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https://files.pythonhosted.org/packages/f1/ac/41f8b60ac02148aa15113fc68b6b119c4ca65a06f02676c35d54755d0f7f/scikit_allel-1.3.4-cp39-cp39-win_amd64.whl#sha256=18dede08d8093774c3374ef3d9dadb12111f7395129c43d781cfecb31e2f85da (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,382 Found link https://files.pythonhosted.org/packages/13/5f/4a45c9d788cf74eb5a6536ceab78ff72806ac36dfed07abb54fc72f9a39f/scikit-allel-1.3.5.tar.gz#sha256=f2a1fdcd00880fbea6e0288dee5b48b4bcd8730b3fa631ff2b27b4679e45e8ed (from https://pypi.org/simple/scikit-allel/), version: 1.3.5 2021-07-16T11:25:09,383 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/9f/98/4556cf59393949781cd6e3c7e47852fe1ac65e0917bfed75111561a407f8/scikit_allel-1.3.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=6150cda81d0b3d09767ea27f7344c0eb6e02ca1d1d64d6b930511d2758145ecb (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,383 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8a/70/52e9458fa0c33c2c0786910fea66eae89e568f16e67f88ae95f2d421b6c7/scikit_allel-1.3.5-cp36-cp36m-manylinux1_x86_64.whl#sha256=437b888ea48255fce788e4bc3c717d33c00125f60ec1c727399959464028793b (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,384 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/76/c8/04592608b60a01dd7923872d8e289c4313c253f60ff38831a64eed8edf38/scikit_allel-1.3.5-cp36-cp36m-manylinux2010_x86_64.whl#sha256=cc02bdbaf252d360362496c7cffb69fd8e261f1397c03bf524b9ad37031da123 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,384 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3b/8c/63c7f6dc49d6104781924e23475bf437a3ecf54e881774f1790580f8c7c0/scikit_allel-1.3.5-cp36-cp36m-win_amd64.whl#sha256=befa08cf2ecdbc3b256570007e846643ecf3838050425696ec502cf6591ac8e9 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,385 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/49/60/01598ef64f0fd2b9b63ed1d6c3aae2a193cf2887b6bce3ab474de9eee595/scikit_allel-1.3.5-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b3249db4e557820bcf8cb1b912e9cd4000c8ab02eec7d90b3da8ca0d00e887bc (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,385 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/28/81/cd2562602f2b30b5c37289a6520d177d6ab1ed3909ecef9c8f7ad1c05201/scikit_allel-1.3.5-cp37-cp37m-manylinux1_x86_64.whl#sha256=c615c825edc19f40e0e413db34f90dee50fead46bc7ed380c89098619ca2bff7 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,385 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6c/52/415cf181cb752334153b8f5db4d79e810e2e29a868a8ebc82b451a272372/scikit_allel-1.3.5-cp37-cp37m-manylinux2010_x86_64.whl#sha256=21c10744d306b36567075f738b2549ce6d20994ab16d8162f70f2278a6db84ba (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,386 Skipping link: none of the wheel's tags (cp37-cp37m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/30/14/a77c038bf6e8435f58ea14645e7fbbe43bf08e1960b366cd3e0834f114df/scikit_allel-1.3.5-cp37-cp37m-win_amd64.whl#sha256=52d9f17b74e204c0d6a01fc16b03d3d9d95feae9ec147b90c189c4f344e290e2 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,386 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2d/4d/8942471df603fabc53d3730fae592512809474122ecadfe3bc2894abbbb0/scikit_allel-1.3.5-cp38-cp38-macosx_10_9_x86_64.whl#sha256=5b031c79139d1cc793771692108440a72052d834065cf9d45375c6917cee8988 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,387 Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): 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https://files.pythonhosted.org/packages/e9/66/6b2d0d478b35de58b6443f0273ca2b584ac00ca7c6c32e190960d0dbfba1/scikit_allel-1.3.5-cp38-cp38-win_amd64.whl#sha256=8658eef2306702338852dec10d96e9ef165ca6c54708c6356ecffc51e0f4b136 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,388 Skipping link: none of the wheel's tags (cp39-cp39-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/28/95/6aa05b075f97260db2e79db261d0ca0165035db35f354ff0c243ea50ff25/scikit_allel-1.3.5-cp39-cp39-macosx_10_9_x86_64.whl#sha256=3a7fb5cb460dfb532b41c99f3d004b3533f9d6353f9d2a24711f1a7a224f674c (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,388 Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/62/b8/822d383179aed68b308c5a9e4adcae29a81e00682b7c9e9a018930ef635f/scikit_allel-1.3.5-cp39-cp39-manylinux1_x86_64.whl#sha256=9a222c684868fb2cd91164ae472a4b78912c00bfc5eb84876f84635f829251c4 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,389 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ee/3e/ce7114ba69e8a128aeee3c6605b385ffed9bf0399c160169944c25b66df5/scikit_allel-1.3.5-cp39-cp39-manylinux2010_x86_64.whl#sha256=f951db48bdaa94df437c82d23dbe0ebdbd94e54890e5aa4cb4c4b11743b10795 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,389 Skipping link: none of the wheel's tags (cp39-cp39-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/09/66/7c2413549bc7e51ef64abb5c019e8d2296deccb7dd52a5dbd03ab0ae1806/scikit_allel-1.3.5-cp39-cp39-win_amd64.whl#sha256=5eafb694faa891668934cc0402af91e3b358c7202ee9ad554b844bc5049f6b12 (from