31,723 /usr/include/c++/10 2021-07-15T22:19:31,723 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:31,724 /usr/include/c++/10/backward 2021-07-15T22:19:31,724 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:31,724 /usr/local/include 2021-07-15T22:19:31,724 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:31,724 /usr/include 2021-07-15T22:19:31,724 End of search list. 2021-07-15T22:19:31,724 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:31,725 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:31,725 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:31,740 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:33,350 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:33,351 from include/openbabel/mol.h:43, 2021-07-15T22:19:33,351 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:33,351 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:19:33,351 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:33,351 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:33,351 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:33,352 | ^ 2021-07-15T22:19:33,352 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:33,352 37 | # define UNUSED(x) x 2021-07-15T22:19:33,352 | ^ 2021-07-15T22:19:34,045 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:34,046 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:34,046 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:19:34,046 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:34,046 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:34,046 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:34,046 | ^ 2021-07-15T22:19:34,047 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:34,047 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:34,047 | ^~~~~~~~ 2021-07-15T22:19:34,049 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:34,049 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:34,050 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:34,050 | ^ 2021-07-15T22:19:34,050 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:34,050 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:34,050 | ^~~~~~~~ 2021-07-15T22:19:34,066 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:34,066 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:34,066 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:34,066 | ^ 2021-07-15T22:19:34,066 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:34,067 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:34,067 | ^~~~~~~~ 2021-07-15T22:19:34,071 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:34,071 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:34,071 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:19:34,071 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:34,071 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:34,071 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:34,071 | ^ 2021-07-15T22:19:34,072 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:34,072 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:34,072 | ^~~~~~~~ 2021-07-15T22:19:34,427 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:34,428 from include/openbabel/mol.h:43, 2021-07-15T22:19:34,428 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:34,428 from ./src/formats/tinkerformat.cpp:17: 2021-07-15T22:19:34,428 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::Energy(bool)’: 2021-07-15T22:19:34,428 include/openbabel/forcefield.h:902:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,428 902 | virtual double Energy(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,428 | ^ 2021-07-15T22:19:34,429 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,429 37 | # define UNUSED(x) x 2021-07-15T22:19:34,429 | ^ 2021-07-15T22:19:34,429 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Bond(bool)’: 2021-07-15T22:19:34,429 include/openbabel/forcefield.h:909:39: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,429 909 | virtual double E_Bond(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,430 | ^ 2021-07-15T22:19:34,430 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,430 37 | # define UNUSED(x) x 2021-07-15T22:19:34,430 | ^ 2021-07-15T22:19:34,430 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Angle(bool)’: 2021-07-15T22:19:34,430 include/openbabel/forcefield.h:916:40: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,430 916 | virtual double E_Angle(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,431 | ^ 2021-07-15T22:19:34,431 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,431 37 | # define UNUSED(x) x 2021-07-15T22:19:34,431 | ^ 2021-07-15T22:19:34,431 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_StrBnd(bool)’: 2021-07-15T22:19:34,431 include/openbabel/forcefield.h:923:41: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,431 923 | virtual double E_StrBnd(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,432 | ^ 2021-07-15T22:19:34,432 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,432 37 | # define UNUSED(x) x 2021-07-15T22:19:34,432 | ^ 2021-07-15T22:19:34,432 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Torsion(bool)’: 2021-07-15T22:19:34,432 include/openbabel/forcefield.h:930:42: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,432 930 | virtual double E_Torsion(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,433 | ^ 2021-07-15T22:19:34,433 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,433 37 | # define UNUSED(x) x 2021-07-15T22:19:34,433 | ^ 2021-07-15T22:19:34,433 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_OOP(bool)’: 2021-07-15T22:19:34,433 include/openbabel/forcefield.h:937:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,433 937 | virtual double E_OOP(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,433 | ^ 2021-07-15T22:19:34,434 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,434 37 | # define UNUSED(x) x 2021-07-15T22:19:34,434 | ^ 2021-07-15T22:19:34,434 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_VDW(bool)’: 2021-07-15T22:19:34,434 include/openbabel/forcefield.h:944:38: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,434 944 | virtual double E_VDW(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,434 | ^ 2021-07-15T22:19:34,434 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,435 37 | # define UNUSED(x) x 2021-07-15T22:19:34,435 | ^ 2021-07-15T22:19:34,435 include/openbabel/forcefield.h: In member function ‘virtual double OpenBabel::OBForceField::E_Electrostatic(bool)’: 2021-07-15T22:19:34,435 include/openbabel/forcefield.h:951:48: warning: unused parameter ‘gradients’ [-Wunused-parameter] 2021-07-15T22:19:34,435 951 | virtual double E_Electrostatic(bool UNUSED(gradients) = true) { return 0.0f; } 2021-07-15T22:19:34,435 | ^ 2021-07-15T22:19:34,435 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:34,436 37 | # define UNUSED(x) x 2021-07-15T22:19:34,436 | ^ 2021-07-15T22:19:34,446 ./src/formats/tinkerformat.cpp: In member function ‘virtual bool OpenBabel::TinkerFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:19:34,446 ./src/formats/tinkerformat.cpp:101:9: warning: unused variable ‘atomicNum’ [-Wunused-variable] 2021-07-15T22:19:34,446 101 | int atomicNum; 2021-07-15T22:19:34,446 | ^~~~~~~~~ 2021-07-15T22:19:34,455 ./src/formats/tinkerformat.cpp: In function ‘int OpenBabel::SetMM3Type(OpenBabel::OBAtom*)’: 2021-07-15T22:19:34,455 ./src/formats/tinkerformat.cpp:377:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:19:34,455 377 | if (b->GetHyb() == 2) // S=C 2021-07-15T22:19:34,455 | ^~ 2021-07-15T22:19:34,456 ./src/formats/tinkerformat.cpp:378:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:19:34,456 378 | countNeighborC++; break; 2021-07-15T22:19:34,456 | ^~~~~ 2021-07-15T22:19:34,456 ./src/formats/tinkerformat.cpp:220:17: warning: unused variable ‘c’ [-Wunused-variable] 2021-07-15T22:19:34,456 220 | OBAtom *b, *c; // neighbors 2021-07-15T22:19:34,456 | ^ 2021-07-15T22:19:37,086 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:37,086 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o /tmp/cc4KRBYK.s 2021-07-15T22:19:37,093 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:37,348 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:37,348 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:37,348 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/tinkerformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:37,350 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/titleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/titleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:37,359 Using built-in specs. 2021-07-15T22:19:37,360 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:37,360 Target: arm-linux-gnueabihf 2021-07-15T22:19:37,361 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:37,361 Thread model: posix 2021-07-15T22:19:37,361 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:37,361 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:37,361 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:37,362 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/titleformat.cpp -quiet -dumpbase titleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/titleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccZeT4k2.s 2021-07-15T22:19:37,373 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:37,373 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:37,373 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:37,373 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:37,373 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:37,374 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:37,374 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:37,374 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:37,374 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:37,375 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:37,375 #include "..." search starts here: 2021-07-15T22:19:37,375 #include <...