2021-07-16T03:42:53,443 Created temporary directory: /tmp/pip-ephem-wheel-cache-d5oy7xuh 2021-07-16T03:42:53,445 Created temporary directory: /tmp/pip-req-tracker-c503asm1 2021-07-16T03:42:53,446 Initialized build tracking at /tmp/pip-req-tracker-c503asm1 2021-07-16T03:42:53,446 Created build tracker: /tmp/pip-req-tracker-c503asm1 2021-07-16T03:42:53,446 Entered build tracker: /tmp/pip-req-tracker-c503asm1 2021-07-16T03:42:53,447 Created temporary directory: /tmp/pip-wheel-wgzz1rbp 2021-07-16T03:42:53,475 1 location(s) to search for versions of molmod: 2021-07-16T03:42:53,475 * https://pypi.org/simple/molmod/ 2021-07-16T03:42:53,476 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-16T03:42:53,476 Getting page https://pypi.org/simple/molmod/ 2021-07-16T03:42:53,478 Found index url https://pypi.org/simple 2021-07-16T03:42:53,661 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-16T03:42:53,662 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-16T03:42:53,662 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-16T03:42:53,663 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-16T03:42:53,663 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-16T03:42:53,663 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-16T03:42:53,663 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-16T03:42:53,664 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-16T03:42:53,664 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-16T03:42:53,664 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-16T03:42:53,665 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-16T03:42:53,665 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-16T03:42:53,665 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-16T03:42:53,665 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-16T03:42:53,666 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-16T03:42:53,666 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-16T03:42:53,666 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-16T03:42:53,686 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-16T03:42:53,704 Collecting molmod==1.4.6 2021-07-16T03:42:53,706 Created temporary directory: /tmp/pip-unpack-2mhc8qs6 2021-07-16T03:42:54,321 Downloading molmod-1.4.6.tar.gz (1.7 MB) 2021-07-16T03:42:55,255 Added molmod==1.4.6 from https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 to build tracker '/tmp/pip-req-tracker-c503asm1' 2021-07-16T03:42:55,256 Running setup.py (path:/tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/setup.py) egg_info for package molmod 2021-07-16T03:42:55,257 Created temporary directory: /tmp/pip-pip-egg-info-6eutepmc 2021-07-16T03:42:55,257 Running command python setup.py egg_info 2021-07-16T03:42:56,782 fatal: not a git repository (or any of the parent directories): .git 2021-07-16T03:42:57,008 Trying to get the version from git describe 2021-07-16T03:42:57,008 Trying to get the version from {} /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/molmod/version.py 2021-07-16T03:42:57,008 Version according to /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/molmod/version.py: 1.4.6 2021-07-16T03:42:57,008 running egg_info 2021-07-16T03:42:57,010 creating /tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info 2021-07-16T03:42:57,011 writing /tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/PKG-INFO 2021-07-16T03:42:57,014 writing dependency_links to /tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/dependency_links.txt 2021-07-16T03:42:57,016 writing requirements to /tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/requires.txt 2021-07-16T03:42:57,017 writing top-level names to /tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/top_level.txt 2021-07-16T03:42:57,019 writing manifest file '/tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/SOURCES.txt' 2021-07-16T03:42:57,234 reading manifest file '/tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/SOURCES.txt' 2021-07-16T03:42:57,236 reading manifest template 'MANIFEST.in' 2021-07-16T03:42:57,592 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-16T03:42:57,655 adding license file 'LICENSE.txt' 2021-07-16T03:42:57,667 writing manifest file '/tmp/pip-pip-egg-info-6eutepmc/molmod.egg-info/SOURCES.txt' 2021-07-16T03:42:57,786 Source in /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2 has version 1.4.6, which satisfies requirement molmod==1.4.6 from https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 2021-07-16T03:42:57,787 Removed molmod==1.4.6 from https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 from build tracker '/tmp/pip-req-tracker-c503asm1' 2021-07-16T03:42:57,791 Created temporary directory: /tmp/pip-unpack-nus2qfjw 2021-07-16T03:42:57,791 Building wheels for collected packages: molmod 2021-07-16T03:42:57,796 Created temporary directory: /tmp/pip-wheel-7g2rgzkx 2021-07-16T03:42:57,797 Building wheel for molmod (setup.py): started 2021-07-16T03:42:57,797 Destination directory: /tmp/pip-wheel-7g2rgzkx 2021-07-16T03:42:57,797 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7g2rgzkx 2021-07-16T03:42:59,268 Trying to get the version from git describe 2021-07-16T03:42:59,279 fatal: not a git repository (or any of the parent directories): .git 2021-07-16T03:42:59,280 Trying to get the version from {} /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/molmod/version.py 2021-07-16T03:42:59,280 Version according to /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/molmod/version.py: 1.4.6 2021-07-16T03:42:59,509 running bdist_wheel 2021-07-16T03:42:59,515 running build 2021-07-16T03:42:59,515 running build_py 2021-07-16T03:42:59,678 creating build 2021-07-16T03:42:59,678 creating build/lib.linux-armv7l-3.9 2021-07-16T03:42:59,679 creating build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,680 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,682 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,685 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,687 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,690 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,692 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,695 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,697 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,699 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,702 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,705 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,707 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,709 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,712 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,714 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,716 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,718 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,721 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,724 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,728 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,730 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,732 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,734 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,737 