2021-07-16T08:44:12,503 Created temporary directory: /tmp/pip-ephem-wheel-cache-mwati14_ 2021-07-16T08:44:12,508 Created temporary directory: /tmp/pip-req-tracker-x9cppmnj 2021-07-16T08:44:12,509 Initialized build tracking at /tmp/pip-req-tracker-x9cppmnj 2021-07-16T08:44:12,509 Created build tracker: /tmp/pip-req-tracker-x9cppmnj 2021-07-16T08:44:12,509 Entered build tracker: /tmp/pip-req-tracker-x9cppmnj 2021-07-16T08:44:12,511 Created temporary directory: /tmp/pip-wheel-9e9ywjxc 2021-07-16T08:44:12,561 1 location(s) to search for versions of molmod: 2021-07-16T08:44:12,561 * https://pypi.org/simple/molmod/ 2021-07-16T08:44:12,562 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-16T08:44:12,563 Getting page https://pypi.org/simple/molmod/ 2021-07-16T08:44:12,566 Found index url https://pypi.org/simple 2021-07-16T08:44:12,880 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-16T08:44:12,881 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-16T08:44:12,882 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-16T08:44:12,882 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-16T08:44:12,883 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-16T08:44:12,883 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-16T08:44:12,884 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-16T08:44:12,884 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-16T08:44:12,885 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-16T08:44:12,896 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-16T08:44:12,897 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-16T08:44:12,897 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-16T08:44:12,898 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-16T08:44:12,899 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-16T08:44:12,900 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-16T08:44:12,900 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-16T08:44:12,901 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-16T08:44:12,979 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-16T08:44:13,008 Collecting molmod==1.4.8 2021-07-16T08:44:13,010 Created temporary directory: /tmp/pip-unpack-86jocwpz 2021-07-16T08:44:13,908 Downloading molmod-1.4.8.tar.gz (1.7 MB) 2021-07-16T08:44:15,395 Added molmod==1.4.8 from https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 to build tracker '/tmp/pip-req-tracker-x9cppmnj' 2021-07-16T08:44:15,396 Running setup.py (path:/tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/setup.py) egg_info for package molmod 2021-07-16T08:44:15,398 Created temporary directory: /tmp/pip-pip-egg-info-fj110009 2021-07-16T08:44:15,398 Running command python setup.py egg_info 2021-07-16T08:44:18,010 fatal: not a git repository (or any of the parent directories): .git 2021-07-16T08:44:18,317 Trying to get the version from git describe 2021-07-16T08:44:18,317 Trying to get the version from {} /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/molmod/version.py 2021-07-16T08:44:18,318 Version according to /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/molmod/version.py: 1.4.8 2021-07-16T08:44:18,318 running egg_info 2021-07-16T08:44:18,323 creating /tmp/pip-pip-egg-info-fj110009/molmod.egg-info 2021-07-16T08:44:18,326 writing /tmp/pip-pip-egg-info-fj110009/molmod.egg-info/PKG-INFO 2021-07-16T08:44:18,330 writing dependency_links to /tmp/pip-pip-egg-info-fj110009/molmod.egg-info/dependency_links.txt 2021-07-16T08:44:18,335 writing requirements to /tmp/pip-pip-egg-info-fj110009/molmod.egg-info/requires.txt 2021-07-16T08:44:18,337 writing top-level names to /tmp/pip-pip-egg-info-fj110009/molmod.egg-info/top_level.txt 2021-07-16T08:44:18,341 writing manifest file '/tmp/pip-pip-egg-info-fj110009/molmod.egg-info/SOURCES.txt' 2021-07-16T08:44:18,558 reading manifest file '/tmp/pip-pip-egg-info-fj110009/molmod.egg-info/SOURCES.txt' 2021-07-16T08:44:18,561 reading manifest template 'MANIFEST.in' 2021-07-16T08:44:19,274 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-16T08:44:19,428 adding license file 'LICENSE.txt' 2021-07-16T08:44:19,449 writing manifest file '/tmp/pip-pip-egg-info-fj110009/molmod.egg-info/SOURCES.txt' 2021-07-16T08:44:19,630 Source in /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3 has version 1.4.8, which satisfies requirement molmod==1.4.8 from https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 2021-07-16T08:44:19,631 Removed molmod==1.4.8 from https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 from build tracker '/tmp/pip-req-tracker-x9cppmnj' 2021-07-16T08:44:19,638 Created temporary directory: /tmp/pip-unpack-x56gm7hg 2021-07-16T08:44:19,638 Building wheels for collected packages: molmod 2021-07-16T08:44:19,644 Created temporary directory: /tmp/pip-wheel-n2x9saf9 2021-07-16T08:44:19,645 Building wheel for molmod (setup.py): started 2021-07-16T08:44:19,646 Destination directory: /tmp/pip-wheel-n2x9saf9 2021-07-16T08:44:19,646 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n2x9saf9 2021-07-16T08:44:23,276 Trying to get the version from git describe 2021-07-16T08:44:23,324 fatal: not a git repository (or any of the parent directories): .git 2021-07-16T08:44:23,326 Trying to get the version from {} /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/molmod/version.py 2021-07-16T08:44:23,327 Version according to /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/molmod/version.py: 1.4.8 2021-07-16T08:44:23,831 running bdist_wheel 2021-07-16T08:44:23,839 running build 2021-07-16T08:44:23,840 running build_py 2021-07-16T08:44:24,044 creating build 2021-07-16T08:44:24,044 creating build/lib.linux-armv7l-3.9 2021-07-16T08:44:24,045 creating build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,047 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,050 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,053 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,066 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,070 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,073 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,077 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,080 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,083 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,089 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,092 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,097 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,102 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,107 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,110 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,115 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,120 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,124 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,127 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,130 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,137 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,140 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,145 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,149 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,152 