2021-07-16T00:47:16,408 Created temporary directory: /tmp/pip-ephem-wheel-cache-36t0ujun
2021-07-16T00:47:16,411 Created temporary directory: /tmp/pip-req-tracker-a50_upzh
2021-07-16T00:47:16,411 Initialized build tracking at /tmp/pip-req-tracker-a50_upzh
2021-07-16T00:47:16,411 Created build tracker: /tmp/pip-req-tracker-a50_upzh
2021-07-16T00:47:16,411 Entered build tracker: /tmp/pip-req-tracker-a50_upzh
2021-07-16T00:47:16,412 Created temporary directory: /tmp/pip-wheel-4qfya_nx
2021-07-16T00:47:16,441 1 location(s) to search for versions of pywes:
2021-07-16T00:47:16,441 * https://pypi.org/simple/pywes/
2021-07-16T00:47:16,442 Fetching project page and analyzing links: https://pypi.org/simple/pywes/
2021-07-16T00:47:16,442 Getting page https://pypi.org/simple/pywes/
2021-07-16T00:47:16,444 Found index url https://pypi.org/simple
2021-07-16T00:47:16,622   Found link https://files.pythonhosted.org/packages/d2/58/c01d292d0076c070c219d7e557d5a20f126b0362fb4420fe9832e48f6c3c/pywes-0.0.2.tar.gz#sha256=d55743580c080a6c930d3bf74b2d65a254fb60353a6dc638ee4fb81153deac46 (from https://pypi.org/simple/pywes/), version: 0.0.2
2021-07-16T00:47:16,623 Skipping link: not a file: https://pypi.org/simple/pywes/
2021-07-16T00:47:16,641 Given no hashes to check 1 links for project 'pywes': discarding no candidates
2021-07-16T00:47:16,659 Collecting pywes==0.0.2
2021-07-16T00:47:16,661   Created temporary directory: /tmp/pip-unpack-0yc4k02w
2021-07-16T00:47:18,978   Downloading pywes-0.0.2.tar.gz (9.6 MB)
2021-07-16T00:47:22,285   Added pywes==0.0.2 from https://files.pythonhosted.org/packages/d2/58/c01d292d0076c070c219d7e557d5a20f126b0362fb4420fe9832e48f6c3c/pywes-0.0.2.tar.gz#sha256=d55743580c080a6c930d3bf74b2d65a254fb60353a6dc638ee4fb81153deac46 to build tracker '/tmp/pip-req-tracker-a50_upzh'
2021-07-16T00:47:22,286     Running setup.py (path:/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py) egg_info for package pywes
2021-07-16T00:47:22,287     Created temporary directory: /tmp/pip-pip-egg-info-xrfs5_y4
2021-07-16T00:47:22,287     Running command python setup.py egg_info
2021-07-16T00:47:23,365     running egg_info
2021-07-16T00:47:23,367     creating /tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info
2021-07-16T00:47:23,368     writing /tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/PKG-INFO
2021-07-16T00:47:23,370     writing dependency_links to /tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/dependency_links.txt
2021-07-16T00:47:23,373     writing top-level names to /tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/top_level.txt
2021-07-16T00:47:23,375     writing manifest file '/tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/SOURCES.txt'
2021-07-16T00:47:23,548     reading manifest file '/tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/SOURCES.txt'
2021-07-16T00:47:23,550     reading manifest template 'MANIFEST.in'
2021-07-16T00:47:23,566     writing manifest file '/tmp/pip-pip-egg-info-xrfs5_y4/pywes.egg-info/SOURCES.txt'
2021-07-16T00:47:23,641   Source in /tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9 has version 0.0.2, which satisfies requirement pywes==0.0.2 from https://files.pythonhosted.org/packages/d2/58/c01d292d0076c070c219d7e557d5a20f126b0362fb4420fe9832e48f6c3c/pywes-0.0.2.tar.gz#sha256=d55743580c080a6c930d3bf74b2d65a254fb60353a6dc638ee4fb81153deac46
2021-07-16T00:47:23,642   Removed pywes==0.0.2 from https://files.pythonhosted.org/packages/d2/58/c01d292d0076c070c219d7e557d5a20f126b0362fb4420fe9832e48f6c3c/pywes-0.0.2.tar.gz#sha256=d55743580c080a6c930d3bf74b2d65a254fb60353a6dc638ee4fb81153deac46 from build tracker '/tmp/pip-req-tracker-a50_upzh'
