2021-07-16T10:29:38,512 Created temporary directory: /tmp/pip-ephem-wheel-cache-h7snommp 2021-07-16T10:29:38,515 Created temporary directory: /tmp/pip-req-tracker-j3onh758 2021-07-16T10:29:38,516 Initialized build tracking at /tmp/pip-req-tracker-j3onh758 2021-07-16T10:29:38,516 Created build tracker: /tmp/pip-req-tracker-j3onh758 2021-07-16T10:29:38,516 Entered build tracker: /tmp/pip-req-tracker-j3onh758 2021-07-16T10:29:38,517 Created temporary directory: /tmp/pip-wheel-gyiwng36 2021-07-16T10:29:38,547 1 location(s) to search for versions of scilpy: 2021-07-16T10:29:38,547 * https://pypi.org/simple/scilpy/ 2021-07-16T10:29:38,547 Fetching project page and analyzing links: https://pypi.org/simple/scilpy/ 2021-07-16T10:29:38,548 Getting page https://pypi.org/simple/scilpy/ 2021-07-16T10:29:38,549 Found index url https://pypi.org/simple 2021-07-16T10:29:38,728 Found link https://files.pythonhosted.org/packages/fc/2a/50d559ef46fb2d42ab0f8fbf3da9b077d522cf242a284c950ba7508cf9d1/scilpy-0.2.dev0.tar.gz#sha256=8dd9ea2634b7d70fe527ae1094e5ff41b77f55ce06fdf2d537a9bf4db6c1ef22 (from https://pypi.org/simple/scilpy/), version: 0.2.dev0 2021-07-16T10:29:38,728 Skipping link: not a file: https://pypi.org/simple/scilpy/ 2021-07-16T10:29:38,746 Given no hashes to check 1 links for project 'scilpy': discarding no candidates 2021-07-16T10:29:38,765 Collecting scilpy==0.2.dev0 2021-07-16T10:29:38,767 Created temporary directory: /tmp/pip-unpack-7iexh8t7 2021-07-16T10:29:39,373 Downloading scilpy-0.2.dev0.tar.gz (706 kB) 2021-07-16T10:29:40,068 Added scilpy==0.2.dev0 from https://files.pythonhosted.org/packages/fc/2a/50d559ef46fb2d42ab0f8fbf3da9b077d522cf242a284c950ba7508cf9d1/scilpy-0.2.dev0.tar.gz#sha256=8dd9ea2634b7d70fe527ae1094e5ff41b77f55ce06fdf2d537a9bf4db6c1ef22 to build tracker '/tmp/pip-req-tracker-j3onh758' 2021-07-16T10:29:40,069 Running setup.py (path:/tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/setup.py) egg_info for package scilpy 2021-07-16T10:29:40,070 Created temporary directory: /tmp/pip-pip-egg-info-wu9gim1g 2021-07-16T10:29:40,070 Running command python setup.py egg_info 2021-07-16T10:29:41,525 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.2.dev' to '0.2.dev0' 2021-07-16T10:29:41,526 warnings.warn(tmpl.format(**locals())) 2021-07-16T10:29:41,613 running egg_info 2021-07-16T10:29:41,615 creating /tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info 2021-07-16T10:29:41,616 writing /tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/PKG-INFO 2021-07-16T10:29:41,618 writing dependency_links to /tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/dependency_links.txt 2021-07-16T10:29:41,620 writing requirements to /tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/requires.txt 2021-07-16T10:29:41,621 writing top-level names to /tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/top_level.txt 2021-07-16T10:29:41,623 writing manifest file '/tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/SOURCES.txt' 2021-07-16T10:29:41,812 reading manifest file '/tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/SOURCES.txt' 2021-07-16T10:29:41,814 reading manifest template 'MANIFEST.in' 2021-07-16T10:29:41,879 warning: no files found matching '*.cpp' under directory 'scilpy' 2021-07-16T10:29:41,909 adding license file 'LICENSE' 2021-07-16T10:29:41,920 writing manifest file '/tmp/pip-pip-egg-info-wu9gim1g/scilpy.egg-info/SOURCES.txt' 2021-07-16T10:29:42,010 Source in /tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9 has version 0.2.dev0, which satisfies requirement scilpy==0.2.dev0 from https://files.pythonhosted.org/packages/fc/2a/50d559ef46fb2d42ab0f8fbf3da9b077d522cf242a284c950ba7508cf9d1/scilpy-0.2.dev0.tar.gz#sha256=8dd9ea2634b7d70fe527ae1094e5ff41b77f55ce06fdf2d537a9bf4db6c1ef22 2021-07-16T10:29:42,011 Removed scilpy==0.2.dev0 from https://files.pythonhosted.org/packages/fc/2a/50d559ef46fb2d42ab0f8fbf3da9b077d522cf242a284c950ba7508cf9d1/scilpy-0.2.dev0.tar.gz#sha256=8dd9ea2634b7d70fe527ae1094e5ff41b77f55ce06fdf2d537a9bf4db6c1ef22 from build tracker '/tmp/pip-req-tracker-j3onh758' 2021-07-16T10:29:42,015 Created temporary directory: /tmp/pip-unpack-gcbvj0oz 2021-07-16T10:29:42,016 Building wheels for collected packages: scilpy 2021-07-16T10:29:42,019 Created temporary directory: /tmp/pip-wheel-b41y87hm 2021-07-16T10:29:42,020 Building wheel for scilpy (setup.py): started 2021-07-16T10:29:42,020 Destination directory: /tmp/pip-wheel-b41y87hm 2021-07-16T10:29:42,020 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-b41y87hm 2021-07-16T10:29:43,479 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.2.dev' to '0.2.dev0' 2021-07-16T10:29:43,480 warnings.warn(tmpl.format(**locals())) 2021-07-16T10:29:43,585 running bdist_wheel 2021-07-16T10:29:43,592 running build 2021-07-16T10:29:43,592 running build_py 2021-07-16T10:29:43,735 creating build 2021-07-16T10:29:43,735 creating build/lib.linux-armv7l-3.9 2021-07-16T10:29:43,737 creating build/lib.linux-armv7l-3.9/scilpy 2021-07-16T10:29:43,740 copying scilpy/__init__.py -> build/lib.linux-armv7l-3.9/scilpy 2021-07-16T10:29:43,743 copying scilpy/version.py -> build/lib.linux-armv7l-3.9/scilpy 2021-07-16T10:29:43,746 creating build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,747 copying scilpy/gradientsampling/gen_gradient_sampling.py -> build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,750 copying scilpy/gradientsampling/save_gradient_sampling.py -> build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,753 copying scilpy/gradientsampling/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,755 copying scilpy/gradientsampling/optimize_gradient_sampling.py -> build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,758 copying scilpy/gradientsampling/multiple_shell_energy.py -> build/lib.linux-armv7l-3.9/scilpy/gradientsampling 2021-07-16T10:29:43,763 creating build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,764 copying scilpy/segment/voting_scheme.py -> build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,769 copying scilpy/segment/streamlines.py -> build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,773 copying scilpy/segment/recobundlesx.py -> build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,776 copying scilpy/segment/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,779 copying scilpy/segment/models.py -> build/lib.linux-armv7l-3.9/scilpy/segment 2021-07-16T10:29:43,783 creating build/lib.linux-armv7l-3.9/scilpy/viz 2021-07-16T10:29:43,785 copying scilpy/viz/screenshot.py -> build/lib.linux-armv7l-3.9/scilpy/viz 2021-07-16T10:29:43,788 copying scilpy/viz/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/viz 2021-07-16T10:29:43,790 copying scilpy/viz/gradient_sampling.py -> build/lib.linux-armv7l-3.9/scilpy/viz 2021-07-16T10:29:43,794 creating build/lib.linux-armv7l-3.9/scilpy/tracking 2021-07-16T10:29:43,796 copying scilpy/tracking/tools.py -> build/lib.linux-armv7l-3.9/scilpy/tracking 2021-07-16T10:29:43,799 copying scilpy/tracking/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/tracking 2021-07-16T10:29:43,802 creating build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,804 copying scilpy/io/fetcher.py -> build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,807 copying scilpy/io/image.py -> build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,810 copying scilpy/io/utils.py -> build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,814 copying scilpy/io/streamlines.py -> build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,817 copying scilpy/io/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/io 2021-07-16T10:29:43,820 creating build/lib.linux-armv7l-3.9/scilpy/preprocessing 2021-07-16T10:29:43,821 copying scilpy/preprocessing/distortion_correction.py -> build/lib.linux-armv7l-3.9/scilpy/preprocessing 2021-07-16T10:29:43,826 copying scilpy/preprocessing/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/preprocessing 2021-07-16T10:29:43,829 creating build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,831 copying scilpy/utils/image.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,834 copying scilpy/utils/nibabel_tools.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,837 copying scilpy/utils/filenames.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,840 copying scilpy/utils/bvec_bval_tools.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,844 copying scilpy/utils/streamlines.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,848 copying scilpy/utils/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,851 copying scilpy/utils/metrics_tools.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,854 copying scilpy/utils/util.py -> build/lib.linux-armv7l-3.9/scilpy/utils 2021-07-16T10:29:43,858 creating build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,859 copying scilpy/image/reslice.py -> build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,862 copying scilpy/image/resample_volume.py -> build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,866 copying scilpy/image/utils.py -> build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,869 copying scilpy/image/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,871 copying scilpy/image/operations.py -> build/lib.linux-armv7l-3.9/scilpy/image 2021-07-16T10:29:43,876 creating build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,877 copying scilpy/reconst/fodf.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,881 copying scilpy/reconst/multi_processes.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,884 copying scilpy/reconst/frf.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,887 copying scilpy/reconst/utils.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,890 copying scilpy/reconst/afd_along_streamlines.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,893 copying scilpy/reconst/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,895 copying scilpy/reconst/raw_signal.py -> build/lib.linux-armv7l-3.9/scilpy/reconst 2021-07-16T10:29:43,899 creating build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,901 copying scilpy/tractanalysis/tools.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,904 copying scilpy/tractanalysis/features.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,907 copying scilpy/tractanalysis/todi.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,911 copying scilpy/tractanalysis/distance_to_centroid.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,914 copying scilpy/tractanalysis/todi_util.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,916 copying scilpy/tractanalysis/__init__.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,918 copying scilpy/tractanalysis/reproducibility_measures.py -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:43,922 running egg_info 2021-07-16T10:29:43,941 writing scilpy.egg-info/PKG-INFO 2021-07-16T10:29:43,944 writing dependency_links to scilpy.egg-info/dependency_links.txt 2021-07-16T10:29:43,947 writing requirements to scilpy.egg-info/requires.txt 2021-07-16T10:29:43,948 writing top-level names to scilpy.egg-info/top_level.txt 2021-07-16T10:29:43,999 reading manifest file 'scilpy.egg-info/SOURCES.txt' 2021-07-16T10:29:44,006 reading manifest template 'MANIFEST.in' 2021-07-16T10:29:44,115 warning: no files found matching '*.cpp' under directory 'scilpy' 2021-07-16T10:29:44,168 adding license file 'LICENSE' 2021-07-16T10:29:44,185 writing manifest file 'scilpy.egg-info/SOURCES.txt' 2021-07-16T10:29:44,194 copying scilpy/tractanalysis/grid_intersections.c -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,220 copying scilpy/tractanalysis/grid_intersections.pyx -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,223 copying scilpy/tractanalysis/quick_tools.c -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,255 copying scilpy/tractanalysis/quick_tools.pyx -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,258 copying scilpy/tractanalysis/streamlines_metrics.c -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,286 copying scilpy/tractanalysis/streamlines_metrics.pyx -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,289 copying scilpy/tractanalysis/uncompress.c -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,323 copying scilpy/tractanalysis/uncompress.pyx -> build/lib.