> search starts here: 2021-07-15T22:19:37,375 /usr/include/eigen3 2021-07-15T22:19:37,375 include 2021-07-15T22:19:37,375 /usr/include/python3.9 2021-07-15T22:19:37,375 /usr/include/c++/10 2021-07-15T22:19:37,375 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:37,376 /usr/include/c++/10/backward 2021-07-15T22:19:37,376 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:37,376 /usr/local/include 2021-07-15T22:19:37,376 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:37,376 /usr/include 2021-07-15T22:19:37,376 End of search list. 2021-07-15T22:19:37,377 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:37,377 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:37,377 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:37,392 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:38,754 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:38,754 from include/openbabel/mol.h:43, 2021-07-15T22:19:38,754 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:38,755 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:19:38,755 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:38,755 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:38,755 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:38,755 | ^ 2021-07-15T22:19:38,755 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:38,755 37 | # define UNUSED(x) x 2021-07-15T22:19:38,755 | ^ 2021-07-15T22:19:39,449 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:39,449 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:39,449 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:19:39,449 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:39,450 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:39,450 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:39,450 | ^ 2021-07-15T22:19:39,450 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:39,450 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:39,450 | ^~~~~~~~ 2021-07-15T22:19:39,453 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:39,453 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:39,453 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:39,453 | ^ 2021-07-15T22:19:39,453 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:39,454 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:39,454 | ^~~~~~~~ 2021-07-15T22:19:39,469 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:39,469 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:39,470 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:39,470 | ^ 2021-07-15T22:19:39,470 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:39,470 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:39,470 | ^~~~~~~~ 2021-07-15T22:19:39,474 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:39,474 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:39,474 from ./src/formats/titleformat.cpp:19: 2021-07-15T22:19:39,474 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:39,475 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:39,475 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:39,475 | ^ 2021-07-15T22:19:39,475 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:39,475 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:39,475 | ^~~~~~~~ 2021-07-15T22:19:41,752 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:41,752 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/titleformat.o /tmp/ccZeT4k2.s 2021-07-15T22:19:41,758 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:41,942 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:41,942 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:41,942 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/titleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:41,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/turbomoleformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:41,953 Using built-in specs. 2021-07-15T22:19:41,953 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:41,954 Target: arm-linux-gnueabihf 2021-07-15T22:19:41,954 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:41,954 Thread model: posix 2021-07-15T22:19:41,954 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:41,954 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:41,955 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:41,955 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/turbomoleformat.cpp -quiet -dumpbase turbomoleformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccWPr1Hd.s 2021-07-15T22:19:41,966 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:41,967 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:41,967 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:41,967 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:41,967 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:41,968 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:41,968 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:41,968 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:41,968 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:41,968 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:41,968 #include "..." search starts here: 2021-07-15T22:19:41,969 #include <...> search starts here: 2021-07-15T22:19:41,969 /usr/include/eigen3 2021-07-15T22:19:41,969 include 2021-07-15T22:19:41,969 /usr/include/python3.9 2021-07-15T22:19:41,969 /usr/include/c++/10 2021-07-15T22:19:41,969 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:41,969 /usr/include/c++/10/backward 2021-07-15T22:19:41,970 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:41,970 /usr/local/include 2021-07-15T22:19:41,970 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:41,970 /usr/include 2021-07-15T22:19:41,970 End of search list. 2021-07-15T22:19:41,970 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:41,970 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:41,971 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:41,985 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:43,347 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:43,347 from include/openbabel/mol.h:43, 2021-07-15T22:19:43,348 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:43,348 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:19:43,348 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:43,348 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:43,348 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:43,348 | ^ 2021-07-15T22:19:43,349 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:43,349 37 | # define UNUSED(x) x 2021-07-15T22:19:43,349 | ^ 2021-07-15T22:19:44,047 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:44,048 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:44,048 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:19:44,048 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:44,048 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:44,048 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:44,048 | ^ 2021-07-15T22:19:44,049 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:44,049 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:44,049 | ^~~~~~~~ 2021-07-15T22:19:44,051 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:44,051 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:44,052 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:44,052 | ^ 2021-07-15T22:19:44,052 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:44,052 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:44,052 | ^~~~~~~~ 2021-07-15T22:19:44,068 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:44,068 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:44,068 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:44,068 | ^ 2021-07-15T22:19:44,069 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:44,069 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:44,069 | ^~~~~~~~ 2021-07-15T22:19:44,073 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:44,073 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:44,073 from ./src/formats/turbomoleformat.cpp:18: 2021-07-15T22:19:44,073 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:44,073 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:44,073 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:44,074 | ^ 2021-07-15T22:19:44,074 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:44,074 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:44,074 | ^~~~~~~~ 2021-07-15T22:19:46,544 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:46,545 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o /tmp/ccWPr1Hd.s 2021-07-15T22:19:46,551 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:46,750 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:46,750 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:46,751 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/turbomoleformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:46,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/unichemformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:46,761 Using built-in specs. 