2021-07-16T12:21:10,402 Created temporary directory: /tmp/pip-ephem-wheel-cache-26j6bld3 2021-07-16T12:21:10,405 Created temporary directory: /tmp/pip-req-tracker-vl74ngxu 2021-07-16T12:21:10,406 Initialized build tracking at /tmp/pip-req-tracker-vl74ngxu 2021-07-16T12:21:10,406 Created build tracker: /tmp/pip-req-tracker-vl74ngxu 2021-07-16T12:21:10,406 Entered build tracker: /tmp/pip-req-tracker-vl74ngxu 2021-07-16T12:21:10,407 Created temporary directory: /tmp/pip-wheel-w44guw9f 2021-07-16T12:21:10,437 1 location(s) to search for versions of pastis: 2021-07-16T12:21:10,437 * https://pypi.org/simple/pastis/ 2021-07-16T12:21:10,437 Fetching project page and analyzing links: https://pypi.org/simple/pastis/ 2021-07-16T12:21:10,438 Getting page https://pypi.org/simple/pastis/ 2021-07-16T12:21:10,439 Found index url https://pypi.org/simple 2021-07-16T12:21:10,627 Found link https://files.pythonhosted.org/packages/2a/64/2bd48039f989b92789c09bb8b1cea8096e3a03b1371ed465f57016f1ddae/pastis-0.0.1.tar.gz#sha256=902028da84a51bd7369bd7c224f9533bac494d17c7ac7fd56e47273913904e99 (from https://pypi.org/simple/pastis/), version: 0.0.1 2021-07-16T12:21:10,627 Found link https://files.pythonhosted.org/packages/28/f8/e0b9e7494c953760d5cd7885f5ee462e8297a5e47ebd45397a641c98c6d1/pastis-0.1.0.tar.gz#sha256=686213587b4ac9400f5e33e7834a61d0b2541c101304b719ef5a0f1a421173ac (from https://pypi.org/simple/pastis/), version: 0.1.0 2021-07-16T12:21:10,628 Found link https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e (from https://pypi.org/simple/pastis/), version: 0.2.0 2021-07-16T12:21:10,628 Found link https://files.pythonhosted.org/packages/f3/b5/66032c37cfb1b02d06b6ae75a716c386beb7941299230392e63e0c394073/pastis-0.2.1.tar.gz#sha256=34a92b2b64d1c969a2410818f0e6e4637d2f1a63500322c4e37327f56a698550 (from https://pypi.org/simple/pastis/), version: 0.2.1 2021-07-16T12:21:10,628 Found link https://files.pythonhosted.org/packages/18/2f/4211c8e255357b542edf0f4fb39fae2668e0596d4a7b4b0f6663b1698f00/pastis-0.2.2.tar.gz#sha256=29e946688a07bdba20fa4b8a946d21616248eb78afb0c4a49daf9fbea302cb9a (from https://pypi.org/simple/pastis/), version: 0.2.2 2021-07-16T12:21:10,629 Found link https://files.pythonhosted.org/packages/41/e0/2bdc6d53d1d3a6f4036a3be6a0d32b0b172703ed0c3c1b08aaa34f241702/pastis-0.3.0.tar.gz#sha256=40734cd9ccac77bd3ff6a5e3b8808d547e5b4cda00a73349de32336df48a471e (from https://pypi.org/simple/pastis/), version: 0.3.0 2021-07-16T12:21:10,629 Found link https://files.pythonhosted.org/packages/8a/67/fcf3ec25bb6b2214c2300539fc83fa8d48f919cc95cb1135273682a09e35/pastis-0.3.2rc0.tar.gz#sha256=14c850135c08152961e3415187c6e6233f9451cb6a3f9e48a330b2000f4e44e9 (from https://pypi.org/simple/pastis/), version: 0.3.2rc0 2021-07-16T12:21:10,629 Found link https://files.pythonhosted.org/packages/a0/23/0c744480a3c3f8b3fa429dc1bf67fbc87f48b69e636dabbad1c27808f53e/pastis-0.3.2.tar.gz#sha256=f6a5bfd77bfbed28c017b28e528c9114c1a0af56141d123a30d59b9c2a0caac3 (from https://pypi.org/simple/pastis/), version: 0.3.2 2021-07-16T12:21:10,629 Found link https://files.pythonhosted.org/packages/1c/ba/ac902db422d66dc56b7f47c1e40fd8bef32ba5911a99143ce2dbdb81532a/pastis-0.3.3a0.tar.gz#sha256=51143ea5fb4057b2c9c67ede55666d797eb8e36a6ac22b2d4b2de04e04d198c9 (from https://pypi.org/simple/pastis/), version: 0.3.3a0 2021-07-16T12:21:10,630 Found link https://files.pythonhosted.org/packages/de/24/f1b8aff79784e8e1be1710faa02fe0a2129fb923692773a028d28d3353db/pastis-0.3.3.tar.gz#sha256=fadca8f3f69b55681b5b435bd2562cd1c803538a054511e11600a8fa520c892b (from https://pypi.org/simple/pastis/), version: 0.3.3 2021-07-16T12:21:10,630 Found link https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf (from https://pypi.org/simple/pastis/), version: 0.4.0 2021-07-16T12:21:10,630 Skipping link: not a file: https://pypi.org/simple/pastis/ 2021-07-16T12:21:10,650 Given no hashes to check 1 links for project 'pastis': discarding no candidates 2021-07-16T12:21:10,669 Collecting pastis==0.4.0 2021-07-16T12:21:10,670 Created temporary directory: /tmp/pip-unpack-1pekkegx 2021-07-16T12:21:13,948 Downloading pastis-0.4.0.tar.gz (28.7 MB) 2021-07-16T12:21:21,035 Added pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf to build tracker '/tmp/pip-req-tracker-vl74ngxu' 2021-07-16T12:21:21,036 Running setup.py (path:/tmp/pip-wheel-w44guw9f/pastis_a8f790ca59c74a4e950e7da5d02cf4c6/setup.py) egg_info for package pastis 2021-07-16T12:21:21,037 Created temporary directory: /tmp/pip-pip-egg-info-q2msrivd 2021-07-16T12:21:21,037 Running command python setup.py egg_info 2021-07-16T12:21:22,228 