2021-07-16T00:38:33,460 Created temporary directory: /tmp/pip-ephem-wheel-cache-hgw9w04y
2021-07-16T00:38:33,463 Created temporary directory: /tmp/pip-req-tracker-r2v83b8t
2021-07-16T00:38:33,463 Initialized build tracking at /tmp/pip-req-tracker-r2v83b8t
2021-07-16T00:38:33,464 Created build tracker: /tmp/pip-req-tracker-r2v83b8t
2021-07-16T00:38:33,464 Entered build tracker: /tmp/pip-req-tracker-r2v83b8t
2021-07-16T00:38:33,464 Created temporary directory: /tmp/pip-wheel-pqsg2i5d
2021-07-16T00:38:33,495 1 location(s) to search for versions of dinopy:
2021-07-16T00:38:33,495 * https://pypi.org/simple/dinopy/
2021-07-16T00:38:33,495 Fetching project page and analyzing links: https://pypi.org/simple/dinopy/
2021-07-16T00:38:33,496 Getting page https://pypi.org/simple/dinopy/
2021-07-16T00:38:33,498 Found index url https://pypi.org/simple
2021-07-16T00:38:33,676   Found link https://files.pythonhosted.org/packages/f2/68/3a8455f98893040edd9da0d033724fe16d09283c0b84bdbf8057c2221666/dinopy-1.1.1.tar.gz#sha256=8d05a5dec23065406751e95c444b5038c3d94bb1d9f7a3e151e2060ccaa73bf7 (from https://pypi.org/simple/dinopy/), version: 1.1.1
2021-07-16T00:38:33,676   Found link https://files.pythonhosted.org/packages/24/f5/1afcb87668d5d7b93b2365e1fa65a1768b243b742e7d7223acaf2a1d2403/dinopy-1.2.0.tar.gz#sha256=7d8d3dd542a5cdb04d69e5cf2156198bf78f5ba49de37f50d85c8bc3a1552fd7 (from https://pypi.org/simple/dinopy/), version: 1.2.0
2021-07-16T00:38:33,677   Found link https://files.pythonhosted.org/packages/f8/7a/b8ffa56c2f3e68ce7326269596cde7bcfd928d80d4807f683a6f6362d00a/dinopy-1.2.1.tar.gz#sha256=4473fb0d8c7a3d60af28a377e87a5a079e2a333b6054f3637213d65fd42307bf (from https://pypi.org/simple/dinopy/), version: 1.2.1
2021-07-16T00:38:33,677   Found link https://files.pythonhosted.org/packages/4b/f8/85977ab9cf64cbc4ba0b76287f81b9596951ef60b3c3e6aa2b306501b6ec/dinopy-2.0.0.tar.gz#sha256=8c5fc18a05a52dfaf39456829bc7276d508ea0df55b7feaaa4f40a4867639e71 (from https://pypi.org/simple/dinopy/), version: 2.0.0
2021-07-16T00:38:33,677   Found link https://files.pythonhosted.org/packages/b8/b8/65b5a2831143fc004fd57fcd8fbde73f0a9af1963171c074c0461830fd69/dinopy-2.0.1.tar.gz#sha256=4306f23bd2a1ceb20a1c310f7a85fc4f8765f003d7edb2a841812aa3c49c78ad (from https://pypi.org/simple/dinopy/), version: 2.0.1
2021-07-16T00:38:33,678   Found link https://files.pythonhosted.org/packages/09/8a/7a2945c6e6b780bc259724d184076d2cdde35f8175a18e32af940b2d5887/dinopy-2.0.2.tar.gz#sha256=18432e83f0c8c6a35ad7b4dab68aaa05b8139bf8358cc175ff4d5011760587e5 (from https://pypi.org/simple/dinopy/), version: 2.0.2
2021-07-16T00:38:33,678   Found link https://files.pythonhosted.org/packages/a6/19/a91e3d4a5d9312a3dfaba0ec9187db90468eb86ae1f22262391f93d19bf7/dinopy-2.0.3.tar.gz#sha256=c94fc598610bada8bc405c459ab0cd5751527cf1b03f118b73c503b04dce1501 (from https://pypi.org/simple/dinopy/), version: 2.0.3
2021-07-16T00:38:33,679   Found link https://files.pythonhosted.org/packages/9b/c4/5673afac336e4030b41c543fd7302dc6de5d048a87391b22e6d910c16482/dinopy-2.1.0.tar.gz#sha256=9d58428e0db686e15f8bd6ad1e0e64f3e8c5e82dd07fce78c0003cfa18ee5028 (from https://pypi.org/simple/dinopy/), version: 2.1.0
2021-07-16T00:38:33,679   Found link https://files.pythonhosted.org/packages/f0/ae/9192e91468e8e8a27172bcf242d01006732ec28de1616970e7f0fe05c28e/dinopy-2.2.0.tar.gz#sha256=c2b282dcb60a313201c60cb4899077e23e3d0e528dd1c55e72d18b624ad04c33 (from https://pypi.org/simple/dinopy/), version: 2.2.0
2021-07-16T00:38:33,680 Skipping link: not a file: https://pypi.org/simple/dinopy/
2021-07-16T00:38:33,700 Given no hashes to check 1 links for project 'dinopy': discarding no candidates
2021-07-16T00:38:33,720 Collecting dinopy==2.2.0
2021-07-16T00:38:33,722   Created temporary directory: /tmp/pip-unpack-hvn699p_
2021-07-16T00:38:33,910   Downloading dinopy-2.2.0.tar.gz (69 kB)
2021-07-16T00:38:34,061   Added dinopy==2.2.0 from https://files.pythonhosted.org/packages/f0/ae/9192e91468e8e8a27172bcf242d01006732ec28de1616970e7f0fe05c28e/dinopy-2.2.0.tar.gz#sha256=c2b282dcb60a313201c60cb4899077e23e3d0e528dd1c55e72d18b624ad04c33 to build tracker '/tmp/pip-req-tracker-r2v83b8t'
2021-07-16T00:38:34,063     Running setup.py (path:/tmp/pip-wheel-pqsg2i5d/dinopy_dae2a142a92e40599e1b9cc8c232b130/setup.py) egg_info for package dinopy
2021-07-16T00:38:34,063     Created temporary directory: /tmp/pip-pip-egg-info-x9opkpy5
2021-07-16T00:38:34,064     Running command python setup.py egg_info
2021-07-16T00:38:38,067     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:38:41,052     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:38:46,363     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:38:48,459     warning: dinopy/definitions.pyx:1183:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:38:52,772     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:38:57,754     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:00,208     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:05,314     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:14,718     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:34,150     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:37,521     warning: dinopy/definitions.pxd:155:6: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables
2021-07-16T00:39:45,390     Compiling dinopy/auxiliary.pyx because it changed.