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:29:44,335 running build_ext 2021-07-16T10:29:45,245 Compiling scilpy/tractanalysis/uncompress.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T10:29:45,246 Compiling scilpy/tractanalysis/quick_tools.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T10:29:45,246 Compiling scilpy/tractanalysis/grid_intersections.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T10:29:45,246 Compiling scilpy/tractanalysis/streamlines_metrics.pyx because it changed. 2021-07-16T10:29:45,247 [1/4] Cythonizing scilpy/tractanalysis/streamlines_metrics.pyx 2021-07-16T10:29:45,390 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/scilpy/tractanalysis/streamlines_metrics.pyx 2021-07-16T10:29:45,391 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-16T10:29:52,049 [2/4] Cythonizing scilpy/tractanalysis/grid_intersections.pyx 2021-07-16T10:29:52,055 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/scilpy/tractanalysis/grid_intersections.pyx 2021-07-16T10:29:52,055 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-16T10:29:56,120 warning: scilpy/tractanalysis/grid_intersections.pyx:270:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:29:56,120 warning: scilpy/tractanalysis/grid_intersections.pyx:271:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:29:56,120 warning: scilpy/tractanalysis/grid_intersections.pyx:272:61: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:29:56,123 warning: scilpy/tractanalysis/grid_intersections.pyx:297:38: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:29:56,123 warning: scilpy/tractanalysis/grid_intersections.pyx:297:65: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:29:58,798 [3/4] Cythonizing scilpy/tractanalysis/quick_tools.pyx 2021-07-16T10:29:58,805 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-gyiwng36/scilpy_5b422f98d12f446499d95003b1923ab9/scilpy/tractanalysis/quick_tools.pyx 2021-07-16T10:29:58,805 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-16T10:30:05,234 [4/4] Cythonizing scilpy/tractanalysis/uncompress.pyx 2021-07-16T10:30:09,449 warning: scilpy/tractanalysis/uncompress.pyx:175:47: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:09,449 warning: scilpy/tractanalysis/uncompress.pyx:175:74: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:09,467 warning: scilpy/tractanalysis/uncompress.pyx:340:38: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:09,467 warning: scilpy/tractanalysis/uncompress.pyx:340:65: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:09,467 warning: scilpy/tractanalysis/uncompress.pyx:342:42: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:09,468 warning: scilpy/tractanalysis/uncompress.pyx:342:73: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-16T10:30:12,439 building 'scilpy.tractanalysis.uncompress' extension 2021-07-16T10:30:12,440 creating build/temp.linux-armv7l-3.9 2021-07-16T10:30:12,440 creating build/temp.linux-armv7l-3.9/scilpy 2021-07-16T10:30:12,441 creating build/temp.linux-armv7l-3.9/scilpy/tractanalysis 2021-07-16T10:30:12,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/uncompress.c -o build/temp.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.o 2021-07-16T10:30:12,849 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T10:30:12,849 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T10:30:12,849 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T10:30:12,849 from scilpy/tractanalysis/uncompress.c:626: 2021-07-16T10:30:12,849 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T10:30:12,849 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T10:30:12,850 | ^~~~~~~ 2021-07-16T10:30:26,644 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.o -o build/lib.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.cpython-39-arm-linux-gnueabihf.so 2021-07-16T10:30:26,818 building 'scilpy.tractanalysis.quick_tools' extension 2021-07-16T10:30:26,819 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/quick_tools.c -o build/temp.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.o 2021-07-16T10:30:27,200 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T10:30:27,201 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T10:30:27,201 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T10:30:27,201 from scilpy/tractanalysis/quick_tools.c:625: 2021-07-16T10:30:27,201 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T10:30:27,201 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T10:30:27,201 | ^~~~~~~ 2021-07-16T10:30:38,569 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.o -o build/lib.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so 2021-07-16T10:30:38,738 building 'scilpy.tractanalysis.grid_intersections' extension 2021-07-16T10:30:38,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/grid_intersections.c -o build/temp.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.o 2021-07-16T10:30:39,166 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T10:30:39,166 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T10:30:39,166 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T10:30:39,166 from scilpy/tractanalysis/grid_intersections.c:626: 2021-07-16T10:30:39,166 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T10:30:39,167 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T10:30:39,167 | ^~~~~~~ 2021-07-16T10:30:51,984 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.o -o build/lib.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so 2021-07-16T10:30:52,150 building 'scilpy.tractanalysis.streamlines_metrics' extension 2021-07-16T10:30:52,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scilpy/tractanalysis/streamlines_metrics.c -o build/temp.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.o 2021-07-16T10:30:52,545 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T10:30:52,545 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T10:30:52,545 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T10:30:52,546 from scilpy/tractanalysis/streamlines_metrics.c:625: 2021-07-16T10:30:52,546 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T10:30:52,546 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T10:30:52,546 | ^~~~~~~ 2021-07-16T10:31:06,460 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.o -o build/lib.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so 2021-07-16T10:31:06,640 running build_scripts 2021-07-16T10:31:06,641 creating build/scripts-3.9 2021-07-16T10:31:06,642 copying and adjusting scripts/scil_compute_ssst_frf.py -> build/scripts-3.9 2021-07-16T10:31:06,645 copying and adjusting scripts/scil_compute_centroid.py -> build/scripts-3.9 2021-07-16T10:31:06,647 copying and adjusting scripts/scil_convert_surface.py -> build/scripts-3.9 2021-07-16T10:31:06,649 copying and adjusting scripts/scil_run_nlmeans.py -> build/scripts-3.9 2021-07-16T10:31:06,650 copying and adjusting scripts/scil_recognize_single_bundle.py -> build/scripts-3.9 2021-07-16T10:31:06,653 copying and adjusting scripts/scil_assign_color_to_trk.py -> build/scripts-3.9 2021-07-16T10:31:06,654 copying and adjusting scripts/scil_visualize_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,657 copying and adjusting scripts/scil_verify_space_attributes_compatibility.py -> build/scripts-3.9 2021-07-16T10:31:06,659 copying and adjusting scripts/scil_remove_outliers_ransac.py -> build/scripts-3.9 2021-07-16T10:31:06,660 copying and adjusting scripts/scil_visualize_seeds.py -> build/scripts-3.9 2021-07-16T10:31:06,662 copying and adjusting scripts/scil_validate_bids.py -> build/scripts-3.9 2021-07-16T10:31:06,665 copying and adjusting scripts/scil_compute_sh_from_signal.py -> build/scripts-3.9 2021-07-16T10:31:06,666 copying and adjusting scripts/scil_compute_local_tracking.py -> build/scripts-3.9 2021-07-16T10:31:06,669 copying and adjusting scripts/scil_filter_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,671 copying and adjusting scripts/scil_compute_hdf5_average_density_map.py -> build/scripts-3.9 2021-07-16T10:31:06,673 copying and adjusting scripts/scil_resample_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,674 copying and adjusting scripts/scil_shuffle_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,676 copying and adjusting scripts/scil_convert_gradients_mrtrix_to_fsl.py -> build/scripts-3.9 2021-07-16T10:31:06,677 copying and adjusting scripts/scil_compute_mean_fixel_afd_from_hdf5.py -> build/scripts-3.9 2021-07-16T10:31:06,680 copying and adjusting scripts/scil_extract_dwi_shell.py -> build/scripts-3.9 2021-07-16T10:31:06,681 copying and adjusting scripts/scil_extract_b0.py -> build/scripts-3.9 2021-07-16T10:31:06,683 copying and adjusting scripts/scil_evaluate_bundles_binary_classification_measures.py -> build/scripts-3.9 2021-07-16T10:31:06,686 copying and adjusting scripts/scil_remove_invalid_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,687 copying and adjusting scripts/scil_apply_transform_to_tractogram.py -> build/scripts-3.9 2021-07-16T10:31:06,689 copying and adjusting scripts/scil_prepare_topup_command.py -> build/scripts-3.9 2021-07-16T10:31:06,691 copying and adjusting scripts/scil_smooth_surface.py -> build/scripts-3.9 2021-07-16T10:31:06,693 copying and adjusting scripts/scil_flip_volume.py -> build/scripts-3.9 2021-07-16T10:31:06,695 copying and adjusting scripts/scil_screenshot_dti.py -> build/scripts-3.9 2021-07-16T10:31:06,697 copying and adjusting scripts/scil_apply_bias_field_on_dwi.py -> build/scripts-3.9 2021-07-16T10:31:06,699 copying and adjusting scripts/scil_filter_streamlines_by_length.py -> build/scripts-3.9 2021-07-16T10:31:06,700 copying and adjusting scripts/scil_compute_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,703 copying and adjusting scripts/scil_generate_priors_from_bundle.py -> build/scripts-3.9 2021-07-16T10:31:06,705 copying and adjusting scripts/scil_get_subset_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,707 copying and adjusting scripts/scil_compute_maps_for_particle_filter_tracking.py -> build/scripts-3.9 2021-07-16T10:31:06,708 copying and adjusting scripts/scil_print_connectivity_filenames.py -> build/scripts-3.9 2021-07-16T10:31:06,710 copying and adjusting scripts/scil_convert_tractogram.py -> build/scripts-3.9 2021-07-16T10:31:06,711 copying and adjusting scripts/scil_image_math.py -> build/scripts-3.9 2021-07-16T10:31:06,714 copying and adjusting scripts/scil_convert_json_to_xlsx.py -> build/scripts-3.9 2021-07-16T10:31:06,717 copying and adjusting scripts/scil_plot_mean_std_per_point.py -> build/scripts-3.9 2021-07-16T10:31:06,718 copying and adjusting scripts/scil_count_non_zero_voxels.py -> build/scripts-3.9 2021-07-16T10:31:06,720 copying and adjusting scripts/scil_label_and_distance_maps.py -> build/scripts-3.9 2021-07-16T10:31:06,722 copying and adjusting scripts/scil_connectivity_math.py -> build/scripts-3.9 2021-07-16T10:31:06,724 copying and adjusting scripts/scil_remove_labels.py -> build/scripts-3.9 2021-07-16T10:31:06,725 copying and adjusting scripts/scil_apply_transform_to_hdf5.py -> build/scripts-3.9 2021-07-16T10:31:06,727 copying and adjusting scripts/scil_register_tractogram.py -> build/scripts-3.9 2021-07-16T10:31:06,729 copying and adjusting scripts/scil_generate_gradient_sampling.py -> build/scripts-3.9 2021-07-16T10:31:06,731 copying and adjusting scripts/scil_prepare_eddy_command.py -> build/scripts-3.9 2021-07-16T10:31:06,733 copying and adjusting scripts/scil_evaluate_bundles_pairwise_agreement_measures.py -> build/scripts-3.9 2021-07-16T10:31:06,736 copying and adjusting scripts/scil_bundle_mean_std.py -> build/scripts-3.9 2021-07-16T10:31:06,738 copying and adjusting scripts/scil_convert_gradients_fsl_to_mrtrix.py -> build/scripts-3.9 2021-07-16T10:31:06,739 copying and adjusting scripts/scil_compute_freewater.py -> build/scripts-3.9 2021-07-16T10:31:06,741 copying and adjusting scripts/scil_screenshot_bundle.py -> build/scripts-3.9 2021-07-16T10:31:06,743 copying and adjusting scripts/scil_outlier_rejection.py -> build/scripts-3.9 2021-07-16T10:31:06,745 copying and adjusting scripts/scil_bundle_volume_per_label.py -> build/scripts-3.9 2021-07-16T10:31:06,747 copying and adjusting scripts/scil_merge_sh.py -> build/scripts-3.9 2021-07-16T10:31:06,748 copying and adjusting scripts/scil_detect_streamlines_loops.py -> build/scripts-3.9 2021-07-16T10:31:06,750 copying and adjusting scripts/scil_compute_qbx.py -> build/scripts-3.9 2021-07-16T10:31:06,752 copying and adjusting scripts/scil_add_tracking_mask_to_pft_maps.py -> build/scripts-3.9 2021-07-16T10:31:06,754 copying and adjusting scripts/scil_smooth_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,756 copying and adjusting scripts/scil_search_keywords.py -> build/scripts-3.9 2021-07-16T10:31:06,758 copying and adjusting scripts/scil_compute_mean_frf.py -> build/scripts-3.9 2021-07-16T10:31:06,759 copying and adjusting scripts/scil_compute_seed_density_map.py -> build/scripts-3.9 2021-07-16T10:31:06,761 copying and adjusting scripts/scil_evaluate_bundles_individual_measures.py -> build/scripts-3.9 2021-07-16T10:31:06,763 copying and adjusting scripts/scil_compute_fodf_metrics.py -> build/scripts-3.9 2021-07-16T10:31:06,766 copying and adjusting scripts/scil_compute_bundle_profiles.py -> build/scripts-3.9 2021-07-16T10:31:06,768 copying and adjusting scripts/scil_endpoints_map.py -> build/scripts-3.9 2021-07-16T10:31:06,769 copying and adjusting scripts/scil_compare_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,772 copying and adjusting scripts/scil_compute_NODDI_priors.py -> build/scripts-3.9 2021-07-16T10:31:06,774 copying and adjusting scripts/scil_count_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,775 copying and adjusting scripts/scil_apply_transform_to_image.py -> build/scripts-3.9 2021-07-16T10:31:06,777 copying and adjusting scripts/scil_compute_NODDI.py -> build/scripts-3.9 2021-07-16T10:31:06,779 copying and adjusting scripts/scil_bundle_volume.py -> build/scripts-3.9 2021-07-16T10:31:06,781 copying and adjusting scripts/scil_compute_pft.py -> build/scripts-3.9 2021-07-16T10:31:06,783 copying and adjusting scripts/scil_save_connections_from_hdf5.py -> build/scripts-3.9 2021-07-16T10:31:06,785 copying and adjusting scripts/scil_split_volume_by_labels.py -> build/scripts-3.9 2021-07-16T10:31:06,786 copying and adjusting scripts/scil_streamlines_math.py -> build/scripts-3.9 2021-07-16T10:31:06,789 copying and adjusting scripts/scil_flip_gradients.py -> build/scripts-3.9 2021-07-16T10:31:06,790 copying and adjusting scripts/scil_compute_mean_fixel_afd_from_bundles.py -> build/scripts-3.9 2021-07-16T10:31:06,792 copying and adjusting scripts/scil_clean_qbx_clusters.py -> build/scripts-3.9 2021-07-16T10:31:06,794 copying and adjusting scripts/scil_flip_surface.py -> build/scripts-3.9 2021-07-16T10:31:06,796 copying and adjusting scripts/scil_merge_json.py -> build/scripts-3.9 2021-07-16T10:31:06,797 copying and adjusting scripts/scil_crop_volume.py -> build/scripts-3.9 2021-07-16T10:31:06,799 copying and adjusting scripts/scil_compute_dti_metrics.py -> build/scripts-3.9 2021-07-16T10:31:06,802 copying and adjusting scripts/scil_normalize_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,804 copying and adjusting scripts/scil_run_commit.py -> build/scripts-3.9 2021-07-16T10:31:06,807 copying and adjusting scripts/scil_filter_tractogram.py -> build/scripts-3.9 2021-07-16T10:31:06,809 copying and adjusting scripts/scil_apply_transform_to_surface.py -> build/scripts-3.9 2021-07-16T10:31:06,811 copying and adjusting scripts/scil_split_volume_by_ids.py -> build/scripts-3.9 2021-07-16T10:31:06,813 copying and adjusting scripts/scil_remove_similar_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,815 copying and adjusting scripts/scil_print_header.py -> build/scripts-3.9 2021-07-16T10:31:06,817 copying and adjusting scripts/scil_compute_metrics_stats_in_ROI.py -> build/scripts-3.9 2021-07-16T10:31:06,819 copying and adjusting scripts/scil_convert_rgb.py -> build/scripts-3.9 2021-07-16T10:31:06,820 copying and adjusting scripts/scil_evaluate_connectivity_measures.py -> build/scripts-3.9 2021-07-16T10:31:06,823 copying and adjusting scripts/scil_reshape_to_reference.py -> build/scripts-3.9 2021-07-16T10:31:06,824 copying and adjusting scripts/scil_compute_streamlines_density_map.py -> build/scripts-3.9 2021-07-16T10:31:06,826 copying and adjusting scripts/scil_perform_majority_vote.py -> build/scripts-3.9 2021-07-16T10:31:06,828 copying and adjusting scripts/scil_decompose_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,831 copying and adjusting scripts/scil_uniformize_streamlines_endpoints.py -> build/scripts-3.9 2021-07-16T10:31:06,832 copying and adjusting scripts/scil_flip_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,834 copying and adjusting scripts/scil_convert_sh_basis.py -> build/scripts-3.9 2021-07-16T10:31:06,836 copying and adjusting scripts/scil_visualize_gradients.py -> build/scripts-3.9 2021-07-16T10:31:06,838 copying and adjusting scripts/scil_endpoints_metric.py -> build/scripts-3.9 2021-07-16T10:31:06,840 copying and adjusting scripts/scil_resample_volume.py -> build/scripts-3.9 2021-07-16T10:31:06,842 copying and adjusting scripts/scil_split_tractograms.py -> build/scripts-3.9 2021-07-16T10:31:06,843 copying and adjusting scripts/scil_set_response_function.py -> build/scripts-3.9 2021-07-16T10:31:06,845 copying and adjusting scripts/scil_bundle_voxel_label_map.py -> build/scripts-3.9 2021-07-16T10:31:06,847 copying and adjusting scripts/scil_reorder_dwi_philips.py -> build/scripts-3.9 2021-07-16T10:31:06,848 copying and adjusting scripts/scil_compress_streamlines.py -> build/scripts-3.9 2021-07-16T10:31:06,850 copying and adjusting scripts/scil_dilate_labels.py -> build/scripts-3.9 2021-07-16T10:31:06,852 copying and adjusting scripts/scil_compute_streamlines_length_stats.py -> build/scripts-3.9 2021-07-16T10:31:06,854 copying and adjusting scripts/scil_reorder_connectivity.py -> build/scripts-3.9 2021-07-16T10:31:06,856 copying and adjusting scripts/scil_compute_kurtosis_metrics.py -> build/scripts-3.9 2021-07-16T10:31:06,858 copying and adjusting scripts/scil_bundle_mean_std_per_point.py -> build/scripts-3.9 2021-07-16T10:31:06,860 copying and adjusting scripts/scil_visualize_bundles_mosaic.py -> build/scripts-3.9 2021-07-16T10:31:06,863 copying and adjusting scripts/scil_compute_todi.py -> build/scripts-3.9 2021-07-16T10:31:06,865 copying and adjusting scripts/scil_compute_fodf_max_in_ventricles.py -> build/scripts-3.9 2021-07-16T10:31:06,867 copying and adjusting scripts/scil_recognize_multi_bundles.py -> build/scripts-3.9 2021-07-16T10:31:06,869 copying and adjusting scripts/scil_combine_labels.py -> build/scripts-3.9 2021-07-16T10:31:06,871 copying and adjusting scripts/scil_compute_fodf.py -> build/scripts-3.9 2021-07-16T10:31:06,872 changing mode of build/scripts-3.9/scil_compute_ssst_frf.py from 644 to 755 2021-07-16T10:31:06,873 changing mode of build/scripts-3.9/scil_compute_centroid.py from 644 to 755 2021-07-16T10:31:06,873 changing mode of build/scripts-3.9/scil_convert_surface.py from 644 to 755 2021-07-16T10:31:06,874 changing mode of build/scripts-3.9/scil_run_nlmeans.py from 644 to 755 2021-07-16T10:31:06,874 changing mode of build/scripts-3.9/scil_recognize_single_bundle.py from 644 to 755 2021-07-16T10:31:06,874 changing mode of build/scripts-3.9/scil_assign_color_to_trk.py from 644 to 755 2021-07-16T10:31:06,874 changing mode of build/scripts-3.9/scil_visualize_connectivity.py from 644 to 755 2021-07-16T10:31:06,875 changing mode of build/scripts-3.9/scil_verify_space_attributes_compatibility.py from 644 to 755 2021-07-16T10:31:06,875 changing mode of build/scripts-3.9/scil_remove_outliers_ransac.py from 644 to 755 2021-07-16T10:31:06,875 changing mode of build/scripts-3.9/scil_visualize_seeds.py from 644 to 755 2021-07-16T10:31:06,876 changing mode of build/scripts-3.9/scil_validate_bids.py from 644 to 755 2021-07-16T10:31:06,876 changing mode of build/scripts-3.9/scil_compute_sh_from_signal.py from 644 to 755 2021-07-16T10:31:06,876 changing mode of build/scripts-3.9/scil_compute_local_tracking.py from 644 to 755 2021-07-16T10:31:06,876 changing mode of build/scripts-3.9/scil_filter_connectivity.py from 644 to 755 2021-07-16T10:31:06,877 changing mode of build/scripts-3.9/scil_compute_hdf5_average_density_map.py from 644 to 755 2021-07-16T10:31:06,877 changing mode of build/scripts-3.9/scil_resample_streamlines.py from 644 to 755 2021-07-16T10:31:06,877 changing mode of build/scripts-3.9/scil_shuffle_streamlines.py from 644 to 755 2021-07-16T10:31:06,877 changing mode of build/scripts-3.9/scil_convert_gradients_mrtrix_to_fsl.py from 644 to 755 2021-07-16T10:31:06,878 changing mode of build/scripts-3.9/scil_compute_mean_fixel_afd_from_hdf5.py from 644 to 755 2021-07-16T10:31:06,878 changing mode of build/scripts-3.9/scil_extract_dwi_shell.py from 644 to 755 2021-07-16T10:31:06,878 changing mode of build/scripts-3.9/scil_extract_b0.py from 644 to 755 2021-07-16T10:31:06,879 changing mode of build/scripts-3.9/scil_evaluate_bundles_binary_classification_measures.py from 644 to 755 2021-07-16T10:31:06,879 changing mode of build/scripts-3.9/scil_remove_invalid_streamlines.py from 644 to 755 2021-07-16T10:31:06,879 changing mode of build/scripts-3.9/scil_apply_transform_to_tractogram.py from 644 to 755 2021-07-16T10:31:06,879 changing mode of build/scripts-3.9/scil_prepare_topup_command.py from 644 to 755 2021-07-16T10:31:06,880 changing mode of build/scripts-3.9/scil_smooth_surface.py from 644 to 755 2021-07-16T10:31:06,880 changing mode of build/scripts-3.9/scil_flip_volume.py from 644 to 755 2021-07-16T10:31:06,880 changing mode of build/scripts-3.9/scil_screenshot_dti.py from 644 to 755 2021-07-16T10:31:06,881 changing mode of build/scripts-3.9/scil_apply_bias_field_on_dwi.py from 644 to 755 2021-07-16T10:31:06,881 changing mode of build/scripts-3.9/scil_filter_streamlines_by_length.py from 644 to 755 2021-07-16T10:31:06,881 changing mode of build/scripts-3.9/scil_compute_connectivity.py from 644 to 755 2021-07-16T10:31:06,881 changing mode of build/scripts-3.9/scil_generate_priors_from_bundle.py from 644 to 755 2021-07-16T10:31:06,882 changing mode of build/scripts-3.9/scil_get_subset_streamlines.py from 644 to 755 2021-07-16T10:31:06,882 changing mode of build/scripts-3.9/scil_compute_maps_for_particle_filter_tracking.py from 644 to 755 2021-07-16T10:31:06,882 changing mode of build/scripts-3.9/scil_print_connectivity_filenames.py from 644 to 755 2021-07-16T10:31:06,882 changing mode of build/scripts-3.9/scil_convert_tractogram.py from 644 to 755 2021-07-16T10:31:06,883 changing mode of build/scripts-3.9/scil_image_math.py from 644 to 755 2021-07-16T10:31:06,883 changing mode of build/scripts-3.9/scil_convert_json_to_xlsx.py from 644 to 755 2021-07-16T10:31:06,883 changing mode of build/scripts-3.9/scil_plot_mean_std_per_point.py from 644 to 755 2021-07-16T10:31:06,884 changing mode of build/scripts-3.9/scil_count_non_zero_voxels.py from 644 to 755 2021-07-16T10:31:06,884 changing mode of build/scripts-3.9/scil_label_and_distance_maps.py from 644 to 755 2021-07-16T10:31:06,884 changing mode of build/scripts-3.9/scil_connectivity_math.py from 644 to 755 2021-07-16T10:31:06,884 changing mode of build/scripts-3.9/scil_remove_labels.py from 644 to 755 2021-07-16T10:31:06,885 changing