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,739 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,741 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:42:59,744 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,745 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,748 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,750 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,752 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,755 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,757 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,759 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,760 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,763 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,765 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,767 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,769 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,772 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,774 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,777 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,779 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,782 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,789 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,791 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,793 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,795 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,797 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,800 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,803 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T03:42:59,807 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,808 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,811 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,813 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,815 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,818 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,820 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,822 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,824 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,827 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,830 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,832 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,835 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,838 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,840 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,842 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,845 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,848 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,850 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,853 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T03:42:59,857 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,858 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,860 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,862 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,864 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,866 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,868 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,870 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,872 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,874 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,876 copying molmod/io/test/test_chk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,878 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,880 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,882 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,885 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,886 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,888 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,891 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,893 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T03:42:59,895 running egg_info 2021-07-16T03:42:59,911 writing molmod.egg-info/PKG-INFO 2021-07-16T03:42:59,912 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-16T03:42:59,914 writing requirements to molmod.egg-info/requires.txt 2021-07-16T03:42:59,915 writing top-level names to molmod.egg-info/top_level.txt 2021-07-16T03:42:59,962 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-16T03:42:59,971 reading manifest template 'MANIFEST.in' 2021-07-16T03:43:00,325 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-16T03:43:00,383 adding license file 'LICENSE.txt' 2021-07-16T03:43:00,398 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-16T03:43:00,414 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,417 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,419 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,421 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,423 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,426 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,428 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,430 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,432 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,434 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,436 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,438 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,440 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,442 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,444 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,447 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,449 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,452 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T03:43:00,454 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,455 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,457 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,460 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,473 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,489 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,492 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,495 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T03:43:00,499 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,500 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,504 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,520 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,522 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,524 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,526 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,550 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,552 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,554 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,557 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,559 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,561 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,564 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,566 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,568 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,570 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,573 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,575 