2021-07-15T22:19:46,762 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:46,762 Target: arm-linux-gnueabihf 2021-07-15T22:19:46,763 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:46,763 Thread model: posix 2021-07-15T22:19:46,763 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:46,763 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:46,763 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:46,764 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/unichemformat.cpp -quiet -dumpbase unichemformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cclkHIvs.s 2021-07-15T22:19:46,777 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:46,777 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:46,778 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:46,778 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:46,779 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:46,779 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:46,779 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:46,779 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:46,779 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:46,780 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:46,780 #include "..." search starts here: 2021-07-15T22:19:46,780 #include <...> search starts here: 2021-07-15T22:19:46,780 /usr/include/eigen3 2021-07-15T22:19:46,780 include 2021-07-15T22:19:46,780 /usr/include/python3.9 2021-07-15T22:19:46,780 /usr/include/c++/10 2021-07-15T22:19:46,781 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:46,781 /usr/include/c++/10/backward 2021-07-15T22:19:46,781 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:46,781 /usr/local/include 2021-07-15T22:19:46,781 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:46,781 /usr/include 2021-07-15T22:19:46,781 End of search list. 2021-07-15T22:19:46,782 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:46,782 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:46,782 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:46,796 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:48,164 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:48,164 from include/openbabel/mol.h:43, 2021-07-15T22:19:48,165 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:48,165 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:19:48,165 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:48,165 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:48,165 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:48,165 | ^ 2021-07-15T22:19:48,166 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:48,166 37 | # define UNUSED(x) x 2021-07-15T22:19:48,166 | ^ 2021-07-15T22:19:48,860 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:48,860 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:48,860 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:19:48,861 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:48,861 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:48,861 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:48,861 | ^ 2021-07-15T22:19:48,861 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:48,862 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:48,862 | ^~~~~~~~ 2021-07-15T22:19:48,864 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:48,864 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:48,864 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:48,864 | ^ 2021-07-15T22:19:48,865 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:48,865 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:48,865 | ^~~~~~~~ 2021-07-15T22:19:48,880 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:48,881 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:48,881 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:48,881 | ^ 2021-07-15T22:19:48,881 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:48,881 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:48,882 | ^~~~~~~~ 2021-07-15T22:19:48,885 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:48,886 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:48,886 from ./src/formats/unichemformat.cpp:17: 2021-07-15T22:19:48,886 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:48,886 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:48,886 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:48,886 | ^ 2021-07-15T22:19:48,886 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:48,887 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:48,887 | ^~~~~~~~ 2021-07-15T22:19:51,489 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:51,489 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o /tmp/cclkHIvs.s 2021-07-15T22:19:51,495 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:19:51,712 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:19:51,713 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:19:51,713 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/unichemformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:51,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/vaspformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:19:51,723 Using built-in specs. 2021-07-15T22:19:51,724 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:19:51,724 Target: arm-linux-gnueabihf 2021-07-15T22:19:51,725 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:19:51,725 Thread model: posix 2021-07-15T22:19:51,725 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:19:51,725 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:19:51,725 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:19:51,725 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/vaspformat.cpp -quiet -dumpbase vaspformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/cc6WU4QP.s 2021-07-15T22:19:51,737 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:51,738 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:51,738 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:51,739 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:19:51,739 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:19:51,739 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:19:51,739 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:19:51,739 ignoring duplicate directory "/usr/include/" 2021-07-15T22:19:51,739 as it is a non-system directory that duplicates a system directory 2021-07-15T22:19:51,740 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:19:51,740 #include "..." search starts here: 2021-07-15T22:19:51,740 #include <...> search starts here: 2021-07-15T22:19:51,740 /usr/include/eigen3 2021-07-15T22:19:51,740 include 2021-07-15T22:19:51,740 /usr/include/python3.9 2021-07-15T22:19:51,741 /usr/include/c++/10 2021-07-15T22:19:51,741 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:19:51,741 /usr/include/c++/10/backward 2021-07-15T22:19:51,741 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:19:51,741 /usr/local/include 2021-07-15T22:19:51,741 /usr/include/arm-linux-gnueabihf 2021-07-15T22:19:51,741 /usr/include 2021-07-15T22:19:51,742 End of search list. 2021-07-15T22:19:51,742 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:19:51,742 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:19:51,742 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:19:51,756 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:19:53,151 In file included from include/openbabel/atom.h:33, 2021-07-15T22:19:53,152 from include/openbabel/mol.h:43, 2021-07-15T22:19:53,152 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:53,152 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:19:53,152 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:19:53,152 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:19:53,152 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:19:53,153 | ^ 2021-07-15T22:19:53,153 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:19:53,153 37 | # define UNUSED(x) x 2021-07-15T22:19:53,153 | ^ 2021-07-15T22:19:53,847 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:53,847 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:53,847 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:19:53,848 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:53,848 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:53,848 862 | {return new OBVibrationData(*this);} 2021-07-15T22:19:53,848 | ^ 2021-07-15T22:19:53,848 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:19:53,848 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:19:53,849 | ^~~~~~~~ 2021-07-15T22:19:53,851 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:53,851 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:53,851 907 | {return new OBDOSData(*this);} 2021-07-15T22:19:53,851 | ^ 2021-07-15T22:19:53,852 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:19:53,852 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:19:53,852 | ^~~~~~~~ 2021-07-15T22:19:53,867 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:53,867 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:53,868 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:19:53,868 | ^ 2021-07-15T22:19:53,868 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:19:53,868 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:19:53,868 | ^~~~~~~~ 2021-07-15T22:19:53,872 In file included from include/openbabel/mol.h:52, 2021-07-15T22:19:53,872 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:53,872 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:19:53,873 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:19:53,873 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:19:53,873 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:19:53,873 | ^ 2021-07-15T22:19:53,873 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:19:53,873 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:19:53,873 | ^~~~~~~~ 2021-07-15T22:19:54,331 ./src/formats/vaspformat.cpp: In member function ‘virtual int OpenBabel::VASPFormat::SkipObjects(int, OpenBabel::OBConversion*)’: 