2021-07-15T23:05:02,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-izq_xmob
2021-07-15T23:05:02,438 Created temporary directory: /tmp/pip-req-tracker-am86i4si
2021-07-15T23:05:02,438 Initialized build tracking at /tmp/pip-req-tracker-am86i4si
2021-07-15T23:05:02,438 Created build tracker: /tmp/pip-req-tracker-am86i4si
2021-07-15T23:05:02,438 Entered build tracker: /tmp/pip-req-tracker-am86i4si
2021-07-15T23:05:02,439 Created temporary directory: /tmp/pip-wheel-fh7ritx_
2021-07-15T23:05:02,465 1 location(s) to search for versions of cyvcf2:
2021-07-15T23:05:02,465 * https://pypi.org/simple/cyvcf2/
2021-07-15T23:05:02,466 Fetching project page and analyzing links: https://pypi.org/simple/cyvcf2/
2021-07-15T23:05:02,466 Getting page https://pypi.org/simple/cyvcf2/
2021-07-15T23:05:02,468 Found index url https://pypi.org/simple
2021-07-15T23:05:02,671   Found link https://files.pythonhosted.org/packages/d1/07/b59d41fc3aa2d21f8db3d31d9bac643534bbe0cdefca8da88aced413ad68/cyvcf2-0.1.0.tar.gz#sha256=39f01726d1efabb31beaef4e5137040d62740b0532f40edd3478ceec0a89b248 (from https://pypi.org/simple/cyvcf2/), version: 0.1.0
2021-07-15T23:05:02,671   Found link https://files.pythonhosted.org/packages/57/6f/3d1ca274114e9540e76455c07e86fbfeccda10fe2dd37f6e3c6a220dcba0/cyvcf2-0.1.1.tar.gz#sha256=058bce2988daf45ea504e01c8ddb3aaf7da374dd4468e106f2adf5279ef27e1b (from https://pypi.org/simple/cyvcf2/), version: 0.1.1
2021-07-15T23:05:02,672   Found link https://files.pythonhosted.org/packages/bc/6b/ca8177b9effc1ec07cd99dde61e4e38c5c9d61606d4cfe9e83859ac414ec/cyvcf2-0.1.2.tar.gz#sha256=d194e632770c301ba9386535f8948f7e9ffa534858af8f7b4b3b6a1c3648bef8 (from https://pypi.org/simple/cyvcf2/), version: 0.1.2
2021-07-15T23:05:02,672   Found link https://files.pythonhosted.org/packages/8e/c8/accc184a5363cc7a06d1839275aede48950c9a2d798bba0f8306742f4c3e/cyvcf2-0.1.3.tar.gz#sha256=c78b7edfa7fb529f8527c919730f394e166ee94a78a578af144314a3a9f25970 (from https://pypi.org/simple/cyvcf2/), version: 0.1.3
2021-07-15T23:05:02,672   Found link https://files.pythonhosted.org/packages/40/65/c1ca5e2fd8be5d973825df310f5709ef52174151ad5987fd4ba0d137bb8d/cyvcf2-0.1.4.tar.gz#sha256=e41b06d411b8ca2978fb0e4b42c4e9214b8f7c63c02bd6847b4fbe96e33c9e55 (from https://pypi.org/simple/cyvcf2/), version: 0.1.4
2021-07-15T23:05:02,673   Found link https://files.pythonhosted.org/packages/c4/4f/921d799e89e2b7cf75707eed4df46c5063911c9801d11b58a68c91425b72/cyvcf2-0.1.5.tar.gz#sha256=ea875c78a705b95f5611c2847c1ea9b7afda081a720a3e74207d9ecbf9feb012 (from https://pypi.org/simple/cyvcf2/), version: 0.1.5
2021-07-15T23:05:02,673   Found link https://files.pythonhosted.org/packages/e5/0f/859f772e646c5536fd3a71ee6144200cb4c490eb5326321699507b6c91ef/cyvcf2-0.1.6.tar.gz#sha256=e14d06e7821c55b2da9dd9ccd7dc6f97e57d8bda070a8e4621d9b0fd883bcdcb (from https://pypi.org/simple/cyvcf2/), version: 0.1.6
2021-07-15T23:05:02,673   Found link https://files.pythonhosted.org/packages/6c/97/e86516e60c558df1b54c2e27cf0a2f955816ff185200c79590e6015f6ab1/cyvcf2-0.1.7.tar.gz#sha256=a4b13b57aec0a31ff4c40e4956ecdbae5ada05b32b95fafba3d84021c70caf5b (from https://pypi.org/simple/cyvcf2/), version: 0.1.7
2021-07-15T23:05:02,673   Found link https://files.pythonhosted.org/packages/79/22/0e1470adc46976c0afdc63d220d03cc127e1a79f94d92b75e5ea55763cea/cyvcf2-0.1.8.tar.gz#sha256=840ba9ab5105eb2286d164c965ee2c2d288ebcf72ad0d1306cda5b1f6f2ab29c (from https://pypi.org/simple/cyvcf2/), version: 0.1.8
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2021-07-15T23:05:02,675   Found link https://files.pythonhosted.org/packages/ff/5e/91139637a81d6b31df9a306b8f2d83c07fe92dc8aaf55e5fd77d26257539/cyvcf2-0.2.2.tar.gz#sha256=76fb1f17d8e4d91a2cba462b69f999f2c59f34a54df25a9be48f4d0942bc534a (from https://pypi.org/simple/cyvcf2/), version: 0.2.2
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2021-07-15T23:05:02,675   Found link https://files.pythonhosted.org/packages/3a/7c/70298b7ccb4801d91998d3c590521946b6d40d44db71c33af9d02584a0f8/cyvcf2-0.2.4.tar.gz#sha256=48f1a85f837f8e993a1538b933fd8fa37625038b6f7c45f38e9c2873e79bbff6 (from https://pypi.org/simple/cyvcf2/), version: 0.2.4
2021-07-15T23:05:02,675   Found link https://files.pythonhosted.org/packages/0c/77/ab52a01f24afaffa97e3b1d6c774d5c6923e0eaadee8562636ffa2931b32/cyvcf2-0.2.5.tar.gz#sha256=9f44b95d7995242c30b6606dee1203b53b893cc19c3ab77af36e147d61796f3e (from https://pypi.org/simple/cyvcf2/), version: 0.2.5
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2021-07-15T23:05:02,676   Found link https://files.pythonhosted.org/packages/18/12/bd09382d770f6a290981bd18d62db75e18540ed5a30a0dadee5c2ca9ac7d/cyvcf2-0.2.7.tar.gz#sha256=53f8e1d4cd3cccf363b0a6756d3e2fa455f5780edf189bc594c4f5792c9cb8ed (from https://pypi.org/simple/cyvcf2/), version: 0.2.7
2021-07-15T23:05:02,676   Found link https://files.pythonhosted.org/packages/b0/85/38adbe84e488dc3ebdcdf86e5f272f800c434779db3fcb9de4c346229165/cyvcf2-0.2.8.tar.gz#sha256=023be6aae116e494a8c04fce91fcf00014e1cd11663d667d693e93f94842f182 (from https://pypi.org/simple/cyvcf2/), version: 0.2.8
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2021-07-15T23:05:02,677   Found link https://files.pythonhosted.org/packages/be/8a/91ba05cf12be401fa448775976774bd97e21ea958082914b774ea52dca8d/cyvcf2-0.4.1.tar.gz#sha256=0a70098db9d94be2be49e0c0bd059e8ada97990aa9e5ddfb4e0f934231c72070 (from https://pypi.org/simple/cyvcf2/), version: 0.4.1
2021-07-15T23:05:02,678   Found link https://files.pythonhosted.org/packages/f7/37/1cd2786c8531516d87386ab13a786f3b9a06ef505d911b98f09ae7b09fe9/cyvcf2-0.4.2.tar.gz#sha256=088ac2a964a0a4f501678064e8113793aff5200b07b9734a79b0430d6815ba3e (from https://pypi.org/simple/cyvcf2/), version: 0.4.2
2021-07-15T23:05:02,678   Found link https://files.pythonhosted.org/packages/ee/44/b828f8e650ddc658e07c215b22a0611b350581560c936be4c1513dde5e24/cyvcf2-0.5.0.tar.gz#sha256=199f361ad1c9446a401833358aaa3c9b1cb588b650649c29c1572a919166dd21 (from https://pypi.org/simple/cyvcf2/), version: 0.5.0
2021-07-15T23:05:02,678   Found link https://files.pythonhosted.org/packages/17/d8/4161752c57e6be524969fe7bfd8773a860593cb1d81828c399fc9c611152/cyvcf2-0.5.1.tar.gz#sha256=346a88d1cd28695022dc80ff39f2f753e3588265e58627d1cb2228bab2650bca (from https://pypi.org/simple/cyvcf2/), version: 0.5.1
2021-07-15T23:05:02,678   Found link https://files.pythonhosted.org/packages/f8/9c/05215397eb6076718b0349cc0c47859e32a9f51b251577241aeb4a3a396f/cyvcf2-0.5.2.tar.gz#sha256=5e1c181044dab11f20ba61c70730d3741aec7b53f4425ed707baf50c4eec5d68 (from https://pypi.org/simple/cyvcf2/), version: 0.5.2
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2021-07-15T23:05:02,679   Found link https://files.pythonhosted.org/packages/dd/12/433768e01c285407d1c294c8d3dd367ff44774b23620aa22b627ea799cc2/cyvcf2-0.5.5.tar.gz#sha256=79d75b115616bf4782cf452352e7e1d494c7ca38c452e65a80263996ced91594 (from https://pypi.org/simple/cyvcf2/), version: 0.5.5
2021-07-15T23:05:02,679   Found link https://files.pythonhosted.org/packages/fd/cb/9c261f27fe3231f02d58afd43bed010e6c211afe9b37328076fa3134eade/cyvcf2-0.6.1.tar.gz#sha256=047b0695aeb1f4f52dc4697154990e66fdad7632c9c696b937c414925a847567 (from https://pypi.org/simple/cyvcf2/), version: 0.6.1
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2021-07-15T23:05:02,685   Found link https://files.pythonhosted.org/packages/cb/4c/18e0e6237cd4e8bf926c2a294db496ea32f0fff50fb6f06d8a817e985a64/cyvcf2-0.10.0.tar.gz#sha256=3b4e7294abd7efe91fbee993e078a1db2ebab4ce38bdd2e17e50d2b2dd8f902e (from https://pypi.org/simple/cyvcf2/), version: 0.10.0