https://pypi.org/simple/scikit-allel/) 2021-07-16T11:25:09,390 Skipping link: not a file: https://pypi.org/simple/scikit-allel/ 2021-07-16T11:25:09,398 Given no hashes to check 1 links for project 'scikit-allel': discarding no candidates 2021-07-16T11:25:09,418 Collecting scikit-allel==1.3.1 2021-07-16T11:25:09,419 Created temporary directory: /tmp/pip-unpack-t5c8bvgq 2021-07-16T11:25:13,043 Downloading scikit-allel-1.3.1.tar.gz (10.8 MB) 2021-07-16T11:25:15,600 Added scikit-allel==1.3.1 from https://files.pythonhosted.org/packages/fe/99/e8688c334218105fa0ce3ae15e6e54ac10734d65b8085872f4907a803383/scikit-allel-1.3.1.tar.gz#sha256=bac578bbe75ea6430c81c418c6a3ea58db24242a5e510e65f4926c0f381c614b to build tracker '/tmp/pip-req-tracker-m6a5_t19' 2021-07-16T11:25:15,601 Running setup.py (path:/tmp/pip-wheel-n8u_lsoy/scikit-allel_58c7090ae737471f906cd978a96dd822/setup.py) egg_info for package scikit-allel 2021-07-16T11:25:15,602 Created temporary directory: /tmp/pip-pip-egg-info-55x49i8y 2021-07-16T11:25:15,602 Running command python setup.py egg_info 2021-07-16T11:26:23,692 [scikit-allel] setup extensions with cython 2021-07-16T11:26:23,693 Compiling allel/opt/model.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T11:26:23,693 Compiling allel/opt/stats.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T11:26:23,693 Compiling allel/opt/io_vcf_read.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-16T11:26:23,694 [1/3] Cythonizing allel/opt/io_vcf_read.pyx 2021-07-16T11:26:23,694 [2/3] Cythonizing allel/opt/model.pyx 2021-07-16T11:26:23,694 [3/3] Cythonizing allel/opt/stats.pyx 2021-07-16T11:26:23,984 running egg_info 2021-07-16T11:26:23,987 creating /tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info 2021-07-16T11:26:23,988 writing /tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/PKG-INFO 2021-07-16T11:26:23,991 writing dependency_links to /tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/dependency_links.txt 2021-07-16T11:26:23,993 writing requirements to /tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/requires.txt 2021-07-16T11:26:23,994 writing top-level names to /tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/top_level.txt 2021-07-16T11:26:23,996 writing manifest file '/tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/SOURCES.txt' 2021-07-16T11:26:24,235 reading manifest file '/tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/SOURCES.txt' 2021-07-16T11:26:24,237 reading manifest template 'MANIFEST.in' 2021-07-16T11:26:24,244 no previously-included directories found matching 'docs/_build' 2021-07-16T11:26:24,253 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-16T11:26:24,255 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2021-07-16T11:26:24,256 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-16T11:26:24,256 adding license file 'LICENSE' 2021-07-16T11:26:24,265 writing manifest file '/tmp/pip-pip-egg-info-55x49i8y/scikit_allel.egg-info/SOURCES.txt' 2021-07-16T11:26:25,410 Source in /tmp/pip-wheel-n8u_lsoy/scikit-allel_58c7090ae737471f906cd978a96dd822 has version 1.3.1, which satisfies requirement scikit-allel==1.3.1 from https://files.pythonhosted.org/packages/fe/99/e8688c334218105fa0ce3ae15e6e54ac10734d65b8085872f4907a803383/scikit-allel-1.3.1.tar.gz#sha256=bac578bbe75ea6430c81c418c6a3ea58db24242a5e510e65f4926c0f381c614b 2021-07-16T11:26:25,411 Removed scikit-allel==1.3.1 from https://files.pythonhosted.org/packages/fe/99/e8688c334218105fa0ce3ae15e6e54ac10734d65b8085872f4907a803383/scikit-allel-1.3.1.tar.gz#sha256=bac578bbe75ea6430c81c418c6a3ea58db24242a5e510e65f4926c0f381c614b from build tracker '/tmp/pip-req-tracker-m6a5_t19' 2021-07-16T11:26:25,415 Created temporary directory: /tmp/pip-unpack-dpbjuai8 2021-07-16T11:26:25,416 Building wheels for collected packages: scikit-allel 2021-07-16T11:26:25,420 Created temporary directory: /tmp/pip-wheel-v2a2p4qj 2021-07-16T11:26:25,420 Building wheel for scikit-allel (setup.py): started 2021-07-16T11:26:25,420 Destination directory: /tmp/pip-wheel-v2a2p4qj 2021-07-16T11:26:25,421 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n8u_lsoy/scikit-allel_58c7090ae737471f906cd978a96dd822/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n8u_lsoy/scikit-allel_58c7090ae737471f906cd978a96dd822/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v2a2p4qj 2021-07-16T11:26:26,671 [scikit-allel] setup extensions with cython 2021-07-16T11:26:27,474 running bdist_wheel 2021-07-16T11:26:27,480 running build 2021-07-16T11:26:27,480 running build_py 2021-07-16T11:26:27,649 creating build 2021-07-16T11:26:27,650 creating build/lib.linux-armv7l-3.9 2021-07-16T11:26:27,651 creating build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,652 copying ./allel/compat.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,655 copying ./allel/abc.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,657 copying ./allel/constants.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,659 copying ./allel/plot.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,661 copying ./allel/__init__.