2021-07-16T00:39:45,390     Compiling dinopy/conversion.pyx because it changed.
2021-07-16T00:39:45,390     Compiling dinopy/creader.pyx because it changed.
2021-07-16T00:39:45,390     Compiling dinopy/definitions.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/fasta_reader.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/fasta_writer.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/fastq_reader.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/fastq_writer.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/input_opener.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/processors.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/shape.pyx because it changed.
2021-07-16T00:39:45,391     Compiling dinopy/shaping.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/output_opener.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/nameline_parser.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/sam_reader.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/sam_writer.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/sambam.pyx because it changed.
2021-07-16T00:39:45,392     Compiling dinopy/wrap_sais.pyx because it changed.
2021-07-16T00:39:45,392     [ 1/18] Cythonizing dinopy/auxiliary.pyx
2021-07-16T00:39:45,393     [ 2/18] Cythonizing dinopy/conversion.pyx
2021-07-16T00:39:45,393     [ 3/18] Cythonizing dinopy/creader.pyx
2021-07-16T00:39:45,393     [ 4/18] Cythonizing dinopy/definitions.pyx
2021-07-16T00:39:45,393     [ 5/18] Cythonizing dinopy/fasta_reader.pyx
2021-07-16T00:39:45,393     [ 6/18] Cythonizing dinopy/fasta_writer.pyx
2021-07-16T00:39:45,393     [ 7/18] Cythonizing dinopy/fastq_reader.pyx
2021-07-16T00:39:45,393     [ 8/18] Cythonizing dinopy/fastq_writer.pyx
2021-07-16T00:39:45,393     [ 9/18] Cythonizing dinopy/input_opener.pyx
2021-07-16T00:39:45,394     [10/18] Cythonizing dinopy/nameline_parser.pyx
2021-07-16T00:39:45,394     [11/18] Cythonizing dinopy/output_opener.pyx
2021-07-16T00:39:45,394     [12/18] Cythonizing dinopy/processors.pyx
2021-07-16T00:39:45,394     [13/18] Cythonizing dinopy/sam_reader.pyx
2021-07-16T00:39:45,394     [14/18] Cythonizing dinopy/sam_writer.pyx
2021-07-16T00:39:45,394     [15/18] Cythonizing dinopy/sambam.pyx
2021-07-16T00:39:45,394     [16/18] Cythonizing dinopy/shape.pyx
2021-07-16T00:39:45,395     [17/18] Cythonizing dinopy/shaping.pyx
2021-07-16T00:39:45,395     [18/18] Cythonizing dinopy/wrap_sais.pyx
2021-07-16T00:39:45,633     running egg_info
2021-07-16T00:39:45,636     creating /tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info
2021-07-16T00:39:45,637     writing /tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/PKG-INFO
2021-07-16T00:39:45,640     writing dependency_links to /tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/dependency_links.txt
2021-07-16T00:39:45,642     writing requirements to /tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/requires.txt
2021-07-16T00:39:45,643     writing top-level names to /tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/top_level.txt
2021-07-16T00:39:45,645     writing manifest file '/tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/SOURCES.txt'
2021-07-16T00:39:46,230     reading manifest file '/tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/SOURCES.txt'
2021-07-16T00:39:46,232     reading manifest template 'MANIFEST.in'
2021-07-16T00:39:46,238     writing manifest file '/tmp/pip-pip-egg-info-x9opkpy5/dinopy.egg-info/SOURCES.txt'
2021-07-16T00:39:46,698   Source in /tmp/pip-wheel-pqsg2i5d/dinopy_dae2a142a92e40599e1b9cc8c232b130 has version 2.2.0, which satisfies requirement dinopy==2.2.0 from https://files.pythonhosted.org/packages/f0/ae/9192e91468e8e8a27172bcf242d01006732ec28de1616970e7f0fe05c28e/dinopy-2.2.0.tar.gz#sha256=c2b282dcb60a313201c60cb4899077e23e3d0e528dd1c55e72d18b624ad04c33
2021-07-16T00:39:46,699   Removed dinopy==2.2.0 from https://files.pythonhosted.org/packages/f0/ae/9192e91468e8e8a27172bcf242d01006732ec28de1616970e7f0fe05c28e/dinopy-2.2.0.tar.gz#sha256=c2b282dcb60a313201c60cb4899077e23e3d0e528dd1c55e72d18b624ad04c33 from build tracker '/tmp/pip-req-tracker-r2v83b8t'
2021-07-16T00:39:46,703 Created temporary directory: /tmp/pip-unpack-87v226kb
2021-07-16T00:39:46,704 Building wheels for collected packages: dinopy
2021-07-16T00:39:46,708   Created temporary directory: /tmp/pip-wheel-woc3h0z7
2021-07-16T00:39:46,708   Building wheel for dinopy (setup.py): started
2021-07-16T00:39:46,709   Destination directory: /tmp/pip-wheel-woc3h0z7
2021-07-16T00:39:46,709   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pqsg2i5d/dinopy_dae2a142a92e40599e1b9cc8c232b130/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pqsg2i5d/dinopy_dae2a142a92e40599e1b9cc8c232b130/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-woc3h0z7
2021-07-16T00:39:49,203   running bdist_wheel
2021-07-16T00:39:49,209   running build
2021-07-16T00:39:49,209   running build_py
2021-07-16T00:39:49,351   creating build
2021-07-16T00:39:49,351   creating build/lib.linux-armv7l-3.9
2021-07-16T00:39:49,352   creating build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,353   copying dinopy/exceptions.py -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,355   copying dinopy/fai_io.py -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,357   copying dinopy/__init__.py -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,365   copying dinopy/input_opener.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,367   copying dinopy/fasta_reader.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,370   copying dinopy/output_opener.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,373   copying dinopy/definitions.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,376   copying dinopy/wrap_sais.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,378   copying dinopy/conversion.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,381   copying dinopy/sambam.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,384   copying dinopy/nameline_parser.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,387   copying dinopy/fastq_reader.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,389   copying dinopy/sam_reader.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,392   copying dinopy/shaping.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,395   copying dinopy/creader.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,398   copying dinopy/shape.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,400   copying dinopy/sam_writer.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,403   copying dinopy/fasta_writer.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,406   copying dinopy/fastq_writer.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,408   copying dinopy/auxiliary.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,411   copying dinopy/processors.pyx -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,414   copying dinopy/input_opener.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,416   copying dinopy/__init__.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,418   copying dinopy/shaping.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,420   copying dinopy/wrap_sais.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,422   copying dinopy/auxiliary.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,424   copying dinopy/definitions.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,427   copying dinopy/sambam.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,429   copying dinopy/nameline_parser.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,431   copying dinopy/fasta_reader.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,433   copying dinopy/fastq_writer.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,435   copying dinopy/sam_reader.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,437   copying dinopy/processors.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,440   copying dinopy/shape.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,442   copying dinopy/output_opener.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,444   copying dinopy/fastq_reader.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,446   copying dinopy/conversion.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,448   copying dinopy/creader.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,450   copying dinopy/fasta_writer.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,453   copying dinopy/sam_writer.pxd -> build/lib.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,455   creating build/lib.linux-armv7l-3.9/dinopy/cpp