2021-07-15T22:19:54,331 ./src/formats/vaspformat.cpp:111:33: warning: unused parameter ‘n’ [-Wunused-parameter] 2021-07-15T22:19:54,331 111 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:19:54,332 | ~~~~^ 2021-07-15T22:19:54,332 ./src/formats/vaspformat.cpp:111:50: warning: unused parameter ‘pConv’ [-Wunused-parameter] 2021-07-15T22:19:54,332 111 | virtual int SkipObjects(int n, OBConversion* pConv) 2021-07-15T22:19:54,332 | ~~~~~~~~~~~~~~^~~~~ 2021-07-15T22:19:54,375 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:19:54,376 ./src/formats/vaspformat.cpp:438:17: warning: unused variable ‘freqnum’ [-Wunused-variable] 2021-07-15T22:19:54,376 438 | int freqnum = atoi(vs[0].c_str()); 2021-07-15T22:19:54,376 | ^~~~~~~ 2021-07-15T22:19:54,405 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:19:54,405 ./src/formats/vaspformat.cpp:657:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-15T22:19:54,406 657 | for(int i = 0; i < atoms_sorted.size(); i++) 2021-07-15T22:19:54,406 | ~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:54,418 ./src/formats/vaspformat.cpp:668:34: warning: suggest braces around empty body in an ‘if’ statement [-Wempty-body] 2021-07-15T22:19:54,418 668 | if(atomicNums.size() > 0); 2021-07-15T22:19:54,419 | ^ 2021-07-15T22:19:54,419 ./src/formats/vaspformat.cpp:668:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-15T22:19:54,419 668 | if(atomicNums.size() > 0); 2021-07-15T22:19:54,419 | ^~ 2021-07-15T22:19:54,419 ./src/formats/vaspformat.cpp:669:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-15T22:19:54,419 669 | atomicNums.rbegin()->second++; 2021-07-15T22:19:54,419 | ^~~~~~~~~~ 2021-07-15T22:19:58,298 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:19:58,298 from include/openbabel/mol.h:35, 2021-07-15T22:19:58,298 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:19:58,298 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:19:58,298 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::matrix3x3&}; _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator]’: 2021-07-15T22:19:58,298 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:19:58,298 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:19:58,299 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:19:58,508 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-15T22:19:58,509 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:19:58,556 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:19:58,556 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:19:59,934 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:19:59,935 ./src/formats/vaspformat.cpp:397:21: warning: ‘fermi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:19:59,935 397 | dos->SetData(fermi, energies, densities, integration); 2021-07-15T22:19:59,935 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,000 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:20:00,000 from include/openbabel/mol.h:35, 2021-07-15T22:20:00,001 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:00,001 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:20:00,001 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,001 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,001 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,001 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,002 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,002 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,002 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,002 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,004 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,004 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,005 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,005 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,005 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,005 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,006 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,006 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,006 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,008 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,008 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,009 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:00,011 In file included from /usr/include/c++/10/vector:67, 2021-07-15T22:20:00,011 from include/openbabel/mol.h:35, 2021-07-15T22:20:00,011 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:00,012 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:20:00,012 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,012 1198 | _M_realloc_insert(end(), __x); 2021-07-15T22:20:00,012 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-15T22:20:00,016 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:20:00,016 from include/openbabel/mol.h:35, 2021-07-15T22:20:00,016 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:00,017 from ./src/formats/vaspformat.cpp:16: 2021-07-15T22:20:00,017 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:00,017 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:00,017 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:04,965 ./src/formats/vaspformat.cpp: In member function ‘virtual bool OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:04,965 ./src/formats/vaspformat.cpp:752:26: warning: ‘atom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:04,965 752 | if (atom->HasData("move")) { 2021-07-15T22:20:04,966 | ~~~~~~~~~~~~~^~~~~~~~ 2021-07-15T22:20:06,063 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:06,063 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o /tmp/cc6WU4QP.s 2021-07-15T22:20:06,068 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:07,240 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:07,241 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:07,241 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/vaspformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:07,245 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/viewmolformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:07,255 Using built-in specs. 2021-07-15T22:20:07,256 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:07,256 Target: arm-linux-gnueabihf 2021-07-15T22:20:07,256 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:07,257 Thread model: posix 2021-07-15T22:20:07,257 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:07,257 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:07,257 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:07,257 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/viewmolformat.cpp -quiet -dumpbase viewmolformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccbu6mvo.s 2021-07-15T22:20:07,270 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:07,270 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:07,270 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:07,271 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:07,271 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:07,271 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:07,271 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:07,271 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:07,272 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:07,272 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:07,272 #include "..." search starts here: 2021-07-15T22:20:07,272 #include <...> search starts here: 2021-07-15T22:20:07,272 /usr/include/eigen3 2021-07-15T22:20:07,272 include 2021-07-15T22:20:07,273 /usr/include/python3.9 2021-07-15T22:20:07,273 /usr/include/c++/10 2021-07-15T22:20:07,273 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:07,273 /usr/include/c++/10/backward 2021-07-15T22:20:07,273 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:07,273 /usr/local/include 2021-07-15T22:20:07,274 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:07,274 /usr/include 2021-07-15T22:20:07,274 End of search list. 2021-07-15T22:20:07,274 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:07,274 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:07,275 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:07,289 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:08,662 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:08,662 from include/openbabel/mol.h:43, 2021-07-15T22:20:08,662 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:08,662 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:20:08,662 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:08,663 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:08,663 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:08,663 | ^ 2021-07-15T22:20:08,663 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:08,663 37 | # define UNUSED(x) x 2021-07-15T22:20:08,663 | ^ 2021-07-15T22:20:09,360 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:09,361 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:09,361 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:20:09,361 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:09,361 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:09,361 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:09,362 | ^ 2021-07-15T22:20:09,362 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:09,362 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:09,362 | ^~~~~~~~ 2021-07-15T22:20:09,364 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:09,364 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:09,365 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:09,365 | ^ 2021-07-15T22:20:09,365 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:09,365 