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,156 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:24,162 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,163 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,167 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,171 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,174 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,178 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,181 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,185 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,190 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,194 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,209 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,214 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,218 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,224 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,230 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,234 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,239 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,245 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,250 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,256 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,268 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,272 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,275 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,278 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,281 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-16T08:44:24,286 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,288 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,293 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,297 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,301 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,306 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,310 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,315 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,319 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,326 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,330 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,334 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,339 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,345 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,350 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,353 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,358 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,378 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,382 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,386 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-16T08:44:24,391 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,394 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,398 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,403 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,426 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,429 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,432 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,435 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,438 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,441 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,444 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,447 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,450 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,453 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,455 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,458 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,461 copying molmod/io/test/test_chk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,464 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,467 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-16T08:44:24,470 running egg_info 2021-07-16T08:44:24,511 writing molmod.egg-info/PKG-INFO 2021-07-16T08:44:24,517 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-16T08:44:24,520 writing requirements to molmod.egg-info/requires.txt 2021-07-16T08:44:24,522 writing top-level names to molmod.egg-info/top_level.txt 2021-07-16T08:44:24,546 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-16T08:44:24,566 reading manifest template 'MANIFEST.in' 2021-07-16T08:44:25,414 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-16T08:44:25,584 adding license file 'LICENSE.txt' 2021-07-16T08:44:25,609 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-16T08:44:25,656 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,659 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,663 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,667 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,671 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,674 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,686 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,690 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,694 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,699 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,702 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,706 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,716 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,720 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,723 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,727 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,732 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,735 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-16T08:44:25,739 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,741 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,748 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,753 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,766 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,782 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,786 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,791 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-16T08:44:25,797 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,799 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,804 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,821 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,824 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,828 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,832 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,861 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,865 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,869 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,874 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,878 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,882 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,886 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,890 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,894 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,897 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,901 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,905 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,910 