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,578 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,580 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,591 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,594 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,596 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,599 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,612 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,614 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,616 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,618 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,621 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,624 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,627 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,629 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,631 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,633 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,636 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,638 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,640 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,642 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,650 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,653 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,655 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,657 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,660 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,662 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,665 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,667 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,670 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,672 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,675 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,677 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,680 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,682 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,684 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,691 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,695 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,697 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,699 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,702 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,704 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,706 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,709 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T03:43:00,711 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-16T03:43:00,711 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T03:43:00,712 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T03:43:00,715 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T03:43:00,717 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T03:43:00,719 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,720 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,723 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,725 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,727 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,729 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,731 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T03:43:00,735 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,735 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,738 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,740 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,743 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,745 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,747 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T03:43:00,749 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,750 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,753 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,755 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,758 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,760 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,765 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,767 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T03:43:00,769 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,770 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,773 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,775 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,777 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,780 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T03:43:00,791 running build_ext 2021-07-16T03:43:00,798 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-16T03:43:01,428 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wgzz1rbp/molmod_7b980ff3e7274a208e5126f674f341b2/molmod/ext.pyx 2021-07-16T03:43:01,429 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-16T03:43:08,781 building 'molmod.ext' extension 2021-07-16T03:43:08,782 creating build/temp.linux-armv7l-3.9 2021-07-16T03:43:08,783 creating build/temp.linux-armv7l-3.9/molmod 2021-07-16T03:43:08,784 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-16T03:43:09,035 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-16T03:43:09,444 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T03:43:09,445 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T03:43:09,445 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T03:43:09,445 from molmod/ext.c:612: 2021-07-16T03:43:09,445 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T03:43:09,445 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T03:43:09,445 | ^~~~~~~ 2021-07-16T03:43:09,523 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-16T03:43:09,525 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,525 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,526 | ^~ 2021-07-16T03:43:09,527 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,527 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,528 | ^~ 2021-07-16T03:43:09,530 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,530 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,530 | ^~ 2021-07-16T03:43:09,532 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,532 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,532 | ^~ 2021-07-16T03:43:09,570 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-16T03:43:09,572 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,572 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,572 | ^~ 2021-07-16T03:43:09,574 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,575 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,575 | ^~ 2021-07-16T03:43:09,577 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,577 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T03:43:09,577 | ^~ 2021-07-16T03:43:09,623 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-16T03:43:09,625 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,626 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-16T03:43:09,626 | ^~ 2021-07-16T03:43:09,674 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-16T03:43:09,676 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,677 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-16T03:43:09,677 | ^~ 2021-07-16T03:43:09,726 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-16T03:43:09,729 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,729 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-16T03:43:09,729 | ^~ 2021-07-16T03:43:09,789 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-16T03:43:09,793 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-16T03:43:09,793 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-16T03:43:09,794 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T03:43:09,794 In file included from molmod/ext.c:623: 2021-07-16T03:43:09,794 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-16T03:43:09,794 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-16T03:43:09,794 | ~~~~~~^~~~~~ 2021-07-16T03:43:09,795 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-16T03:43:09,799 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,799 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-16T03:43:09,799 | ^~ 2021-07-16T03:43:09,816 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-16T03:43:09,816 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-16T03:43:09,817 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T03:43:09,817 In file included from molmod/ext.c:623: 2021-07-16T03:43:09,817 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-16T03:43:09,817 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-16T03:43:09,817 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-16T03:43:09,825 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-16T03:43:09,829 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,829 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-16T03:43:09,829 | ^~ 2021-07-16T03:43:09,833 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T03:43:09,833 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-16T03:43:09,834 | ^~ 2021-07-16T03:43:25,969 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-16T03:43:26,310 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-16T03:43:26,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-16T03:43:26,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-16T03:43:26,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-16T03:43:27,186 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-16T03:43:27,380 installing to build/bdist.linux-armv7l/wheel 2021-07-16T03:43:27,381 running install 2021-07-16T03:43:27,382 running install_lib 2021-07-16T03:43:27,389 creating build/bdist.linux-armv7l 2021-07-16T03:43:27,389 creating build/bdist.linux-armv7l/wheel 2021-07-16T03:43:27,392 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,393 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,396 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,400 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,401 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,404 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,406 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,408 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,410 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,412 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,414 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,416 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,419 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,421 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,425 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,427 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,431 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,433 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,436 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,439 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,442 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,445 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,447 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,450 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,452 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,455 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,458 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,460 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T03:43:27,462 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,465 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,467 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,470 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,472 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,475 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,478 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,480 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,484 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,485 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,488 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,489 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,491 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,493 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,496 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,497 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,499 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,502 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,504 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,506 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,508 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_chk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,511 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,513 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,515 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,517 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,519 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,521 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,524 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,526 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T03:43:27,528 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,530 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,532 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,535 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,537 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,540 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,542 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,545 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,548 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,550 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,553 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,555 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,557 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,559 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,562 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,565 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,567 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,569 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T03:43:27,572 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,574 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,577 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,579 