2021-07-16T03:34:00,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-1daqjspp
2021-07-16T03:34:00,885 Created temporary directory: /tmp/pip-req-tracker-jspjo5x7
2021-07-16T03:34:00,886 Initialized build tracking at /tmp/pip-req-tracker-jspjo5x7
2021-07-16T03:34:00,886 Created build tracker: /tmp/pip-req-tracker-jspjo5x7
2021-07-16T03:34:00,886 Entered build tracker: /tmp/pip-req-tracker-jspjo5x7
2021-07-16T03:34:00,887 Created temporary directory: /tmp/pip-wheel-xeki9yxy
2021-07-16T03:34:00,918 1 location(s) to search for versions of dcicpyvcf:
2021-07-16T03:34:00,918 * https://pypi.org/simple/dcicpyvcf/
2021-07-16T03:34:00,919 Fetching project page and analyzing links: https://pypi.org/simple/dcicpyvcf/
2021-07-16T03:34:00,919 Getting page https://pypi.org/simple/dcicpyvcf/
2021-07-16T03:34:00,921 Found index url https://pypi.org/simple
2021-07-16T03:34:01,096   Found link https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 (from https://pypi.org/simple/dcicpyvcf/), version: 1.0.0
2021-07-16T03:34:01,096 Skipping link: not a file: https://pypi.org/simple/dcicpyvcf/
2021-07-16T03:34:01,117 Given no hashes to check 1 links for project 'dcicpyvcf': discarding no candidates
2021-07-16T03:34:01,138 Collecting dcicpyvcf==1.0.0
2021-07-16T03:34:01,140   Created temporary directory: /tmp/pip-unpack-_0uvf2tm
2021-07-16T03:34:01,311   Downloading dcicpyvcf-1.0.0.tar.gz (35 kB)
2021-07-16T03:34:01,387   Added dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 to build tracker '/tmp/pip-req-tracker-jspjo5x7'
2021-07-16T03:34:01,388     Running setup.py (path:/tmp/pip-wheel-xeki9yxy/dcicpyvcf_fea5db2500914f868dc18231a503ce39/setup.py) egg_info for package dcicpyvcf
2021-07-16T03:34:01,389     Created temporary directory: /tmp/pip-pip-egg-info-z0agljdi
2021-07-16T03:34:01,389     Running command python setup.py egg_info
2021-07-16T03:34:02,998     running egg_info
2021-07-16T03:34:03,002     creating /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info
2021-07-16T03:34:03,003     writing /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/PKG-INFO
2021-07-16T03:34:03,006     writing dependency_links to /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/dependency_links.txt
2021-07-16T03:34:03,008     writing entry points to /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/entry_points.txt
2021-07-16T03:34:03,010     writing requirements to /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/requires.txt
2021-07-16T03:34:03,011     writing top-level names to /tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/top_level.txt
2021-07-16T03:34:03,013     writing manifest file '/tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/SOURCES.txt'
2021-07-16T03:34:03,203     reading manifest file '/tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/SOURCES.txt'
2021-07-16T03:34:03,206     reading manifest template 'MANIFEST.in'
2021-07-16T03:34:03,217     writing manifest file '/tmp/pip-pip-egg-info-z0agljdi/dcicpyvcf.egg-info/SOURCES.txt'
2021-07-16T03:34:03,308   Source in /tmp/pip-wheel-xeki9yxy/dcicpyvcf_fea5db2500914f868dc18231a503ce39 has version 1.0.0, which satisfies requirement dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449
2021-07-16T03:34:03,309   Removed dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 from build tracker '/tmp/pip-req-tracker-jspjo5x7'
2021-07-16T03:34:03,314 Created temporary directory: /tmp/pip-unpack-3gkamu0v
2021-07-16T03:34:03,314 Building wheels for collected packages: dcicpyvcf
2021-07-16T03:34:03,319   Created temporary directory: /tmp/pip-wheel-p0jr96vm
2021-07-16T03:34:03,320   Building wheel for dcicpyvcf (setup.py): started
2021-07-16T03:34:03,320   Destination directory: /tmp/pip-wheel-p0jr96vm
2021-07-16T03:34:03,320   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xeki9yxy/dcicpyvcf_fea5db2500914f868dc18231a503ce39/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xeki9yxy/dcicpyvcf_fea5db2500914f868dc18231a503ce39/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-p0jr96vm
2021-07-16T03:34:04,860   running bdist_wheel
2021-07-16T03:34:04,867   running build
2021-07-16T03:34:04,867   running build_py
2021-07-16T03:34:05,017   creating build
2021-07-16T03:34:05,018   creating build/lib.linux-armv7l-3.9
2021-07-16T03:34:05,019   creating build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,020   copying vcf/filters.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,023   copying vcf/__init__.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,025   copying vcf/utils.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,027   copying vcf/parser.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,030   copying vcf/sample_filter.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,032   copying vcf/model.py -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,036   creating build/lib.linux-armv7l-3.9/vcf/test
