2021-07-16T10:44:16,957 Created temporary directory: /tmp/pip-ephem-wheel-cache-mkudke__ 2021-07-16T10:44:16,960 Created temporary directory: /tmp/pip-req-tracker-w0_h4q5h 2021-07-16T10:44:16,961 Initialized build tracking at /tmp/pip-req-tracker-w0_h4q5h 2021-07-16T10:44:16,961 Created build tracker: /tmp/pip-req-tracker-w0_h4q5h 2021-07-16T10:44:16,961 Entered build tracker: /tmp/pip-req-tracker-w0_h4q5h 2021-07-16T10:44:16,962 Created temporary directory: /tmp/pip-wheel-sko4ha9b 2021-07-16T10:44:16,990 1 location(s) to search for versions of pygom: 2021-07-16T10:44:16,990 * https://pypi.org/simple/pygom/ 2021-07-16T10:44:16,991 Fetching project page and analyzing links: https://pypi.org/simple/pygom/ 2021-07-16T10:44:16,992 Getting page https://pypi.org/simple/pygom/ 2021-07-16T10:44:16,993 Found index url https://pypi.org/simple 2021-07-16T10:44:17,176 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b6/64/9f5f0c582270f4fa6336ab727dc8ae04f4a450307b4159cee9a89cf41706/pygom-0.1.0-py2.7.egg#sha256=a57d8bfa86d68e33737b283d7ae8e211fc7294d446acc21f7889053162977208 (from https://pypi.org/simple/pygom/) 2021-07-16T10:44:17,176 Found link https://files.pythonhosted.org/packages/be/f0/4378974b05e34251b59a7c1ee48e871ab9e61ca804d6b7b84d2b3cd30ccd/pygom-0.1.0.tar.gz#sha256=10a973ac1aeac930fc8ea71507517b48eb9df79ce33d232fd73bfe3d477bc578 (from https://pypi.org/simple/pygom/), version: 0.1.0 2021-07-16T10:44:17,176 Found link https://files.pythonhosted.org/packages/3f/06/5c848ec61811d1cf4544ad492f45c63769bdbc53a898106ae2c7f944eaaf/pygom-0.1.1.tar.gz#sha256=d5eaf3d646b3a8be94580c6761d4a4eca308bfcb2d6de1272de1ed8031e714d8 (from https://pypi.org/simple/pygom/), version: 0.1.1 2021-07-16T10:44:17,177 Found link https://files.pythonhosted.org/packages/24/97/d708814dbc6a86450d134418696b9ef1ffd217abc33c71392df7fab9fe08/pygom-0.1.4.tar.gz#sha256=8bdb39a21332cbe45c63abe5a54a6905c8757201a5f7d4e94b7bf4cacfd9d760 (from https://pypi.org/simple/pygom/), version: 0.1.4 2021-07-16T10:44:17,177 Found link https://files.pythonhosted.org/packages/fa/dc/54b34416f5d21618e781f0fce562a4d85e7291b9e50b9f14c4e9f2d98126/pygom-0.1.5.tar.gz#sha256=6e2183691d9f876d986859287b928b41e6ba384e6bb79e69acc903616e55f082 (from https://pypi.org/simple/pygom/), version: 0.1.5 2021-07-16T10:44:17,177 Found link https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db (from https://pypi.org/simple/pygom/), version: 0.1.6 2021-07-16T10:44:17,177 Found link https://files.pythonhosted.org/packages/a4/32/f5eb25fd1ee4e2fa2d4a71a9eeb152ec453a5f8610f1d2161382175c1471/pygom-0.1.7.tar.gz#sha256=34bb9d154cbb2770e135d918ebbbc8d8e22c44c54456e42c5642f0d2e98425c2 (from https://pypi.org/simple/pygom/), version: 0.1.7 2021-07-16T10:44:17,178 Skipping link: not a file: https://pypi.org/simple/pygom/ 2021-07-16T10:44:17,196 Given no hashes to check 1 links for project 'pygom': discarding no candidates 2021-07-16T10:44:17,218 Collecting pygom==0.1.7 2021-07-16T10:44:17,220 Created temporary directory: /tmp/pip-unpack-610atazm 2021-07-16T10:44:17,263 Downloading pygom-0.1.7.tar.gz (499 kB) 2021-07-16T10:44:17,685 Added pygom==0.1.7 from https://files.pythonhosted.org/packages/a4/32/f5eb25fd1ee4e2fa2d4a71a9eeb152ec453a5f8610f1d2161382175c1471/pygom-0.1.7.tar.gz#sha256=34bb9d154cbb2770e135d918ebbbc8d8e22c44c54456e42c5642f0d2e98425c2 to build tracker '/tmp/pip-req-tracker-w0_h4q5h' 2021-07-16T10:44:17,686 Running setup.py (path:/tmp/pip-wheel-sko4ha9b/pygom_f182a2a57e9b42869f2ded53a64308df/setup.py) egg_info for package pygom 2021-07-16T10:44:17,687 Created temporary directory: /tmp/pip-pip-egg-info-kkuv6twe 2021-07-16T10:44:17,687 Running command python setup.py egg_info 2021-07-16T10:44:22,202 running egg_info 2021-07-16T10:44:22,204 creating /tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info 2021-07-16T10:44:22,205 writing /tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/PKG-INFO 2021-07-16T10:44:22,208 writing dependency_links to /tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/dependency_links.txt 2021-07-16T10:44:22,210 writing requirements to /tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/requires.txt 2021-07-16T10:44:22,211 writing top-level names to /tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/top_level.txt 2021-07-16T10:44:22,212 writing manifest file '/tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/SOURCES.txt' 2021-07-16T10:44:22,421 reading manifest file '/tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/SOURCES.txt' 2021-07-16T10:44:22,423 reading manifest template 'MANIFEST.in' 2021-07-16T10:44:22,425 warning: no files found matching 'data/*.json' 2021-07-16T10:44:22,425 adding license file 'LICENSE.txt' 