mode of build/scripts-3.9/scil_apply_transform_to_hdf5.py from 644 to 755 2021-07-16T10:31:06,885 changing mode of build/scripts-3.9/scil_register_tractogram.py from 644 to 755 2021-07-16T10:31:06,885 changing mode of build/scripts-3.9/scil_generate_gradient_sampling.py from 644 to 755 2021-07-16T10:31:06,886 changing mode of build/scripts-3.9/scil_prepare_eddy_command.py from 644 to 755 2021-07-16T10:31:06,886 changing mode of build/scripts-3.9/scil_evaluate_bundles_pairwise_agreement_measures.py from 644 to 755 2021-07-16T10:31:06,886 changing mode of build/scripts-3.9/scil_bundle_mean_std.py from 644 to 755 2021-07-16T10:31:06,886 changing mode of build/scripts-3.9/scil_convert_gradients_fsl_to_mrtrix.py from 644 to 755 2021-07-16T10:31:06,887 changing mode of build/scripts-3.9/scil_compute_freewater.py from 644 to 755 2021-07-16T10:31:06,887 changing mode of build/scripts-3.9/scil_screenshot_bundle.py from 644 to 755 2021-07-16T10:31:06,887 changing mode of build/scripts-3.9/scil_outlier_rejection.py from 644 to 755 2021-07-16T10:31:06,887 changing mode of build/scripts-3.9/scil_bundle_volume_per_label.py from 644 to 755 2021-07-16T10:31:06,888 changing mode of build/scripts-3.9/scil_merge_sh.py from 644 to 755 2021-07-16T10:31:06,888 changing mode of build/scripts-3.9/scil_detect_streamlines_loops.py from 644 to 755 2021-07-16T10:31:06,888 changing mode of build/scripts-3.9/scil_compute_qbx.py from 644 to 755 2021-07-16T10:31:06,889 changing mode of build/scripts-3.9/scil_add_tracking_mask_to_pft_maps.py from 644 to 755 2021-07-16T10:31:06,889 changing mode of build/scripts-3.9/scil_smooth_streamlines.py from 644 to 755 2021-07-16T10:31:06,889 changing mode of build/scripts-3.9/scil_search_keywords.py from 644 to 755 2021-07-16T10:31:06,889 changing mode of build/scripts-3.9/scil_compute_mean_frf.py from 644 to 755 2021-07-16T10:31:06,890 changing mode of build/scripts-3.9/scil_compute_seed_density_map.py from 644 to 755 2021-07-16T10:31:06,890 changing mode of build/scripts-3.9/scil_evaluate_bundles_individual_measures.py from 644 to 755 2021-07-16T10:31:06,890 changing mode of build/scripts-3.9/scil_compute_fodf_metrics.py from 644 to 755 2021-07-16T10:31:06,890 changing mode of build/scripts-3.9/scil_compute_bundle_profiles.py from 644 to 755 2021-07-16T10:31:06,891 changing mode of build/scripts-3.9/scil_endpoints_map.py from 644 to 755 2021-07-16T10:31:06,891 changing mode of build/scripts-3.9/scil_compare_connectivity.py from 644 to 755 2021-07-16T10:31:06,891 changing mode of build/scripts-3.9/scil_compute_NODDI_priors.py from 644 to 755 2021-07-16T10:31:06,892 changing mode of build/scripts-3.9/scil_count_streamlines.py from 644 to 755 2021-07-16T10:31:06,892 changing mode of build/scripts-3.9/scil_apply_transform_to_image.py from 644 to 755 2021-07-16T10:31:06,892 changing mode of build/scripts-3.9/scil_compute_NODDI.py from 644 to 755 2021-07-16T10:31:06,892 changing mode of build/scripts-3.9/scil_bundle_volume.py from 644 to 755 2021-07-16T10:31:06,893 changing mode of build/scripts-3.9/scil_compute_pft.py from 644 to 755 2021-07-16T10:31:06,893 changing mode of build/scripts-3.9/scil_save_connections_from_hdf5.py from 644 to 755 2021-07-16T10:31:06,893 changing mode of build/scripts-3.9/scil_split_volume_by_labels.py from 644 to 755 2021-07-16T10:31:06,894 changing mode of build/scripts-3.9/scil_streamlines_math.py from 644 to 755 2021-07-16T10:31:06,894 changing mode of build/scripts-3.9/scil_flip_gradients.py from 644 to 755 2021-07-16T10:31:06,894 changing mode of build/scripts-3.9/scil_compute_mean_fixel_afd_from_bundles.py from 644 to 755 2021-07-16T10:31:06,894 changing mode of build/scripts-3.9/scil_clean_qbx_clusters.py from 644 to 755 2021-07-16T10:31:06,895 changing mode of build/scripts-3.9/scil_flip_surface.py from 644 to 755 2021-07-16T10:31:06,895 changing mode of build/scripts-3.9/scil_merge_json.py from 644 to 755 2021-07-16T10:31:06,895 changing mode of build/scripts-3.9/scil_crop_volume.py from 644 to 755 2021-07-16T10:31:06,895 changing mode of build/scripts-3.9/scil_compute_dti_metrics.py from 644 to 755 2021-07-16T10:31:06,896 changing mode of build/scripts-3.9/scil_normalize_connectivity.py from 644 to 755 2021-07-16T10:31:06,896 changing mode of build/scripts-3.9/scil_run_commit.py from 644 to 755 2021-07-16T10:31:06,896 changing mode of build/scripts-3.9/scil_filter_tractogram.py from 644 to 755 2021-07-16T10:31:06,896 changing mode of build/scripts-3.9/scil_apply_transform_to_surface.py from 644 to 755 2021-07-16T10:31:06,897 changing mode of build/scripts-3.9/scil_split_volume_by_ids.py from 644 to 755 2021-07-16T10:31:06,897 changing mode of build/scripts-3.9/scil_remove_similar_streamlines.py from 644 to 755 2021-07-16T10:31:06,897 changing mode of build/scripts-3.9/scil_print_header.py from 644 to 755 2021-07-16T10:31:06,898 changing mode of build/scripts-3.9/scil_compute_metrics_stats_in_ROI.py from 644 to 755 2021-07-16T10:31:06,898 changing mode of build/scripts-3.9/scil_convert_rgb.py from 644 to 755 2021-07-16T10:31:06,898 changing mode of build/scripts-3.9/scil_evaluate_connectivity_measures.py from 644 to 755 2021-07-16T10:31:06,898 changing mode of build/scripts-3.9/scil_reshape_to_reference.py from 644 to 755 2021-07-16T10:31:06,899 changing mode of build/scripts-3.9/scil_compute_streamlines_density_map.py from 644 to 755 2021-07-16T10:31:06,899 changing mode of build/scripts-3.9/scil_perform_majority_vote.py from 644 to 755 2021-07-16T10:31:06,899 changing mode of build/scripts-3.9/scil_decompose_connectivity.py from 644 to 755 2021-07-16T10:31:06,900 changing mode of build/scripts-3.9/scil_uniformize_streamlines_endpoints.py from 644 to 755 2021-07-16T10:31:06,900 changing mode of build/scripts-3.9/scil_flip_streamlines.py from 644 to 755 2021-07-16T10:31:06,900 changing mode of build/scripts-3.9/scil_convert_sh_basis.py from 644 to 755 2021-07-16T10:31:06,900 changing mode of build/scripts-3.9/scil_visualize_gradients.py from 644 to 755 2021-07-16T10:31:06,901 changing mode of build/scripts-3.9/scil_endpoints_metric.py from 644 to 755 2021-07-16T10:31:06,901 changing mode of build/scripts-3.9/scil_resample_volume.py from 644 to 755 2021-07-16T10:31:06,901 changing mode of build/scripts-3.9/scil_split_tractograms.py from 644 to 755 2021-07-16T10:31:06,901 changing mode of build/scripts-3.9/scil_set_response_function.py from 644 to 755 2021-07-16T10:31:06,901 changing mode of build/scripts-3.9/scil_bundle_voxel_label_map.py from 644 to 755 2021-07-16T10:31:06,902 changing mode of build/scripts-3.9/scil_reorder_dwi_philips.py from 644 to 755 2021-07-16T10:31:06,902 changing mode of build/scripts-3.9/scil_compress_streamlines.py from 644 to 755 2021-07-16T10:31:06,902 changing mode of build/scripts-3.9/scil_dilate_labels.py from 644 to 755 2021-07-16T10:31:06,902 changing mode of build/scripts-3.9/scil_compute_streamlines_length_stats.py from 644 to 755 2021-07-16T10:31:06,903 changing mode of build/scripts-3.9/scil_reorder_connectivity.py from 644 to 755 2021-07-16T10:31:06,903 changing mode of build/scripts-3.9/scil_compute_kurtosis_metrics.py from 644 to 755 2021-07-16T10:31:06,903 changing mode of build/scripts-3.9/scil_bundle_mean_std_per_point.py from 644 to 755 2021-07-16T10:31:06,903 changing mode of build/scripts-3.9/scil_visualize_bundles_mosaic.py from 644 to 755 2021-07-16T10:31:06,904 changing mode of build/scripts-3.9/scil_compute_todi.py from 644 to 755 2021-07-16T10:31:06,904 changing mode of build/scripts-3.9/scil_compute_fodf_max_in_ventricles.py from 644 to 755 2021-07-16T10:31:06,904 changing mode of build/scripts-3.9/scil_recognize_multi_bundles.py from 644 to 755 2021-07-16T10:31:06,904 changing mode of build/scripts-3.9/scil_combine_labels.py from 644 to 755 2021-07-16T10:31:06,905 changing mode of build/scripts-3.9/scil_compute_fodf.py from 644 to 755 2021-07-16T10:31:06,915 installing to build/bdist.linux-armv7l/wheel 2021-07-16T10:31:06,915 running install 2021-07-16T10:31:06,916 running install_lib 2021-07-16T10:31:06,921 creating build/bdist.linux-armv7l 2021-07-16T10:31:06,921 creating build/bdist.linux-armv7l/wheel 2021-07-16T10:31:06,923 creating build/bdist.linux-armv7l/wheel/scilpy 2021-07-16T10:31:06,924 creating build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,925 copying build/lib.linux-armv7l-3.9/scilpy/gradientsampling/gen_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,927 copying build/lib.linux-armv7l-3.9/scilpy/gradientsampling/save_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,929 copying build/lib.linux-armv7l-3.9/scilpy/gradientsampling/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,931 copying build/lib.linux-armv7l-3.9/scilpy/gradientsampling/optimize_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,933 copying build/lib.linux-armv7l-3.9/scilpy/gradientsampling/multiple_shell_energy.py -> build/bdist.linux-armv7l/wheel/scilpy/gradientsampling 2021-07-16T10:31:06,936 creating build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,937 copying build/lib.linux-armv7l-3.9/scilpy/segment/voting_scheme.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,940 copying build/lib.linux-armv7l-3.9/scilpy/segment/streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,943 copying build/lib.linux-armv7l-3.9/scilpy/segment/recobundlesx.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,946 copying build/lib.linux-armv7l-3.9/scilpy/segment/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,947 copying build/lib.linux-armv7l-3.9/scilpy/segment/models.py -> build/bdist.linux-armv7l/wheel/scilpy/segment 2021-07-16T10:31:06,950 creating build/bdist.linux-armv7l/wheel/scilpy/viz 2021-07-16T10:31:06,951 copying build/lib.linux-armv7l-3.9/scilpy/viz/screenshot.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2021-07-16T10:31:06,954 copying build/lib.linux-armv7l-3.9/scilpy/viz/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2021-07-16T10:31:06,955 copying build/lib.linux-armv7l-3.9/scilpy/viz/gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy/viz 2021-07-16T10:31:06,958 creating build/bdist.linux-armv7l/wheel/scilpy/tracking 2021-07-16T10:31:06,959 copying build/lib.linux-armv7l-3.9/scilpy/tracking/tools.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2021-07-16T10:31:06,962 copying build/lib.linux-armv7l-3.9/scilpy/tracking/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tracking 2021-07-16T10:31:06,964 creating build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,965 copying build/lib.linux-armv7l-3.9/scilpy/io/fetcher.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,968 copying build/lib.linux-armv7l-3.9/scilpy/io/image.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,970 copying build/lib.linux-armv7l-3.9/scilpy/io/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,973 copying build/lib.linux-armv7l-3.9/scilpy/io/streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,976 copying build/lib.linux-armv7l-3.9/scilpy/io/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/io 2021-07-16T10:31:06,978 copying build/lib.linux-armv7l-3.9/scilpy/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy 2021-07-16T10:31:06,980 creating build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2021-07-16T10:31:06,981 copying build/lib.linux-armv7l-3.9/scilpy/preprocessing/distortion_correction.py -> build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2021-07-16T10:31:06,984 copying build/lib.linux-armv7l-3.9/scilpy/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/preprocessing 2021-07-16T10:31:06,986 creating build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,987 copying build/lib.linux-armv7l-3.9/scilpy/utils/image.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,989 copying build/lib.linux-armv7l-3.9/scilpy/utils/nibabel_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,991 copying build/lib.linux-armv7l-3.9/scilpy/utils/filenames.