2021-07-15T23:05:02,686   Found link https://files.pythonhosted.org/packages/d8/c8/3134460616b1a73015388786cc0b33abd27827026bccf03dc1a3c6967a44/cyvcf2-0.10.1.tar.gz#sha256=977d3efc1c92c3b34eeb2abb10f1338d7e28d18e808a5ce309a54a6bda6bc1fb (from https://pypi.org/simple/cyvcf2/), version: 0.10.1
2021-07-15T23:05:02,686   Found link https://files.pythonhosted.org/packages/02/5d/e0503429bfaa7161db8b5962cf4637de7e8cbac20b8f0e7309c0239a949e/cyvcf2-0.10.3.tar.gz#sha256=827b77baf3e8ef79cb7a22be9fd0b832cf1ec3bf4876457156cdfdf488eb776d (from https://pypi.org/simple/cyvcf2/), version: 0.10.3
2021-07-15T23:05:02,686   Found link https://files.pythonhosted.org/packages/49/36/4b3c44ebdbc8c4c847cf37d29b2c87f919d6417eb60bf5e4a647227e6f97/cyvcf2-0.10.4.tar.gz#sha256=5bfabd3da4ab28e2a75b13f8ec1fc9189d322584ccc5694ea417f09bbc79666c (from https://pypi.org/simple/cyvcf2/), version: 0.10.4
2021-07-15T23:05:02,686   Found link https://files.pythonhosted.org/packages/d3/cf/5b01c77a32265c694479e5f92c68d34200f0beac4222cd2205cb8e449aa0/cyvcf2-0.10.6.tar.gz#sha256=64b9071e3dbea7807f4c435b1522138c235877fa36d9a0d366e27e7ab1d7830e (from https://pypi.org/simple/cyvcf2/), version: 0.10.6
2021-07-15T23:05:02,687   Found link https://files.pythonhosted.org/packages/1f/35/8c307cae68e5000f45a0b0c739e416c8d62c700acc28c3e06108f065303a/cyvcf2-0.10.7.tar.gz#sha256=7721b28a3f676164df45a15a2efe08e35c5905dd7cc4fe3b86920409d76682a9 (from https://pypi.org/simple/cyvcf2/), version: 0.10.7
2021-07-15T23:05:02,687   Found link https://files.pythonhosted.org/packages/63/21/2f7546d7121c001f73b73bc7941c511a4848771afdb4de300f50301ce458/cyvcf2-0.10.8.tar.gz#sha256=62d950c940977243ab5d2d6e6eabad5fb0deb12012e8e0d2611da03384f118d9 (from https://pypi.org/simple/cyvcf2/), version: 0.10.8
2021-07-15T23:05:02,687   Found link https://files.pythonhosted.org/packages/5f/56/a8e3bafc1ed98f2cd49af128b72ddc05095c47f08199e8fb3a9bafd7781a/cyvcf2-0.10.9.tar.gz#sha256=cf204815457101c359cb63c438a50f6eaf75e83e4e2468bddf24a24677dfc5da (from https://pypi.org/simple/cyvcf2/), version: 0.10.9
2021-07-15T23:05:02,687   Found link https://files.pythonhosted.org/packages/10/69/888f23e07de1364533ac666941b0e1229c7e60c1a5080b1234b849bd8b97/cyvcf2-0.10.10.tar.gz#sha256=14a469567992c218d1f1b8ab76b93ec5c1bf56c9f071cf93a3affdaabc9268e0 (from https://pypi.org/simple/cyvcf2/), version: 0.10.10
2021-07-15T23:05:02,688   Found link https://files.pythonhosted.org/packages/6c/c5/388bee52648892053ccc717062155cc6bcb1f0ea6ce7a1c5f45b1407c8e3/cyvcf2-0.11.0.tar.gz#sha256=780e6fc2b878a5a13471871b3425e8413d7f2f984ce1a8284ebbfb3926213ed0 (from https://pypi.org/simple/cyvcf2/), version: 0.11.0
2021-07-15T23:05:02,688   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/58/37/febdfa18e4afbe2a52b54f35dac94591b65744a66620396f548995a5d056/cyvcf2-0.11.1-py3.7-linux-x86_64.egg#sha256=590aa6ba7635c18a0f028d5b24dffef648235faddd382df68a3d6b31036295fa (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,688   Found link https://files.pythonhosted.org/packages/93/6e/c17ebd3d332af5baa8e076b9de7115c8447d3453a4726a5c7e716a2946b2/cyvcf2-0.11.1.tar.gz#sha256=4c206b6a75e1ee91496b3f0a79d40c5bed86c6f33c71c16ac0fcb36c7d8606cd (from https://pypi.org/simple/cyvcf2/), version: 0.11.1
2021-07-15T23:05:02,688   Found link https://files.pythonhosted.org/packages/55/65/dfb085bb7082b4b23d15403cd0a6573088eeabcd24d06559c1d2e131c861/cyvcf2-0.11.2.tar.gz#sha256=2c50a9e9606d19b97123e003e08ef63ccb3cabbd2d0d560dc2908176b46e4b2e (from https://pypi.org/simple/cyvcf2/), version: 0.11.2
2021-07-15T23:05:02,689   Found link https://files.pythonhosted.org/packages/19/f6/4c7685dfc8734076ef708c62c8f7adbdaab3aa92547bb1c64e32e427845d/cyvcf2-0.11.3.tar.gz#sha256=ed64074324503fbd886d88a4820a7d5058382926aa963d9f4a8df51ddc8ae7a7 (from https://pypi.org/simple/cyvcf2/), version: 0.11.3
2021-07-15T23:05:02,689   Found link https://files.pythonhosted.org/packages/83/15/6095aba5dde78dddc5ed6eca6f820813d7cd0bd73766501083c897c5da2c/cyvcf2-0.11.4.tar.gz#sha256=17c61840f05ae1dffc88c07cb20191125576f696e58fd6d68bc5904ffa1baddb (from https://pypi.org/simple/cyvcf2/), version: 0.11.4
2021-07-15T23:05:02,689   Found link https://files.pythonhosted.org/packages/dd/2e/2c80e524e5f98837274bad981a0b5621717283462fc0aca91823b76ab759/cyvcf2-0.11.5.tar.gz#sha256=20924e5b30e8308756575ac3ae8c28a8c717ed3c53b2adb297201428f43fae6e (from https://pypi.org/simple/cyvcf2/), version: 0.11.5
2021-07-15T23:05:02,690   Found link https://files.pythonhosted.org/packages/9a/21/e35e64f3a19ca916caae59e368da8b3c2d939c0a18c98fd7a701d86fa93a/cyvcf2-0.11.6.tar.gz#sha256=59de422bf54f8439cdd039230bf40ebed3d1284727f88e1a71e1baba0ff56d48 (from https://pypi.org/simple/cyvcf2/), version: 0.11.6
2021-07-15T23:05:02,690   Found link https://files.pythonhosted.org/packages/69/7f/2f256704fdb1f00c78e45ee937a371a4ea16e7f883bd301f3337bdad10ee/cyvcf2-0.11.7.tar.gz#sha256=a4b6229b89a0a1043684c65cbdd702c366a8800dc3591fb44c4b5a08640cbeec (from https://pypi.org/simple/cyvcf2/), version: 0.11.7
2021-07-15T23:05:02,690   Found link https://files.pythonhosted.org/packages/d5/3d/b009123050b6e9bc32a2db4e75fdb192c630d18a5d32670d24c632927a86/cyvcf2-0.20.0.tar.gz#sha256=995364e4cbd97f172bd775249eee24ca61978af153f280c788e804a7d0196601 (from https://pypi.org/simple/cyvcf2/), version: 0.20.0
2021-07-15T23:05:02,690   Found link https://files.pythonhosted.org/packages/44/2d/7dd95bb914ae0614800b44b0f5abf5babb1c4e86c45742573f1a22ee76e9/cyvcf2-0.20.1.tar.gz#sha256=235135edc79f58015755aa493e4357acbde54a4f67fa5ab8cc24c1506404bbd9 (from https://pypi.org/simple/cyvcf2/), version: 0.20.1
2021-07-15T23:05:02,691   Found link https://files.pythonhosted.org/packages/e4/17/c87816887ebc08417befb96068627157c58fa044ed9cae483009ccffcb6b/cyvcf2-0.20.3.tar.gz#sha256=0747a862cdf930830c1add1cbc7da4f356c1a4cad4565aae4e385ede0499c645 (from https://pypi.org/simple/cyvcf2/), version: 0.20.3
2021-07-15T23:05:02,691   Found link https://files.pythonhosted.org/packages/25/a4/72475683568031ee8e7dde725c0de48d7d5bd6e4fce913540b1cc79ed6fc/cyvcf2-0.20.4.tar.gz#sha256=4e44a0aec80b31af91a4a45e879815bc251ec7e980633d492b672df3101d4d0d (from https://pypi.org/simple/cyvcf2/), version: 0.20.4
2021-07-15T23:05:02,691   Found link https://files.pythonhosted.org/packages/4d/84/d11e676f2e6b9dcceb148f2e3376940b58374d30b473b10472547c8ec5e6/cyvcf2-0.20.5.tar.gz#sha256=a831781f20f2fc35173eaa1d13363fe38ea5ac3d6c004144f0b4c71afb091737 (from https://pypi.org/simple/cyvcf2/), version: 0.20.5
2021-07-15T23:05:02,691   Found link https://files.pythonhosted.org/packages/d2/ee/68925242e464b3d22398d3a14d2cc98372f74eac9df443b0e7069d0c0390/cyvcf2-0.20.6.tar.gz#sha256=3b4c2924109750df9df853df8b754e39d201db18bc2974e6e95a87baf64da561 (from https://pypi.org/simple/cyvcf2/), version: 0.20.6
2021-07-15T23:05:02,692   Found link https://files.pythonhosted.org/packages/10/82/605f1cb01e5edb0625cd23e31c0feeec8e0d39db98a3aa85d8ba564f9e21/cyvcf2-0.20.7.tar.gz#sha256=13847815cc6700f3131b27e8b082101a804772bcafe7c4252c3c70fdb3e9f4f0 (from https://pypi.org/simple/cyvcf2/), version: 0.20.7
2021-07-15T23:05:02,692   Found link https://files.pythonhosted.org/packages/4e/0f/de77b049c61646e1b06e24dedb4e4b67acfcc8f0b8183e148d7e2709a13a/cyvcf2-0.20.8.tar.gz#sha256=4cabce94a50be2ad9baeef17222a9bae0d7a9e6788aff4c21e09d84c44564d74 (from https://pypi.org/simple/cyvcf2/), version: 0.20.8
2021-07-15T23:05:02,692   Found link https://files.pythonhosted.org/packages/1f/5d/9f9e93a87cd2d8246dccb3376e3b6fd39a44d0f84b33b86983b0de282bde/cyvcf2-0.20.9.tar.gz#sha256=e05d4e970d9048b1b779054c33970a908bd4c639e8b681e0a93ef443fdb95b28 (from https://pypi.org/simple/cyvcf2/), version: 0.20.9