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:09,365 | ^~~~~~~~ 2021-07-15T22:20:09,381 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:09,381 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:09,381 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:09,381 | ^ 2021-07-15T22:20:09,382 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:09,382 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:09,382 | ^~~~~~~~ 2021-07-15T22:20:09,386 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:09,386 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:09,386 from ./src/formats/viewmolformat.cpp:17: 2021-07-15T22:20:09,386 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:09,386 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:09,386 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:09,387 | ^ 2021-07-15T22:20:09,387 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:09,387 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:09,387 | ^~~~~~~~ 2021-07-15T22:20:11,977 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:11,978 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o /tmp/ccbu6mvo.s 2021-07-15T22:20:11,984 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:12,187 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:12,187 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:12,187 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/viewmolformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:12,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xedformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xedformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:12,198 Using built-in specs. 2021-07-15T22:20:12,199 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:12,199 Target: arm-linux-gnueabihf 2021-07-15T22:20:12,200 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:12,200 Thread model: posix 2021-07-15T22:20:12,200 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:12,200 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:12,201 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:12,203 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xedformat.cpp -quiet -dumpbase xedformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xedformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccc9FrAy.s 2021-07-15T22:20:12,215 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:12,215 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:12,215 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:12,217 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:12,218 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:12,218 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:12,218 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:12,218 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:12,219 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:12,219 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:12,220 #include "..." search starts here: 2021-07-15T22:20:12,220 #include <...> search starts here: 2021-07-15T22:20:12,220 /usr/include/eigen3 2021-07-15T22:20:12,220 include 2021-07-15T22:20:12,221 /usr/include/python3.9 2021-07-15T22:20:12,221 /usr/include/c++/10 2021-07-15T22:20:12,221 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:12,221 /usr/include/c++/10/backward 2021-07-15T22:20:12,222 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:12,222 /usr/local/include 2021-07-15T22:20:12,222 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:12,222 /usr/include 2021-07-15T22:20:12,223 End of search list. 2021-07-15T22:20:12,224 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:12,224 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:12,225 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:12,245 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:13,612 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:13,613 from include/openbabel/mol.h:43, 2021-07-15T22:20:13,613 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:13,613 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:20:13,613 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:13,613 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:13,613 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:13,613 | ^ 2021-07-15T22:20:13,614 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:13,614 37 | # define UNUSED(x) x 2021-07-15T22:20:13,614 | ^ 2021-07-15T22:20:14,315 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:14,315 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:14,315 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:20:14,315 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:14,316 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:14,316 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:14,316 | ^ 2021-07-15T22:20:14,316 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:14,316 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:14,316 | ^~~~~~~~ 2021-07-15T22:20:14,320 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:14,320 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:14,320 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:14,321 | ^ 2021-07-15T22:20:14,321 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:14,321 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:14,321 | ^~~~~~~~ 2021-07-15T22:20:14,338 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:14,338 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:14,338 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:14,338 | ^ 2021-07-15T22:20:14,338 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:14,339 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:14,339 | ^~~~~~~~ 2021-07-15T22:20:14,344 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:14,344 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:14,344 from ./src/formats/xedformat.cpp:17: 2021-07-15T22:20:14,344 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:14,344 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:14,344 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:14,345 | ^ 2021-07-15T22:20:14,345 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:14,345 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:14,345 | ^~~~~~~~ 2021-07-15T22:20:16,760 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:16,761 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xedformat.o /tmp/ccc9FrAy.s 2021-07-15T22:20:16,767 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:16,966 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:16,966 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:16,967 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xedformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:16,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xsfformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:16,977 Using built-in specs. 2021-07-15T22:20:16,979 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:16,979 Target: arm-linux-gnueabihf 2021-07-15T22:20:16,979 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:16,979 Thread model: posix 2021-07-15T22:20:16,980 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:16,980 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:16,981 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:16,983 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xsfformat.cpp -quiet -dumpbase xsfformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccpPqQkO.s 2021-07-15T22:20:16,994 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:16,994 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:16,995 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:16,996 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:16,996 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:16,996 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:16,997 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:16,997 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:16,997 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:16,997 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:16,998 #include "..." search starts here: 2021-07-15T22:20:16,998 #include <...> search starts here: 2021-07-15T22:20:16,998 /usr/include/eigen3 2021-07-15T22:20:16,998 include 2021-07-15T22:20:16,999 /usr/include/python3.9 2021-07-15T22:20:16,999 /usr/include/c++/10 2021-07-15T22:20:16,999 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:16,999 /usr/include/c++/10/backward 2021-07-15T22:20:17,000 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:17,000 /usr/local/include 2021-07-15T22:20:17,000 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:17,000 /usr/include 2021-07-15T22:20:17,000 End of search list. 2021-07-15T22:20:17,002 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:17,002 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:17,002 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:17,023 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:18,387 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:18,387 from include/openbabel/mol.h:43, 2021-07-15T22:20:18,387 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:18,387 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:20:18,388 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:18,388 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:18,388 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:18,388 | ^ 2021-07-15T22:20:18,388 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:18,388 37 | # define UNUSED(x) x 2021-07-15T22:20:18,388 | ^ 2021-07-15T22:20:19,089 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:19,089 