2021-07-16T10:44:22,429 writing manifest file '/tmp/pip-pip-egg-info-kkuv6twe/pygom.egg-info/SOURCES.txt' 2021-07-16T10:44:22,547 Source in /tmp/pip-wheel-sko4ha9b/pygom_f182a2a57e9b42869f2ded53a64308df has version 0.1.7, which satisfies requirement pygom==0.1.7 from https://files.pythonhosted.org/packages/a4/32/f5eb25fd1ee4e2fa2d4a71a9eeb152ec453a5f8610f1d2161382175c1471/pygom-0.1.7.tar.gz#sha256=34bb9d154cbb2770e135d918ebbbc8d8e22c44c54456e42c5642f0d2e98425c2 2021-07-16T10:44:22,548 Removed pygom==0.1.7 from https://files.pythonhosted.org/packages/a4/32/f5eb25fd1ee4e2fa2d4a71a9eeb152ec453a5f8610f1d2161382175c1471/pygom-0.1.7.tar.gz#sha256=34bb9d154cbb2770e135d918ebbbc8d8e22c44c54456e42c5642f0d2e98425c2 from build tracker '/tmp/pip-req-tracker-w0_h4q5h' 2021-07-16T10:44:22,552 Created temporary directory: /tmp/pip-unpack-fh361l_v 2021-07-16T10:44:22,553 Building wheels for collected packages: pygom 2021-07-16T10:44:22,557 Created temporary directory: /tmp/pip-wheel-5wp5s0y_ 2021-07-16T10:44:22,557 Building wheel for pygom (setup.py): started 2021-07-16T10:44:22,557 Destination directory: /tmp/pip-wheel-5wp5s0y_ 2021-07-16T10:44:22,558 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sko4ha9b/pygom_f182a2a57e9b42869f2ded53a64308df/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sko4ha9b/pygom_f182a2a57e9b42869f2ded53a64308df/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5wp5s0y_ 2021-07-16T10:44:24,764 running bdist_wheel 2021-07-16T10:44:24,769 running build 2021-07-16T10:44:24,769 running build_py 2021-07-16T10:44:24,927 creating build 2021-07-16T10:44:24,927 creating build/lib.linux-armv7l-3.9 2021-07-16T10:44:24,928 creating build/lib.linux-armv7l-3.9/pygom 2021-07-16T10:44:24,929 copying pygom/__init__.py -> build/lib.linux-armv7l-3.9/pygom 2021-07-16T10:44:24,932 creating build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,933 copying pygom/model/epi_analysis.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,935 copying pygom/model/stochastic_simulation.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,938 copying pygom/model/simulate.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,941 copying pygom/model/_ode_composition.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,944 copying pygom/model/__init__.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,945 copying pygom/model/_model_verification.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,948 copying pygom/model/deterministic.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,952 copying pygom/model/base_ode_model.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,955 copying pygom/model/common_models.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,958 copying pygom/model/transition.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,961 copying pygom/model/_model_errors.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,963 copying pygom/model/ode_variable.py -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:24,966 creating build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,966 copying pygom/model/ode_utils/plot_det.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,969 copying pygom/model/ode_utils/plot_stoc.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,971 copying pygom/model/ode_utils/__init__.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,974 copying pygom/model/ode_utils/checks_and_conversions.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,976 copying pygom/model/ode_utils/compile_canary.py -> build/lib.linux-armv7l-3.9/pygom/model/ode_utils 2021-07-16T10:44:24,979 creating build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,980 copying pygom/loss/read_epijson.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,983 copying pygom/loss/base_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,987 copying pygom/loss/confidence_interval.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,990 copying pygom/loss/__init__.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,992 copying pygom/loss/epijson_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,994 copying pygom/loss/ode_loss.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,996 copying pygom/loss/get_init.