2021-07-15T23:05:02,692   Found link https://files.pythonhosted.org/packages/df/23/733165d41604b6de0233fa56e7eb946432db42186359e0d82f584208931a/cyvcf2-0.30.1.tar.gz#sha256=c9e9ebfd425ebdda16c2f2004611fb80bf2cb2b7224f2505e6de8d212da073a1 (from https://pypi.org/simple/cyvcf2/), version: 0.30.1
2021-07-15T23:05:02,710   Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0a/77/255b67a45cc5be6b905abf0db25ff87a86dd306ec5b53603ac74cdc73a95/cyvcf2-0.30.4-cp35-cp35m-macosx_10_9_x86_64.whl#sha256=3188f4b0ae1ac8878541848d7700bcb4047db9dec803ad7bc4499a75753e2351 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,710   Skipping link: none of the wheel's tags (cp35-cp35m-manylinux2014_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d0/8a/14578d9e51d072100f04438c3d71017468e249ce2a9b669ff4c54505e8d7/cyvcf2-0.30.4-cp35-cp35m-manylinux2014_x86_64.whl#sha256=7abb92bfb46323136538496770bcf884a0c214e04f61cd474c1f0b99dfedfbcd (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,711   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/37/88/de3a5253d673950fe38ceef11178bdceacf94ace4969e95419d6252b0d76/cyvcf2-0.30.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=9a83ee065603430d6ef3761b97b646c18e65119d897741418c5ded2398d02cf8 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,711   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2014_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/e3/91/b0a2d168d7c4bee1e680c0052ff0bb80c106b5d7f85745c47e6967854b70/cyvcf2-0.30.4-cp36-cp36m-manylinux2014_x86_64.whl#sha256=36e0e2aa5374a6d68a63833eabd77d4d7a0ea6ec24dec7dbff63e7510241ab5f (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,712   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/04/34/2606ae509e361929375ffff892353064ceccb4c10569a01f28a8985805b8/cyvcf2-0.30.4-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=4185a38bcb02ef371995a8a30c0fe659a9a7cf713b958b483eae11831746dc69 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,712   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2014_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ab/5e/14576bfddc8d3ee5083d281f89f741f72975b35983eed8e4ddeac900f9ad/cyvcf2-0.30.4-cp37-cp37m-manylinux2014_x86_64.whl#sha256=b6b55965d9b2be707d41fb2a5f49dbd75b01712621a2f200bcdb5ac25d68a7c3 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,713   Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d0/36/1f0183af88e2cf1aa2a1744a30bd06eb12deed6da8c0c05e5322c2b3b4c5/cyvcf2-0.30.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=f6c4b7905f2f3c1d618122b94b8c2437e81106a2bf6f3677e5e211bb9fd122db (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,713   Skipping link: none of the wheel's tags (cp38-cp38-manylinux2014_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/61/aa/a51b16c716394180ac7b73980976e07444a107d039a1a666c01c4b16195a/cyvcf2-0.30.4-cp38-cp38-manylinux2014_x86_64.whl#sha256=3f8324b9aa78a5fac47e61b7670206d2df079a2f9dade54ccd2b8d8a4a0a59d4 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,714   Skipping link: none of the wheel's tags (cp39-cp39-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ee/37/499e48500bee6e96a2f9d67242d09e7e6a684defb011125548daf24558bc/cyvcf2-0.30.4-cp39-cp39-macosx_10_9_x86_64.whl#sha256=40c567096aa6393796df2aa7afa5d23cace5a718f26902563a5a28982125abce (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,714   Skipping link: none of the wheel's tags (cp39-cp39-manylinux2014_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0d/f1/ec51368cfb9898c8cd30a29dbabb9585f22957280545561bd1e4bdbc1613/cyvcf2-0.30.4-cp39-cp39-manylinux2014_x86_64.whl#sha256=2a9c950e4e8370b0d8914ebd508fff15fc1ca2ea1b21d2cd787ba967d91615c4 (from https://pypi.org/simple/cyvcf2/)
2021-07-15T23:05:02,714   Found link https://files.pythonhosted.org/packages/63/2b/4313b604598a32075a649a45c3cbaff3c0136f49eb1c4da8dc45cd5b957c/cyvcf2-0.30.4.tar.gz#sha256=5088c1df2f1569392395c2e4c93e749149cd18e8e914257077581ee2fdb226a8 (from https://pypi.org/simple/cyvcf2/), version: 0.30.4
2021-07-15T23:05:02,715 Skipping link: not a file: https://pypi.org/simple/cyvcf2/
2021-07-15T23:05:02,727 Given no hashes to check 1 links for project 'cyvcf2': discarding no candidates
2021-07-15T23:05:02,746 Collecting cyvcf2==0.20.0
2021-07-15T23:05:02,748   Created temporary directory: /tmp/pip-unpack-j_zwnxo9
2021-07-15T23:05:03,467   Downloading cyvcf2-0.20.0.tar.gz (1.2 MB)
2021-07-15T23:05:04,338   Added cyvcf2==0.20.0 from https://files.pythonhosted.org/packages/d5/3d/b009123050b6e9bc32a2db4e75fdb192c630d18a5d32670d24c632927a86/cyvcf2-0.20.0.tar.gz#sha256=995364e4cbd97f172bd775249eee24ca61978af153f280c788e804a7d0196601 to build tracker '/tmp/pip-req-tracker-am86i4si'
2021-07-15T23:05:04,339     Running setup.py (path:/tmp/pip-wheel-fh7ritx_/cyvcf2_d6bda708e05946c5a83711eaf670dd6a/setup.py) egg_info for package cyvcf2
2021-07-15T23:05:04,339     Created temporary directory: /tmp/pip-pip-egg-info-60ool_96
2021-07-15T23:05:04,340     Running command python setup.py egg_info
2021-07-15T23:05:06,042     running egg_info
2021-07-15T23:05:06,047     creating /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info
2021-07-15T23:05:06,049     writing /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/PKG-INFO
2021-07-15T23:05:06,052     writing dependency_links to /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/dependency_links.txt
2021-07-15T23:05:06,054     writing entry points to /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/entry_points.txt
2021-07-15T23:05:06,056     writing requirements to /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/requires.txt
2021-07-15T23:05:06,057     writing top-level names to /tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/top_level.txt
2021-07-15T23:05:06,059     writing manifest file '/tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/SOURCES.txt'
2021-07-15T23:05:06,458     reading manifest file '/tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/SOURCES.txt'
2021-07-15T23:05:06,461     reading manifest template 'MANIFEST.in'
2021-07-15T23:05:06,473     adding license file 'LICENSE'
2021-07-15T23:05:06,481     writing manifest file '/tmp/pip-pip-egg-info-60ool_96/cyvcf2.egg-info/SOURCES.txt'
2021-07-15T23:05:06,600   Source in /tmp/pip-wheel-fh7ritx_/cyvcf2_d6bda708e05946c5a83711eaf670dd6a has version 0.20.0, which satisfies requirement cyvcf2==0.20.0 from https://files.pythonhosted.org/packages/d5/3d/b009123050b6e9bc32a2db4e75fdb192c630d18a5d32670d24c632927a86/cyvcf2-0.20.0.tar.gz#sha256=995364e4cbd97f172bd775249eee24ca61978af153f280c788e804a7d0196601
2021-07-15T23:05:06,601   Removed cyvcf2==0.20.0 from https://files.pythonhosted.org/packages/d5/3d/b009123050b6e9bc32a2db4e75fdb192c630d18a5d32670d24c632927a86/cyvcf2-0.20.0.tar.gz#sha256=995364e4cbd97f172bd775249eee24ca61978af153f280c788e804a7d0196601 from build tracker '/tmp/pip-req-tracker-am86i4si'
2021-07-15T23:05:06,605 Created temporary directory: /tmp/pip-unpack-dl7ny6fw
2021-07-15T23:05:06,606 Building wheels for collected packages: cyvcf2
2021-07-15T23:05:06,610   Created temporary directory: /tmp/pip-wheel-ob0gtvxd
2021-07-15T23:05:06,610   Building wheel for cyvcf2 (setup.py): started
2021-07-15T23:05:06,610   Destination directory: /tmp/pip-wheel-ob0gtvxd
2021-07-15T23:05:06,610   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fh7ritx_/cyvcf2_d6bda708e05946c5a83711eaf670dd6a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fh7ritx_/cyvcf2_d6bda708e05946c5a83711eaf670dd6a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ob0gtvxd