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:19,089 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:20:19,089 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:19,090 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:19,090 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:19,090 | ^ 2021-07-15T22:20:19,090 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:19,090 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:19,090 | ^~~~~~~~ 2021-07-15T22:20:19,094 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:19,094 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:19,095 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:19,095 | ^ 2021-07-15T22:20:19,095 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:19,095 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:19,095 | ^~~~~~~~ 2021-07-15T22:20:19,112 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:19,112 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:19,112 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:19,113 | ^ 2021-07-15T22:20:19,113 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:19,113 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:19,113 | ^~~~~~~~ 2021-07-15T22:20:19,118 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:19,118 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:19,118 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:20:19,118 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:19,119 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:19,119 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:19,119 | ^ 2021-07-15T22:20:19,119 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:19,119 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:19,119 | ^~~~~~~~ 2021-07-15T22:20:21,423 In file included from /usr/include/c++/10/vector:72, 2021-07-15T22:20:21,423 from include/openbabel/mol.h:35, 2021-07-15T22:20:21,424 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:21,424 from ./src/formats/xsfformat.cpp:16: 2021-07-15T22:20:21,424 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator]’: 2021-07-15T22:20:21,424 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-15T22:20:21,424 426 | vector<_Tp, _Alloc>:: 2021-07-15T22:20:21,424 | ^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:21,597 /usr/include/c++/10/bits/vector.tcc: In member function ‘virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:21,598 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:21,598 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:21,598 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:21,601 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-15T22:20:21,601 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-15T22:20:21,601 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:22,052 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:22,053 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o /tmp/ccpPqQkO.s 2021-07-15T22:20:22,057 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:22,294 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:22,294 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:22,294 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xsfformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:22,296 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xtcformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:22,305 Using built-in specs. 2021-07-15T22:20:22,306 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:22,307 Target: arm-linux-gnueabihf 2021-07-15T22:20:22,307 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:22,307 Thread model: posix 2021-07-15T22:20:22,307 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:22,307 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:22,308 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:22,308 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xtcformat.cpp -quiet -dumpbase xtcformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccOp5Df3.s 2021-07-15T22:20:22,322 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:22,322 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:22,322 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:22,323 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:22,323 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:22,323 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:22,323 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:22,323 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:22,323 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:22,324 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:22,324 #include "..." search starts here: 2021-07-15T22:20:22,324 #include <...> search starts here: 2021-07-15T22:20:22,324 /usr/include/eigen3 2021-07-15T22:20:22,324 include 2021-07-15T22:20:22,325 /usr/include/python3.9 2021-07-15T22:20:22,325 /usr/include/c++/10 2021-07-15T22:20:22,325 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:22,325 /usr/include/c++/10/backward 2021-07-15T22:20:22,325 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:22,325 /usr/local/include 2021-07-15T22:20:22,326 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:22,326 /usr/include 2021-07-15T22:20:22,326 End of search list. 2021-07-15T22:20:22,326 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:22,326 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:22,326 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:22,342 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:23,806 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:23,806 from include/openbabel/mol.h:43, 2021-07-15T22:20:23,806 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:23,806 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:20:23,807 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:23,807 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:23,807 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:23,807 | ^ 2021-07-15T22:20:23,807 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:23,807 37 | # define UNUSED(x) x 2021-07-15T22:20:23,807 | ^ 2021-07-15T22:20:24,503 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:24,503 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:24,503 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:20:24,503 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:24,503 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:24,504 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:24,504 | ^ 2021-07-15T22:20:24,504 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:24,504 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:24,504 | ^~~~~~~~ 2021-07-15T22:20:24,506 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:24,507 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:24,507 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:24,507 | ^ 2021-07-15T22:20:24,507 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:24,507 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:24,507 | ^~~~~~~~ 2021-07-15T22:20:24,523 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:24,523 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:24,524 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:24,524 | ^ 2021-07-15T22:20:24,524 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:24,524 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:24,524 | ^~~~~~~~ 2021-07-15T22:20:24,528 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:24,528 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:24,528 from ./src/formats/xtcformat.cpp:21: 2021-07-15T22:20:24,528 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:24,528 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:24,529 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:24,529 | ^ 2021-07-15T22:20:24,529 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:24,529 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:24,529 | ^~~~~~~~ 2021-07-15T22:20:24,854 ./src/formats/xtcformat.cpp: In member function ‘virtual bool OpenBabel::XTCFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:24,854 ./src/formats/xtcformat.cpp:152:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,854 152 | if (natoms != mol.NumAtoms()) { 2021-07-15T22:20:24,854 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-15T22:20:24,863 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::sizeofint(int)’: 2021-07-15T22:20:24,863 ./src/formats/xtcformat.cpp:394:17: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,863 394 | while (size >= num && num_of_bits < 32) { 2021-07-15T22:20:24,864 | ~~~~~^~~~~~ 2021-07-15T22:20:24,864 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::sizeofints(int, unsigned int*)’: 2021-07-15T22:20:24,864 ./src/formats/xtcformat.cpp:434:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:20:24,864 434 | while (bytes[num_of_bytes] >= num) { 2021-07-15T22:20:24,864 | ~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-15T22:20:24,865 ./src/formats/xtcformat.cpp: In member function ‘void OpenBabel::XTCFormat::sendints(int*, int, int, unsigned int*, unsigned int*)’: 2021-07-15T22:20:24,866 ./src/formats/xtcformat.cpp:489:21: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,866 489 | if (num_of_bits >= num_of_bytes * 8) { 2021-07-15T22:20:24,866 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:24,866 ./src/formats/xtcformat.