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:24,999 copying pygom/loss/loss_type.py -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:25,002 creating build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-16T10:44:25,003 copying pygom/utilR/__init__.py -> build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-16T10:44:25,005 copying pygom/utilR/distn.py -> build/lib.linux-armv7l-3.9/pygom/utilR 2021-07-16T10:44:25,008 running egg_info 2021-07-16T10:44:25,012 writing pygom.egg-info/PKG-INFO 2021-07-16T10:44:25,014 writing dependency_links to pygom.egg-info/dependency_links.txt 2021-07-16T10:44:25,016 writing requirements to pygom.egg-info/requires.txt 2021-07-16T10:44:25,017 writing top-level names to pygom.egg-info/top_level.txt 2021-07-16T10:44:25,060 reading manifest file 'pygom.egg-info/SOURCES.txt' 2021-07-16T10:44:25,079 reading manifest template 'MANIFEST.in' 2021-07-16T10:44:25,080 warning: no files found matching 'data/*.json' 2021-07-16T10:44:25,080 adding license file 'LICENSE.txt' 2021-07-16T10:44:25,089 writing manifest file 'pygom.egg-info/SOURCES.txt' 2021-07-16T10:44:25,095 creating build/lib.linux-armv7l-3.9/pygom/approximate_bayesian_computation 2021-07-16T10:44:25,096 copying pygom/approximate_bayesian_computation/__init__.py -> build/lib.linux-armv7l-3.9/pygom/approximate_bayesian_computation 2021-07-16T10:44:25,099 copying pygom/approximate_bayesian_computation/approximate_bayesian_computation.py -> build/lib.linux-armv7l-3.9/pygom/approximate_bayesian_computation 2021-07-16T10:44:25,102 creating build/lib.linux-armv7l-3.9/pygom/data 2021-07-16T10:44:25,103 copying pygom/data/eg1.json -> build/lib.linux-armv7l-3.9/pygom/data 2021-07-16T10:44:25,106 copying pygom/model/_tau_leap.c -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:25,129 copying pygom/model/_tau_leap.pyx -> build/lib.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:25,132 copying pygom/loss/.gitignore -> build/lib.linux-armv7l-3.9/pygom/loss 2021-07-16T10:44:25,141 running build_ext 2021-07-16T10:44:25,208 skipping 'pygom/model/_tau_leap.c' Cython extension (up-to-date) 2021-07-16T10:44:25,209 building 'pygom.model._tau_leap' extension 2021-07-16T10:44:25,209 creating build/temp.linux-armv7l-3.9 2021-07-16T10:44:25,210 creating build/temp.linux-armv7l-3.9/pygom 2021-07-16T10:44:25,210 creating build/temp.linux-armv7l-3.9/pygom/model 2021-07-16T10:44:25,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c pygom/model/_tau_leap.c -o build/temp.linux-armv7l-3.9/pygom/model/_tau_leap.o 2021-07-16T10:44:25,614 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T10:44:25,615 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T10:44:25,615 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T10:44:25,615 from pygom/model/_tau_leap.c:598: 2021-07-16T10:44:25,615 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T10:44:25,615 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T10:44:25,615 | ^~~~~~~ 2021-07-16T10:44:25,986 pygom/model/_tau_leap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-16T10:44:25,996 pygom/model/_tau_leap.c:20313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:25,996 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:25,996 | ^ 2021-07-16T10:44:25,997 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:25,997 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:25,997 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:25,997 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:25,998 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:25,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,010 pygom/model/_tau_leap.c:20313:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,010 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,010 | ^ 2021-07-16T10:44:26,010 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,010 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,011 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,011 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T10:44:26,011 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T10:44:26,011 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,023 pygom/model/_tau_leap.c:20313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,023 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,023 | ^ 2021-07-16T10:44:26,024 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,024 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,024 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,024 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,024 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,024 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,036 pygom/model/_tau_leap.c:20313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,037 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,037 | ^ 2021-07-16T10:44:26,037 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,037 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,037 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,037 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,037 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,050 