2021-07-16T00:39:49,456   copying dinopy/cpp/sais.cpp -> build/lib.linux-armv7l-3.9/dinopy/cpp
2021-07-16T00:39:49,458   copying dinopy/../README.rst -> build/lib.linux-armv7l-3.9/dinopy/..
2021-07-16T00:39:49,461   running build_ext
2021-07-16T00:39:49,467   building 'dinopy.auxiliary' extension
2021-07-16T00:39:49,468   creating build/temp.linux-armv7l-3.9
2021-07-16T00:39:49,468   creating build/temp.linux-armv7l-3.9/dinopy
2021-07-16T00:39:49,469   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/auxiliary.c -o build/temp.linux-armv7l-3.9/dinopy/auxiliary.o -O3
2021-07-16T00:39:49,888   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:39:49,888                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:39:49,889                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:39:49,889                    from dinopy/auxiliary.c:637:
2021-07-16T00:39:49,889   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:39:49,889      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:39:49,889         |  ^~~~~~~
2021-07-16T00:39:54,966   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/auxiliary.o -o build/lib.linux-armv7l-3.9/dinopy/auxiliary.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:39:55,110   building 'dinopy.conversion' extension
2021-07-16T00:39:55,111   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/conversion.c -o build/temp.linux-armv7l-3.9/dinopy/conversion.o -O3
2021-07-16T00:39:55,512   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:39:55,513                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:39:55,513                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:39:55,513                    from dinopy/conversion.c:637:
2021-07-16T00:39:55,513   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:39:55,513      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:39:55,513         |  ^~~~~~~
2021-07-16T00:40:10,658   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/conversion.o -o build/lib.linux-armv7l-3.9/dinopy/conversion.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:40:10,843   building 'dinopy.creader' extension
2021-07-16T00:40:10,844   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/creader.c -o build/temp.linux-armv7l-3.9/dinopy/creader.o -O3
2021-07-16T00:40:20,727   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/creader.o -o build/lib.linux-armv7l-3.9/dinopy/creader.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:40:20,915   building 'dinopy.definitions' extension
2021-07-16T00:40:20,916   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/definitions.c -o build/temp.linux-armv7l-3.9/dinopy/definitions.o -O3
2021-07-16T00:40:21,320   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:40:21,320                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:40:21,320                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:40:21,321                    from dinopy/definitions.c:637:
2021-07-16T00:40:21,321   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:40:21,321      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:40:21,321         |  ^~~~~~~
2021-07-16T00:41:00,314   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/definitions.o -o build/lib.linux-armv7l-3.9/dinopy/definitions.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:41:00,524   building 'dinopy.fasta_reader' extension
2021-07-16T00:41:00,525   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/fasta_reader.c -o build/temp.linux-armv7l-3.9/dinopy/fasta_reader.o -O3
2021-07-16T00:41:00,986   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:41:00,986                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:41:00,986                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:41:00,986                    from dinopy/fasta_reader.c:638:
2021-07-16T00:41:00,987   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:41:00,987      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:41:00,987         |  ^~~~~~~
2021-07-16T00:41:01,075   dinopy/fasta_reader.c: In function ‘__pyx_pf_6dinopy_12fasta_reader_11FastaReader___init__’:
2021-07-16T00:41:01,078   dinopy/fasta_reader.c:3638:3: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,078    3638 |   __pyx_t_8 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,078         |   ^~~~~~~~~
2021-07-16T00:41:01,079   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,079                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,080                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,080   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:41:01,080     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:41:01,080         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:01,083   dinopy/fasta_reader.c:3638:3: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,083    3638 |   __pyx_t_8 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,083         |   ^~~~~~~~~
2021-07-16T00:41:01,084   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,084                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,084                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,084   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:41:01,084     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:41:01,085         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:01,087   dinopy/fasta_reader.c:3638:3: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,087    3638 |   __pyx_t_8 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,087         |   ^~~~~~~~~
2021-07-16T00:41:01,088   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,088                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,088                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,088   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:41:01,089     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:41:01,089         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:01,098   dinopy/fasta_reader.c: In function ‘__pyx_pf_6dinopy_12fasta_reader_11FastaReader_2_read_annotation_file’:
2021-07-16T00:41:01,100   dinopy/fasta_reader.c:4034:3: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,100    4034 |   __pyx_t_1 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,100         |   ^~~~~~~~~