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,993 copying build/lib.linux-armv7l-3.9/scilpy/utils/bvec_bval_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,996 copying build/lib.linux-armv7l-3.9/scilpy/utils/streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:06,999 copying build/lib.linux-armv7l-3.9/scilpy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:07,001 copying build/lib.linux-armv7l-3.9/scilpy/utils/metrics_tools.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:07,003 copying build/lib.linux-armv7l-3.9/scilpy/utils/util.py -> build/bdist.linux-armv7l/wheel/scilpy/utils 2021-07-16T10:31:07,006 copying build/lib.linux-armv7l-3.9/scilpy/version.py -> build/bdist.linux-armv7l/wheel/scilpy 2021-07-16T10:31:07,008 creating build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,009 copying build/lib.linux-armv7l-3.9/scilpy/image/reslice.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,012 copying build/lib.linux-armv7l-3.9/scilpy/image/resample_volume.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,014 copying build/lib.linux-armv7l-3.9/scilpy/image/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,016 copying build/lib.linux-armv7l-3.9/scilpy/image/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,018 copying build/lib.linux-armv7l-3.9/scilpy/image/operations.py -> build/bdist.linux-armv7l/wheel/scilpy/image 2021-07-16T10:31:07,022 creating build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,023 copying build/lib.linux-armv7l-3.9/scilpy/reconst/fodf.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,026 copying build/lib.linux-armv7l-3.9/scilpy/reconst/multi_processes.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,028 copying build/lib.linux-armv7l-3.9/scilpy/reconst/frf.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,031 copying build/lib.linux-armv7l-3.9/scilpy/reconst/utils.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,033 copying build/lib.linux-armv7l-3.9/scilpy/reconst/afd_along_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,035 copying build/lib.linux-armv7l-3.9/scilpy/reconst/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,037 copying build/lib.linux-armv7l-3.9/scilpy/reconst/raw_signal.py -> build/bdist.linux-armv7l/wheel/scilpy/reconst 2021-07-16T10:31:07,040 creating build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,041 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,044 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,070 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,072 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/tools.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,075 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.c -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,107 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.c -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,131 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.c -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,160 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/features.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,163 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,184 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/todi.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,187 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.c -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,214 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,238 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/distance_to_centroid.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,240 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/todi_util.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,243 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/__init__.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,245 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/reproducibility_measures.py -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,248 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/grid_intersections.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,251 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,276 copying build/lib.linux-armv7l-3.9/scilpy/tractanalysis/uncompress.pyx -> build/bdist.linux-armv7l/wheel/scilpy/tractanalysis 2021-07-16T10:31:07,279 running install_data 2021-07-16T10:31:07,282 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data 2021-07-16T10:31:07,282 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/data 2021-07-16T10:31:07,284 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/data/data 2021-07-16T10:31:07,285 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/data/data/LUT 2021-07-16T10:31:07,287 copying data/LUT/freesurfer_desikan_killiany.json -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/data/data/LUT 2021-07-16T10:31:07,289 copying data/LUT/freesurfer_subcortical.json -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/data/data/LUT 2021-07-16T10:31:07,291 running install_egg_info 2021-07-16T10:31:07,299 Copying scilpy.egg-info to build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0-py3.9.egg-info 2021-07-16T10:31:07,312 running install_scripts 2021-07-16T10:31:07,340 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,341 copying build/scripts-3.9/scil_compute_ssst_frf.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,344 copying build/scripts-3.9/scil_compute_centroid.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,346 copying build/scripts-3.9/scil_convert_surface.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,348 copying build/scripts-3.9/scil_run_nlmeans.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,350 copying build/scripts-3.9/scil_recognize_single_bundle.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,353 copying build/scripts-3.9/scil_assign_color_to_trk.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,355 copying build/scripts-3.9/scil_visualize_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,358 copying build/scripts-3.9/scil_verify_space_attributes_compatibility.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,360 copying build/scripts-3.9/scil_remove_outliers_ransac.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,362 copying build/scripts-3.9/scil_visualize_seeds.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,364 copying build/scripts-3.9/scil_validate_bids.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,367 copying build/scripts-3.9/scil_compute_sh_from_signal.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,370 copying build/scripts-3.9/scil_compute_local_tracking.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,373 copying build/scripts-3.9/scil_filter_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,376 copying build/scripts-3.9/scil_compute_hdf5_average_density_map.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,378 copying build/scripts-3.9/scil_resample_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,381 copying build/scripts-3.9/scil_shuffle_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,383 copying build/scripts-3.9/scil_convert_gradients_mrtrix_to_fsl.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,386 copying build/scripts-3.9/scil_compute_mean_fixel_afd_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,388 copying build/scripts-3.9/scil_extract_dwi_shell.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,391 copying build/scripts-3.9/scil_extract_b0.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,394 copying build/scripts-3.9/scil_evaluate_bundles_binary_classification_measures.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,397 copying build/scripts-3.9/scil_remove_invalid_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,399 copying build/scripts-3.9/scil_apply_transform_to_tractogram.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,402 copying build/scripts-3.9/scil_prepare_topup_command.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,405 copying build/scripts-3.9/scil_smooth_surface.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,407 copying build/scripts-3.9/scil_flip_volume.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,409 copying build/scripts-3.9/scil_screenshot_dti.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,412 copying build/scripts-3.9/scil_apply_bias_field_on_dwi.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,415 copying build/scripts-3.9/scil_filter_streamlines_by_length.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,417 copying build/scripts-3.9/scil_compute_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,421 copying build/scripts-3.9/scil_generate_priors_from_bundle.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,424 copying build/scripts-3.9/scil_get_subset_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,426 copying build/scripts-3.9/scil_compute_maps_for_particle_filter_tracking.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,429 copying build/scripts-3.9/scil_print_connectivity_filenames.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,431 copying build/scripts-3.9/scil_convert_tractogram.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,434 copying build/scripts-3.9/scil_image_math.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,436 copying build/scripts-3.9/scil_convert_json_to_xlsx.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,440 copying build/scripts-3.9/scil_plot_mean_std_per_point.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,442 copying build/scripts-3.9/scil_count_non_zero_voxels.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,445 copying build/scripts-3.9/scil_label_and_distance_maps.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,448 copying build/scripts-3.9/scil_connectivity_math.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,450 copying build/scripts-3.9/scil_remove_labels.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,453 copying build/scripts-3.9/scil_apply_transform_to_hdf5.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,456 copying build/scripts-3.9/scil_register_tractogram.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,458 copying build/scripts-3.9/scil_generate_gradient_sampling.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,461 copying build/scripts-3.9/scil_prepare_eddy_command.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,464 copying build/scripts-3.9/scil_evaluate_bundles_pairwise_agreement_measures.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,467 copying build/scripts-3.9/scil_bundle_mean_std.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,470 copying build/scripts-3.9/scil_convert_gradients_fsl_to_mrtrix.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,472 copying build/scripts-3.9/scil_compute_freewater.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,475 copying build/scripts-3.9/scil_screenshot_bundle.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,478 copying build/scripts-3.9/scil_outlier_rejection.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,480 copying build/scripts-3.9/scil_bundle_volume_per_label.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,483 copying build/scripts-3.9/scil_merge_sh.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,486 copying build/scripts-3.9/scil_detect_streamlines_loops.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,488 copying build/scripts-3.9/scil_compute_qbx.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,491 copying build/scripts-3.9/scil_add_tracking_mask_to_pft_maps.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,493 copying build/scripts-3.9/scil_smooth_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,496 copying build/scripts-3.9/scil_search_keywords.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,499 copying build/scripts-3.9/scil_compute_mean_frf.