2021-07-16T03:34:05,038   copying vcf/test/prof.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-16T03:34:05,040   copying vcf/test/__init__.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-16T03:34:05,042   copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-3.9/vcf/test
2021-07-16T03:34:05,046   running egg_info
2021-07-16T03:34:05,062   writing dcicpyvcf.egg-info/PKG-INFO
2021-07-16T03:34:05,064   writing dependency_links to dcicpyvcf.egg-info/dependency_links.txt
2021-07-16T03:34:05,067   writing entry points to dcicpyvcf.egg-info/entry_points.txt
2021-07-16T03:34:05,068   writing requirements to dcicpyvcf.egg-info/requires.txt
2021-07-16T03:34:05,070   writing top-level names to dcicpyvcf.egg-info/top_level.txt
2021-07-16T03:34:05,109   reading manifest file 'dcicpyvcf.egg-info/SOURCES.txt'
2021-07-16T03:34:05,112   reading manifest template 'MANIFEST.in'
2021-07-16T03:34:05,123   writing manifest file 'dcicpyvcf.egg-info/SOURCES.txt'
2021-07-16T03:34:05,129   copying vcf/cparse.pyx -> build/lib.linux-armv7l-3.9/vcf
2021-07-16T03:34:05,142   /usr/local/lib/python3.9/dist-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
2021-07-16T03:34:05,142     warnings.warn(
2021-07-16T03:34:05,142   Fixing build/lib.linux-armv7l-3.9/vcf/filters.py build/lib.linux-armv7l-3.9/vcf/__init__.py build/lib.linux-armv7l-3.9/vcf/utils.py build/lib.linux-armv7l-3.9/vcf/parser.py build/lib.linux-armv7l-3.9/vcf/sample_filter.py build/lib.linux-armv7l-3.9/vcf/model.py build/lib.linux-armv7l-3.9/vcf/test/prof.py build/lib.linux-armv7l-3.9/vcf/test/__init__.py build/lib.linux-armv7l-3.9/vcf/test/test_vcf.py
2021-07-16T03:34:05,183   Skipping optional fixer: buffer
2021-07-16T03:34:05,262   Skipping optional fixer: idioms
2021-07-16T03:34:05,455   Skipping optional fixer: set_literal
2021-07-16T03:34:05,594   Skipping optional fixer: ws_comma
2021-07-16T03:34:09,853   Fixing build/lib.linux-armv7l-3.9/vcf/filters.py build/lib.linux-armv7l-3.9/vcf/__init__.py build/lib.linux-armv7l-3.9/vcf/utils.py build/lib.linux-armv7l-3.9/vcf/parser.py build/lib.linux-armv7l-3.9/vcf/sample_filter.py build/lib.linux-armv7l-3.9/vcf/model.py build/lib.linux-armv7l-3.9/vcf/test/prof.py build/lib.linux-armv7l-3.9/vcf/test/__init__.py build/lib.linux-armv7l-3.9/vcf/test/test_vcf.py
2021-07-16T03:34:09,866   Skipping optional fixer: buffer
2021-07-16T03:34:09,929   Skipping optional fixer: idioms
2021-07-16T03:34:10,112   Skipping optional fixer: set_literal
2021-07-16T03:34:10,235   Skipping optional fixer: ws_comma
2021-07-16T03:34:10,425   running build_ext
2021-07-16T03:34:10,500   cythoning vcf/cparse.pyx to vcf/cparse.c
2021-07-16T03:34:11,432   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-xeki9yxy/dcicpyvcf_fea5db2500914f868dc18231a503ce39/vcf/cparse.pyx
2021-07-16T03:34:11,432     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-16T03:34:11,532   warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-16T03:34:11,532   warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-16T03:34:11,532   warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-16T03:34:11,532   warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-16T03:34:11,836   building 'vcf.cparse' extension
2021-07-16T03:34:11,837   creating build/temp.linux-armv7l-3.9
2021-07-16T03:34:11,837   creating build/temp.linux-armv7l-3.9/vcf
2021-07-16T03:34:11,838   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c vcf/cparse.c -o build/temp.linux-armv7l-3.9/vcf/cparse.o
2021-07-16T03:34:16,885   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/vcf/cparse.o -o build/lib.linux-armv7l-3.9/vcf/cparse.cpython-39-arm-linux-gnueabihf.so
2021-07-16T03:34:17,038   running build_scripts
2021-07-16T03:34:17,039   creating build/scripts-3.9
2021-07-16T03:34:17,040   copying and adjusting scripts/vcf_melt -> build/scripts-3.9
2021-07-16T03:34:17,043   copying and adjusting scripts/vcf_filter.py -> build/scripts-3.9
2021-07-16T03:34:17,045   copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.9
2021-07-16T03:34:17,046   changing mode of build/scripts-3.9/vcf_melt from 644 to 755
2021-07-16T03:34:17,046   changing mode of build/scripts-3.9/vcf_filter.py from 644 to 755
2021-07-16T03:34:17,047   changing mode of build/scripts-3.9/vcf_sample_filter.py from 644 to 755
2021-07-16T03:34:17,059   installing to build/bdist.linux-armv7l/wheel
2021-07-16T03:34:17,059   running install