2021-07-15T23:05:08,067   running bdist_wheel
2021-07-15T23:05:08,270   running build
2021-07-15T23:05:08,270   running build_py
2021-07-15T23:05:08,426   creating build
2021-07-15T23:05:08,426   creating build/lib.linux-armv7l-3.9
2021-07-15T23:05:08,426   creating build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,428   copying cyvcf2/cli.py -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,430   copying cyvcf2/__main__.py -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,431   copying cyvcf2/__init__.py -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,434   creating build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,434   copying cyvcf2/tests/test_reader.py -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,437   copying cyvcf2/tests/test_cli.py -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,439   copying cyvcf2/tests/test_hemi.py -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,440   copying cyvcf2/tests/__init__.py -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,442   running egg_info
2021-07-15T23:05:08,455   writing cyvcf2.egg-info/PKG-INFO
2021-07-15T23:05:08,457   writing dependency_links to cyvcf2.egg-info/dependency_links.txt
2021-07-15T23:05:08,458   writing entry points to cyvcf2.egg-info/entry_points.txt
2021-07-15T23:05:08,459   writing requirements to cyvcf2.egg-info/requires.txt
2021-07-15T23:05:08,460   writing top-level names to cyvcf2.egg-info/top_level.txt
2021-07-15T23:05:08,497   reading manifest file 'cyvcf2.egg-info/SOURCES.txt'
2021-07-15T23:05:08,502   reading manifest template 'MANIFEST.in'
2021-07-15T23:05:08,513   adding license file 'LICENSE'
2021-07-15T23:05:08,522   writing manifest file 'cyvcf2.egg-info/SOURCES.txt'
2021-07-15T23:05:08,528   copying cyvcf2/cyvcf2.c -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,589   copying cyvcf2/cyvcf2.pxd -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,591   copying cyvcf2/cyvcf2.pyx -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,596   copying cyvcf2/helpers.c -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,598   copying cyvcf2/helpers.h -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,600   copying cyvcf2/relatedness.h -> build/lib.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,602   copying cyvcf2/tests/bug.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,604   copying cyvcf2/tests/decomposed.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,606   copying cyvcf2/tests/empty.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,608   copying cyvcf2/tests/issue_44.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,610   copying cyvcf2/tests/no-seq-len.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,612   copying cyvcf2/tests/no-seq-names.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,614   copying cyvcf2/tests/o.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,617   copying cyvcf2/tests/seg.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,619   copying cyvcf2/tests/test-alt-repr.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,622   copying cyvcf2/tests/test-diff.csi -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,624   copying cyvcf2/tests/test-format-string.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,626   copying cyvcf2/tests/test-haploidX.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,677   copying cyvcf2/tests/test-hemi.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,679   copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,681   copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,683   copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,685   copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,687   copying cyvcf2/tests/test.bug.117.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,689   copying cyvcf2/tests/test.comp_het.3.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,692   copying cyvcf2/tests/test.snpeff.bcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,694   copying cyvcf2/tests/test.snpeff.bcf.csi -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,696   copying cyvcf2/tests/test.snpeff.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,699   copying cyvcf2/tests/test.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,705   copying cyvcf2/tests/test.vcf.gz.tbi -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,707   copying cyvcf2/tests/test_gt_alt_freqs.vcf -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,710   copying cyvcf2/tests/test_gt_bases.vcf.gz -> build/lib.linux-armv7l-3.9/cyvcf2/tests
2021-07-15T23:05:08,713   running build_ext
2021-07-15T23:05:08,718   building 'cyvcf2.cyvcf2' extension
2021-07-15T23:05:08,720   creating build/temp.linux-armv7l-3.9
2021-07-15T23:05:08,720   creating build/temp.linux-armv7l-3.9/cyvcf2
2021-07-15T23:05:08,721   creating build/temp.linux-armv7l-3.9/htslib
2021-07-15T23:05:08,722   creating build/temp.linux-armv7l-3.9/htslib/cram
2021-07-15T23:05:08,724   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c cyvcf2/cyvcf2.c -o build/temp.linux-armv7l-3.9/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:05:09,137   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-15T23:05:09,137                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-15T23:05:09,137                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-15T23:05:09,137                    from cyvcf2/cyvcf2.c:601:
2021-07-15T23:05:09,138   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-15T23:05:09,138      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-15T23:05:09,138         |  ^~~~~~~
2021-07-15T23:05:09,478   cyvcf2/cyvcf2.c: In function ‘__pyx_pf_6cyvcf2_6cyvcf2_3VCF_8seqnames___get__’:
2021-07-15T23:05:09,485   cyvcf2/cyvcf2.c:13001:18: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types]
2021-07-15T23:05:09,485   13001 |   __pyx_v_cnames = bcf_hdr_seqnames(__pyx_v_self->hdr, (&__pyx_v_n));
2021-07-15T23:05:09,485         |                  ^
2021-07-15T23:05:09,494   cyvcf2/cyvcf2.c:13110:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types]
2021-07-15T23:05:09,494   13110 |       __pyx_v_cnames = bcf_index_seqnames(__pyx_v_self->hidx, __pyx_v_self->hdr, (&__pyx_v_n));
2021-07-15T23:05:09,494         |                      ^
2021-07-15T23:05:09,501   cyvcf2/cyvcf2.c:13193:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types]
2021-07-15T23:05:09,502   13193 |       __pyx_v_cnames = tbx_seqnames(__pyx_v_self->idx, (&__pyx_v_n));
2021-07-15T23:05:09,502         |                      ^
2021-07-15T23:05:11,547   cyvcf2/cyvcf2.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-15T23:05:11,579   cyvcf2/cyvcf2.c:63699:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,580   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,580         |                     ^
2021-07-15T23:05:11,580   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,580                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,580                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,580   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,580     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,580         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,619   cyvcf2/cyvcf2.c:63699:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,619   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,619         |                     ^