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,581 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,583 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,585 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,587 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,592 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,594 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,625 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,628 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,630 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,633 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-16T03:43:27,635 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,636 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,638 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,639 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,643 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,644 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,647 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,649 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T03:43:27,652 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,653 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,655 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,657 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,659 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,661 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,663 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T03:43:27,666 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,667 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,669 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,671 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,673 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,675 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T03:43:27,678 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,679 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,681 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,683 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,685 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,687 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,689 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T03:43:27,692 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T03:43:27,693 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T03:43:27,695 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T03:43:27,697 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T03:43:27,699 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,701 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,704 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,706 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,708 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,711 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,713 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,715 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,718 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,720 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,723 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,726 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,727 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,729 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,731 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,734 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,736 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,738 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,740 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,743 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,746 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,748 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,751 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,753 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,755 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,757 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,764 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,766 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,768 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,770 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,772 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,774 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,776 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,779 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,781 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,783 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,786 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,787 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,790 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,791 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,794 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,796 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,798 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,805 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,807 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,809 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,811 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,813 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,815 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,817 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,820 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,822 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,849 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,851 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,853 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,855 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,857 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,871 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,873 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,876 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,878 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,880 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,882 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,883 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,899 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,903 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,905 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,907 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,909 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,920 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,922 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,924 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,928 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T03:43:27,932 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,934 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,937 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,940 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,951 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,966 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,970 