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,914 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,927 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,931 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,935 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,939 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,953 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,956 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,960 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,965 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,969 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,974 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,978 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,981 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,984 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,988 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,992 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,996 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:25,999 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,003 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,012 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,016 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,020 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,023 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,027 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,030 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,034 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,038 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,041 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,045 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,049 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,053 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,057 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,061 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,064 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,073 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,078 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,082 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,086 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,091 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,095 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,098 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,102 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-16T08:44:26,106 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-16T08:44:26,106 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T08:44:26,108 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T08:44:26,112 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T08:44:26,116 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-16T08:44:26,120 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,121 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,125 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,128 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,132 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,135 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,139 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-16T08:44:26,142 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,143 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,157 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,161 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,165 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,168 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,172 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-16T08:44:26,175 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,177 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,181 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,185 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,189 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,193 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,197 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,201 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-16T08:44:26,204 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,206 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,209 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,212 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,216 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,220 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-16T08:44:26,232 running build_ext 2021-07-16T08:44:26,240 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-16T08:44:27,517 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-9e9ywjxc/molmod_0305d11085e240c39bbba394c24caad3/molmod/ext.pyx 2021-07-16T08:44:27,518 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-16T08:44:42,043 building 'molmod.ext' extension 2021-07-16T08:44:42,044 creating build/temp.linux-armv7l-3.9 2021-07-16T08:44:42,045 creating build/temp.linux-armv7l-3.9/molmod 2021-07-16T08:44:42,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-16T08:44:42,427 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-16T08:44:42,990 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T08:44:42,990 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T08:44:42,991 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T08:44:42,991 from molmod/ext.c:612: 2021-07-16T08:44:42,991 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T08:44:42,992 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T08:44:42,992 | ^~~~~~~ 2021-07-16T08:44:43,113 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-16T08:44:43,115 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,116 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,116 | ^~ 2021-07-16T08:44:43,118 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,118 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,119 | ^~ 2021-07-16T08:44:43,121 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,122 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,122 | ^~ 2021-07-16T08:44:43,124 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,124 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,125 | ^~ 2021-07-16T08:44:43,174 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-16T08:44:43,177 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,177 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,177 | ^~ 2021-07-16T08:44:43,181 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,181 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,181 | ^~ 2021-07-16T08:44:43,184 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,184 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-16T08:44:43,185 | ^~ 2021-07-16T08:44:43,247 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-16T08:44:43,250 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,251 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-16T08:44:43,251 | ^~ 2021-07-16T08:44:43,311 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-16T08:44:43,314 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,315 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-16T08:44:43,315 | ^~ 