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,663 copying ./allel/version.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,665 copying ./allel/util.py -> build/lib.linux-armv7l-3.9/allel 2021-07-16T11:26:27,669 creating build/lib.linux-armv7l-3.9/allel/test 2021-07-16T11:26:27,670 copying ./allel/test/__init__.py -> build/lib.linux-armv7l-3.9/allel/test 2021-07-16T11:26:27,672 copying ./allel/test/tools.py -> build/lib.linux-armv7l-3.9/allel/test 2021-07-16T11:26:27,674 copying ./allel/test/test_api.py -> build/lib.linux-armv7l-3.9/allel/test 2021-07-16T11:26:27,677 copying ./allel/test/test_stats.py -> build/lib.linux-armv7l-3.9/allel/test 2021-07-16T11:26:27,682 creating build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,683 copying ./allel/model/dask.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,687 copying ./allel/model/__init__.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,690 copying ./allel/model/ndarray.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,696 copying ./allel/model/util.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,699 copying ./allel/model/generic.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,703 copying ./allel/model/chunked.py -> build/lib.linux-armv7l-3.9/allel/model 2021-07-16T11:26:27,707 creating build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,709 copying ./allel/io/fasta.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,711 copying ./allel/io/vcf_write.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,714 copying ./allel/io/gff.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,717 copying ./allel/io/__init__.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,719 copying ./allel/io/vcf_read.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,724 copying ./allel/io/util.py -> build/lib.linux-armv7l-3.9/allel/io 2021-07-16T11:26:27,727 creating build/lib.linux-armv7l-3.9/allel/opt 2021-07-16T11:26:27,728 copying ./allel/opt/__init__.py -> build/lib.linux-armv7l-3.9/allel/opt 2021-07-16T11:26:27,732 creating build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,733 copying ./allel/chunked/storage_zarr.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,736 copying ./allel/chunked/storage_bcolz.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,738 copying ./allel/chunked/core.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,742 copying ./allel/chunked/__init__.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,744 copying ./allel/chunked/util.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,747 copying ./allel/chunked/storage_hdf5.py -> build/lib.linux-armv7l-3.9/allel/chunked 2021-07-16T11:26:27,751 creating build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,753 copying ./allel/stats/fst.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,757 copying ./allel/stats/misc.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,760 copying ./allel/stats/diversity.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,763 copying ./allel/stats/preprocessing.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,766 copying ./allel/stats/distance.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,769 copying ./allel/stats/hw.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,771 copying ./allel/stats/__init__.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,773 copying ./allel/stats/selection.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,777 copying ./allel/stats/ld.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,780 copying ./allel/stats/admixture.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,783 copying ./allel/stats/sf.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,786 copying ./allel/stats/mendel.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,789 copying ./allel/stats/window.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,793 copying ./allel/stats/roh.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,795 copying ./allel/stats/decomposition.py -> build/lib.linux-armv7l-3.9/allel/stats 2021-07-16T11:26:27,799 creating build/lib.linux-armv7l-3.9/allel/test/model 2021-07-16T11:26:27,800 copying ./allel/test/model/test_chunked.py -> build/lib.linux-armv7l-3.9/allel/test/model 2021-07-16T11:26:27,804 copying ./allel/test/model/__init__.py -> build/lib.linux-armv7l-3.9/allel/test/model 2021-07-16T11:26:27,806 copying ./allel/test/model/test_dask.py -> build/lib.linux-armv7l-3.9/allel/test/model 2021-07-16T11:26:27,809 copying ./allel/test/model/test_api.py -> build/lib.linux-armv7l-3.9/allel/test/model 2021-07-16T11:26:27,815 creating build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,816 copying ./allel/test/data/__init__.py -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,819 creating build/lib.linux-armv7l-3.9/allel/test/io 2021-07-16T11:26:27,820 copying ./allel/test/io/test_vcf_read.py -> build/lib.linux-armv7l-3.9/allel/test/io 2021-07-16T11:26:27,825 copying ./allel/test/io/__init__.py -> build/lib.linux-armv7l-3.9/allel/test/io 2021-07-16T11:26:27,827 copying ./allel/test/io/test_gff_read.py -> build/lib.linux-armv7l-3.9/allel/test/io 2021-07-16T11:26:27,830 creating build/lib.linux-armv7l-3.9/allel/test/stats 2021-07-16T11:26:27,831 copying ./allel/test/stats/test_mendel.py -> build/lib.linux-armv7l-3.9/allel/test/stats 2021-07-16T11:26:27,834 copying ./allel/test/stats/__init__.py -> build/lib.linux-armv7l-3.9/allel/test/stats 2021-07-16T11:26:27,836 copying ./allel/test/stats/test_selection.py -> build/lib.linux-armv7l-3.9/allel/test/stats 2021-07-16T11:26:27,839 copying ./allel/test/stats/test_sf.py -> build/lib.linux-armv7l-3.9/allel/test/stats 2021-07-16T11:26:27,842 creating build/lib.linux-armv7l-3.9/allel/test/model/ndarray 2021-07-16T11:26:27,844 copying ./allel/test/model/ndarray/test_tables.py -> build/lib.linux-armv7l-3.9/allel/test/model/ndarray 2021-07-16T11:26:27,846 copying ./allel/test/model/ndarray/__init__.py -> build/lib.linux-armv7l-3.9/allel/test/model/ndarray 2021-07-16T11:26:27,848 copying ./allel/test/model/ndarray/test_indexes.py -> build/lib.linux-armv7l-3.9/allel/test/model/ndarray 2021-07-16T11:26:27,851 copying ./allel/test/model/ndarray/test_arrays.py -> build/lib.linux-armv7l-3.9/allel/test/model/ndarray 2021-07-16T11:26:27,858 copying ./allel/test/data/test176.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,860 copying ./allel/test/data/altlen.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,863 copying ./allel/test/data/test63.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,866 copying ./allel/test/data/test16.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,868 copying ./allel/test/data/sample.gff -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,872 copying ./allel/test/data/unsorted.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,875 copying ./allel/test/data/eff.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,877 copying ./allel/test/data/sample.sorted.gff.gz.tbi -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,880 copying ./allel/test/data/test1.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,883 copying ./allel/test/data/sample.vcf.gz -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,886 copying ./allel/test/data/test14.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,889 copying ./allel/test/data/test32.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,893 copying ./allel/test/data/sample.sorted.gff.gz -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,897 copying ./allel/test/data/empty.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,899 copying ./allel/test/data/test54.vcf.gz.tbi -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,902 copying ./allel/test/data/sample.utf8.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,905 copying ./allel/test/data/sample.vcf.gz.tbi -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,908 copying ./allel/test/data/test48b.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,911 copying ./allel/test/data/test48a.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,913 copying ./allel/test/data/test54.vcf.gz -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,916 copying ./allel/test/data/sample.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,919 copying ./allel/test/data/ann.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,922 copying ./allel/test/data/test4.vcf -> build/lib.linux-armv7l-3.9/allel/test/data 2021-07-16T11:26:27,934 running build_ext 2021-07-16T11:26:28,210 building 'allel.opt.model' extension 2021-07-16T11:26:28,211 creating build/temp.linux-armv7l-3.9 2021-07-16T11:26:28,211 creating build/temp.linux-armv7l-3.9/allel 2021-07-16T11:26:28,212 creating build/temp.linux-armv7l-3.9/allel/opt 2021-07-16T11:26:28,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -c allel/opt/model.c -o build/temp.linux-armv7l-3.9/allel/opt/model.o 2021-07-16T11:26:28,632 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T11:26:28,632 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T11:26:28,632 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T11:26:28,632 from allel/opt/model.c:625: 2021-07-16T11:26:28,633 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T11:26:28,633 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T11:26:28,633 | ^~~~~~~ 2021-07-16T11:27:24,482 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/allel/opt/model.o -o build/lib.linux-armv7l-3.9/allel/opt/model.cpython-39-arm-linux-gnueabihf.so 2021-07-16T11:27:24,796 building 'allel.opt.stats' extension 2021-07-16T11:27:24,796 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -c allel/opt/stats.c -o build/temp.linux-armv7l-3.9/allel/opt/stats.o 2021-07-16T11:27:25,191 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T11:27:25,191 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T11:27:25,191 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T11:27:25,191 from allel/opt/stats.c:625: 2021-07-16T11:27:25,191 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T11:27:25,192 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T11:27:25,192 | ^~~~~~~ 2021-07-16T11:29:31,681 