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,866 490 | for (i = 0; i < num_of_bytes; i++) { 2021-07-15T22:20:24,866 | ~~^~~~~~~~~~~~~~ 2021-07-15T22:20:24,867 ./src/formats/xtcformat.cpp:495:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,867 495 | for (i = 0; i < num_of_bytes-1; i++) { 2021-07-15T22:20:24,867 | ~~^~~~~~~~~~~~~~~~ 2021-07-15T22:20:24,867 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::receivebits(int*, int)’: 2021-07-15T22:20:24,867 ./src/formats/xtcformat.cpp:530:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-15T22:20:24,868 530 | if (lastbits < num_of_bits) { 2021-07-15T22:20:24,868 | ~~~~~~~~~^~~~~~~~~~~~~ 2021-07-15T22:20:24,875 ./src/formats/xtcformat.cpp: In member function ‘int OpenBabel::XTCFormat::xdr3dfcoord(XDR*, float*, int*, float*)’: 2021-07-15T22:20:24,875 ./src/formats/xtcformat.cpp:771:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-15T22:20:24,875 771 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2021-07-15T22:20:24,875 | ^ 2021-07-15T22:20:27,382 ./src/formats/xtcformat.cpp:977:37: warning: ‘bitsizeint[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,382 977 | thiscoord[2] = receivebits(buf, bitsizeint[2]); 2021-07-15T22:20:27,383 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:27,383 ./src/formats/xtcformat.cpp:976:37: warning: ‘bitsizeint[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,383 976 | thiscoord[1] = receivebits(buf, bitsizeint[1]); 2021-07-15T22:20:27,383 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:27,383 ./src/formats/xtcformat.cpp:975:37: warning: ‘bitsizeint[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,383 975 | thiscoord[0] = receivebits(buf, bitsizeint[0]); 2021-07-15T22:20:27,383 | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:27,383 ./src/formats/xtcformat.cpp:787:30: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,384 787 | abs(thiscoord[1] - prevcoord[1]) < larger && 2021-07-15T22:20:27,384 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:20:27,384 ./src/formats/xtcformat.cpp:788:30: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,384 788 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2021-07-15T22:20:27,384 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:20:27,384 ./src/formats/xtcformat.cpp:786:30: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-15T22:20:27,384 786 | abs(thiscoord[0] - prevcoord[0]) < larger && 2021-07-15T22:20:27,384 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2021-07-15T22:20:28,550 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:28,550 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o /tmp/ccOp5Df3.s 2021-07-15T22:20:28,556 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:28,865 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:28,865 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:28,865 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xtcformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:28,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/xyzformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:28,879 Using built-in specs. 2021-07-15T22:20:28,880 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:28,880 Target: arm-linux-gnueabihf 2021-07-15T22:20:28,880 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:28,881 Thread model: posix 2021-07-15T22:20:28,881 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:28,881 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:28,881 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:28,881 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/xyzformat.cpp -quiet -dumpbase xyzformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccNGzCZi.s 2021-07-15T22:20:28,894 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:28,895 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:28,895 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:28,895 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:28,895 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:28,896 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:28,896 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:28,896 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:28,896 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:28,896 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:28,896 #include "..." search starts here: 2021-07-15T22:20:28,897 #include <...> search starts here: 2021-07-15T22:20:28,897 /usr/include/eigen3 2021-07-15T22:20:28,897 include 2021-07-15T22:20:28,897 /usr/include/python3.9 2021-07-15T22:20:28,897 /usr/include/c++/10 2021-07-15T22:20:28,897 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:28,897 /usr/include/c++/10/backward 2021-07-15T22:20:28,898 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:28,898 /usr/local/include 2021-07-15T22:20:28,898 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:28,898 /usr/include 2021-07-15T22:20:28,899 End of search list. 2021-07-15T22:20:28,899 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:28,899 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:28,899 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:28,912 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:30,286 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:30,287 from include/openbabel/mol.h:43, 2021-07-15T22:20:30,287 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:30,287 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:20:30,287 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:30,287 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:30,288 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:30,288 | ^ 2021-07-15T22:20:30,288 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:30,288 37 | # define UNUSED(x) x 2021-07-15T22:20:30,288 | ^ 2021-07-15T22:20:30,982 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:30,982 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:30,982 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:20:30,982 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:30,982 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:30,982 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:30,983 | ^ 2021-07-15T22:20:30,983 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:30,983 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:30,983 | ^~~~~~~~ 2021-07-15T22:20:30,985 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:30,986 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:30,986 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:30,986 | ^ 2021-07-15T22:20:30,986 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:30,986 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:30,986 | ^~~~~~~~ 2021-07-15T22:20:31,002 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:31,002 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:31,002 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:31,002 | ^ 2021-07-15T22:20:31,003 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:31,003 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:31,003 | ^~~~~~~~ 2021-07-15T22:20:31,007 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:31,007 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:31,007 from ./src/formats/xyzformat.cpp:17: 2021-07-15T22:20:31,007 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:31,007 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:31,007 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:31,008 | ^ 2021-07-15T22:20:31,008 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:31,008 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:31,008 | ^~~~~~~~ 2021-07-15T22:20:31,295 ./src/formats/xyzformat.cpp: In member function ‘virtual bool OpenBabel::XYZFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:31,295 ./src/formats/xyzformat.cpp:127:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 2021-07-15T22:20:31,296 127 | if (sscanf(buffer, "%d", &natoms) == 0 || !natoms) 2021-07-15T22:20:31,296 | ~^ ~~~~~~~ 2021-07-15T22:20:31,296 | | | 2021-07-15T22:20:31,296 | | unsigned int* 2021-07-15T22:20:31,296 | int* 2021-07-15T22:20:31,296 | %d 2021-07-15T22:20:35,179 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:35,179 as -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -march=armv6 -mfloat-abi=hard -mfpu=vfp -meabi=5 -o build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o /tmp/ccNGzCZi.s 2021-07-15T22:20:35,185 GNU assembler version 2.35.2 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Raspbian) 2.35.2 2021-07-15T22:20:35,552 COMPILER_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/ 2021-07-15T22:20:35,553 LIBRARY_PATH=/usr/lib/gcc/arm-linux-gnueabihf/10/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../arm-linux-gnueabihf/:/usr/lib/gcc/arm-linux-gnueabihf/10/../../../:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ 2021-07-15T22:20:35,553 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/xyzformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:35,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/ -I/usr/include/armv7l-linux-gnu/ -I/usr/include/eigen3 -Iinclude -I/usr/include/python3.9 -c ./src/formats/yasaraformat.cpp -o build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o -std=c++14 -v -pedantic -Wall -Wextra -fPIC -O3 2021-07-15T22:20:35,564 Using built-in specs. 