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,501 copying build/scripts-3.9/scil_compute_seed_density_map.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,504 copying build/scripts-3.9/scil_evaluate_bundles_individual_measures.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,507 copying build/scripts-3.9/scil_compute_fodf_metrics.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,510 copying build/scripts-3.9/scil_compute_bundle_profiles.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,513 copying build/scripts-3.9/scil_endpoints_map.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,515 copying build/scripts-3.9/scil_compare_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,518 copying build/scripts-3.9/scil_compute_NODDI_priors.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,521 copying build/scripts-3.9/scil_count_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,524 copying build/scripts-3.9/scil_apply_transform_to_image.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,526 copying build/scripts-3.9/scil_compute_NODDI.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,529 copying build/scripts-3.9/scil_bundle_volume.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,532 copying build/scripts-3.9/scil_compute_pft.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,535 copying build/scripts-3.9/scil_save_connections_from_hdf5.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,538 copying build/scripts-3.9/scil_split_volume_by_labels.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,540 copying build/scripts-3.9/scil_streamlines_math.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,543 copying build/scripts-3.9/scil_flip_gradients.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,546 copying build/scripts-3.9/scil_compute_mean_fixel_afd_from_bundles.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,548 copying build/scripts-3.9/scil_clean_qbx_clusters.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,550 copying build/scripts-3.9/scil_flip_surface.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,552 copying build/scripts-3.9/scil_merge_json.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,554 copying build/scripts-3.9/scil_crop_volume.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,557 copying build/scripts-3.9/scil_compute_dti_metrics.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,559 copying build/scripts-3.9/scil_normalize_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,562 copying build/scripts-3.9/scil_run_commit.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,565 copying build/scripts-3.9/scil_filter_tractogram.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,567 copying build/scripts-3.9/scil_apply_transform_to_surface.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,569 copying build/scripts-3.9/scil_split_volume_by_ids.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,571 copying build/scripts-3.9/scil_remove_similar_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,574 copying build/scripts-3.9/scil_print_header.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,576 copying build/scripts-3.9/scil_compute_metrics_stats_in_ROI.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,578 copying build/scripts-3.9/scil_convert_rgb.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,580 copying build/scripts-3.9/scil_evaluate_connectivity_measures.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,583 copying build/scripts-3.9/scil_reshape_to_reference.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,585 copying build/scripts-3.9/scil_compute_streamlines_density_map.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,587 copying build/scripts-3.9/scil_perform_majority_vote.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,589 copying build/scripts-3.9/scil_decompose_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,592 copying build/scripts-3.9/scil_uniformize_streamlines_endpoints.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,594 copying build/scripts-3.9/scil_flip_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,596 copying build/scripts-3.9/scil_convert_sh_basis.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,599 copying build/scripts-3.9/scil_visualize_gradients.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,601 copying build/scripts-3.9/scil_endpoints_metric.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,604 copying build/scripts-3.9/scil_resample_volume.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,606 copying build/scripts-3.9/scil_split_tractograms.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,608 copying build/scripts-3.9/scil_set_response_function.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,610 copying build/scripts-3.9/scil_bundle_voxel_label_map.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,612 copying build/scripts-3.9/scil_reorder_dwi_philips.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,614 copying build/scripts-3.9/scil_compress_streamlines.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,616 copying build/scripts-3.9/scil_dilate_labels.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,619 copying build/scripts-3.9/scil_compute_streamlines_length_stats.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,620 copying build/scripts-3.9/scil_reorder_connectivity.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,623 copying build/scripts-3.9/scil_compute_kurtosis_metrics.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,626 copying build/scripts-3.9/scil_bundle_mean_std_per_point.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,628 copying build/scripts-3.9/scil_visualize_bundles_mosaic.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,631 copying build/scripts-3.9/scil_compute_todi.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,633 copying build/scripts-3.9/scil_compute_fodf_max_in_ventricles.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,636 copying build/scripts-3.9/scil_recognize_multi_bundles.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,639 copying build/scripts-3.9/scil_combine_labels.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,641 copying build/scripts-3.9/scil_compute_fodf.py -> build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts 2021-07-16T10:31:07,644 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_ssst_frf.py to 755 2021-07-16T10:31:07,644 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_centroid.py to 755 2021-07-16T10:31:07,644 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_surface.py to 755 2021-07-16T10:31:07,645 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_run_nlmeans.py to 755 2021-07-16T10:31:07,645 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_recognize_single_bundle.py to 755 2021-07-16T10:31:07,645 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_assign_color_to_trk.py to 755 2021-07-16T10:31:07,645 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_visualize_connectivity.py to 755 2021-07-16T10:31:07,646 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_verify_space_attributes_compatibility.py to 755 2021-07-16T10:31:07,646 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_remove_outliers_ransac.py to 755 2021-07-16T10:31:07,646 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_visualize_seeds.py to 755 2021-07-16T10:31:07,647 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_validate_bids.py to 755 2021-07-16T10:31:07,647 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_sh_from_signal.py to 755 2021-07-16T10:31:07,647 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_local_tracking.py to 755 2021-07-16T10:31:07,648 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_filter_connectivity.py to 755 2021-07-16T10:31:07,648 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_hdf5_average_density_map.py to 755 2021-07-16T10:31:07,648 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_resample_streamlines.py to 755 2021-07-16T10:31:07,648 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_shuffle_streamlines.py to 755 2021-07-16T10:31:07,649 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_gradients_mrtrix_to_fsl.py to 755 2021-07-16T10:31:07,649 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_mean_fixel_afd_from_hdf5.py to 755 2021-07-16T10:31:07,649 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_extract_dwi_shell.py to 755 2021-07-16T10:31:07,649 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_extract_b0.py to 755 2021-07-16T10:31:07,650 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_binary_classification_measures.py to 755 2021-07-16T10:31:07,650 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_remove_invalid_streamlines.py to 755 2021-07-16T10:31:07,650 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_tractogram.py to 755 2021-07-16T10:31:07,651 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_prepare_topup_command.py to 755 2021-07-16T10:31:07,651 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_smooth_surface.py to 755 2021-07-16T10:31:07,651 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_flip_volume.py to 755 2021-07-16T10:31:07,651 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_screenshot_dti.py to 755 2021-07-16T10:31:07,652 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_apply_bias_field_on_dwi.py to 755 2021-07-16T10:31:07,652 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_filter_streamlines_by_length.py to 755 2021-07-16T10:31:07,652 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_connectivity.py to 755 2021-07-16T10:31:07,653 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_generate_priors_from_bundle.py to 755 2021-07-16T10:31:07,653 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_get_subset_streamlines.py to 755 2021-07-16T10:31:07,653 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_maps_for_particle_filter_tracking.py to 755 2021-07-16T10:31:07,653 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_print_connectivity_filenames.py to 755 2021-07-16T10:31:07,654 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_tractogram.py to 755 2021-07-16T10:31:07,654 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_image_math.py to 755 2021-07-16T10:31:07,654 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_json_to_xlsx.py to 755 2021-07-16T10:31:07,655 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_plot_mean_std_per_point.py to 755 2021-07-16T10:31:07,655 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_count_non_zero_voxels.py to 755 2021-07-16T10:31:07,655 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_label_and_distance_maps.py to 755 2021-07-16T10:31:07,656 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_connectivity_math.py to 755 2021-07-16T10:31:07,656 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_remove_labels.py to 755 2021-07-16T10:31:07,656 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_hdf5.py to 755 2021-07-16T10:31:07,657 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_register_tractogram.py to 755 2021-07-16T10:31:07,657 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_generate_gradient_sampling.py to 755 2021-07-16T10:31:07,657 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_prepare_eddy_command.py to 755 2021-07-16T10:31:07,657 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_pairwise_agreement_measures.py to 755 2021-07-16T10:31:07,658 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_bundle_mean_std.py to 755 2021-07-16T10:31:07,658 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_gradients_fsl_to_mrtrix.py to 755 2021-07-16T10:31:07,658 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_freewater.py to 755 2021-07-16T10:31:07,659 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_screenshot_bundle.py