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/allel/opt/stats.o -o build/lib.linux-armv7l-3.9/allel/opt/stats.cpython-39-arm-linux-gnueabihf.so 2021-07-16T11:29:32,210 building 'allel.opt.io_vcf_read' extension 2021-07-16T11:29:32,210 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -c allel/opt/io_vcf_read.c -o build/temp.linux-armv7l-3.9/allel/opt/io_vcf_read.o 2021-07-16T11:29:32,655 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T11:29:32,656 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T11:29:32,656 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T11:29:32,656 from allel/opt/io_vcf_read.c:626: 2021-07-16T11:29:32,656 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T11:29:32,656 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T11:29:32,656 | ^~~~~~~ 2021-07-16T11:31:50,539 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/allel/opt/io_vcf_read.o -o build/lib.linux-armv7l-3.9/allel/opt/io_vcf_read.cpython-39-arm-linux-gnueabihf.so 2021-07-16T11:31:51,111 installing to build/bdist.linux-armv7l/wheel 2021-07-16T11:31:51,111 running install 2021-07-16T11:31:51,113 running install_lib 2021-07-16T11:31:51,122 creating build/bdist.linux-armv7l 2021-07-16T11:31:51,122 creating build/bdist.linux-armv7l/wheel 2021-07-16T11:31:51,124 creating build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,126 copying build/lib.linux-armv7l-3.9/allel/compat.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,130 creating build/bdist.linux-armv7l/wheel/allel/test 2021-07-16T11:31:51,131 creating build/bdist.linux-armv7l/wheel/allel/test/model 2021-07-16T11:31:51,133 copying build/lib.linux-armv7l-3.9/allel/test/model/test_chunked.py -> build/bdist.linux-armv7l/wheel/allel/test/model 2021-07-16T11:31:51,136 copying build/lib.linux-armv7l-3.9/allel/test/model/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test/model 2021-07-16T11:31:51,138 copying build/lib.linux-armv7l-3.9/allel/test/model/test_dask.py -> build/bdist.linux-armv7l/wheel/allel/test/model 2021-07-16T11:31:51,141 creating build/bdist.linux-armv7l/wheel/allel/test/model/ndarray 2021-07-16T11:31:51,142 copying build/lib.linux-armv7l-3.9/allel/test/model/ndarray/test_tables.py -> build/bdist.linux-armv7l/wheel/allel/test/model/ndarray 2021-07-16T11:31:51,145 copying build/lib.linux-armv7l-3.9/allel/test/model/ndarray/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test/model/ndarray 2021-07-16T11:31:51,147 copying build/lib.linux-armv7l-3.9/allel/test/model/ndarray/test_indexes.py -> build/bdist.linux-armv7l/wheel/allel/test/model/ndarray 2021-07-16T11:31:51,149 copying build/lib.linux-armv7l-3.9/allel/test/model/ndarray/test_arrays.py -> build/bdist.linux-armv7l/wheel/allel/test/model/ndarray 2021-07-16T11:31:51,151 copying build/lib.linux-armv7l-3.9/allel/test/model/test_api.py -> build/bdist.linux-armv7l/wheel/allel/test/model 2021-07-16T11:31:51,158 creating build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,159 copying build/lib.linux-armv7l-3.9/allel/test/data/test176.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,161 copying build/lib.linux-armv7l-3.9/allel/test/data/altlen.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,164 copying build/lib.linux-armv7l-3.9/allel/test/data/test63.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,166 copying build/lib.linux-armv7l-3.9/allel/test/data/test16.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,168 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.gff -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,172 copying build/lib.linux-armv7l-3.9/allel/test/data/unsorted.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,175 copying build/lib.linux-armv7l-3.9/allel/test/data/eff.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,177 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.sorted.gff.gz.tbi -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,179 copying build/lib.linux-armv7l-3.9/allel/test/data/test1.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,181 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.vcf.gz -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,183 copying build/lib.linux-armv7l-3.9/allel/test/data/test14.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,185 copying build/lib.linux-armv7l-3.9/allel/test/data/test32.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,188 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.sorted.gff.gz -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,191 copying build/lib.linux-armv7l-3.9/allel/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,193 copying build/lib.linux-armv7l-3.9/allel/test/data/empty.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,195 copying build/lib.linux-armv7l-3.9/allel/test/data/test54.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,197 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.utf8.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,199 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,201 copying build/lib.linux-armv7l-3.9/allel/test/data/test48b.