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T03:43:27,972 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,974 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,977 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,982 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,984 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,986 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,989 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,991 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,993 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,995 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:27,998 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:28,000 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T03:43:28,002 running install_egg_info 2021-07-16T03:43:28,008 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.6-py3.9.egg-info 2021-07-16T03:43:28,026 running install_scripts 2021-07-16T03:43:28,069 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-16T03:43:28,075 creating build/bdist.linux-armv7l/wheel/molmod-1.4.6.dist-info/WHEEL 2021-07-16T03:43:28,078 creating '/tmp/pip-wheel-7g2rgzkx/molmod-1.4.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T03:43:28,081 adding 'molmod/__init__.py' 2021-07-16T03:43:28,084 adding 'molmod/binning.py' 2021-07-16T03:43:28,085 adding 'molmod/bonds.py' 2021-07-16T03:43:28,087 adding 'molmod/clusters.py' 2021-07-16T03:43:28,089 adding 'molmod/common.c' 2021-07-16T03:43:28,090 adding 'molmod/common.h' 2021-07-16T03:43:28,091 adding 'molmod/constants.py' 2021-07-16T03:43:28,315 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T03:43:28,326 adding 'molmod/ext.pyx' 2021-07-16T03:43:28,327 adding 'molmod/ff.c' 2021-07-16T03:43:28,329 adding 'molmod/ff.h' 2021-07-16T03:43:28,330 adding 'molmod/ff.pxd' 2021-07-16T03:43:28,331 adding 'molmod/graphs.c' 2021-07-16T03:43:28,332 adding 'molmod/graphs.h' 2021-07-16T03:43:28,333 adding 'molmod/graphs.pxd' 2021-07-16T03:43:28,344 adding 'molmod/graphs.py' 2021-07-16T03:43:28,347 adding 'molmod/ic.py' 2021-07-16T03:43:28,349 adding 'molmod/isotopes.py' 2021-07-16T03:43:28,351 adding 'molmod/log.py' 2021-07-16T03:43:28,360 adding 'molmod/minimizer.py' 2021-07-16T03:43:28,364 adding 'molmod/molecular_graphs.py' 2021-07-16T03:43:28,365 adding 'molmod/molecules.c' 2021-07-16T03:43:28,366 adding 'molmod/molecules.h' 2021-07-16T03:43:28,368 adding 'molmod/molecules.pxd' 2021-07-16T03:43:28,370 adding 'molmod/molecules.py' 2021-07-16T03:43:28,372 adding 'molmod/pairff.py' 2021-07-16T03:43:28,373 adding 'molmod/periodic.py' 2021-07-16T03:43:28,375 adding 'molmod/quaternions.py' 2021-07-16T03:43:28,378 adding 'molmod/randomize.py' 2021-07-16T03:43:28,379 adding 'molmod/similarity.c' 2021-07-16T03:43:28,380 adding 'molmod/similarity.h' 2021-07-16T03:43:28,382 adding 'molmod/similarity.pxd' 2021-07-16T03:43:28,383 adding 'molmod/similarity.py' 2021-07-16T03:43:28,384 adding 'molmod/symmetry.py' 2021-07-16T03:43:28,386 adding 'molmod/toyff.py' 2021-07-16T03:43:28,389 adding 'molmod/transformations.py' 2021-07-16T03:43:28,391 adding 'molmod/unit_cells.c' 2021-07-16T03:43:28,392 adding 'molmod/unit_cells.h' 2021-07-16T03:43:28,393 adding 'molmod/unit_cells.pxd' 2021-07-16T03:43:28,396 adding 'molmod/unit_cells.py' 2021-07-16T03:43:28,397 adding 'molmod/units.py' 2021-07-16T03:43:28,399 adding 'molmod/utils.py' 2021-07-16T03:43:28,401 adding 'molmod/vectors.py' 2021-07-16T03:43:28,402 adding 'molmod/version.py' 2021-07-16T03:43:28,404 adding 'molmod/zmatrix.py' 2021-07-16T03:43:28,406 adding 'molmod/data/bonds.csv' 2021-07-16T03:43:28,408 adding 'molmod/data/bonds.ods' 2021-07-16T03:43:28,493 adding 'molmod/data/mass.mas03' 2021-07-16T03:43:28,578 adding 'molmod/data/nubtab03.asc' 2021-07-16T03:43:28,584 adding 'molmod/data/periodic.csv' 2021-07-16T03:43:28,587 adding 'molmod/data/periodic.ods' 2021-07-16T03:43:28,602 adding 'molmod/data/toyff_angles.txt' 2021-07-16T03:43:28,609 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-16T03:43:28,741 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-16T03:43:28,747 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-16T03:43:28,749 adding 'molmod/data/test/5ringOH.xyz' 2021-07-16T03:43:28,750 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-16T03:43:28,995 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-16T03:43:29,004 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-16T03:43:29,005 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-16T03:43:29,007 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-16T03:43:29,008 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-16T03:43:29,009 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-16T03:43:29,011 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-16T03:43:29,012 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-16T03:43:29,013 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-16T03:43:29,015 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-16T03:43:29,016 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-16T03:43:29,017 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-16T03:43:29,021 adding 'molmod/data/test/alanine.cube' 2021-07-16T03:43:29,022 adding 'molmod/data/test/argon.xyz' 2021-07-16T03:43:29,100 adding 'molmod/data/test/bartek.atrj' 2021-07-16T03:43:29,103 adding 'molmod/data/test/benzene.xyz' 2021-07-16T03:43:29,105 adding 'molmod/data/test/butane.xyz' 2021-07-16T03:43:29,106 adding 'molmod/data/test/caplayer.cml' 2021-07-16T03:43:29,173 adding 'molmod/data/test/crystal_api.out' 2021-07-16T03:43:29,178 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-16T03:43:29,179 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-16T03:43:29,180 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-16T03:43:29,181 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-16T03:43:29,186 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-16T03:43:29,188 adding 'molmod/data/test/dopamine.xyz' 2021-07-16T03:43:29,189 adding 'molmod/data/test/ethane.xyz' 2021-07-16T03:43:29,190 adding 'molmod/data/test/ethene.xyz' 2021-07-16T03:43:29,191 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-16T03:43:29,192 adding 'molmod/data/test/example.sdf' 2021-07-16T03:43:29,194 adding 'molmod/data/test/formol.xyz' 2021-07-16T03:43:29,195 adding 'molmod/data/test/funny.xyz' 2021-07-16T03:43:29,196 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-16T03:43:29,226 adding 'molmod/data/test/il2.pdb' 2021-07-16T03:43:29,230 adding 'molmod/data/test/lammps_dump.txt' 2021-07-16T03:43:29,231 adding 'molmod/data/test/lau.xyz' 2021-07-16T03:43:29,232 adding 'molmod/data/test/octane.xyz' 2021-07-16T03:43:29,233 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-16T03:43:29,235 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-16T03:43:29,236 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-16T03:43:29,237 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-16T03:43:29,239 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-16T03:43:29,240 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-16T03:43:29,242 adding 'molmod/data/test/pentapeptide.psf' 