2021-07-16T08:44:43,373 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-16T08:44:43,377 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,377 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-16T08:44:43,378 | ^~ 2021-07-16T08:44:43,452 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-16T08:44:43,456 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-16T08:44:43,457 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-16T08:44:43,457 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T08:44:43,458 In file included from molmod/ext.c:623: 2021-07-16T08:44:43,458 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-16T08:44:43,459 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-16T08:44:43,459 | ~~~~~~^~~~~~ 2021-07-16T08:44:43,463 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-16T08:44:43,468 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,468 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-16T08:44:43,468 | ^~ 2021-07-16T08:44:43,488 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-16T08:44:43,488 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-16T08:44:43,489 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T08:44:43,489 In file included from molmod/ext.c:623: 2021-07-16T08:44:43,490 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-16T08:44:43,490 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-16T08:44:43,490 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-16T08:44:43,502 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-16T08:44:43,506 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,506 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-16T08:44:43,507 | ^~ 2021-07-16T08:44:43,512 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-16T08:44:43,513 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-16T08:44:43,513 | ^~ 2021-07-16T08:45:11,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-16T08:45:12,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-16T08:45:12,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-16T08:45:12,860 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-16T08:45:13,205 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-16T08:45:13,731 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-16T08:45:14,148 installing to build/bdist.linux-armv7l/wheel 2021-07-16T08:45:14,149 running install 2021-07-16T08:45:14,151 running install_lib 2021-07-16T08:45:14,160 creating build/bdist.linux-armv7l 2021-07-16T08:45:14,161 creating build/bdist.linux-armv7l/wheel 2021-07-16T08:45:14,165 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,166 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,172 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,176 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,180 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,184 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,187 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,190 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,193 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,199 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,202 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,206 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,209 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,214 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,217 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,220 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,224 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,227 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,296 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,300 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,304 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,308 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,312 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,315 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,319 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,323 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,330 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,333 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,337 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,340 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,344 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,347 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,353 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,354 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,358 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,362 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,364 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,369 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,372 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,386 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,389 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,392 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,395 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,397 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,399 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,402 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,406 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,408 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,412 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,416 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,419 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,423 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,426 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,430 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,432 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,435 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,439 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-16T08:45:14,443 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,448 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,451 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,456 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,457 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,462 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,465 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,469 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,473 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,477 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,480 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,484 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,487 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,492 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,495 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,499 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,500 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,503 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,507 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,510 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,513 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,517 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,520 