2021-07-15T23:05:11,620   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,620                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,620                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,620   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T23:05:11,620     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T23:05:11,620         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,658   cyvcf2/cyvcf2.c:63699:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,659   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,659         |                     ^
2021-07-15T23:05:11,659   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,659                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,659                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,659   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,659     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,659         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,698   cyvcf2/cyvcf2.c:63699:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,698   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,698         |                     ^
2021-07-15T23:05:11,698   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,698                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,698                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,698   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,699     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,699         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,737   cyvcf2/cyvcf2.c:63699:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,737   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,737         |                     ^
2021-07-15T23:05:11,737   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,737                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,737                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,737   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T23:05:11,738     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T23:05:11,738         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,776   cyvcf2/cyvcf2.c:63699:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,777   63699 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,777         |                     ^
2021-07-15T23:05:11,777   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,777                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,777                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,777   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,777     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,777         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,823   cyvcf2/cyvcf2.c:63715:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,823   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,823         |                         ^
2021-07-15T23:05:11,823   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,823                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,823                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,824   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,824     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,824         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,862   cyvcf2/cyvcf2.c:63715:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,862   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,862         |                         ^
2021-07-15T23:05:11,862   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,862                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,862                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,862   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T23:05:11,863     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T23:05:11,863         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,900   cyvcf2/cyvcf2.c:63715:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,901   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,901         |                         ^
2021-07-15T23:05:11,901   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,901                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,901                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,901   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,901     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,901         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,939   cyvcf2/cyvcf2.c:63715:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,939   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,939         |                         ^
2021-07-15T23:05:11,939   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,940                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,940                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,940   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:11,940     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:11,940         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:11,978   cyvcf2/cyvcf2.c:63715:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:11,978   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:11,978         |                         ^
2021-07-15T23:05:11,978   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:11,979                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:11,979                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:11,979   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-15T23:05:11,979     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-15T23:05:11,979         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:12,017   cyvcf2/cyvcf2.c:63715:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:12,017   63715 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-15T23:05:12,017         |                         ^
2021-07-15T23:05:12,018   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:12,018                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:12,018                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:12,018   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-15T23:05:12,018     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-15T23:05:12,018         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:12,348   cyvcf2/cyvcf2.c: In function ‘__Pyx_decode_c_bytes’:
2021-07-15T23:05:12,381   cyvcf2/cyvcf2.c:64704:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:12,381   64704 |         return PyUnicode_FromUnicode(NULL, 0);
2021-07-15T23:05:12,381         |         ^~~~~~
2021-07-15T23:05:12,381   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:12,381                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:12,381                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:12,382   /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here
2021-07-15T23:05:12,382     551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
2021-07-15T23:05:12,382         |                                          ^~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:05:13,049   cyvcf2/cyvcf2.c: In function ‘__Pyx_decode_c_string’:
2021-07-15T23:05:13,083   cyvcf2/cyvcf2.c:66557:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-15T23:05:13,083   66557 |         return PyUnicode_FromUnicode(NULL, 0);
2021-07-15T23:05:13,083         |         ^~~~~~