2021-07-16T03:34:17,061   running install_lib
2021-07-16T03:34:17,066   creating build/bdist.linux-armv7l
2021-07-16T03:34:17,067   creating build/bdist.linux-armv7l/wheel
2021-07-16T03:34:17,069   creating build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,070   copying build/lib.linux-armv7l-3.9/vcf/filters.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,073   copying build/lib.linux-armv7l-3.9/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,075   copying build/lib.linux-armv7l-3.9/vcf/cparse.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,084   creating build/bdist.linux-armv7l/wheel/vcf/test
2021-07-16T03:34:17,085   copying build/lib.linux-armv7l-3.9/vcf/test/prof.py -> build/bdist.linux-armv7l/wheel/vcf/test
2021-07-16T03:34:17,087   copying build/lib.linux-armv7l-3.9/vcf/test/__init__.py -> build/bdist.linux-armv7l/wheel/vcf/test
2021-07-16T03:34:17,088   copying build/lib.linux-armv7l-3.9/vcf/test/test_vcf.py -> build/bdist.linux-armv7l/wheel/vcf/test
2021-07-16T03:34:17,092   copying build/lib.linux-armv7l-3.9/vcf/utils.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,094   copying build/lib.linux-armv7l-3.9/vcf/parser.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,097   copying build/lib.linux-armv7l-3.9/vcf/sample_filter.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,099   copying build/lib.linux-armv7l-3.9/vcf/model.py -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,102   copying build/lib.linux-armv7l-3.9/vcf/cparse.pyx -> build/bdist.linux-armv7l/wheel/vcf
2021-07-16T03:34:17,104   running install_egg_info
2021-07-16T03:34:17,112   Copying dcicpyvcf.egg-info to build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0-py3.9.egg-info
2021-07-16T03:34:17,129   running install_scripts
2021-07-16T03:34:17,156   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data
2021-07-16T03:34:17,157   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2021-07-16T03:34:17,158   copying build/scripts-3.9/vcf_sample_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2021-07-16T03:34:17,161   copying build/scripts-3.9/vcf_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2021-07-16T03:34:17,163   copying build/scripts-3.9/vcf_melt -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2021-07-16T03:34:17,165   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_sample_filter.py to 755
2021-07-16T03:34:17,165   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_filter.py to 755
2021-07-16T03:34:17,166   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_melt to 755
2021-07-16T03:34:17,193   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.dist-info/WHEEL
2021-07-16T03:34:17,197   creating '/tmp/pip-wheel-p0jr96vm/dcicpyvcf-1.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-16T03:34:17,201   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_filter.py'
2021-07-16T03:34:17,203   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_melt'
2021-07-16T03:34:17,205   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_sample_filter.py'
2021-07-16T03:34:17,208   adding 'vcf/__init__.py'
2021-07-16T03:34:17,274   adding 'vcf/cparse.cpython-39-arm-linux-gnueabihf.so'
2021-07-16T03:34:17,278   adding 'vcf/cparse.pyx'
2021-07-16T03:34:17,280   adding 'vcf/filters.py'
2021-07-16T03:34:17,284   adding 'vcf/model.py'
2021-07-16T03:34:17,289   adding 'vcf/parser.py'
2021-07-16T03:34:17,293   adding 'vcf/sample_filter.py'
2021-07-16T03:34:17,297   adding 'vcf/utils.py'
2021-07-16T03:34:17,302   adding 'vcf/test/__init__.py'
2021-07-16T03:34:17,305   adding 'vcf/test/prof.py'
2021-07-16T03:34:17,314   adding 'vcf/test/test_vcf.py'
2021-07-16T03:34:17,317   adding 'dcicpyvcf-1.0.0.dist-info/METADATA'
2021-07-16T03:34:17,318   adding 'dcicpyvcf-1.0.0.dist-info/WHEEL'
2021-07-16T03:34:17,320   adding 'dcicpyvcf-1.0.0.dist-info/entry_points.txt'
2021-07-16T03:34:17,321   adding 'dcicpyvcf-1.0.0.dist-info/top_level.txt'
2021-07-16T03:34:17,323   adding 'dcicpyvcf-1.0.0.dist-info/RECORD'
2021-07-16T03:34:17,327   removing build/bdist.linux-armv7l/wheel
2021-07-16T03:34:17,511   Building wheel for dcicpyvcf (setup.py): finished with status 'done'
2021-07-16T03:34:17,516   Created wheel for dcicpyvcf: filename=dcicpyvcf-1.0.0-cp39-cp39-linux_armv7l.whl size=132786 sha256=97426774d9d398b999abcd7f0cba9133129763146612c9f0128d0d563b2ead73
2021-07-16T03:34:17,516   Stored in directory: /tmp/pip-ephem-wheel-cache-1daqjspp/wheels/d7/40/ec/f08700d6cf87fc8b0d01f4bdda3bddcac5b0b71e580a8597db
2021-07-16T03:34:17,527 Successfully built dcicpyvcf
2021-07-16T03:34:17,538 Removed build tracker: '/tmp/pip-req-tracker-jspjo5x7'