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,523 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,527 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,529 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,532 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,535 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,539 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,542 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,544 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,547 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_chk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,552 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,554 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-16T08:45:14,557 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,560 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,565 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,568 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,571 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,574 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,579 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,581 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-16T08:45:14,584 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,587 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:14,592 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,593 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,596 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,600 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,603 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,608 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,627 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:14,634 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,635 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,662 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,666 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,670 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,687 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,691 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,694 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,699 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,702 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,705 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,710 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,715 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,728 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,735 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,738 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,742 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,745 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,749 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,756 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,795 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,798 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,805 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,808 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,811 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,814 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,817 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,820 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,823 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,826 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,830 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,833 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,844 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,847 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,849 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,852 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,855 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,858 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,863 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,865 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,868 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,871 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,874 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,877 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,880 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,883 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,886 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,907 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,915 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,918 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,922 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,936 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,940 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,943 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,946 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,950 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,953 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,987 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,989 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,992 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,995 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:14,998 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-16T08:45:15,001 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-16T08:45:15,018 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,028 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-16T08:45:15,032 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,033 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,038 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,041 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,049 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,052 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,055 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-16T08:45:15,060 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,077 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,080 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,084 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,088 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,091 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-16T08:45:15,095 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,097 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,110 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,114 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,117 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,122 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,126 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,129 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-16T08:45:15,133 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,134 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,137 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,141 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,144 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,148 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,151 