2021-07-16T03:43:29,244 adding 'molmod/data/test/precursor.xyz' 2021-07-16T03:43:29,245 adding 'molmod/data/test/probes.xyz' 2021-07-16T03:43:29,246 adding 'molmod/data/test/tea.xyz' 2021-07-16T03:43:29,247 adding 'molmod/data/test/tetra.xyz' 2021-07-16T03:43:29,269 adding 'molmod/data/test/thf.psf' 2021-07-16T03:43:29,277 adding 'molmod/data/test/thf.xyz' 2021-07-16T03:43:29,278 adding 'molmod/data/test/thf_64.cell' 2021-07-16T03:43:29,279 adding 'molmod/data/test/thf_single.xyz' 2021-07-16T03:43:29,281 adding 'molmod/data/test/tpa.xyz' 2021-07-16T03:43:29,282 adding 'molmod/data/test/water.xyz' 2021-07-16T03:43:29,283 adding 'molmod/data/test/water2.gro' 2021-07-16T03:43:29,284 adding 'molmod/data/test/water_md.inp' 2021-07-16T03:43:29,285 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-16T03:43:29,288 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-16T03:43:29,289 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-16T03:43:29,290 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-16T03:43:29,292 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-16T03:43:29,293 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-16T03:43:29,294 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-16T03:43:29,296 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-16T03:43:29,297 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-16T03:43:29,298 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-16T03:43:29,300 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-16T03:43:29,302 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-16T03:43:29,303 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-16T03:43:29,304 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-16T03:43:29,305 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-16T03:43:29,307 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-16T03:43:29,309 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-16T03:43:29,310 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-16T03:43:29,312 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-16T03:43:29,313 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-16T03:43:29,324 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-16T03:43:29,325 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-16T03:43:29,326 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-16T03:43:29,328 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-16T03:43:29,330 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-16T03:43:29,331 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-16T03:43:29,332 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-16T03:43:29,334 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-16T03:43:29,336 adding 'molmod/io/__init__.py' 2021-07-16T03:43:29,337 adding 'molmod/io/atrj.py' 2021-07-16T03:43:29,339 adding 'molmod/io/chk.py' 2021-07-16T03:43:29,341 adding 'molmod/io/cml.py' 2021-07-16T03:43:29,342 adding 'molmod/io/common.py' 2021-07-16T03:43:29,344 adding 'molmod/io/cp2k.py' 2021-07-16T03:43:29,346 adding 'molmod/io/cpmd.py' 2021-07-16T03:43:29,347 adding 'molmod/io/crystal.py' 2021-07-16T03:43:29,349 adding 'molmod/io/cube.py' 2021-07-16T03:43:29,351 adding 'molmod/io/dlpoly.py' 2021-07-16T03:43:29,353 adding 'molmod/io/fchk.py' 2021-07-16T03:43:29,355 adding 'molmod/io/gamess.py' 2021-07-16T03:43:29,356 adding 'molmod/io/gromacs.py' 2021-07-16T03:43:29,358 adding 'molmod/io/lammps.py' 2021-07-16T03:43:29,360 adding 'molmod/io/number_state.py' 2021-07-16T03:43:29,362 adding 'molmod/io/pdb.py' 2021-07-16T03:43:29,364 adding 'molmod/io/psf.py' 2021-07-16T03:43:29,366 adding 'molmod/io/sdf.py' 2021-07-16T03:43:29,368 adding 'molmod/io/xyz.py' 2021-07-16T03:43:29,370 adding 'molmod/io/test/__init__.py' 2021-07-16T03:43:29,371 adding 'molmod/io/test/test_atrj.py' 2021-07-16T03:43:29,373 adding 'molmod/io/test/test_chk.py' 2021-07-16T03:43:29,374 adding 'molmod/io/test/test_cml.py' 2021-07-16T03:43:29,375 adding 'molmod/io/test/test_cp2k.py' 2021-07-16T03:43:29,377 adding 'molmod/io/test/test_cpmd.py' 2021-07-16T03:43:29,378 adding 'molmod/io/test/test_crystal.py' 2021-07-16T03:43:29,379 adding 'molmod/io/test/test_cube.py' 2021-07-16T03:43:29,381 adding 'molmod/io/test/test_dlpoly.py' 2021-07-16T03:43:29,382 adding 'molmod/io/test/test_fchk.py' 2021-07-16T03:43:29,383 adding 'molmod/io/test/test_gamess.py' 2021-07-16T03:43:29,385 adding 'molmod/io/test/test_gromacs.py' 2021-07-16T03:43:29,386 adding 'molmod/io/test/test_lammps.py' 2021-07-16T03:43:29,387 adding 'molmod/io/test/test_number_state.py' 2021-07-16T03:43:29,389 adding 'molmod/io/test/test_pdb.py' 2021-07-16T03:43:29,390 adding 'molmod/io/test/test_psf.py' 2021-07-16T03:43:29,391 adding 'molmod/io/test/test_sdf.py' 2021-07-16T03:43:29,393 adding 'molmod/io/test/test_xyz.py' 2021-07-16T03:43:29,395 adding 'molmod/test/__init__.py' 2021-07-16T03:43:29,396 adding 'molmod/test/common.py' 2021-07-16T03:43:29,398 adding 'molmod/test/test_binning.py' 2021-07-16T03:43:29,399 adding 'molmod/test/test_clusters.py' 2021-07-16T03:43:29,400 adding 'molmod/test/test_data.py' 2021-07-16T03:43:29,402 adding 'molmod/test/test_examples.py' 2021-07-16T03:43:29,405 adding 'molmod/test/test_graphs.py' 2021-07-16T03:43:29,407 adding 'molmod/test/test_ic.py' 2021-07-16T03:43:29,408 adding 'molmod/test/test_log.py' 2021-07-16T03:43:29,410 adding 'molmod/test/test_minimizer.py' 2021-07-16T03:43:29,413 adding 'molmod/test/test_molecular_graphs.py' 2021-07-16T03:43:29,415 adding 'molmod/test/test_molecules.py' 2021-07-16T03:43:29,417 adding 'molmod/test/test_pairff.py' 2021-07-16T03:43:29,418 adding 'molmod/test/test_quaternions.py' 2021-07-16T03:43:29,420 adding 'molmod/test/test_randomize.py' 2021-07-16T03:43:29,421 adding 'molmod/test/test_similarity.py' 2021-07-16T03:43:29,422 adding 'molmod/test/test_symmetry.py' 2021-07-16T03:43:29,424 adding 'molmod/test/test_toyff.py' 2021-07-16T03:43:29,426 adding 'molmod/test/test_transformations.py' 2021-07-16T03:43:29,429 adding 'molmod/test/test_unit_cells.py' 2021-07-16T03:43:29,430 adding 'molmod/test/test_units.py' 2021-07-16T03:43:29,432 adding 'molmod/test/test_utils.py' 2021-07-16T03:43:29,433 adding 'molmod/test/test_vectors.py' 2021-07-16T03:43:29,434 adding 'molmod/test/test_zmatrix.py' 2021-07-16T03:43:29,442 adding 'molmod-1.4.6.dist-info/LICENSE.txt' 2021-07-16T03:43:29,443 adding 'molmod-1.4.6.dist-info/METADATA' 2021-07-16T03:43:29,444 adding 'molmod-1.4.6.dist-info/WHEEL' 2021-07-16T03:43:29,445 adding 'molmod-1.4.6.dist-info/top_level.txt' 2021-07-16T03:43:29,448 adding 'molmod-1.4.6.dist-info/RECORD' 2021-07-16T03:43:29,484 removing build/bdist.linux-armv7l/wheel 2021-07-16T03:43:29,928 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-16T03:43:29,955 Created wheel for molmod: filename=molmod-1.4.6-cp39-cp39-linux_armv7l.whl size=1955500 sha256=b0a7018d75d184d3e6dca5fe56f23e1762af1d574e72c9d2df83cae4fae3c642 2021-07-16T03:43:29,956 Stored in directory: /tmp/pip-ephem-wheel-cache-d5oy7xuh/wheels/1d/79/90/4396b7150808f5bc9afb2413482bf64f647d73f22ed27ce836 2021-07-16T03:43:29,973 Successfully built molmod 2021-07-16T03:43:30,044 Removed build tracker: '/tmp/pip-req-tracker-c503asm1'