2021-07-16T00:41:01,100   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,101                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,101                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,101   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:41:01,101     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:41:01,102         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:01,102   dinopy/fasta_reader.c:4034:3: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,102    4034 |   __pyx_t_1 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,103         |   ^~~~~~~~~
2021-07-16T00:41:01,103   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,103                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,103                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,104   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:41:01,104     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:41:01,104         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:01,105   dinopy/fasta_reader.c:4034:3: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:41:01,105    4034 |   __pyx_t_1 = (__pyx_v_self->_fai_path != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->_fai_path) != 0);
2021-07-16T00:41:01,106         |   ^~~~~~~~~
2021-07-16T00:41:01,106   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:41:01,106                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:41:01,106                    from dinopy/fasta_reader.c:31:
2021-07-16T00:41:01,107   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:41:01,107     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:41:01,107         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:41:33,711   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/fasta_reader.o -o build/lib.linux-armv7l-3.9/dinopy/fasta_reader.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:41:33,929   building 'dinopy.fasta_writer' extension
2021-07-16T00:41:33,930   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/fasta_writer.c -o build/temp.linux-armv7l-3.9/dinopy/fasta_writer.o -O3
2021-07-16T00:41:34,387   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:41:34,387                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:41:34,387                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:41:34,387                    from dinopy/fasta_writer.c:638:
2021-07-16T00:41:34,388   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:41:34,388      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:41:34,388         |  ^~~~~~~
2021-07-16T00:41:56,094   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/fasta_writer.o -o build/lib.linux-armv7l-3.9/dinopy/fasta_writer.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:41:56,258   building 'dinopy.fastq_reader' extension
2021-07-16T00:41:56,259   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/fastq_reader.c -o build/temp.linux-armv7l-3.9/dinopy/fastq_reader.o -O3
2021-07-16T00:41:56,658   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:41:56,658                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:41:56,659                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:41:56,659                    from dinopy/fastq_reader.c:637:
2021-07-16T00:41:56,659   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:41:56,659      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:41:56,659         |  ^~~~~~~
2021-07-16T00:42:11,329   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/fastq_reader.o -o build/lib.linux-armv7l-3.9/dinopy/fastq_reader.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:42:11,489   building 'dinopy.fastq_writer' extension
2021-07-16T00:42:11,489   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/fastq_writer.c -o build/temp.linux-armv7l-3.9/dinopy/fastq_writer.o -O3
2021-07-16T00:42:11,892   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:42:11,892                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:42:11,892                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:42:11,892                    from dinopy/fastq_writer.c:638:
2021-07-16T00:42:11,892   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:42:11,892      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:42:11,893         |  ^~~~~~~
2021-07-16T00:42:22,610   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/fastq_writer.o -o build/lib.linux-armv7l-3.9/dinopy/fastq_writer.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:42:22,756   building 'dinopy.input_opener' extension
2021-07-16T00:42:22,756   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/input_opener.c -o build/temp.linux-armv7l-3.9/dinopy/input_opener.o -O3
2021-07-16T00:42:29,883   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/input_opener.o -o build/lib.linux-armv7l-3.9/dinopy/input_opener.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:42:30,013   building 'dinopy.processors' extension
2021-07-16T00:42:30,013   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/processors.c -o build/temp.linux-armv7l-3.9/dinopy/processors.o -O3
2021-07-16T00:42:30,449   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:42:30,449                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:42:30,449                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:42:30,449                    from dinopy/processors.c:638:
2021-07-16T00:42:30,450   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:42:30,450      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:42:30,450         |  ^~~~~~~
2021-07-16T00:43:43,687   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/processors.o -o build/lib.linux-armv7l-3.9/dinopy/processors.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:43:44,013   building 'dinopy.shape' extension
2021-07-16T00:43:44,014   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/shape.c -o build/temp.linux-armv7l-3.9/dinopy/shape.o -O3
2021-07-16T00:43:44,511   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:43:44,511                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:43:44,511                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:43:44,512                    from dinopy/shape.c:637:
2021-07-16T00:43:44,512   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:43:44,512      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:43:44,512         |  ^~~~~~~
2021-07-16T00:43:55,945   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/shape.o -o build/lib.linux-armv7l-3.9/dinopy/shape.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:43:56,103   building 'dinopy.shaping' extension
2021-07-16T00:43:56,103   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/shaping.c -o build/temp.linux-armv7l-3.9/dinopy/shaping.o -O3
2021-07-16T00:43:56,519   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:43:56,520                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:43:56,520                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:43:56,520                    from dinopy/shaping.c:637:
2021-07-16T00:43:56,520   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:43:56,520      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:43:56,520         |  ^~~~~~~
2021-07-16T00:43:56,614   dinopy/shaping.c: In function ‘__pyx_f_6dinopy_7shaping__apply_shape_int’:
2021-07-16T00:43:56,616   dinopy/shaping.c:4458:33: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