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-16T08:45:15,156 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T08:45:15,157 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T08:45:15,161 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T08:45:15,164 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-16T08:45:15,178 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,181 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,186 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,191 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,195 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,199 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,205 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,209 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-16T08:45:15,213 running install_egg_info 2021-07-16T08:45:15,229 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.8-py3.9.egg-info 2021-07-16T08:45:15,259 running install_scripts 2021-07-16T08:45:15,348 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-16T08:45:15,368 creating build/bdist.linux-armv7l/wheel/molmod-1.4.8.dist-info/WHEEL 2021-07-16T08:45:15,373 creating '/tmp/pip-wheel-n2x9saf9/molmod-1.4.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T08:45:15,379 adding 'molmod/__init__.py' 2021-07-16T08:45:15,398 adding 'molmod/binning.py' 2021-07-16T08:45:15,400 adding 'molmod/bonds.py' 2021-07-16T08:45:15,404 adding 'molmod/clusters.py' 2021-07-16T08:45:15,407 adding 'molmod/common.c' 2021-07-16T08:45:15,437 adding 'molmod/common.h' 2021-07-16T08:45:15,439 adding 'molmod/constants.py' 2021-07-16T08:45:15,772 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T08:45:15,784 adding 'molmod/ext.pyx' 2021-07-16T08:45:15,787 adding 'molmod/ff.c' 2021-07-16T08:45:15,789 adding 'molmod/ff.h' 2021-07-16T08:45:15,791 adding 'molmod/ff.pxd' 2021-07-16T08:45:15,793 adding 'molmod/graphs.c' 2021-07-16T08:45:15,795 adding 'molmod/graphs.h' 2021-07-16T08:45:15,797 adding 'molmod/graphs.pxd' 2021-07-16T08:45:15,809 adding 'molmod/graphs.py' 2021-07-16T08:45:15,814 adding 'molmod/ic.py' 2021-07-16T08:45:15,817 adding 'molmod/isotopes.py' 2021-07-16T08:45:15,820 adding 'molmod/log.py' 2021-07-16T08:45:15,831 adding 'molmod/minimizer.py' 2021-07-16T08:45:15,835 adding 'molmod/molecular_graphs.py' 2021-07-16T08:45:15,837 adding 'molmod/molecules.c' 2021-07-16T08:45:15,839 adding 'molmod/molecules.h' 2021-07-16T08:45:15,841 adding 'molmod/molecules.pxd' 2021-07-16T08:45:15,844 adding 'molmod/molecules.py' 2021-07-16T08:45:15,847 adding 'molmod/pairff.py' 2021-07-16T08:45:15,849 adding 'molmod/periodic.py' 2021-07-16T08:45:15,853 adding 'molmod/quaternions.py' 2021-07-16T08:45:15,856 adding 'molmod/randomize.py' 2021-07-16T08:45:15,858 adding 'molmod/similarity.c' 2021-07-16T08:45:15,860 adding 'molmod/similarity.h' 2021-07-16T08:45:15,863 adding 'molmod/similarity.pxd' 2021-07-16T08:45:15,866 adding 'molmod/similarity.py' 2021-07-16T08:45:15,868 adding 'molmod/symmetry.py' 2021-07-16T08:45:15,870 adding 'molmod/toyff.py' 2021-07-16T08:45:15,874 adding 'molmod/transformations.py' 2021-07-16T08:45:15,877 adding 'molmod/unit_cells.c' 2021-07-16T08:45:15,879 adding 'molmod/unit_cells.h' 2021-07-16T08:45:15,881 adding 'molmod/unit_cells.pxd' 2021-07-16T08:45:15,884 adding 'molmod/unit_cells.py' 2021-07-16T08:45:15,887 adding 'molmod/units.py' 2021-07-16T08:45:15,891 adding 'molmod/utils.py' 2021-07-16T08:45:15,893 adding 'molmod/vectors.py' 2021-07-16T08:45:15,895 adding 'molmod/version.py' 2021-07-16T08:45:15,897 adding 'molmod/zmatrix.py' 2021-07-16T08:45:15,902 adding 'molmod/data/bonds.csv' 2021-07-16T08:45:15,906 adding 'molmod/data/bonds.ods' 2021-07-16T08:45:16,014 adding 'molmod/data/mass.mas03' 2021-07-16T08:45:16,115 adding 'molmod/data/nubtab03.asc' 2021-07-16T08:45:16,122 adding 'molmod/data/periodic.csv' 2021-07-16T08:45:16,127 adding 'molmod/data/periodic.ods' 2021-07-16T08:45:16,146 adding 'molmod/data/toyff_angles.txt' 2021-07-16T08:45:16,157 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-16T08:45:16,315 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-16T08:45:16,321 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-16T08:45:16,323 adding 'molmod/data/test/5ringOH.xyz' 2021-07-16T08:45:16,325 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-16T08:45:16,686 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-16T08:45:16,717 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-16T08:45:16,719 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-16T08:45:16,721 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-16T08:45:16,723 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-16T08:45:16,727 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-16T08:45:16,738 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-16T08:45:16,741 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-16T08:45:16,743 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-16T08:45:16,745 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-16T08:45:16,747 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-16T08:45:16,749 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-16T08:45:16,754 adding 'molmod/data/test/alanine.cube' 2021-07-16T08:45:16,756 adding 'molmod/data/test/argon.xyz' 2021-07-16T08:45:16,846 adding 'molmod/data/test/bartek.atrj' 2021-07-16T08:45:16,850 adding 'molmod/data/test/benzene.xyz' 2021-07-16T08:45:16,853 adding 'molmod/data/test/butane.xyz' 2021-07-16T08:45:16,856 adding 'molmod/data/test/caplayer.cml' 2021-07-16T08:45:16,984 adding 'molmod/data/test/crystal_api.out' 2021-07-16T08:45:17,017 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-16T08:45:17,020 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-16T08:45:17,022 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-16T08:45:17,024 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-16T08:45:17,041 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-16T08:45:17,044 adding 'molmod/data/test/dopamine.xyz' 2021-07-16T08:45:17,046 adding 'molmod/data/test/ethane.xyz' 2021-07-16T08:45:17,048 adding 'molmod/data/test/ethene.xyz' 2021-07-16T08:45:17,068 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-16T08:45:17,070 adding 'molmod/data/test/example.sdf' 2021-07-16T08:45:17,072 adding 'molmod/data/test/formol.xyz' 2021-07-16T08:45:17,074 adding 'molmod/data/test/funny.xyz' 2021-07-16T08:45:17,083 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-16T08:45:17,128 adding 'molmod/data/test/il2.pdb' 2021-07-16T08:45:17,133 adding 'molmod/data/test/lammps_dump.txt' 2021-07-16T08:45:17,135 adding 'molmod/data/test/lau.xyz' 2021-07-16T08:45:17,137 adding 'molmod/data/test/octane.xyz' 2021-07-16T08:45:17,139 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-16T08:45:17,141 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-16T08:45:17,144 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-16T08:45:17,146 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-16T08:45:17,148 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-16T08:45:17,150 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-16T08:45:17,153 adding 'molmod/data/test/pentapeptide.psf' 