to 755 2021-07-16T10:31:07,659 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_outlier_rejection.py to 755 2021-07-16T10:31:07,659 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_bundle_volume_per_label.py to 755 2021-07-16T10:31:07,659 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_merge_sh.py to 755 2021-07-16T10:31:07,660 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_detect_streamlines_loops.py to 755 2021-07-16T10:31:07,660 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_qbx.py to 755 2021-07-16T10:31:07,660 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_add_tracking_mask_to_pft_maps.py to 755 2021-07-16T10:31:07,661 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_smooth_streamlines.py to 755 2021-07-16T10:31:07,661 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_search_keywords.py to 755 2021-07-16T10:31:07,661 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_mean_frf.py to 755 2021-07-16T10:31:07,661 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_seed_density_map.py to 755 2021-07-16T10:31:07,662 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_individual_measures.py to 755 2021-07-16T10:31:07,662 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_fodf_metrics.py to 755 2021-07-16T10:31:07,662 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_bundle_profiles.py to 755 2021-07-16T10:31:07,663 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_endpoints_map.py to 755 2021-07-16T10:31:07,663 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compare_connectivity.py to 755 2021-07-16T10:31:07,663 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_NODDI_priors.py to 755 2021-07-16T10:31:07,664 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_count_streamlines.py to 755 2021-07-16T10:31:07,664 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_image.py to 755 2021-07-16T10:31:07,664 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_NODDI.py to 755 2021-07-16T10:31:07,664 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_bundle_volume.py to 755 2021-07-16T10:31:07,665 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_pft.py to 755 2021-07-16T10:31:07,665 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_save_connections_from_hdf5.py to 755 2021-07-16T10:31:07,665 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_split_volume_by_labels.py to 755 2021-07-16T10:31:07,666 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_streamlines_math.py to 755 2021-07-16T10:31:07,666 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_flip_gradients.py to 755 2021-07-16T10:31:07,666 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_mean_fixel_afd_from_bundles.py to 755 2021-07-16T10:31:07,666 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_clean_qbx_clusters.py to 755 2021-07-16T10:31:07,667 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_flip_surface.py to 755 2021-07-16T10:31:07,667 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_merge_json.py to 755 2021-07-16T10:31:07,667 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_crop_volume.py to 755 2021-07-16T10:31:07,668 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_dti_metrics.py to 755 2021-07-16T10:31:07,668 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_normalize_connectivity.py to 755 2021-07-16T10:31:07,668 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_run_commit.py to 755 2021-07-16T10:31:07,668 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_filter_tractogram.py to 755 2021-07-16T10:31:07,669 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_surface.py to 755 2021-07-16T10:31:07,669 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_split_volume_by_ids.py to 755 2021-07-16T10:31:07,669 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_remove_similar_streamlines.py to 755 2021-07-16T10:31:07,669 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_print_header.py to 755 2021-07-16T10:31:07,670 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_metrics_stats_in_ROI.py to 755 2021-07-16T10:31:07,670 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_rgb.py to 755 2021-07-16T10:31:07,670 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_evaluate_connectivity_measures.py to 755 2021-07-16T10:31:07,670 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_reshape_to_reference.py to 755 2021-07-16T10:31:07,671 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_streamlines_density_map.py to 755 2021-07-16T10:31:07,671 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_perform_majority_vote.py to 755 2021-07-16T10:31:07,671 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_decompose_connectivity.py to 755 2021-07-16T10:31:07,671 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_uniformize_streamlines_endpoints.py to 755 2021-07-16T10:31:07,672 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_flip_streamlines.py to 755 2021-07-16T10:31:07,672 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_convert_sh_basis.py to 755 2021-07-16T10:31:07,672 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_visualize_gradients.py to 755 2021-07-16T10:31:07,672 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_endpoints_metric.py to 755 2021-07-16T10:31:07,672 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_resample_volume.py to 755 2021-07-16T10:31:07,673 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_split_tractograms.py to 755 2021-07-16T10:31:07,673 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_set_response_function.py to 755 2021-07-16T10:31:07,673 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_bundle_voxel_label_map.py to 755 2021-07-16T10:31:07,673 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_reorder_dwi_philips.py to 755 2021-07-16T10:31:07,674 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compress_streamlines.py to 755 2021-07-16T10:31:07,674 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_dilate_labels.py to 755 2021-07-16T10:31:07,674 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_streamlines_length_stats.py to 755 2021-07-16T10:31:07,674 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_reorder_connectivity.py to 755 2021-07-16T10:31:07,675 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_kurtosis_metrics.py to 755 2021-07-16T10:31:07,675 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_bundle_mean_std_per_point.py to 755 2021-07-16T10:31:07,675 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_visualize_bundles_mosaic.py to 755 2021-07-16T10:31:07,675 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_todi.py to 755 2021-07-16T10:31:07,676 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_fodf_max_in_ventricles.py to 755 2021-07-16T10:31:07,676 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_recognize_multi_bundles.py to 755 2021-07-16T10:31:07,676 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_combine_labels.py to 755 2021-07-16T10:31:07,676 changing mode of build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.data/scripts/scil_compute_fodf.py to 755 2021-07-16T10:31:07,750 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-16T10:31:07,754 creating build/bdist.linux-armv7l/wheel/scilpy-0.2.dev0.dist-info/WHEEL 2021-07-16T10:31:07,757 creating '/tmp/pip-wheel-b41y87hm/scilpy-0.2.dev0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T10:31:07,760 adding 'scilpy/__init__.py' 2021-07-16T10:31:07,761 adding 'scilpy/version.py' 2021-07-16T10:31:07,763 adding 'scilpy/gradientsampling/__init__.py' 2021-07-16T10:31:07,764 adding 'scilpy/gradientsampling/gen_gradient_sampling.py' 2021-07-16T10:31:07,766 adding 'scilpy/gradientsampling/multiple_shell_energy.py' 2021-07-16T10:31:07,769 adding 'scilpy/gradientsampling/optimize_gradient_sampling.py' 2021-07-16T10:31:07,770 adding 'scilpy/gradientsampling/save_gradient_sampling.py' 2021-07-16T10:31:07,772 adding 'scilpy/image/__init__.py' 2021-07-16T10:31:07,774 adding 'scilpy/image/operations.py' 2021-07-16T10:31:07,776 adding 'scilpy/image/resample_volume.py' 2021-07-16T10:31:07,777 adding 'scilpy/image/reslice.py' 2021-07-16T10:31:07,779 adding 'scilpy/image/utils.py' 2021-07-16T10:31:07,781 adding 'scilpy/io/__init__.py' 2021-07-16T10:31:07,782 adding 'scilpy/io/fetcher.py' 2021-07-16T10:31:07,784 adding 'scilpy/io/image.py' 2021-07-16T10:31:07,785 adding 'scilpy/io/streamlines.py' 2021-07-16T10:31:07,788 adding 'scilpy/io/utils.py' 2021-07-16T10:31:07,790 adding 'scilpy/preprocessing/__init__.py' 2021-07-16T10:31:07,791 adding 'scilpy/preprocessing/distortion_correction.py' 2021-07-16T10:31:07,793 adding 'scilpy/reconst/__init__.py' 2021-07-16T10:31:07,794 adding 'scilpy/reconst/afd_along_streamlines.py' 2021-07-16T10:31:07,796 adding 'scilpy/reconst/fodf.py' 2021-07-16T10:31:07,797 adding 'scilpy/reconst/frf.py' 2021-07-16T10:31:07,800 adding 'scilpy/reconst/multi_processes.py' 2021-07-16T10:31:07,801 adding 'scilpy/reconst/raw_signal.py' 2021-07-16T10:31:07,803 adding 'scilpy/reconst/utils.py' 2021-07-16T10:31:07,804 adding 'scilpy/segment/__init__.py' 2021-07-16T10:31:07,806 adding 'scilpy/segment/models.py' 2021-07-16T10:31:07,808 adding 'scilpy/segment/recobundlesx.py' 2021-07-16T10:31:07,810 adding 'scilpy/segment/streamlines.py' 2021-07-16T10:31:07,813 adding 'scilpy/segment/voting_scheme.py' 2021-07-16T10:31:07,815 adding 'scilpy/tracking/__init__.py' 2021-07-16T10:31:07,816 adding 'scilpy/tracking/tools.py' 2021-07-16T10:31:07,818 adding 'scilpy/tractanalysis/__init__.py' 2021-07-16T10:31:07,820 adding 'scilpy/tractanalysis/distance_to_centroid.py' 2021-07-16T10:31:07,821 adding 'scilpy/tractanalysis/features.py' 2021-07-16T10:31:07,903 adding 'scilpy/tractanalysis/grid_intersections.c' 2021-07-16T10:31:08,089 adding 'scilpy/tractanalysis/grid_intersections.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T10:31:08,098 adding 'scilpy/tractanalysis/grid_intersections.pyx' 2021-07-16T10:31:08,171 adding 'scilpy/tractanalysis/quick_tools.c' 2021-07-16T10:31:08,343 adding 'scilpy/tractanalysis/quick_tools.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T10:31:08,351 adding 'scilpy/tractanalysis/quick_tools.pyx' 2021-07-16T10:31:08,353 adding 'scilpy/tractanalysis/reproducibility_measures.py' 2021-07-16T10:31:08,431 adding 'scilpy/tractanalysis/streamlines_metrics.c' 2021-07-16T10:31:08,625 adding 'scilpy/tractanalysis/streamlines_metrics.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T10:31:08,634 adding 'scilpy/tractanalysis/streamlines_metrics.pyx' 2021-07-16T10:31:08,636 adding 'scilpy/tractanalysis/todi.py' 2021-07-16T10:31:08,638 adding 'scilpy/tractanalysis/todi_util.py' 2021-07-16T10:31:08,639 adding 'scilpy/tractanalysis/tools.py' 2021-07-16T10:31:08,723 adding 'scilpy/tractanalysis/uncompress.c' 2021-07-16T10:31:08,920 adding 'scilpy/tractanalysis/uncompress.