2021-07-16T00:43:56,617    4458 |   for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_6; __pyx_t_1+=1) {
2021-07-16T00:43:56,617         |                                 ^
2021-07-16T00:44:22,068   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/shaping.o -o build/lib.linux-armv7l-3.9/dinopy/shaping.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:44:22,285   building 'dinopy.output_opener' extension
2021-07-16T00:44:22,285   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/output_opener.c -o build/temp.linux-armv7l-3.9/dinopy/output_opener.o -O3
2021-07-16T00:44:35,104   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/output_opener.o -o build/lib.linux-armv7l-3.9/dinopy/output_opener.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:44:35,249   building 'dinopy.nameline_parser' extension
2021-07-16T00:44:35,249   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/nameline_parser.c -o build/temp.linux-armv7l-3.9/dinopy/nameline_parser.o -O3
2021-07-16T00:44:53,106   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/nameline_parser.o -o build/lib.linux-armv7l-3.9/dinopy/nameline_parser.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:44:53,278   building 'dinopy.sam_reader' extension
2021-07-16T00:44:53,278   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/sam_reader.c -o build/temp.linux-armv7l-3.9/dinopy/sam_reader.o -O3
2021-07-16T00:44:53,688   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:44:53,688                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:44:53,688                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:44:53,689                    from dinopy/sam_reader.c:638:
2021-07-16T00:44:53,689   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:44:53,689      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:44:53,689         |  ^~~~~~~
2021-07-16T00:45:06,636   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/sam_reader.o -o build/lib.linux-armv7l-3.9/dinopy/sam_reader.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:45:06,837   building 'dinopy.sam_writer' extension
2021-07-16T00:45:06,837   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/sam_writer.c -o build/temp.linux-armv7l-3.9/dinopy/sam_writer.o -O3
2021-07-16T00:45:18,174   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/sam_writer.o -o build/lib.linux-armv7l-3.9/dinopy/sam_writer.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:45:18,360   building 'dinopy.sambam' extension
2021-07-16T00:45:18,360   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c dinopy/sambam.c -o build/temp.linux-armv7l-3.9/dinopy/sambam.o -O3
2021-07-16T00:45:18,753   In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-16T00:45:18,753                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-16T00:45:18,753                    from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-16T00:45:18,753                    from dinopy/sambam.c:638:
2021-07-16T00:45:18,754   /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-16T00:45:18,754      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-16T00:45:18,754         |  ^~~~~~~
2021-07-16T00:45:18,893   dinopy/sambam.c: In function ‘__pyx_pf_6dinopy_6sambam_15AlignmentRecord_12__richcmp__’:
2021-07-16T00:45:18,896   dinopy/sambam.c:5293:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,896    5293 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,896         |     ^~~~~~~~~
2021-07-16T00:45:18,896   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,897                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,897                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,897   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,897     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,897         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,899   dinopy/sambam.c:5293:5: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,900    5293 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,900         |     ^~~~~~~~~
2021-07-16T00:45:18,900   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,900                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,900                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,901   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:18,901     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:18,901         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,903   dinopy/sambam.c:5293:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,903    5293 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,903         |     ^~~~~~~~~
2021-07-16T00:45:18,904   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,904                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,904                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,904   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,904     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,904         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,906   dinopy/sambam.c:5299:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,906    5299 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,906         |     ^~~~~~~~~
2021-07-16T00:45:18,907   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,907                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,907                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,907   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,907     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,907         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,909   dinopy/sambam.c:5299:5: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,910    5299 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,910         |     ^~~~~~~~~
2021-07-16T00:45:18,910   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,910                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,910                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,910   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:18,910     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:18,911         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,913   dinopy/sambam.c:5299:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,913    5299 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,913         |     ^~~~~~~~~
2021-07-16T00:45:18,913   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,913                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,914                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,914   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,914     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,914         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,916   dinopy/sambam.c:5337:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,916    5337 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,917         |     ^~~~~~~~~
2021-07-16T00:45:18,917   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,917                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,917                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,917   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,917     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,918         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,919   dinopy/sambam.c:5337:5: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,920    5337 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,920         |     ^~~~~~~~~