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,203 copying build/lib.linux-armv7l-3.9/allel/test/data/test48a.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,205 copying build/lib.linux-armv7l-3.9/allel/test/data/test54.vcf.gz -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,207 copying build/lib.linux-armv7l-3.9/allel/test/data/sample.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,209 copying build/lib.linux-armv7l-3.9/allel/test/data/ann.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,211 copying build/lib.linux-armv7l-3.9/allel/test/data/test4.vcf -> build/bdist.linux-armv7l/wheel/allel/test/data 2021-07-16T11:31:51,214 creating build/bdist.linux-armv7l/wheel/allel/test/io 2021-07-16T11:31:51,215 copying build/lib.linux-armv7l-3.9/allel/test/io/test_vcf_read.py -> build/bdist.linux-armv7l/wheel/allel/test/io 2021-07-16T11:31:51,221 copying build/lib.linux-armv7l-3.9/allel/test/io/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test/io 2021-07-16T11:31:51,223 copying build/lib.linux-armv7l-3.9/allel/test/io/test_gff_read.py -> build/bdist.linux-armv7l/wheel/allel/test/io 2021-07-16T11:31:51,225 copying build/lib.linux-armv7l-3.9/allel/test/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test 2021-07-16T11:31:51,227 copying build/lib.linux-armv7l-3.9/allel/test/tools.py -> build/bdist.linux-armv7l/wheel/allel/test 2021-07-16T11:31:51,230 creating build/bdist.linux-armv7l/wheel/allel/test/stats 2021-07-16T11:31:51,231 copying build/lib.linux-armv7l-3.9/allel/test/stats/test_mendel.py -> build/bdist.linux-armv7l/wheel/allel/test/stats 2021-07-16T11:31:51,234 copying build/lib.linux-armv7l-3.9/allel/test/stats/__init__.py -> build/bdist.linux-armv7l/wheel/allel/test/stats 2021-07-16T11:31:51,235 copying build/lib.linux-armv7l-3.9/allel/test/stats/test_selection.py -> build/bdist.linux-armv7l/wheel/allel/test/stats 2021-07-16T11:31:51,238 copying build/lib.linux-armv7l-3.9/allel/test/stats/test_sf.py -> build/bdist.linux-armv7l/wheel/allel/test/stats 2021-07-16T11:31:51,240 copying build/lib.linux-armv7l-3.9/allel/test/test_api.py -> build/bdist.linux-armv7l/wheel/allel/test 2021-07-16T11:31:51,242 copying build/lib.linux-armv7l-3.9/allel/test/test_stats.py -> build/bdist.linux-armv7l/wheel/allel/test 2021-07-16T11:31:51,245 copying build/lib.linux-armv7l-3.9/allel/abc.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,248 copying build/lib.linux-armv7l-3.9/allel/constants.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,251 creating build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,252 copying build/lib.linux-armv7l-3.9/allel/model/dask.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,255 copying build/lib.linux-armv7l-3.9/allel/model/__init__.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,258 copying build/lib.linux-armv7l-3.9/allel/model/ndarray.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,264 copying build/lib.linux-armv7l-3.9/allel/model/util.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,266 copying build/lib.linux-armv7l-3.9/allel/model/generic.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,269 copying build/lib.linux-armv7l-3.9/allel/model/chunked.py -> build/bdist.linux-armv7l/wheel/allel/model 2021-07-16T11:31:51,273 creating build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,274 copying build/lib.linux-armv7l-3.9/allel/io/fasta.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,276 copying build/lib.linux-armv7l-3.9/allel/io/vcf_write.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,278 copying build/lib.linux-armv7l-3.9/allel/io/gff.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,281 copying build/lib.linux-armv7l-3.9/allel/io/__init__.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,283 copying build/lib.linux-armv7l-3.9/allel/io/vcf_read.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,287 copying build/lib.linux-armv7l-3.9/allel/io/util.py -> build/bdist.linux-armv7l/wheel/allel/io 2021-07-16T11:31:51,290 creating build/bdist.linux-armv7l/wheel/allel/opt 2021-07-16T11:31:51,291 copying build/lib.linux-armv7l-3.9/allel/opt/io_vcf_read.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/allel/opt 2021-07-16T11:31:51,435 copying build/lib.linux-armv7l-3.9/allel/opt/__init__.py -> build/bdist.linux-armv7l/wheel/allel/opt 2021-07-16T11:31:51,437 copying build/lib.linux-armv7l-3.9/allel/opt/model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/allel/opt 2021-07-16T11:31:51,509 copying build/lib.linux-armv7l-3.9/allel/opt/stats.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/allel/opt 2021-07-16T11:31:51,643 copying build/lib.linux-armv7l-3.9/allel/plot.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,645 copying build/lib.linux-armv7l-3.9/allel/__init__.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,646 copying build/lib.linux-armv7l-3.9/allel/version.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,648 creating build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,649 copying build/lib.linux-armv7l-3.9/allel/chunked/storage_zarr.