2021-07-16T08:45:17,156 adding 'molmod/data/test/precursor.xyz' 2021-07-16T08:45:17,158 adding 'molmod/data/test/probes.xyz' 2021-07-16T08:45:17,160 adding 'molmod/data/test/tea.xyz' 2021-07-16T08:45:17,161 adding 'molmod/data/test/tetra.xyz' 2021-07-16T08:45:17,185 adding 'molmod/data/test/thf.psf' 2021-07-16T08:45:17,194 adding 'molmod/data/test/thf.xyz' 2021-07-16T08:45:17,197 adding 'molmod/data/test/thf_64.cell' 2021-07-16T08:45:17,199 adding 'molmod/data/test/thf_single.xyz' 2021-07-16T08:45:17,201 adding 'molmod/data/test/tpa.xyz' 2021-07-16T08:45:17,203 adding 'molmod/data/test/water.xyz' 2021-07-16T08:45:17,205 adding 'molmod/data/test/water2.gro' 2021-07-16T08:45:17,206 adding 'molmod/data/test/water_md.inp' 2021-07-16T08:45:17,208 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-16T08:45:17,212 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-16T08:45:17,213 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-16T08:45:17,215 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-16T08:45:17,218 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-16T08:45:17,220 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-16T08:45:17,222 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-16T08:45:17,224 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-16T08:45:17,227 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-16T08:45:17,229 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-16T08:45:17,232 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-16T08:45:17,234 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-16T08:45:17,236 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-16T08:45:17,238 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-16T08:45:17,239 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-16T08:45:17,241 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-16T08:45:17,244 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-16T08:45:17,246 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-16T08:45:17,248 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-16T08:45:17,251 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-16T08:45:17,262 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-16T08:45:17,264 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-16T08:45:17,276 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-16T08:45:17,279 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-16T08:45:17,281 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-16T08:45:17,283 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-16T08:45:17,286 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-16T08:45:17,287 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-16T08:45:17,291 adding 'molmod/io/__init__.py' 2021-07-16T08:45:17,293 adding 'molmod/io/atrj.py' 2021-07-16T08:45:17,296 adding 'molmod/io/chk.py' 2021-07-16T08:45:17,299 adding 'molmod/io/cml.py' 2021-07-16T08:45:17,301 adding 'molmod/io/common.py' 2021-07-16T08:45:17,304 adding 'molmod/io/cp2k.py' 2021-07-16T08:45:17,307 adding 'molmod/io/cpmd.py' 2021-07-16T08:45:17,310 adding 'molmod/io/crystal.py' 2021-07-16T08:45:17,312 adding 'molmod/io/cube.py' 2021-07-16T08:45:17,315 adding 'molmod/io/dlpoly.py' 2021-07-16T08:45:17,318 adding 'molmod/io/fchk.py' 2021-07-16T08:45:17,320 adding 'molmod/io/gamess.py' 2021-07-16T08:45:17,322 adding 'molmod/io/gromacs.py' 2021-07-16T08:45:17,324 adding 'molmod/io/lammps.py' 2021-07-16T08:45:17,327 adding 'molmod/io/number_state.py' 2021-07-16T08:45:17,330 adding 'molmod/io/pdb.py' 2021-07-16T08:45:17,333 adding 'molmod/io/psf.py' 2021-07-16T08:45:17,336 adding 'molmod/io/sdf.py' 2021-07-16T08:45:17,338 adding 'molmod/io/xyz.py' 2021-07-16T08:45:17,341 adding 'molmod/io/test/__init__.py' 2021-07-16T08:45:17,344 adding 'molmod/io/test/test_atrj.py' 2021-07-16T08:45:17,346 adding 'molmod/io/test/test_chk.py' 2021-07-16T08:45:17,348 adding 'molmod/io/test/test_cml.py' 2021-07-16T08:45:17,350 adding 'molmod/io/test/test_cp2k.py' 2021-07-16T08:45:17,352 adding 'molmod/io/test/test_cpmd.py' 2021-07-16T08:45:17,355 adding 'molmod/io/test/test_crystal.py' 2021-07-16T08:45:17,358 adding 'molmod/io/test/test_cube.py' 2021-07-16T08:45:17,360 adding 'molmod/io/test/test_dlpoly.py' 2021-07-16T08:45:17,362 adding 'molmod/io/test/test_fchk.py' 2021-07-16T08:45:17,364 adding 'molmod/io/test/test_gamess.py' 2021-07-16T08:45:17,366 adding 'molmod/io/test/test_gromacs.py' 2021-07-16T08:45:17,368 adding 'molmod/io/test/test_lammps.py' 2021-07-16T08:45:17,370 adding 'molmod/io/test/test_number_state.py' 2021-07-16T08:45:17,372 adding 'molmod/io/test/test_pdb.py' 2021-07-16T08:45:17,374 adding 'molmod/io/test/test_psf.py' 2021-07-16T08:45:17,376 adding 'molmod/io/test/test_sdf.py' 2021-07-16T08:45:17,379 adding 'molmod/io/test/test_xyz.py' 2021-07-16T08:45:17,383 adding 'molmod/test/__init__.py' 2021-07-16T08:45:17,385 adding 'molmod/test/common.py' 2021-07-16T08:45:17,387 adding 'molmod/test/test_binning.py' 2021-07-16T08:45:17,389 adding 'molmod/test/test_clusters.py' 2021-07-16T08:45:17,392 adding 'molmod/test/test_data.py' 2021-07-16T08:45:17,394 adding 'molmod/test/test_examples.py' 2021-07-16T08:45:17,398 adding 'molmod/test/test_graphs.py' 2021-07-16T08:45:17,400 adding 'molmod/test/test_ic.py' 2021-07-16T08:45:17,404 adding 'molmod/test/test_log.py' 2021-07-16T08:45:17,406 adding 'molmod/test/test_minimizer.py' 2021-07-16T08:45:17,410 adding 'molmod/test/test_molecular_graphs.py' 2021-07-16T08:45:17,413 adding 'molmod/test/test_molecules.py' 2021-07-16T08:45:17,417 adding 'molmod/test/test_pairff.py' 2021-07-16T08:45:17,419 adding 'molmod/test/test_quaternions.py' 2021-07-16T08:45:17,421 adding 'molmod/test/test_randomize.py' 2021-07-16T08:45:17,423 adding 'molmod/test/test_similarity.py' 2021-07-16T08:45:17,426 adding 'molmod/test/test_symmetry.py' 2021-07-16T08:45:17,429 adding 'molmod/test/test_toyff.py' 2021-07-16T08:45:17,432 adding 'molmod/test/test_transformations.py' 2021-07-16T08:45:17,435 adding 'molmod/test/test_unit_cells.py' 2021-07-16T08:45:17,438 adding 'molmod/test/test_units.py' 2021-07-16T08:45:17,440 adding 'molmod/test/test_utils.py' 2021-07-16T08:45:17,442 adding 'molmod/test/test_vectors.py' 2021-07-16T08:45:17,444 adding 'molmod/test/test_zmatrix.py' 2021-07-16T08:45:17,473 adding 'molmod-1.4.8.dist-info/LICENSE.txt' 2021-07-16T08:45:17,487 adding 'molmod-1.4.8.dist-info/METADATA' 2021-07-16T08:45:17,489 adding 'molmod-1.4.8.dist-info/WHEEL' 2021-07-16T08:45:17,495 adding 'molmod-1.4.8.dist-info/top_level.txt' 2021-07-16T08:45:17,496 adding 'molmod-1.4.8.dist-info/RECORD' 2021-07-16T08:45:17,556 removing build/bdist.linux-armv7l/wheel 2021-07-16T08:45:18,400 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-16T08:45:18,433 Created wheel for molmod: filename=molmod-1.4.8-cp39-cp39-linux_armv7l.whl size=1955330 sha256=25dee3ba29f379934e072bb16b631c5058f90f9cd4a0fdc06423430487e49e27 2021-07-16T08:45:18,433 Stored in directory: /tmp/pip-ephem-wheel-cache-mwati14_/wheels/85/7c/37/89a035d972caa5944fa6ad6017f380a679191ddf8253e7c803 2021-07-16T08:45:18,459 Successfully built molmod 2021-07-16T08:45:18,559 Removed build tracker: '/tmp/pip-req-tracker-x9cppmnj'