2021-07-15T23:05:13,083   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-15T23:05:13,084                    from /usr/include/python3.9/Python.h:97,
2021-07-15T23:05:13,084                    from cyvcf2/cyvcf2.c:4:
2021-07-15T23:05:13,084   /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here
2021-07-15T23:05:13,084     551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
2021-07-15T23:05:13,084         |                                          ^~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:06:18,826   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c cyvcf2/helpers.c -o build/temp.linux-armv7l-3.9/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:19,200   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/bcf_sr_sort.c -o build/temp.linux-armv7l-3.9/htslib/bcf_sr_sort.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:21,312   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/bgzf.c -o build/temp.linux-armv7l-3.9/htslib/bgzf.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:24,006   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_codecs.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_codecs.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:27,361   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_decode.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_decode.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:33,242   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_encode.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_encode.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:33,612   htslib/cram/cram_encode.c: In function ‘process_one_read’:
2021-07-15T23:06:33,614   htslib/cram/cram_encode.c:3045:24: warning: unused variable ‘brg’ [-Wunused-variable]
2021-07-15T23:06:33,614    3045 |         sam_hrec_rg_t *brg = sam_hrecs_find_rg(fd->header->hrecs, "UNKNOWN");
2021-07-15T23:06:33,614         |                        ^~~
2021-07-15T23:06:39,493   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_external.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_external.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:40,085   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_index.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_index.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:40,384   In file included from htslib/htslib/hts.h:36,
2021-07-15T23:06:40,384                    from htslib/hts_internal.h:29,
2021-07-15T23:06:40,384                    from htslib/cram/cram_index.c:67:
2021-07-15T23:06:40,384   htslib/cram/cram_index.c: In function ‘cram_index_container’:
2021-07-15T23:06:40,385   htslib/cram/cram_index.c:653:27: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
2021-07-15T23:06:40,385     653 |             hts_log_error("CRAM slice offset %"PRId64" does not match"
2021-07-15T23:06:40,385         |                           ^~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:06:40,385     654 |                           " landmark %d in container header (%d)",
2021-07-15T23:06:40,385     655 |                           spos - cpos - c->offset, j, c->landmark[j]);
2021-07-15T23:06:40,385         |                           ~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:06:40,386         |                                       |
2021-07-15T23:06:40,386         |                                       long unsigned int
2021-07-15T23:06:40,386   htslib/htslib/hts_log.h:78:61: note: in definition of macro ‘hts_log_error’
2021-07-15T23:06:40,386      78 | #define hts_log_error(...) hts_log(HTS_LOG_ERROR, __func__, __VA_ARGS__)
2021-07-15T23:06:40,386         |                                                             ^~~~~~~~~~~
2021-07-15T23:06:40,386   htslib/cram/cram_index.c: In function ‘cram_index_build’:
2021-07-15T23:06:40,386   htslib/cram/cram_index.c:690:17: warning: variable ‘hpos’ set but not used [-Wunused-but-set-variable]
2021-07-15T23:06:40,387     690 |     off_t cpos, hpos;
2021-07-15T23:06:40,387         |                 ^~~~
2021-07-15T23:06:41,174   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_io.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_io.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:46,070   In file included from /usr/include/string.h:495,
2021-07-15T23:06:46,070                    from htslib/cram/cram_io.c:49:
2021-07-15T23:06:46,070   In function ‘strncpy’,
2021-07-15T23:06:46,071       inlined from ‘cram_dopen’ at htslib/cram/cram_io.c:4304:9:
2021-07-15T23:06:46,071   /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 20 equals destination size [-Wstringop-truncation]
2021-07-15T23:06:46,071     106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
2021-07-15T23:06:46,071         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-15T23:06:46,867   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_samtools.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_samtools.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:47,217   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/cram_stats.c -o build/temp.linux-armv7l-3.9/htslib/cram/cram_stats.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:47,839   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/mFILE.c -o build/temp.linux-armv7l-3.9/htslib/cram/mFILE.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:48,426   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/open_trace_file.c -o build/temp.linux-armv7l-3.9/htslib/cram/open_trace_file.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:48,944   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/pooled_alloc.c -o build/temp.linux-armv7l-3.9/htslib/cram/pooled_alloc.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:49,136   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/rANS_static.c -o build/temp.linux-armv7l-3.9/htslib/cram/rANS_static.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:50,605   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/cram/string_alloc.c -o build/temp.linux-armv7l-3.9/htslib/cram/string_alloc.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:50,812   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/errmod.c -o build/temp.linux-armv7l-3.9/htslib/errmod.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:51,402   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/faidx.c -o build/temp.linux-armv7l-3.9/htslib/faidx.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:53,012   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/header.c -o build/temp.linux-armv7l-3.9/htslib/header.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:56,747   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile.c -o build/temp.linux-armv7l-3.9/htslib/hfile.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:58,049   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile_gcs.c -o build/temp.linux-armv7l-3.9/htslib/hfile_gcs.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:06:58,514   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile_libcurl.c -o build/temp.linux-armv7l-3.9/htslib/hfile_libcurl.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:00,696   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile_net.c -o build/temp.linux-armv7l-3.9/htslib/hfile_net.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:00,901   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile_s3.c -o build/temp.linux-armv7l-3.9/htslib/hfile_s3.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:03,284   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hfile_s3_write.c -o build/temp.linux-armv7l-3.9/htslib/hfile_s3_write.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:04,542   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hts.c -o build/temp.linux-armv7l-3.9/htslib/hts.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:04,868   htslib/hts.c: In function ‘hts_idx_init’:
2021-07-15T23:07:04,869   htslib/hts.c:1631:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow]
2021-07-15T23:07:04,870    1631 |     idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu;
2021-07-15T23:07:04,870         |                                                           ^~~
2021-07-15T23:07:10,884   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/hts_os.c -o build/temp.linux-armv7l-3.9/htslib/hts_os.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:11,028   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/kfunc.c -o build/temp.linux-armv7l-3.9/htslib/kfunc.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:11,459   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/knetfile.c -o build/temp.linux-armv7l-3.9/htslib/knetfile.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:12,204   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/kstring.c -o build/temp.linux-armv7l-3.9/htslib/kstring.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:12,971   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/md5.c -o build/temp.linux-armv7l-3.9/htslib/md5.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:13,555   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/multipart.c -o build/temp.linux-armv7l-3.9/htslib/multipart.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:14,090   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/probaln.c -o build/temp.linux-armv7l-3.9/htslib/probaln.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:14,776   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/realn.c -o build/temp.linux-armv7l-3.9/htslib/realn.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:15,595   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/regidx.c -o build/temp.linux-armv7l-3.9/htslib/regidx.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:16,901   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/region.c -o build/temp.linux-armv7l-3.9/htslib/region.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:17,474   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/sam.c -o build/temp.linux-armv7l-3.9/htslib/sam.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:26,585   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/synced_bcf_reader.c -o build/temp.linux-armv7l-3.9/htslib/synced_bcf_reader.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:28,658   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/tbx.c -o build/temp.linux-armv7l-3.9/htslib/tbx.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:29,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/textutils.c -o build/temp.linux-armv7l-3.9/htslib/textutils.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:30,204   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/thread_pool.c -o build/temp.linux-armv7l-3.9/htslib/thread_pool.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:30,946   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/vcf.c -o build/temp.linux-armv7l-3.9/htslib/vcf.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:41,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/vcf_sweep.c -o build/temp.linux-armv7l-3.9/htslib/vcf_sweep.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:41,463   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihtslib -Icyvcf2 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c htslib/vcfutils.c -o build/temp.linux-armv7l-3.9/htslib/vcfutils.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers
2021-07-15T23:07:43,979   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/cyvcf2/cyvcf2.o build/temp.linux-armv7l-3.9/cyvcf2/helpers.o build/temp.linux-armv7l-3.9/htslib/bcf_sr_sort.o build/temp.linux-armv7l-3.9/htslib/bgzf.o build/temp.linux-armv7l-3.9/htslib/cram/cram_codecs.o build/temp.linux-armv7l-3.9/htslib/cram/cram_decode.o build/temp.linux-armv7l-3.9/htslib/cram/cram_encode.o build/temp.linux-armv7l-3.9/htslib/cram/cram_external.o build/temp.linux-armv7l-3.9/htslib/cram/cram_index.o build/temp.linux-armv7l-3.9/htslib/cram/cram_io.o build/temp.linux-armv7l-3.9/htslib/cram/cram_samtools.o build/temp.linux-armv7l-3.9/htslib/cram/cram_stats.o build/temp.linux-armv7l-3.9/htslib/cram/mFILE.o build/temp.linux-armv7l-3.9/htslib/cram/open_trace_file.o build/temp.linux-armv7l-3.9/htslib/cram/pooled_alloc.o build/temp.linux-armv7l-3.9/htslib/cram/rANS_static.o build/temp.linux-armv7l-3.9/htslib/cram/string_alloc.o build/temp.linux-armv7l-3.9/htslib/errmod.o build/temp.linux-armv7l-3.9/htslib/faidx.o build/temp.linux-armv7l-3.9/htslib/header.o build/temp.linux-armv7l-3.9/htslib/hfile.o build/temp.linux-armv7l-3.9/htslib/hfile_gcs.o build/temp.linux-armv7l-3.9/htslib/hfile_libcurl.o build/temp.linux-armv7l-3.9/htslib/hfile_net.o build/temp.linux-armv7l-3.9/htslib/hfile_s3.o build/temp.linux-armv7l-3.9/htslib/hfile_s3_write.o build/temp.linux-armv7l-3.9/htslib/hts.o build/temp.linux-armv7l-3.9/htslib/hts_os.o build/temp.linux-armv7l-3.9/htslib/kfunc.o build/temp.linux-armv7l-3.9/htslib/knetfile.o build/temp.linux-armv7l-3.9/htslib/kstring.o build/temp.linux-armv7l-3.9/htslib/md5.o build/temp.linux-armv7l-3.9/htslib/multipart.o build/temp.linux-armv7l-3.9/htslib/probaln.o build/temp.linux-armv7l-3.9/htslib/realn.o build/temp.linux-armv7l-3.9/htslib/regidx.o build/temp.linux-armv7l-3.9/htslib/region.o build/temp.linux-armv7l-3.9/htslib/sam.o build/temp.linux-armv7l-3.9/htslib/synced_bcf_reader.o build/temp.linux-armv7l-3.9/htslib/tbx.o build/temp.linux-armv7l-3.9/htslib/textutils.o build/temp.linux-armv7l-3.9/htslib/thread_pool.o build/temp.linux-armv7l-3.9/htslib/vcf.o build/temp.linux-armv7l-3.9/htslib/vcf_sweep.o build/temp.linux-armv7l-3.9/htslib/vcfutils.o -lz -lbz2 -llzma -lcurl -lssl -lcrypt -o build/lib.linux-armv7l-3.9/cyvcf2/cyvcf2.cpython-39-arm-linux-gnueabihf.so
2021-07-15T23:07:44,684   installing to build/bdist.linux-armv7l/wheel
2021-07-15T23:07:44,684   running install
2021-07-15T23:07:44,685   running install_lib
2021-07-15T23:07:44,690   creating build/bdist.linux-armv7l
2021-07-15T23:07:44,690   creating build/bdist.linux-armv7l/wheel