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,651 copying build/lib.linux-armv7l-3.9/allel/chunked/storage_bcolz.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,653 copying build/lib.linux-armv7l-3.9/allel/chunked/core.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,656 copying build/lib.linux-armv7l-3.9/allel/chunked/__init__.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,658 copying build/lib.linux-armv7l-3.9/allel/chunked/util.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,660 copying build/lib.linux-armv7l-3.9/allel/chunked/storage_hdf5.py -> build/bdist.linux-armv7l/wheel/allel/chunked 2021-07-16T11:31:51,664 creating build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,665 copying build/lib.linux-armv7l-3.9/allel/stats/fst.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,668 copying build/lib.linux-armv7l-3.9/allel/stats/misc.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,671 copying build/lib.linux-armv7l-3.9/allel/stats/diversity.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,675 copying build/lib.linux-armv7l-3.9/allel/stats/preprocessing.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,677 copying build/lib.linux-armv7l-3.9/allel/stats/distance.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,680 copying build/lib.linux-armv7l-3.9/allel/stats/hw.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,682 copying build/lib.linux-armv7l-3.9/allel/stats/__init__.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,685 copying build/lib.linux-armv7l-3.9/allel/stats/selection.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,688 copying build/lib.linux-armv7l-3.9/allel/stats/ld.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,691 copying build/lib.linux-armv7l-3.9/allel/stats/admixture.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,694 copying build/lib.linux-armv7l-3.9/allel/stats/sf.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,698 copying build/lib.linux-armv7l-3.9/allel/stats/mendel.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,700 copying build/lib.linux-armv7l-3.9/allel/stats/window.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,704 copying build/lib.linux-armv7l-3.9/allel/stats/roh.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,706 copying build/lib.linux-armv7l-3.9/allel/stats/decomposition.py -> build/bdist.linux-armv7l/wheel/allel/stats 2021-07-16T11:31:51,709 copying build/lib.linux-armv7l-3.9/allel/util.py -> build/bdist.linux-armv7l/wheel/allel 2021-07-16T11:31:51,711 running install_egg_info 2021-07-16T11:31:51,738 running egg_info 2021-07-16T11:31:51,739 writing scikit_allel.egg-info/PKG-INFO 2021-07-16T11:31:51,741 writing dependency_links to scikit_allel.egg-info/dependency_links.txt 2021-07-16T11:31:51,743 writing requirements to scikit_allel.egg-info/requires.txt 2021-07-16T11:31:51,744 writing top-level names to scikit_allel.egg-info/top_level.txt 2021-07-16T11:31:51,808 reading manifest file 'scikit_allel.egg-info/SOURCES.txt' 2021-07-16T11:31:51,836 reading manifest template 'MANIFEST.in' 2021-07-16T11:31:51,842 no previously-included directories found matching 'docs/_build' 2021-07-16T11:31:51,851 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-16T11:31:51,853 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2021-07-16T11:31:51,855 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-16T11:31:51,855 adding license file 'LICENSE' 2021-07-16T11:31:51,870 writing manifest file 'scikit_allel.egg-info/SOURCES.txt' 2021-07-16T11:31:51,872 Copying scikit_allel.egg-info to build/bdist.linux-armv7l/wheel/scikit_allel-1.3.1-py3.9.egg-info 2021-07-16T11:31:51,886 running install_scripts 2021-07-16T11:31:51,941 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-16T11:31:51,946 creating build/bdist.linux-armv7l/wheel/scikit_allel-1.3.1.dist-info/WHEEL 2021-07-16T11:31:51,949 creating '/tmp/pip-wheel-v2a2p4qj/scikit_allel-1.3.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T11:31:51,952 adding 'allel/__init__.py' 2021-07-16T11:31:51,954 adding 'allel/abc.py' 2021-07-16T11:31:51,955 adding 'allel/compat.py' 2021-07-16T11:31:51,957 adding 'allel/constants.py' 2021-07-16T11:31:51,958 adding 'allel/plot.py' 2021-07-16T11:31:51,960 adding 'allel/util.py' 2021-07-16T11:31:51,961 adding 'allel/version.py' 2021-07-16T11:31:51,963 adding 'allel/chunked/__init__.py' 2021-07-16T11:31:51,967 adding 'allel/chunked/core.py' 2021-07-16T11:31:51,969 adding 'allel/chunked/storage_bcolz.py' 2021-07-16T11:31:51,970 adding 'allel/chunked/storage_hdf5.py' 2021-07-16T11:31:51,972 adding 'allel/chunked/storage_zarr.py' 2021-07-16T11:31:51,973 adding 'allel/chunked/util.py' 2021-07-16T11:31:51,975 adding 'allel/io/__init__.py' 2021-07-16T11:31:51,976 adding 'allel/io/fasta.py' 2021-07-16T11:31:51,978 adding 'allel/io/gff.py' 2021-07-16T11:31:51,980 adding 'allel/io/util.py' 2021-07-16T11:31:51,987 adding 'allel/io/vcf_read.py' 2021-07-16T11:31:51,989 adding 'allel/io/vcf_write.py' 2021-07-16T11:31:51,991 adding 'allel/model/__init__.py' 2021-07-16T11:31:51,994 adding 'allel/model/chunked.py' 2021-07-16T11:31:51,998 adding 'allel/model/dask.py' 2021-07-16T11:31:52,000 adding 'allel/model/generic.py' 2021-07-16T11:31:52,014 adding 'allel/model/ndarray.py' 2021-07-16T11:31:52,016 adding 'allel/model/util.py' 2021-07-16T11:31:52,018 adding 'allel/opt/__init__.py' 2021-07-16T11:31:53,273 adding 'allel/opt/io_vcf_read.