pygom/model/_tau_leap.c:20313:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,050 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,050 | ^ 2021-07-16T10:44:26,050 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,050 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,050 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,051 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T10:44:26,051 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T10:44:26,051 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,063 pygom/model/_tau_leap.c:20313:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,063 20313 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,063 | ^ 2021-07-16T10:44:26,063 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,063 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,064 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,064 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,064 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,064 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,078 pygom/model/_tau_leap.c:20329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,079 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,079 | ^ 2021-07-16T10:44:26,079 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,079 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,079 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,079 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,079 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,080 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,092 pygom/model/_tau_leap.c:20329:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,092 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,092 | ^ 2021-07-16T10:44:26,092 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,092 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,093 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,093 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T10:44:26,093 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T10:44:26,093 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,105 pygom/model/_tau_leap.c:20329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,105 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,105 | ^ 2021-07-16T10:44:26,106 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,106 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,106 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,106 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,106 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,106 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,118 pygom/model/_tau_leap.c:20329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,119 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,119 | ^ 2021-07-16T10:44:26,119 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,119 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,119 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,119 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,119 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,119 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,132 pygom/model/_tau_leap.c:20329:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,132 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,132 | ^ 2021-07-16T10:44:26,132 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,132 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,132 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,132 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T10:44:26,133 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T10:44:26,133 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,144 pygom/model/_tau_leap.c:20329:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,144 20329 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T10:44:26,144 | ^ 2021-07-16T10:44:26,145 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,145 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,145 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,145 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T10:44:26,145 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T10:44:26,145 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:26,425 pygom/model/_tau_leap.c: In function ‘__Pyx_decode_c_string’: 2021-07-16T10:44:26,436 pygom/model/_tau_leap.c:22097:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T10:44:26,436 22097 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-16T10:44:26,437 | ^~~~~~ 2021-07-16T10:44:26,437 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T10:44:26,437 from /usr/include/python3.9/Python.h:97, 2021-07-16T10:44:26,437 from pygom/model/_tau_leap.c:4: 2021-07-16T10:44:26,437 