2021-07-16T00:45:18,920   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,920                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,920                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,921   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:18,921     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:18,921         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,923   dinopy/sambam.c:5337:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,923    5337 |     __pyx_t_4 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,923         |     ^~~~~~~~~
2021-07-16T00:45:18,923   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,924                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,924                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,924   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,924     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,924         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,927   dinopy/sambam.c:5375:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,927    5375 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,927         |     ^~~~~~~~~
2021-07-16T00:45:18,927   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,927                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,927                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,928   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,928     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,928         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,930   dinopy/sambam.c:5375:5: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,930    5375 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,930         |     ^~~~~~~~~
2021-07-16T00:45:18,930   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,931                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,931                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,931   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:18,931     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:18,931         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,933   dinopy/sambam.c:5375:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,933    5375 |     __pyx_t_4 = (__pyx_v_record->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_record->optional_raw) != 0);
2021-07-16T00:45:18,934         |     ^~~~~~~~~
2021-07-16T00:45:18,934   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,934                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,934                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,934   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,935     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,935         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,946   dinopy/sambam.c: In function ‘__pyx_f_6dinopy_6sambam_15AlignmentRecord_get_sam_repr’:
2021-07-16T00:45:18,949   dinopy/sambam.c:5802:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,949    5802 |     __pyx_t_5 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,949         |     ^~~~~~~~~
2021-07-16T00:45:18,949   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,950                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,950                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,950   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,950     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,950         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,952   dinopy/sambam.c:5802:5: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,953    5802 |     __pyx_t_5 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,953         |     ^~~~~~~~~
2021-07-16T00:45:18,953   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,953                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,953                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,953   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:18,954     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:18,954         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:18,956   dinopy/sambam.c:5802:5: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:18,956    5802 |     __pyx_t_5 = (__pyx_v_self->optional_raw != Py_None)&&(__Pyx_PyUnicode_IS_TRUE(__pyx_v_self->optional_raw) != 0);
2021-07-16T00:45:18,956         |     ^~~~~~~~~
2021-07-16T00:45:18,957   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:18,957                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:18,957                    from dinopy/sambam.c:31:
2021-07-16T00:45:18,957   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:18,958     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:18,958         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,031   dinopy/sambam.c: In function ‘__pyx_f_6dinopy_6sambam_tuples_from_cigar_str’:
2021-07-16T00:45:19,036   dinopy/sambam.c:9992:7: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,036    9992 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,036         |       ^~~~~~~~~~
2021-07-16T00:45:19,037   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,037                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,037                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,037   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:19,037     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:19,037         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,042   dinopy/sambam.c:9992:7: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,042    9992 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,043         |       ^~~~~~~~~~
2021-07-16T00:45:19,043   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,043                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,043                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,043   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:19,043     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:19,044         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,048   dinopy/sambam.c:9992:7: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,049    9992 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,049         |       ^~~~~~~~~~
2021-07-16T00:45:19,049   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,049                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,050                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,050   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:19,050     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:19,050         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,060   dinopy/sambam.c: In function ‘__pyx_f_6dinopy_6sambam_pysam_cigartuples_from_cigar_str’:
2021-07-16T00:45:19,065   dinopy/sambam.c:10359:7: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,066   10359 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,066         |       ^~~~~~~~~~
2021-07-16T00:45:19,066   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,066                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,066                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,066   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:19,066     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:19,067         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,072   dinopy/sambam.c:10359:7: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,072   10359 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,072         |       ^~~~~~~~~~