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T10:31:08,930 adding 'scilpy/tractanalysis/uncompress.pyx' 2021-07-16T10:31:08,931 adding 'scilpy/utils/__init__.py' 2021-07-16T10:31:08,933 adding 'scilpy/utils/bvec_bval_tools.py' 2021-07-16T10:31:08,935 adding 'scilpy/utils/filenames.py' 2021-07-16T10:31:08,936 adding 'scilpy/utils/image.py' 2021-07-16T10:31:08,938 adding 'scilpy/utils/metrics_tools.py' 2021-07-16T10:31:08,939 adding 'scilpy/utils/nibabel_tools.py' 2021-07-16T10:31:08,941 adding 'scilpy/utils/streamlines.py' 2021-07-16T10:31:08,942 adding 'scilpy/utils/util.py' 2021-07-16T10:31:08,944 adding 'scilpy/viz/__init__.py' 2021-07-16T10:31:08,946 adding 'scilpy/viz/gradient_sampling.py' 2021-07-16T10:31:08,947 adding 'scilpy/viz/screenshot.py' 2021-07-16T10:31:08,950 adding 'scilpy-0.2.dev0.data/data/data/LUT/freesurfer_desikan_killiany.json' 2021-07-16T10:31:08,951 adding 'scilpy-0.2.dev0.data/data/data/LUT/freesurfer_subcortical.json' 2021-07-16T10:31:08,956 adding 'scilpy-0.2.dev0.data/scripts/scil_add_tracking_mask_to_pft_maps.py' 2021-07-16T10:31:08,957 adding 'scilpy-0.2.dev0.data/scripts/scil_apply_bias_field_on_dwi.py' 2021-07-16T10:31:08,959 adding 'scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_hdf5.py' 2021-07-16T10:31:08,960 adding 'scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_image.py' 2021-07-16T10:31:08,961 adding 'scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_surface.py' 2021-07-16T10:31:08,963 adding 'scilpy-0.2.dev0.data/scripts/scil_apply_transform_to_tractogram.py' 2021-07-16T10:31:08,964 adding 'scilpy-0.2.dev0.data/scripts/scil_assign_color_to_trk.py' 2021-07-16T10:31:08,965 adding 'scilpy-0.2.dev0.data/scripts/scil_bundle_mean_std.py' 2021-07-16T10:31:08,967 adding 'scilpy-0.2.dev0.data/scripts/scil_bundle_mean_std_per_point.py' 2021-07-16T10:31:08,968 adding 'scilpy-0.2.dev0.data/scripts/scil_bundle_volume.py' 2021-07-16T10:31:08,970 adding 'scilpy-0.2.dev0.data/scripts/scil_bundle_volume_per_label.py' 2021-07-16T10:31:08,971 adding 'scilpy-0.2.dev0.data/scripts/scil_bundle_voxel_label_map.py' 2021-07-16T10:31:08,973 adding 'scilpy-0.2.dev0.data/scripts/scil_clean_qbx_clusters.py' 2021-07-16T10:31:08,975 adding 'scilpy-0.2.dev0.data/scripts/scil_combine_labels.py' 2021-07-16T10:31:08,977 adding 'scilpy-0.2.dev0.data/scripts/scil_compare_connectivity.py' 2021-07-16T10:31:08,978 adding 'scilpy-0.2.dev0.data/scripts/scil_compress_streamlines.py' 2021-07-16T10:31:08,979 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_NODDI.py' 2021-07-16T10:31:08,981 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_NODDI_priors.py' 2021-07-16T10:31:08,983 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_bundle_profiles.py' 2021-07-16T10:31:08,984 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_centroid.py' 2021-07-16T10:31:08,986 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_connectivity.py' 2021-07-16T10:31:08,989 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_dti_metrics.py' 2021-07-16T10:31:08,990 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_fodf.py' 2021-07-16T10:31:08,992 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_fodf_max_in_ventricles.py' 2021-07-16T10:31:08,993 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_fodf_metrics.py' 2021-07-16T10:31:08,995 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_freewater.py' 2021-07-16T10:31:08,997 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_hdf5_average_density_map.py' 2021-07-16T10:31:08,998 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_kurtosis_metrics.py' 2021-07-16T10:31:09,000 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_local_tracking.py' 2021-07-16T10:31:09,002 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_maps_for_particle_filter_tracking.py' 2021-07-16T10:31:09,003 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_mean_fixel_afd_from_bundles.py' 2021-07-16T10:31:09,005 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_mean_fixel_afd_from_hdf5.py' 2021-07-16T10:31:09,006 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_mean_frf.py' 2021-07-16T10:31:09,007 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_metrics_stats_in_ROI.py' 2021-07-16T10:31:09,009 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_pft.py' 2021-07-16T10:31:09,011 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_qbx.py' 2021-07-16T10:31:09,012 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_seed_density_map.py' 2021-07-16T10:31:09,013 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_sh_from_signal.py' 2021-07-16T10:31:09,015 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_ssst_frf.py' 2021-07-16T10:31:09,016 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_streamlines_density_map.py' 2021-07-16T10:31:09,017 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_streamlines_length_stats.py' 2021-07-16T10:31:09,019 adding 'scilpy-0.2.dev0.data/scripts/scil_compute_todi.py' 2021-07-16T10:31:09,021 adding 'scilpy-0.2.dev0.data/scripts/scil_connectivity_math.py' 2021-07-16T10:31:09,022 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_gradients_fsl_to_mrtrix.py' 2021-07-16T10:31:09,023 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_gradients_mrtrix_to_fsl.py' 2021-07-16T10:31:09,025 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_json_to_xlsx.py' 2021-07-16T10:31:09,026 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_rgb.py' 2021-07-16T10:31:09,028 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_sh_basis.py' 2021-07-16T10:31:09,029 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_surface.py' 2021-07-16T10:31:09,030 adding 'scilpy-0.2.dev0.data/scripts/scil_convert_tractogram.py' 2021-07-16T10:31:09,031 adding 'scilpy-0.2.dev0.data/scripts/scil_count_non_zero_voxels.py' 2021-07-16T10:31:09,032 adding 'scilpy-0.2.dev0.data/scripts/scil_count_streamlines.py' 2021-07-16T10:31:09,034 adding 'scilpy-0.2.dev0.data/scripts/scil_crop_volume.py' 2021-07-16T10:31:09,036 adding 'scilpy-0.2.dev0.data/scripts/scil_decompose_connectivity.py' 2021-07-16T10:31:09,038 adding 'scilpy-0.2.dev0.data/scripts/scil_detect_streamlines_loops.py' 2021-07-16T10:31:09,039 adding 'scilpy-0.2.dev0.data/scripts/scil_dilate_labels.py' 2021-07-16T10:31:09,041 adding 'scilpy-0.2.dev0.data/scripts/scil_endpoints_map.py' 2021-07-16T10:31:09,042 adding 'scilpy-0.2.dev0.data/scripts/scil_endpoints_metric.py' 2021-07-16T10:31:09,044 adding 'scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_binary_classification_measures.py' 2021-07-16T10:31:09,045 adding 'scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_individual_measures.py' 2021-07-16T10:31:09,047 adding 'scilpy-0.2.dev0.data/scripts/scil_evaluate_bundles_pairwise_agreement_measures.py' 2021-07-16T10:31:09,049 adding 'scilpy-0.2.dev0.data/scripts/scil_evaluate_connectivity_measures.py' 2021-07-16T10:31:09,051 adding 'scilpy-0.2.dev0.data/scripts/scil_extract_b0.py' 2021-07-16T10:31:09,052 adding 'scilpy-0.2.dev0.data/scripts/scil_extract_dwi_shell.py' 2021-07-16T10:31:09,054 adding 'scilpy-0.2.dev0.data/scripts/scil_filter_connectivity.py' 2021-07-16T10:31:09,055 adding 'scilpy-0.2.dev0.data/scripts/scil_filter_streamlines_by_length.py' 2021-07-16T10:31:09,057 adding 'scilpy-0.2.dev0.data/scripts/scil_filter_tractogram.py' 2021-07-16T10:31:09,058 adding 'scilpy-0.2.dev0.data/scripts/scil_flip_gradients.py' 2021-07-16T10:31:09,059 adding 'scilpy-0.2.dev0.data/scripts/scil_flip_streamlines.py' 2021-07-16T10:31:09,061 adding 'scilpy-0.2.dev0.data/scripts/scil_flip_surface.py' 2021-07-16T10:31:09,062 adding 'scilpy-0.2.dev0.data/scripts/scil_flip_volume.py' 2021-07-16T10:31:09,063 adding 'scilpy-0.2.dev0.data/scripts/scil_generate_gradient_sampling.py' 2021-07-16T10:31:09,065 adding 'scilpy-0.2.dev0.data/scripts/scil_generate_priors_from_bundle.py' 2021-07-16T10:31:09,066 adding 'scilpy-0.2.dev0.data/scripts/scil_get_subset_streamlines.py' 2021-07-16T10:31:09,068 adding 'scilpy-0.2.dev0.data/scripts/scil_image_math.py' 2021-07-16T10:31:09,069 adding 'scilpy-0.2.dev0.data/scripts/scil_label_and_distance_maps.py' 2021-07-16T10:31:09,070 adding 'scilpy-0.2.dev0.data/scripts/scil_merge_json.py' 2021-07-16T10:31:09,071 adding 'scilpy-0.2.dev0.data/scripts/scil_merge_sh.py' 2021-07-16T10:31:09,073 adding 'scilpy-0.2.dev0.data/scripts/scil_normalize_connectivity.py' 2021-07-16T10:31:09,074 adding 'scilpy-0.2.dev0.data/scripts/scil_outlier_rejection.py' 2021-07-16T10:31:09,076 adding 'scilpy-0.2.dev0.data/scripts/scil_perform_majority_vote.py' 2021-07-16T10:31:09,077 adding 'scilpy-0.2.dev0.data/scripts/scil_plot_mean_std_per_point.py' 2021-07-16T10:31:09,079 adding 'scilpy-0.2.dev0.data/scripts/scil_prepare_eddy_command.py' 2021-07-16T10:31:09,080 adding 'scilpy-0.2.dev0.data/scripts/scil_prepare_topup_command.py' 2021-07-16T10:31:09,081 adding 'scilpy-0.2.dev0.data/scripts/scil_print_connectivity_filenames.py' 2021-07-16T10:31:09,083 adding 'scilpy-0.2.dev0.data/scripts/scil_print_header.py' 2021-07-16T10:31:09,084 adding 'scilpy-0.2.dev0.data/scripts/scil_recognize_multi_bundles.py' 2021-07-16T10:31:09,086 adding 'scilpy-0.2.dev0.data/scripts/scil_recognize_single_bundle.py' 2021-07-16T10:31:09,087 adding 'scilpy-0.2.dev0.data/scripts/scil_register_tractogram.py' 2021-07-16T10:31:09,089 adding 'scilpy-0.2.dev0.data/scripts/scil_remove_invalid_streamlines.py' 2021-07-16T10:31:09,090 adding 'scilpy-0.2.dev0.data/scripts/scil_remove_labels.py' 2021-07-16T10:31:09,091 adding 'scilpy-0.2.dev0.data/scripts/scil_remove_outliers_ransac.py' 2021-07-16T10:31:09,093 adding 'scilpy-0.2.dev0.data/scripts/scil_remove_similar_streamlines.py' 2021-07-16T10:31:09,095 adding 'scilpy-0.2.dev0.data/scripts/scil_reorder_connectivity.py' 2021-07-16T10:31:09,096 adding 'scilpy-0.2.dev0.data/scripts/scil_reorder_dwi_philips.py' 2021-07-16T10:31:09,097 adding 'scilpy-0.2.dev0.data/scripts/scil_resample_streamlines.py' 2021-07-16T10:31:09,098 adding 'scilpy-0.2.dev0.data/scripts/scil_resample_volume.py' 2021-07-16T10:31:09,100 adding 'scilpy-0.2.dev0.data/scripts/scil_reshape_to_reference.py' 2021-07-16T10:31:09,102 adding 'scilpy-0.2.dev0.data/scripts/scil_run_commit.py' 2021-07-16T10:31:09,104 adding 'scilpy-0.2.dev0.data/scripts/scil_run_nlmeans.py' 2021-07-16T10:31:09,106 adding 'scilpy-0.2.dev0.data/scripts/scil_save_connections_from_hdf5.py' 2021-07-16T10:31:09,107 adding 'scilpy-0.2.dev0.data/scripts/scil_screenshot_bundle.py' 2021-07-16T10:31:09,109 adding 'scilpy-0.2.dev0.data/scripts/scil_screenshot_dti.py' 2021-07-16T10:31:09,111 adding 'scilpy-0.2.dev0.data/scripts/scil_search_keywords.py' 2021-07-16T10:31:09,112 adding 'scilpy-0.2.dev0.data/scripts/scil_set_response_function.py' 2021-07-16T10:31:09,113 adding 'scilpy-0.2.dev0.data/scripts/scil_shuffle_streamlines.py' 2021-07-16T10:31:09,115 adding 'scilpy-0.2.dev0.data/scripts/scil_smooth_streamlines.py' 2021-07-16T10:31:09,116 adding 'scilpy-0.2.dev0.data/scripts/scil_smooth_surface.py' 2021-07-16T10:31:09,117 adding 'scilpy-0.2.dev0.data/scripts/scil_split_tractograms.py' 2021-07-16T10:31:09,119 adding 'scilpy-0.2.dev0.data/scripts/scil_split_volume_by_ids.py' 2021-07-16T10:31:09,120 adding 'scilpy-0.2.dev0.data/scripts/scil_split_volume_by_labels.py' 2021-07-16T10:31:09,122 adding 'scilpy-0.2.dev0.data/scripts/scil_streamlines_math.py' 2021-07-16T10:31:09,123 adding 'scilpy-0.2.dev0.data/scripts/scil_uniformize_streamlines_endpoints.py' 2021-07-16T10:31:09,125 adding 'scilpy-0.2.dev0.data/scripts/scil_validate_bids.py' 2021-07-16T10:31:09,126 adding 'scilpy-0.2.dev0.data/scripts/scil_verify_space_attributes_compatibility.py' 2021-07-16T10:31:09,128 adding 'scilpy-0.2.dev0.data/scripts/scil_visualize_bundles_mosaic.py' 2021-07-16T10:31:09,130 adding 'scilpy-0.2.dev0.data/scripts/scil_visualize_connectivity.py' 2021-07-16T10:31:09,131 adding 'scilpy-0.2.dev0.data/scripts/scil_visualize_gradients.py' 2021-07-16T10:31:09,133 adding 'scilpy-0.2.dev0.data/scripts/scil_visualize_seeds.py' 2021-07-16T10:31:09,135 adding 'scilpy-0.2.dev0.dist-info/LICENSE' 2021-07-16T10:31:09,136 adding 'scilpy-0.2.dev0.dist-info/METADATA' 2021-07-16T10:31:09,137 adding 'scilpy-0.2.dev0.dist-info/WHEEL' 2021-07-16T10:31:09,138 adding 'scilpy-0.2.dev0.dist-info/top_level.txt' 2021-07-16T10:31:09,141 adding 'scilpy-0.2.dev0.dist-info/RECORD' 2021-07-16T10:31:09,177 removing build/bdist.linux-armv7l/wheel 2021-07-16T10:31:09,653 Building wheel for scilpy (setup.py): finished with status 'done' 2021-07-16T10:31:09,716 Created wheel for scilpy: filename=scilpy-0.2.dev0-cp39-cp39-linux_armv7l.whl size=2125551 sha256=4d60471b8bc262bab66213e2b42319310aa245a776f74de10d899520122d7320 2021-07-16T10:31:09,716 Stored in directory: /tmp/pip-ephem-wheel-cache-h7snommp/wheels/0e/c1/9d/6c9776480cc724d226eb1e8470b248c05f9dc5c9c15b91c2bf 2021-07-16T10:31:09,733 Successfully built scilpy 2021-07-16T10:31:09,805 Removed build tracker: '/tmp/pip-req-tracker-j3onh758'