2021-07-16T00:47:23,645 Created temporary directory: /tmp/pip-unpack-9aludyxc
2021-07-16T00:47:23,646 Building wheels for collected packages: pywes
2021-07-16T00:47:23,649   Created temporary directory: /tmp/pip-wheel-5_r0abem
2021-07-16T00:47:23,650   Building wheel for pywes (setup.py): started
2021-07-16T00:47:23,650   Destination directory: /tmp/pip-wheel-5_r0abem
2021-07-16T00:47:23,650   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5_r0abem
2021-07-16T00:47:24,868   running bdist_wheel
2021-07-16T00:47:25,029   running build
2021-07-16T00:47:25,029   running build_py
2021-07-16T00:47:25,171   creating build
2021-07-16T00:47:25,171   creating build/lib
2021-07-16T00:47:25,172   creating build/lib/bin
2021-07-16T00:47:25,173   copying bin/acmg_rank.py -> build/lib/bin
2021-07-16T00:47:25,175   copying bin/report.py -> build/lib/bin
2021-07-16T00:47:25,176   copying bin/__init__.py -> build/lib/bin
2021-07-16T00:47:25,177   copying bin/wes.py -> build/lib/bin
2021-07-16T00:47:25,180   copying bin/hgvs.py -> build/lib/bin
2021-07-16T00:47:25,181   copying bin/pedigree.py -> build/lib/bin
2021-07-16T00:47:25,183   copying bin/database_format.py -> build/lib/bin
2021-07-16T00:47:25,185   copying bin/annotation_filter.py -> build/lib/bin
2021-07-16T00:47:25,187   copying bin/diff.py -> build/lib/bin
2021-07-16T00:47:25,189   copying bin/trio.py -> build/lib/bin
2021-07-16T00:47:25,190   copying bin/hg38Tohg19.py -> build/lib/bin
2021-07-16T00:47:25,192   copying bin/pywes.py -> build/lib/bin
2021-07-16T00:47:25,194   copying bin/omim_match.py -> build/lib/bin
2021-07-16T00:47:25,196   copying bin/infer_gender.py -> build/lib/bin
2021-07-16T00:47:25,197   copying bin/vcf_split.py -> build/lib/bin
2021-07-16T00:47:25,199   running egg_info
2021-07-16T00:47:25,216   writing pywes.egg-info/PKG-INFO
2021-07-16T00:47:25,218   writing dependency_links to pywes.egg-info/dependency_links.txt
2021-07-16T00:47:25,220   writing top-level names to pywes.egg-info/top_level.txt
2021-07-16T00:47:25,254   reading manifest file 'pywes.egg-info/SOURCES.txt'
2021-07-16T00:47:25,257   reading manifest template 'MANIFEST.in'
2021-07-16T00:47:25,271   writing manifest file 'pywes.egg-info/SOURCES.txt'
2021-07-16T00:47:25,274   copying bin/.DS_Store -> build/lib/bin
2021-07-16T00:47:25,277   running build_scripts
2021-07-16T00:47:25,278   creating build/scripts-3.9
2021-07-16T00:47:25,278   copying and adjusting bin/acmg_rank.py -> build/scripts-3.9
2021-07-16T00:47:25,280   copying and adjusting bin/report.py -> build/scripts-3.9
2021-07-16T00:47:25,281   Traceback (most recent call last):
2021-07-16T00:47:25,282     File "/usr/lib/python3.9/tokenize.py", line 330, in find_cookie
2021-07-16T00:47:25,290       line_string = line.decode('utf-8')
2021-07-16T00:47:25,290   UnicodeDecodeError: 'utf-8' codec can't decode byte 0x80 in position 3131: invalid start byte

2021-07-16T00:47:25,291   During handling of the above exception, another exception occurred:

2021-07-16T00:47:25,291   Traceback (most recent call last):
2021-07-16T00:47:25,291     File "<string>", line 1, in <module>
2021-07-16T00:47:25,292     File "/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py", line 13, in <module>
2021-07-16T00:47:25,292       setup(name='pywes',version='0.0.2',description='carrier and trio analysis',long_description=long_description, url='https://github.com/N-damo/exomreport',