2021-07-15T22:20:35,565 COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc 2021-07-15T22:20:35,565 Target: arm-linux-gnueabihf 2021-07-15T22:20:35,565 Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf 2021-07-15T22:20:35,566 Thread model: posix 2021-07-15T22:20:35,566 Supported LTO compression algorithms: zlib zstd 2021-07-15T22:20:35,566 gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1) 2021-07-15T22:20:35,566 COLLECT_GCC_OPTIONS='-pthread' '-Wno-unused-result' '-Wsign-compare' '-D' 'NDEBUG' '-g' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-g' '-fwrapv' '-O2' '-g' '-ffile-prefix-map=/python3.9-3.9.2=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-I' '/usr/include/' '-I' '/usr/include/armv7l-linux-gnu/' '-I' '/usr/include/eigen3' '-I' 'include' '-I' '/usr/include/python3.9' '-c' '-o' 'build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o' '-std=c++14' '-v' '-Wpedantic' '-Wall' '-Wextra' '-fPIC' '-O3' '-mfloat-abi=hard' '-mfpu=vfp' '-mtls-dialect=gnu' '-marm' '-march=armv6+fp' 2021-07-15T22:20:35,566 /usr/lib/gcc/arm-linux-gnueabihf/10/cc1plus -quiet -v -I /usr/include/ -I /usr/include/armv7l-linux-gnu/ -I /usr/include/eigen3 -I include -I /usr/include/python3.9 -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D_REENTRANT -D NDEBUG -D _FORTIFY_SOURCE=2 ./src/formats/yasaraformat.cpp -quiet -dumpbase yasaraformat.cpp -mfloat-abi=hard -mfpu=vfp -mtls-dialect=gnu -marm -march=armv6+fp -auxbase-strip build/temp.linux-armv7l-3.9/./src/formats/yasaraformat.o -g -g -g -g -O2 -O2 -O3 -Wno-unused-result -Wsign-compare -Wformat=1 -Werror=format-security -Wformat=1 -Werror=format-security -Wdate-time -Wpedantic -Wall -Wextra -std=c++14 -version -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fwrapv -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -fPIC -o /tmp/ccRO0bNv.s 2021-07-15T22:20:35,580 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:35,580 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:35,581 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:35,581 ignoring duplicate directory "/usr/include/arm-linux-gnueabihf/c++/10" 2021-07-15T22:20:35,581 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" 2021-07-15T22:20:35,581 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/include-fixed" 2021-07-15T22:20:35,582 ignoring nonexistent directory "/usr/lib/gcc/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/include" 2021-07-15T22:20:35,582 ignoring duplicate directory "/usr/include/" 2021-07-15T22:20:35,582 as it is a non-system directory that duplicates a system directory 2021-07-15T22:20:35,582 ignoring nonexistent directory "/usr/include/armv7l-linux-gnu/" 2021-07-15T22:20:35,582 #include "..." search starts here: 2021-07-15T22:20:35,583 #include <...> search starts here: 2021-07-15T22:20:35,583 /usr/include/eigen3 2021-07-15T22:20:35,583 include 2021-07-15T22:20:35,583 /usr/include/python3.9 2021-07-15T22:20:35,583 /usr/include/c++/10 2021-07-15T22:20:35,583 /usr/include/arm-linux-gnueabihf/c++/10 2021-07-15T22:20:35,584 /usr/include/c++/10/backward 2021-07-15T22:20:35,584 /usr/lib/gcc/arm-linux-gnueabihf/10/include 2021-07-15T22:20:35,584 /usr/local/include 2021-07-15T22:20:35,584 /usr/include/arm-linux-gnueabihf 2021-07-15T22:20:35,584 /usr/include 2021-07-15T22:20:35,584 End of search list. 2021-07-15T22:20:35,585 GNU C++14 (Raspbian 10.2.1-6+rpi1) version 10.2.1 20210110 (arm-linux-gnueabihf) 2021-07-15T22:20:35,585 compiled by GNU C version 10.2.1 20210110, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.23-GMP 2021-07-15T22:20:35,585 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 2021-07-15T22:20:35,599 Compiler executable checksum: db87415434a7c3b71e7ddc297314da99 2021-07-15T22:20:36,980 In file included from include/openbabel/atom.h:33, 2021-07-15T22:20:36,980 from include/openbabel/mol.h:43, 2021-07-15T22:20:36,981 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:36,981 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:20:36,981 include/openbabel/base.h: In member function ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’: 2021-07-15T22:20:36,981 include/openbabel/base.h:287:49: warning: unused parameter ‘replaceNewlines’ [-Wunused-parameter] 2021-07-15T22:20:36,981 287 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} 2021-07-15T22:20:36,981 | ^ 2021-07-15T22:20:36,982 include/openbabel/base.h:37:20: note: in definition of macro ‘UNUSED’ 2021-07-15T22:20:36,982 37 | # define UNUSED(x) x 2021-07-15T22:20:36,982 | ^ 2021-07-15T22:20:37,679 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:37,679 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:37,679 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:20:37,679 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:37,680 include/openbabel/generic.h:862:43: warning: implicitly-declared ‘OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:37,680 862 | {return new OBVibrationData(*this);} 2021-07-15T22:20:37,680 | ^ 2021-07-15T22:20:37,680 include/openbabel/generic.h:864:23: note: because ‘OpenBabel::OBVibrationData’ has user-provided ‘OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)’ 2021-07-15T22:20:37,680 864 | OBVibrationData & operator=(const OBVibrationData &); 2021-07-15T22:20:37,680 | ^~~~~~~~ 2021-07-15T22:20:37,683 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:37,683 include/openbabel/generic.h:907:37: warning: implicitly-declared ‘OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:37,683 907 | {return new OBDOSData(*this);} 2021-07-15T22:20:37,683 | ^ 2021-07-15T22:20:37,683 include/openbabel/generic.h:909:17: note: because ‘OpenBabel::OBDOSData’ has user-provided ‘OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)’ 2021-07-15T22:20:37,684 909 | OBDOSData & operator=(const OBDOSData &); 2021-07-15T22:20:37,684 | ^~~~~~~~ 2021-07-15T22:20:37,699 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:37,700 include/openbabel/generic.h:954:41: warning: implicitly-declared ‘OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:37,700 954 | {return new OBOrbitalData(*this);} 2021-07-15T22:20:37,700 | ^ 2021-07-15T22:20:37,700 include/openbabel/generic.h:956:21: note: because ‘OpenBabel::OBOrbitalData’ has user-provided ‘OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)’ 2021-07-15T22:20:37,700 956 | OBOrbitalData & operator=(const OBOrbitalData &); 2021-07-15T22:20:37,700 | ^~~~~~~~ 2021-07-15T22:20:37,704 In file included from include/openbabel/mol.h:52, 2021-07-15T22:20:37,704 from include/openbabel/obmolecformat.h:26, 2021-07-15T22:20:37,705 from ./src/formats/yasaraformat.cpp:34: 2021-07-15T22:20:37,705 include/openbabel/generic.h: In member function ‘virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const’: 2021-07-15T22:20:37,705 include/openbabel/generic.h:1014:54: warning: implicitly-declared ‘OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)’ is deprecated [-Wdeprecated-copy] 2021-07-15T22:20:37,705 1014 | {return new OBElectronicTransitionData(*this);} 2021-07-15T22:20:37,705 | ^ 2021-07-15T22:20:37,705 include/openbabel/generic.h:1016:34: note: because ‘OpenBabel::OBElectronicTransitionData’ has user-provided ‘OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)’ 2021-07-15T22:20:37,705 1016 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); 2021-07-15T22:20:37,706 | ^~~~~~~~ 2021-07-15T22:20:37,995 ./src/formats/yasaraformat.cpp: In function ‘OpenBabel::mobatom* OpenBabel::mob_next(OpenBabel::mobatom*)’: 2021-07-15T22:20:37,996 ./src/formats/yasaraformat.cpp:39:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2021-07-15T22:20:37,996 39 | #define mem_inc(POINTER,INC) (*((char**)&(POINTER))+=(INC)) 2021-07-15T22:20:37,996 | ~^~~~~~~~~~~~~~~~~~~ 2021-07-15T22:20:37,996 ./src/formats/yasaraformat.cpp:221:3: note: in expansion of macro ‘mem_inc’ 2021-07-15T22:20:37,996 221 | { mem_inc(atom,mob_atomsize(atom)); 2021-07-15T22:20:37,996 | ^~~~~~~ 2021-07-15T22:20:38,006 ./src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:38,007 ./src/formats/yasaraformat.cpp:368:21: warning: variable ‘reslen’ set but not used [-Wunused-but-set-variable] 2021-07-15T22:20:38,007 368 | int /*samenames,*/reslen,charged; 2021-07-15T22:20:38,007 | ^~~~~~ 2021-07-15T22:20:38,008 ./src/formats/yasaraformat.cpp: In member function ‘virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: 2021-07-15T22:20:38,008 ./src/formats/yasaraformat.cpp:475:40: error: narrowing conversion of ‘-16’ from ‘int’ to ‘char’ [-Wnarrowing] 2021-07-15T22:20:38,009 475 | char double1[8]={0,0,0,0,0,0,-16,0x3f}; 2021-07-15T22:20:38,009 | ^ 2021-07-15T22:20:39,000 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-15T22:20:39,093 Building wheel for maagbel (setup.py): finished with status 'error' 2021-07-15T22:20:39,094 ERROR: Failed building wheel for maagbel 2021-07-15T22:20:39,098 Running setup.py clean for maagbel 2021-07-15T22:20:39,098 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zebkatqz/maagbel_559fe51c7c2240f99878fb0a949b5678/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-15T22:20:40,418 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'mail' 2021-07-15T22:20:40,419 warnings.warn(msg) 2021-07-15T22:20:40,541 running clean 2021-07-15T22:20:40,543 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-15T22:20:40,686 'build/lib.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-15T22:20:40,686 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-15T22:20:40,686 'build/scripts-3.9' does not exist -- can't clean it 2021-07-15T22:20:40,687 removing 'build' 2021-07-15T22:20:40,751 Failed to build maagbel 2021-07-15T22:20:40,751 ERROR: Failed to build one or more wheels 2021-07-15T22:20:40,752 Exception information: 2021-07-15T22:20:40,752 Traceback (most recent call last): 2021-07-15T22:20:40,752 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-15T22:20:40,752 status = self.run(options, args) 2021-07-15T22:20:40,752 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-15T22:20:40,752 return func(self, options, args) 2021-07-15T22:20:40,752 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-15T22:20:40,752 raise CommandError( 2021-07-15T22:20:40,752 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-15T22:20:40,756 Removed build tracker: '/tmp/pip-req-tracker-f4yn66o2'