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-16T10:44:26,437 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-16T10:44:26,437 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-16T10:44:34,738 pygom/model/_tau_leap.c: In function ‘__pyx_pf_5pygom_5model_9_tau_leap__cy_test_tau_leap_safety.constprop’: 2021-07-16T10:44:34,740 pygom/model/_tau_leap.c:2895:12: warning: ‘__pyx_v_new_cdf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-16T10:44:34,740 2895 | if (__pyx_t_7) { 2021-07-16T10:44:34,740 | ^ 2021-07-16T10:44:38,459 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pygom/model/_tau_leap.o -o build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so 2021-07-16T10:44:38,647 installing to build/bdist.linux-armv7l/wheel 2021-07-16T10:44:38,647 running install 2021-07-16T10:44:38,648 running install_lib 2021-07-16T10:44:38,653 creating build/bdist.linux-armv7l 2021-07-16T10:44:38,653 creating build/bdist.linux-armv7l/wheel 2021-07-16T10:44:38,655 creating build/bdist.linux-armv7l/wheel/pygom 2021-07-16T10:44:38,656 copying build/lib.linux-armv7l-3.9/pygom/__init__.py -> build/bdist.linux-armv7l/wheel/pygom 2021-07-16T10:44:38,659 creating build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-16T10:44:38,660 copying build/lib.linux-armv7l-3.9/pygom/utilR/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-16T10:44:38,662 copying build/lib.linux-armv7l-3.9/pygom/utilR/distn.py -> build/bdist.linux-armv7l/wheel/pygom/utilR 2021-07-16T10:44:38,666 creating build/bdist.linux-armv7l/wheel/pygom/data 2021-07-16T10:44:38,666 copying build/lib.linux-armv7l-3.9/pygom/data/eg1.json -> build/bdist.linux-armv7l/wheel/pygom/data 2021-07-16T10:44:38,669 creating build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,670 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.pyx -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,672 copying build/lib.linux-armv7l-3.9/pygom/model/epi_analysis.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,675 copying build/lib.linux-armv7l-3.9/pygom/model/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,677 copying build/lib.linux-armv7l-3.9/pygom/model/simulate.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,681 creating build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,682 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/plot_det.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,685 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/plot_stoc.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,687 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,690 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/checks_and_conversions.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,692 copying build/lib.linux-armv7l-3.9/pygom/model/ode_utils/compile_canary.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils 2021-07-16T10:44:38,694 copying build/lib.linux-armv7l-3.9/pygom/model/_ode_composition.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,697 copying build/lib.linux-armv7l-3.9/pygom/model/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,699 copying build/lib.linux-armv7l-3.9/pygom/model/_model_verification.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,701 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.c -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,727 copying build/lib.linux-armv7l-3.9/pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,756 copying build/lib.linux-armv7l-3.9/pygom/model/deterministic.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,761 copying build/lib.linux-armv7l-3.9/pygom/model/base_ode_model.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,765 copying build/lib.linux-armv7l-3.9/pygom/model/common_models.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,769 copying build/lib.linux-armv7l-3.9/pygom/model/transition.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,772 copying build/lib.linux-armv7l-3.9/pygom/model/_model_errors.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,774 copying build/lib.linux-armv7l-3.9/pygom/model/ode_variable.py -> build/bdist.linux-armv7l/wheel/pygom/model 2021-07-16T10:44:38,777 creating build/bdist.linux-armv7l/wheel/pygom/approximate_bayesian_computation 2021-07-16T10:44:38,778 copying build/lib.linux-armv7l-3.9/pygom/approximate_bayesian_computation/approximate_bayesian_computation.py -> build/bdist.linux-armv7l/wheel/pygom/approximate_bayesian_computation 2021-07-16T10:44:38,782 copying build/lib.linux-armv7l-3.9/pygom/approximate_bayesian_computation/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/approximate_bayesian_computation 2021-07-16T10:44:38,785 creating build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,786 copying build/lib.linux-armv7l-3.9/pygom/loss/read_epijson.