2021-07-16T00:47:25,292     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-07-16T00:47:25,292       return distutils.core.setup(**attrs)
2021-07-16T00:47:25,293     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-07-16T00:47:25,293       dist.run_commands()
2021-07-16T00:47:25,293     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-07-16T00:47:25,293       self.run_command(cmd)
2021-07-16T00:47:25,294     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-16T00:47:25,295       cmd_obj.run()
2021-07-16T00:47:25,295     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
2021-07-16T00:47:25,295       self.run_command('build')
2021-07-16T00:47:25,296     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-16T00:47:25,296       self.distribution.run_command(command)
2021-07-16T00:47:25,296     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-16T00:47:25,297       cmd_obj.run()
2021-07-16T00:47:25,298     File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run
2021-07-16T00:47:25,298       self.run_command(cmd_name)
2021-07-16T00:47:25,298     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-16T00:47:25,299       self.distribution.run_command(command)
2021-07-16T00:47:25,299     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-16T00:47:25,300       cmd_obj.run()
2021-07-16T00:47:25,300     File "/usr/lib/python3.9/distutils/command/build_scripts.py", line 50, in run
2021-07-16T00:47:25,307       self.copy_scripts()
2021-07-16T00:47:25,307     File "/usr/lib/python3.9/distutils/command/build_scripts.py", line 82, in copy_scripts
2021-07-16T00:47:25,308       encoding, lines = tokenize.detect_encoding(f.readline)
2021-07-16T00:47:25,308     File "/usr/lib/python3.9/tokenize.py", line 371, in detect_encoding
2021-07-16T00:47:25,308       encoding = find_cookie(first)
2021-07-16T00:47:25,309     File "/usr/lib/python3.9/tokenize.py", line 335, in find_cookie
2021-07-16T00:47:25,309       raise SyntaxError(msg)
2021-07-16T00:47:25,310   SyntaxError: invalid or missing encoding declaration for 'bin/.DS_Store'
2021-07-16T00:47:25,397   Building wheel for pywes (setup.py): finished with status 'error'
2021-07-16T00:47:25,398   ERROR: Failed building wheel for pywes
2021-07-16T00:47:25,398   Running setup.py clean for pywes
2021-07-16T00:47:25,399   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4qfya_nx/pywes_0506dc12f5884ff7a12c02573cb5f2d9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-16T00:47:26,694   running clean
2021-07-16T00:47:26,697   removing 'build/lib' (and everything under it)
2021-07-16T00:47:26,704   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-16T00:47:26,705   removing 'build/scripts-3.9' (and everything under it)
2021-07-16T00:47:26,706   removing 'build'
2021-07-16T00:47:26,764 Failed to build pywes
2021-07-16T00:47:26,765 ERROR: Failed to build one or more wheels
2021-07-16T00:47:26,766 Exception information:
2021-07-16T00:47:26,766 Traceback (most recent call last):
2021-07-16T00:47:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-16T00:47:26,766     status = self.run(options, args)
2021-07-16T00:47:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-16T00:47:26,766     return func(self, options, args)
2021-07-16T00:47:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-16T00:47:26,766     raise CommandError(
2021-07-16T00:47:26,766 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-16T00:47:26,768 Removed build tracker: '/tmp/pip-req-tracker-a50_upzh'