2021-07-16T00:45:19,072   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,072                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,073                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,073   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-16T00:45:19,073     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-16T00:45:19,073         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:19,078   dinopy/sambam.c:10359:7: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-16T00:45:19,078   10359 |       __pyx_t_12 = (__Pyx_PyUnicode_IS_TRUE(__pyx_v_count_str) != 0);
2021-07-16T00:45:19,079         |       ^~~~~~~~~~
2021-07-16T00:45:19,079   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-16T00:45:19,079                    from /usr/include/python3.9/Python.h:97,
2021-07-16T00:45:19,079                    from dinopy/sambam.c:31:
2021-07-16T00:45:19,079   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-16T00:45:19,080     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-16T00:45:19,080         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-16T00:45:40,291   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/sambam.o -o build/lib.linux-armv7l-3.9/dinopy/sambam.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:45:40,505   building 'dinopy.wrap_sais' extension
2021-07-16T00:45:40,505   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Idinopy -Idinopy/cpp/ -I/usr/include/python3.9 -c dinopy/wrap_sais.cpp -o build/temp.linux-armv7l-3.9/dinopy/wrap_sais.o -O3
2021-07-16T00:45:42,432   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/dinopy/wrap_sais.o -o build/lib.linux-armv7l-3.9/dinopy/wrap_sais.cpython-39-arm-linux-gnueabihf.so
2021-07-16T00:45:42,637   installing to build/bdist.linux-armv7l/wheel
2021-07-16T00:45:42,637   running install
2021-07-16T00:45:42,639   running install_lib
2021-07-16T00:45:42,644   creating build/bdist.linux-armv7l
2021-07-16T00:45:42,645   creating build/bdist.linux-armv7l/wheel
2021-07-16T00:45:42,648   creating build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,649   copying build/lib.linux-armv7l-3.9/dinopy/input_opener.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,651   copying build/lib.linux-armv7l-3.9/dinopy/__init__.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,653   copying build/lib.linux-armv7l-3.9/dinopy/definitions.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,687   copying build/lib.linux-armv7l-3.9/dinopy/shaping.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,690   copying build/lib.linux-armv7l-3.9/dinopy/input_opener.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,702   copying build/lib.linux-armv7l-3.9/dinopy/input_opener.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,704   copying build/lib.linux-armv7l-3.9/dinopy/sam_writer.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,720   copying build/lib.linux-armv7l-3.9/dinopy/exceptions.py -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,723   copying build/lib.linux-armv7l-3.9/dinopy/fasta_reader.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,726   copying build/lib.linux-armv7l-3.9/dinopy/conversion.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,750   copying build/lib.linux-armv7l-3.9/dinopy/fai_io.py -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,752   copying build/lib.linux-armv7l-3.9/dinopy/output_opener.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,754   copying build/lib.linux-armv7l-3.9/dinopy/wrap_sais.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,756   copying build/lib.linux-armv7l-3.9/dinopy/definitions.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,759   copying build/lib.linux-armv7l-3.9/dinopy/auxiliary.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,761   copying build/lib.linux-armv7l-3.9/dinopy/wrap_sais.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,763   copying build/lib.linux-armv7l-3.9/dinopy/auxiliary.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,772   copying build/lib.linux-armv7l-3.9/dinopy/definitions.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,774   copying build/lib.linux-armv7l-3.9/dinopy/sambam.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,776   copying build/lib.linux-armv7l-3.9/dinopy/shape.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,794   copying build/lib.linux-armv7l-3.9/dinopy/conversion.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,796   copying build/lib.linux-armv7l-3.9/dinopy/creader.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,812   copying build/lib.linux-armv7l-3.9/dinopy/nameline_parser.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,814   copying build/lib.linux-armv7l-3.9/dinopy/fasta_writer.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,837   copying build/lib.linux-armv7l-3.9/dinopy/fasta_reader.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,839   copying build/lib.linux-armv7l-3.9/dinopy/sambam.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,843   copying build/lib.linux-armv7l-3.9/dinopy/nameline_parser.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,846   copying build/lib.linux-armv7l-3.9/dinopy/fastq_reader.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,881   copying build/lib.linux-armv7l-3.9/dinopy/fastq_reader.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,884   copying build/lib.linux-armv7l-3.9/dinopy/fastq_writer.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,886   copying build/lib.linux-armv7l-3.9/dinopy/sam_reader.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,889   copying build/lib.linux-armv7l-3.9/dinopy/sam_reader.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,891   copying build/lib.linux-armv7l-3.9/dinopy/processors.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,961   creating build/bdist.linux-armv7l/wheel/dinopy/cpp
2021-07-16T00:45:42,961   copying build/lib.linux-armv7l-3.9/dinopy/cpp/sais.cpp -> build/bdist.linux-armv7l/wheel/dinopy/cpp
2021-07-16T00:45:42,964   copying build/lib.linux-armv7l-3.9/dinopy/nameline_parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,984   copying build/lib.linux-armv7l-3.9/dinopy/processors.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,986   copying build/lib.linux-armv7l-3.9/dinopy/shaping.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,989   copying build/lib.linux-armv7l-3.9/dinopy/creader.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,992   copying build/lib.linux-armv7l-3.9/dinopy/wrap_sais.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:42,996   copying build/lib.linux-armv7l-3.9/dinopy/fasta_reader.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,031   copying build/lib.linux-armv7l-3.9/dinopy/shape.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,034   copying build/lib.linux-armv7l-3.9/dinopy/fastq_writer.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,048   copying build/lib.linux-armv7l-3.9/dinopy/output_opener.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,050   copying build/lib.linux-armv7l-3.9/dinopy/shape.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,053   copying build/lib.linux-armv7l-3.9/dinopy/__init__.py -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,055   copying build/lib.linux-armv7l-3.9/dinopy/sam_writer.