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T11:31:53,879 adding 'allel/opt/model.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T11:31:55,009 adding 'allel/opt/stats.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T11:31:55,069 adding 'allel/stats/__init__.py' 2021-07-16T11:31:55,071 adding 'allel/stats/admixture.py' 2021-07-16T11:31:55,072 adding 'allel/stats/decomposition.py' 2021-07-16T11:31:55,074 adding 'allel/stats/distance.py' 2021-07-16T11:31:55,078 adding 'allel/stats/diversity.py' 2021-07-16T11:31:55,080 adding 'allel/stats/fst.py' 2021-07-16T11:31:55,082 adding 'allel/stats/hw.py' 2021-07-16T11:31:55,084 adding 'allel/stats/ld.py' 2021-07-16T11:31:55,086 adding 'allel/stats/mendel.py' 2021-07-16T11:31:55,088 adding 'allel/stats/misc.py' 2021-07-16T11:31:55,089 adding 'allel/stats/preprocessing.py' 2021-07-16T11:31:55,091 adding 'allel/stats/roh.py' 2021-07-16T11:31:55,096 adding 'allel/stats/selection.py' 2021-07-16T11:31:55,098 adding 'allel/stats/sf.py' 2021-07-16T11:31:55,101 adding 'allel/stats/window.py' 2021-07-16T11:31:55,103 adding 'allel/test/__init__.py' 2021-07-16T11:31:55,104 adding 'allel/test/test_api.py' 2021-07-16T11:31:55,107 adding 'allel/test/test_stats.py' 2021-07-16T11:31:55,109 adding 'allel/test/tools.py' 2021-07-16T11:31:55,111 adding 'allel/test/data/__init__.py' 2021-07-16T11:31:55,112 adding 'allel/test/data/altlen.vcf' 2021-07-16T11:31:55,114 adding 'allel/test/data/ann.vcf' 2021-07-16T11:31:55,115 adding 'allel/test/data/eff.vcf' 2021-07-16T11:31:55,116 adding 'allel/test/data/empty.vcf' 2021-07-16T11:31:55,119 adding 'allel/test/data/sample.gff' 2021-07-16T11:31:55,121 adding 'allel/test/data/sample.sorted.gff.gz' 2021-07-16T11:31:55,122 adding 'allel/test/data/sample.sorted.gff.gz.tbi' 2021-07-16T11:31:55,123 adding 'allel/test/data/sample.utf8.vcf' 2021-07-16T11:31:55,124 adding 'allel/test/data/sample.vcf' 2021-07-16T11:31:55,126 adding 'allel/test/data/sample.vcf.gz' 2021-07-16T11:31:55,127 adding 'allel/test/data/sample.vcf.gz.tbi' 2021-07-16T11:31:55,128 adding 'allel/test/data/test1.vcf' 2021-07-16T11:31:55,129 adding 'allel/test/data/test14.vcf' 2021-07-16T11:31:55,131 adding 'allel/test/data/test16.vcf' 2021-07-16T11:31:55,132 adding 'allel/test/data/test176.vcf' 2021-07-16T11:31:55,136 adding 'allel/test/data/test32.vcf' 2021-07-16T11:31:55,137 adding 'allel/test/data/test4.vcf' 2021-07-16T11:31:55,139 adding 'allel/test/data/test48a.vcf' 2021-07-16T11:31:55,140 adding 'allel/test/data/test48b.vcf' 2021-07-16T11:31:55,141 adding 'allel/test/data/test54.vcf.gz' 2021-07-16T11:31:55,142 adding 'allel/test/data/test54.vcf.gz.tbi' 2021-07-16T11:31:55,143 adding 'allel/test/data/test63.vcf' 2021-07-16T11:31:55,145 adding 'allel/test/data/unsorted.vcf' 2021-07-16T11:31:55,147 adding 'allel/test/io/__init__.py' 2021-07-16T11:31:55,148 adding 'allel/test/io/test_gff_read.py' 2021-07-16T11:31:55,156 adding 'allel/test/io/test_vcf_read.py' 2021-07-16T11:31:55,159 adding 'allel/test/model/__init__.py' 2021-07-16T11:31:55,167 adding 'allel/test/model/test_api.py' 2021-07-16T11:31:55,170 adding 'allel/test/model/test_chunked.py' 2021-07-16T11:31:55,171 adding 'allel/test/model/test_dask.py' 2021-07-16T11:31:55,173 adding 'allel/test/model/ndarray/__init__.py' 2021-07-16T11:31:55,175 adding 'allel/test/model/ndarray/test_arrays.py' 2021-07-16T11:31:55,176 adding 'allel/test/model/ndarray/test_indexes.py' 2021-07-16T11:31:55,178 adding 'allel/test/model/ndarray/test_tables.py' 2021-07-16T11:31:55,180 adding 'allel/test/stats/__init__.py' 2021-07-16T11:31:55,181 adding 'allel/test/stats/test_mendel.py' 2021-07-16T11:31:55,184 adding 'allel/test/stats/test_selection.py' 2021-07-16T11:31:55,185 adding 'allel/test/stats/test_sf.py' 2021-07-16T11:31:55,187 adding 'scikit_allel-1.3.1.dist-info/LICENSE' 2021-07-16T11:31:55,188 adding 'scikit_allel-1.3.1.dist-info/METADATA' 2021-07-16T11:31:55,189 adding 'scikit_allel-1.3.1.dist-info/WHEEL' 2021-07-16T11:31:55,190 adding 'scikit_allel-1.3.1.dist-info/top_level.txt' 2021-07-16T11:31:55,192 adding 'scikit_allel-1.3.1.dist-info/RECORD' 2021-07-16T11:31:55,274 removing build/bdist.linux-armv7l/wheel 2021-07-16T11:31:55,466 Building wheel for scikit-allel (setup.py): finished with status 'done' 2021-07-16T11:31:55,546 Created wheel for scikit-allel: filename=scikit_allel-1.3.1-cp39-cp39-linux_armv7l.whl size=5937826 sha256=d78a14fb6ff79706d14742d5b92ce0b14f754de518d2e16f3f47be77eb640ada 2021-07-16T11:31:55,546 Stored in directory: /tmp/pip-ephem-wheel-cache-_gft2ak0/wheels/31/17/3a/dbb92fbbfc79131740f01b80d7bf5b5c7f95f50036eb1e686e 2021-07-16T11:31:55,562 Successfully built scikit-allel 2021-07-16T11:31:56,009 Removed build tracker: '/tmp/pip-req-tracker-m6a5_t19'