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,790 copying build/lib.linux-armv7l-3.9/pygom/loss/base_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,794 copying build/lib.linux-armv7l-3.9/pygom/loss/confidence_interval.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,798 copying build/lib.linux-armv7l-3.9/pygom/loss/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,800 copying build/lib.linux-armv7l-3.9/pygom/loss/epijson_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,802 copying build/lib.linux-armv7l-3.9/pygom/loss/ode_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,805 copying build/lib.linux-armv7l-3.9/pygom/loss/get_init.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,808 copying build/lib.linux-armv7l-3.9/pygom/loss/loss_type.py -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,811 copying build/lib.linux-armv7l-3.9/pygom/loss/.gitignore -> build/bdist.linux-armv7l/wheel/pygom/loss 2021-07-16T10:44:38,813 running install_egg_info 2021-07-16T10:44:38,822 Copying pygom.egg-info to build/bdist.linux-armv7l/wheel/pygom-0.1.7-py3.9.egg-info 2021-07-16T10:44:38,834 running install_scripts 2021-07-16T10:44:38,923 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-16T10:44:38,929 creating build/bdist.linux-armv7l/wheel/pygom-0.1.7.dist-info/WHEEL 2021-07-16T10:44:38,932 creating '/tmp/pip-wheel-5wp5s0y_/pygom-0.1.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T10:44:38,934 adding 'pygom/__init__.py' 2021-07-16T10:44:38,937 adding 'pygom/approximate_bayesian_computation/__init__.py' 2021-07-16T10:44:38,941 adding 'pygom/approximate_bayesian_computation/approximate_bayesian_computation.py' 2021-07-16T10:44:38,944 adding 'pygom/data/eg1.json' 2021-07-16T10:44:38,946 adding 'pygom/loss/.gitignore' 2021-07-16T10:44:38,948 adding 'pygom/loss/__init__.py' 2021-07-16T10:44:38,955 adding 'pygom/loss/base_loss.py' 2021-07-16T10:44:38,959 adding 'pygom/loss/confidence_interval.py' 2021-07-16T10:44:38,961 adding 'pygom/loss/epijson_loss.py' 2021-07-16T10:44:38,963 adding 'pygom/loss/get_init.py' 2021-07-16T10:44:38,965 adding 'pygom/loss/loss_type.py' 2021-07-16T10:44:38,967 adding 'pygom/loss/ode_loss.py' 2021-07-16T10:44:38,969 adding 'pygom/loss/read_epijson.py' 2021-07-16T10:44:38,971 adding 'pygom/model/__init__.py' 2021-07-16T10:44:38,973 adding 'pygom/model/_model_errors.py' 2021-07-16T10:44:38,974 adding 'pygom/model/_model_verification.py' 2021-07-16T10:44:38,977 adding 'pygom/model/_ode_composition.py' 2021-07-16T10:44:39,055 adding 'pygom/model/_tau_leap.c' 2021-07-16T10:44:39,236 adding 'pygom/model/_tau_leap.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T10:44:39,244 adding 'pygom/model/_tau_leap.pyx' 2021-07-16T10:44:39,249 adding 'pygom/model/base_ode_model.py' 2021-07-16T10:44:39,253 adding 'pygom/model/common_models.py' 2021-07-16T10:44:39,262 adding 'pygom/model/deterministic.py' 2021-07-16T10:44:39,264 adding 'pygom/model/epi_analysis.py' 2021-07-16T10:44:39,266 adding 'pygom/model/ode_variable.py' 2021-07-16T10:44:39,270 adding 'pygom/model/simulate.py' 2021-07-16T10:44:39,274 adding 'pygom/model/stochastic_simulation.py' 2021-07-16T10:44:39,276 adding 'pygom/model/transition.py' 2021-07-16T10:44:39,280 adding 'pygom/model/ode_utils/__init__.py' 2021-07-16T10:44:39,282 adding 'pygom/model/ode_utils/checks_and_conversions.py' 2021-07-16T10:44:39,284 adding 'pygom/model/ode_utils/compile_canary.py' 2021-07-16T10:44:39,286 adding 'pygom/model/ode_utils/plot_det.py' 2021-07-16T10:44:39,288 adding 'pygom/model/ode_utils/plot_stoc.py' 2021-07-16T10:44:39,290 adding 'pygom/utilR/__init__.py' 2021-07-16T10:44:39,292 adding 'pygom/utilR/distn.py' 2021-07-16T10:44:39,296 adding 'pygom-0.1.7.dist-info/LICENSE.txt' 2021-07-16T10:44:39,298 adding 'pygom-0.1.7.dist-info/METADATA' 2021-07-16T10:44:39,299 adding 'pygom-0.1.7.dist-info/WHEEL' 2021-07-16T10:44:39,301 adding 'pygom-0.1.7.dist-info/top_level.txt' 2021-07-16T10:44:39,302 adding 'pygom-0.1.7.dist-info/RECORD' 2021-07-16T10:44:39,316 removing build/bdist.linux-armv7l/wheel 2021-07-16T10:44:39,467 Building wheel for pygom (setup.py): finished with status 'done' 2021-07-16T10:44:39,476 Created wheel for pygom: filename=pygom-0.1.7-cp39-cp39-linux_armv7l.whl size=542607 sha256=99c400455b7ba6e4e298b15755f30b903b78d5f197679439a05e3f69f65394a5 2021-07-16T10:44:39,476 Stored in directory: /tmp/pip-ephem-wheel-cache-mkudke__/wheels/29/f6/9a/df4b739ae1c9e80e96de3d41344996eb7eeadbfe721a76bae5 2021-07-16T10:44:39,487 Successfully built pygom 2021-07-16T10:44:39,507 Removed build tracker: '/tmp/pip-req-tracker-w0_h4q5h'