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,057   copying build/lib.linux-armv7l-3.9/dinopy/output_opener.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,077   copying build/lib.linux-armv7l-3.9/dinopy/sam_reader.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,096   copying build/lib.linux-armv7l-3.9/dinopy/fastq_reader.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,098   copying build/lib.linux-armv7l-3.9/dinopy/fasta_writer.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,101   copying build/lib.linux-armv7l-3.9/dinopy/conversion.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,103   copying build/lib.linux-armv7l-3.9/dinopy/creader.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,105   copying build/lib.linux-armv7l-3.9/dinopy/sambam.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,133   copying build/lib.linux-armv7l-3.9/dinopy/fastq_writer.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,136   copying build/lib.linux-armv7l-3.9/dinopy/fasta_writer.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,138   copying build/lib.linux-armv7l-3.9/dinopy/auxiliary.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,141   copying build/lib.linux-armv7l-3.9/dinopy/sam_writer.pxd -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,143   copying build/lib.linux-armv7l-3.9/dinopy/shaping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,188   copying build/lib.linux-armv7l-3.9/dinopy/processors.pyx -> build/bdist.linux-armv7l/wheel/dinopy
2021-07-16T00:45:43,192   copying build/lib.linux-armv7l-3.9/README.rst -> build/bdist.linux-armv7l/wheel
2021-07-16T00:45:43,194   running install_egg_info
2021-07-16T00:45:43,224   running egg_info
2021-07-16T00:45:43,225   writing dinopy.egg-info/PKG-INFO
2021-07-16T00:45:43,228   writing dependency_links to dinopy.egg-info/dependency_links.txt
2021-07-16T00:45:43,230   writing requirements to dinopy.egg-info/requires.txt
2021-07-16T00:45:43,231   writing top-level names to dinopy.egg-info/top_level.txt
2021-07-16T00:45:43,287   reading manifest file 'dinopy.egg-info/SOURCES.txt'
2021-07-16T00:45:43,291   reading manifest template 'MANIFEST.in'
2021-07-16T00:45:43,300   writing manifest file 'dinopy.egg-info/SOURCES.txt'
2021-07-16T00:45:43,302   Copying dinopy.egg-info to build/bdist.linux-armv7l/wheel/dinopy-2.2.0-py3.9.egg-info
2021-07-16T00:45:43,322   running install_scripts
2021-07-16T00:45:43,384   creating build/bdist.linux-armv7l/wheel/dinopy-2.2.0.dist-info/WHEEL
2021-07-16T00:45:43,387   creating '/tmp/pip-wheel-woc3h0z7/dinopy-2.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-16T00:45:43,390   adding 'README.rst'
2021-07-16T00:45:43,394   adding 'dinopy/__init__.pxd'
2021-07-16T00:45:43,395   adding 'dinopy/__init__.py'
2021-07-16T00:45:43,483   adding 'dinopy/auxiliary.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:43,487   adding 'dinopy/auxiliary.pxd'
2021-07-16T00:45:43,489   adding 'dinopy/auxiliary.pyx'
2021-07-16T00:45:43,706   adding 'dinopy/conversion.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:43,716   adding 'dinopy/conversion.pxd'
2021-07-16T00:45:43,719   adding 'dinopy/conversion.pyx'
2021-07-16T00:45:43,881   adding 'dinopy/creader.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:43,888   adding 'dinopy/creader.pxd'
2021-07-16T00:45:43,890   adding 'dinopy/creader.pyx'
2021-07-16T00:45:44,189   adding 'dinopy/definitions.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:44,204   adding 'dinopy/definitions.pxd'
2021-07-16T00:45:44,208   adding 'dinopy/definitions.pyx'
2021-07-16T00:45:44,210   adding 'dinopy/exceptions.py'
2021-07-16T00:45:44,212   adding 'dinopy/fai_io.py'
2021-07-16T00:45:44,605   adding 'dinopy/fasta_reader.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:44,621   adding 'dinopy/fasta_reader.pxd'
2021-07-16T00:45:44,624   adding 'dinopy/fasta_reader.pyx'
2021-07-16T00:45:44,867   adding 'dinopy/fasta_writer.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:44,877   adding 'dinopy/fasta_writer.pxd'
2021-07-16T00:45:44,881   adding 'dinopy/fasta_writer.pyx'
2021-07-16T00:45:45,095   adding 'dinopy/fastq_reader.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:45,104   adding 'dinopy/fastq_reader.pxd'
2021-07-16T00:45:45,107   adding 'dinopy/fastq_reader.pyx'
2021-07-16T00:45:45,253   adding 'dinopy/fastq_writer.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:45,259   adding 'dinopy/fastq_writer.pxd'
2021-07-16T00:45:45,261   adding 'dinopy/fastq_writer.pyx'
2021-07-16T00:45:45,365   adding 'dinopy/input_opener.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:45,370   adding 'dinopy/input_opener.pxd'
2021-07-16T00:45:45,372   adding 'dinopy/input_opener.pyx'
2021-07-16T00:45:45,588   adding 'dinopy/nameline_parser.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:45,598   adding 'dinopy/nameline_parser.pxd'
2021-07-16T00:45:45,601   adding 'dinopy/nameline_parser.pyx'
2021-07-16T00:45:45,759   adding 'dinopy/output_opener.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:45,766   adding 'dinopy/output_opener.pxd'
2021-07-16T00:45:45,768   adding 'dinopy/output_opener.pyx'
2021-07-16T00:45:46,315   adding 'dinopy/processors.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:46,338   adding 'dinopy/processors.pxd'
2021-07-16T00:45:46,342   adding 'dinopy/processors.pyx'
2021-07-16T00:45:46,504   adding 'dinopy/sam_reader.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:46,511   adding 'dinopy/sam_reader.pxd'
2021-07-16T00:45:46,513   adding 'dinopy/sam_reader.pyx'
2021-07-16T00:45:46,650   adding 'dinopy/sam_writer.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:46,656   adding 'dinopy/sam_writer.pxd'
2021-07-16T00:45:46,658   adding 'dinopy/sam_writer.pyx'
2021-07-16T00:45:46,889   adding 'dinopy/sambam.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:46,899   adding 'dinopy/sambam.pxd'
2021-07-16T00:45:46,902   adding 'dinopy/sambam.pyx'
2021-07-16T00:45:47,031   adding 'dinopy/shape.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:47,037   adding 'dinopy/shape.pxd'
2021-07-16T00:45:47,039   adding 'dinopy/shape.pyx'
2021-07-16T00:45:47,339   adding 'dinopy/shaping.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:47,352   adding 'dinopy/shaping.pxd'
2021-07-16T00:45:47,354   adding 'dinopy/shaping.pyx'
2021-07-16T00:45:47,369   adding 'dinopy/wrap_sais.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T00:45:47,371   adding 'dinopy/wrap_sais.pxd'
2021-07-16T00:45:47,373   adding 'dinopy/wrap_sais.pyx'
2021-07-16T00:45:47,375   adding 'dinopy/cpp/sais.cpp'
2021-07-16T00:45:47,377   adding 'dinopy-2.2.0.dist-info/METADATA'
2021-07-16T00:45:47,378   adding 'dinopy-2.2.0.dist-info/WHEEL'
2021-07-16T00:45:47,379   adding 'dinopy-2.2.0.dist-info/top_level.txt'
2021-07-16T00:45:47,380   adding 'dinopy-2.2.0.dist-info/RECORD'
2021-07-16T00:45:47,457   removing build/bdist.linux-armv7l/wheel
2021-07-16T00:45:47,648   Building wheel for dinopy (setup.py): finished with status 'done'
2021-07-16T00:45:47,724   Created wheel for dinopy: filename=dinopy-2.2.0-cp39-cp39-linux_armv7l.whl size=5866278 sha256=2edae690d15878fd3ff6610ee3847d2e2676a56b3d0d2b3b12ca829f0d31bfe5
2021-07-16T00:45:47,725   Stored in directory: /tmp/pip-ephem-wheel-cache-hgw9w04y/wheels/c3/87/ed/6ea0437c4a0d08eb37676f0a432a6a5a6ac3949d84cffaa60b
2021-07-16T00:45:47,740 Successfully built dinopy
2021-07-16T00:45:47,916 Removed build tracker: '/tmp/pip-req-tracker-r2v83b8t'