2021-07-15T23:07:44,692   creating build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,694   copying build/lib.linux-armv7l-3.9/cyvcf2/cyvcf2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,844   copying build/lib.linux-armv7l-3.9/cyvcf2/cyvcf2.pxd -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,848   creating build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,848   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-format-string.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,850   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.snpeff.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,853   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test_reader.py -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,855   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test_gt_bases.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,857   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.comp_het.3.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,860   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/no-seq-len.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,861   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.bug.117.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,863   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/decomposed.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,864   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-alt-repr.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,866   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,867   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,869   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test_gt_alt_freqs.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,871   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/o.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,875   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/no-seq-names.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,876   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test_hemi.py -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,878   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,879   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,881   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,883   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-diff.csi -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,884   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/bug.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,886   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-hemi.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,889   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/issue_44.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,890   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,896   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.snpeff.bcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,898   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/seg.vcf.gz -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,899   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/empty.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,901   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,902   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test.snpeff.bcf.csi -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,904   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/test-haploidX.vcf -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,918   copying build/lib.linux-armv7l-3.9/cyvcf2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/cyvcf2/tests
2021-07-15T23:07:44,920   copying build/lib.linux-armv7l-3.9/cyvcf2/helpers.c -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,922   copying build/lib.linux-armv7l-3.9/cyvcf2/cyvcf2.c -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,988   copying build/lib.linux-armv7l-3.9/cyvcf2/cli.py -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,990   copying build/lib.linux-armv7l-3.9/cyvcf2/relatedness.h -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,992   copying build/lib.linux-armv7l-3.9/cyvcf2/cyvcf2.pyx -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,996   copying build/lib.linux-armv7l-3.9/cyvcf2/__main__.py -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,997   copying build/lib.linux-armv7l-3.9/cyvcf2/helpers.h -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:44,999   copying build/lib.linux-armv7l-3.9/cyvcf2/__init__.py -> build/bdist.linux-armv7l/wheel/cyvcf2
2021-07-15T23:07:45,000   running install_egg_info
2021-07-15T23:07:45,005   Copying cyvcf2.egg-info to build/bdist.linux-armv7l/wheel/cyvcf2-0.20.0-py3.9.egg-info
2021-07-15T23:07:45,020   running install_scripts
2021-07-15T23:07:45,100   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-15T23:07:45,105   creating build/bdist.linux-armv7l/wheel/cyvcf2-0.20.0.dist-info/WHEEL
2021-07-15T23:07:45,107   creating '/tmp/pip-wheel-ob0gtvxd/cyvcf2-0.20.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-15T23:07:45,110   adding 'cyvcf2/__init__.py'
2021-07-15T23:07:45,111   adding 'cyvcf2/__main__.py'
2021-07-15T23:07:45,112   adding 'cyvcf2/cli.py'
2021-07-15T23:07:45,319   adding 'cyvcf2/cyvcf2.c'
2021-07-15T23:07:46,878   adding 'cyvcf2/cyvcf2.cpython-39-arm-linux-gnueabihf.so'
2021-07-15T23:07:46,938   adding 'cyvcf2/cyvcf2.pxd'
2021-07-15T23:07:46,947   adding 'cyvcf2/cyvcf2.pyx'
2021-07-15T23:07:46,949   adding 'cyvcf2/helpers.c'
2021-07-15T23:07:46,951   adding 'cyvcf2/helpers.h'
2021-07-15T23:07:46,953   adding 'cyvcf2/relatedness.h'
2021-07-15T23:07:46,955   adding 'cyvcf2/tests/__init__.py'
2021-07-15T23:07:46,956   adding 'cyvcf2/tests/bug.vcf.gz'
2021-07-15T23:07:46,958   adding 'cyvcf2/tests/decomposed.vcf'
2021-07-15T23:07:46,959   adding 'cyvcf2/tests/empty.vcf'
2021-07-15T23:07:46,960   adding 'cyvcf2/tests/issue_44.vcf'
2021-07-15T23:07:46,961   adding 'cyvcf2/tests/no-seq-len.vcf'
2021-07-15T23:07:46,962   adding 'cyvcf2/tests/no-seq-names.vcf'
2021-07-15T23:07:46,967   adding 'cyvcf2/tests/o.vcf.gz'
2021-07-15T23:07:46,968   adding 'cyvcf2/tests/seg.vcf.gz'
2021-07-15T23:07:46,969   adding 'cyvcf2/tests/test-alt-repr.vcf'
2021-07-15T23:07:46,970   adding 'cyvcf2/tests/test-diff.csi'
2021-07-15T23:07:46,972   adding 'cyvcf2/tests/test-format-string.vcf'
2021-07-15T23:07:47,012   adding 'cyvcf2/tests/test-haploidX.vcf'
2021-07-15T23:07:47,019   adding 'cyvcf2/tests/test-hemi.vcf'
2021-07-15T23:07:47,020   adding 'cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz'
2021-07-15T23:07:47,021   adding 'cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi'
2021-07-15T23:07:47,022   adding 'cyvcf2/tests/test-strict-gt-option-flag.vcf.gz'
2021-07-15T23:07:47,023   adding 'cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi'
2021-07-15T23:07:47,024   adding 'cyvcf2/tests/test.bug.117.vcf'
2021-07-15T23:07:47,026   adding 'cyvcf2/tests/test.comp_het.3.vcf'
2021-07-15T23:07:47,028   adding 'cyvcf2/tests/test.snpeff.bcf'
2021-07-15T23:07:47,029   adding 'cyvcf2/tests/test.snpeff.bcf.csi'
2021-07-15T23:07:47,031   adding 'cyvcf2/tests/test.snpeff.vcf'
2021-07-15T23:07:47,050   adding 'cyvcf2/tests/test.vcf.gz'
2021-07-15T23:07:47,052   adding 'cyvcf2/tests/test.vcf.gz.tbi'
2021-07-15T23:07:47,053   adding 'cyvcf2/tests/test_cli.py'
2021-07-15T23:07:47,056   adding 'cyvcf2/tests/test_gt_alt_freqs.vcf'
2021-07-15T23:07:47,057   adding 'cyvcf2/tests/test_gt_bases.vcf.gz'
2021-07-15T23:07:47,058   adding 'cyvcf2/tests/test_hemi.py'
2021-07-15T23:07:47,062   adding 'cyvcf2/tests/test_reader.py'
2021-07-15T23:07:47,064   adding 'cyvcf2-0.20.0.dist-info/LICENSE'
2021-07-15T23:07:47,066   adding 'cyvcf2-0.20.0.dist-info/METADATA'
2021-07-15T23:07:47,067   adding 'cyvcf2-0.20.0.dist-info/WHEEL'
2021-07-15T23:07:47,067   adding 'cyvcf2-0.20.0.dist-info/entry_points.txt'
2021-07-15T23:07:47,068   adding 'cyvcf2-0.20.0.dist-info/top_level.txt'
2021-07-15T23:07:47,069   adding 'cyvcf2-0.20.0.dist-info/RECORD'
2021-07-15T23:07:47,127   removing build/bdist.linux-armv7l/wheel
2021-07-15T23:07:47,266   Building wheel for cyvcf2 (setup.py): finished with status 'done'
2021-07-15T23:07:47,314   Created wheel for cyvcf2: filename=cyvcf2-0.20.0-cp39-cp39-linux_armv7l.whl size=3595957 sha256=394bd8da39dd99aa8f40c09055ec0a1fee7ee11e62794390dfab5fd3299d4672
2021-07-15T23:07:47,314   Stored in directory: /tmp/pip-ephem-wheel-cache-izq_xmob/wheels/ae/cf/91/e78f805c1b88614a1ac25b20a3e4713b485c6d4a3c68cf85c8
2021-07-15T23:07:47,326 Successfully built cyvcf2
2021-07-15T23:07:47,469 Removed build tracker: '/tmp/pip-req-tracker-am86i4si'