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'configuration' 2021-07-16T12:21:22,229 warnings.warn(msg) 2021-07-16T12:21:22,366 running egg_info 2021-07-16T12:21:22,369 creating /tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info 2021-07-16T12:21:22,371 writing /tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/PKG-INFO 2021-07-16T12:21:22,374 writing dependency_links to /tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/dependency_links.txt 2021-07-16T12:21:22,376 writing requirements to /tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/requires.txt 2021-07-16T12:21:22,377 writing top-level names to /tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/top_level.txt 2021-07-16T12:21:22,379 writing manifest file '/tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:22,425 reading manifest file '/tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:22,431 writing manifest file '/tmp/pip-pip-egg-info-q2msrivd/pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:22,500 Source in /tmp/pip-wheel-w44guw9f/pastis_a8f790ca59c74a4e950e7da5d02cf4c6 has version 0.4.0, which satisfies requirement pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf 2021-07-16T12:21:22,501 Removed pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf from build tracker '/tmp/pip-req-tracker-vl74ngxu' 2021-07-16T12:21:22,505 Created temporary directory: /tmp/pip-unpack-59njbo14 2021-07-16T12:21:22,506 Building wheels for collected packages: pastis 2021-07-16T12:21:22,510 Created temporary directory: /tmp/pip-wheel-342n2smb 2021-07-16T12:21:22,511 Building wheel for pastis (setup.py): started 2021-07-16T12:21:22,511 Destination directory: /tmp/pip-wheel-342n2smb 2021-07-16T12:21:22,511 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w44guw9f/pastis_a8f790ca59c74a4e950e7da5d02cf4c6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w44guw9f/pastis_a8f790ca59c74a4e950e7da5d02cf4c6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-342n2smb 2021-07-16T12:21:24,618 Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found) 2021-07-16T12:21:24,619 Appending pastis.utils configuration to pastis 2021-07-16T12:21:24,619 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils') 2021-07-16T12:21:24,620 Warning: Assuming default configuration (pastis/optimization/{setup_optimization,setup}.py was not found) 2021-07-16T12:21:24,621 Appending pastis.optimization configuration to pastis 2021-07-16T12:21:24,621 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization') 2021-07-16T12:21:24,632 Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found) 2021-07-16T12:21:24,633 Appending pastis.externals.iced.utils configuration to pastis.externals.iced 2021-07-16T12:21:24,634 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils') 2021-07-16T12:21:24,644 Appending pastis.externals.iced.datasets configuration to pastis.externals.iced 2021-07-16T12:21:24,644 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets') 2021-07-16T12:21:24,650 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2021-07-16T12:21:24,651 non-existing path in 'pastis/externals/iced/io': '../src/cblas' 2021-07-16T12:21:24,652 Appending pastis.externals.iced.io configuration to pastis.externals.iced 2021-07-16T12:21:24,652 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io') 2021-07-16T12:21:24,652 Warning: Assuming default configuration (pastis/externals/iced/normalization/{setup_normalization,setup}.py was not found) 2021-07-16T12:21:24,653 Appending pastis.externals.iced.normalization configuration to pastis.externals.iced 2021-07-16T12:21:24,654 Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.normalization') 2021-07-16T12:21:24,654 non-existing path in 'pastis/externals/iced': '../src/cblas' 2021-07-16T12:21:24,655 non-existing path in 'pastis/externals/iced': '../src/cblas' 2021-07-16T12:21:24,655 Appending pastis.externals.iced configuration to pastis.externals 2021-07-16T12:21:24,655 Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced') 2021-07-16T12:21:24,656 Appending pastis.externals configuration to pastis 2021-07-16T12:21:24,656 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals') 2021-07-16T12:21:24,656 Warning: Assuming default configuration (pastis/datasets/{setup_datasets,setup}.py was not found) 2021-07-16T12:21:24,657 Appending pastis.datasets configuration to pastis 2021-07-16T12:21:24,657 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.datasets') 2021-07-16T12:21:24,663 Warning: Assuming default configuration (pastis/io/read/{setup_read,setup}.py was not found) 2021-07-16T12:21:24,664 Appending pastis.io.read configuration to pastis.io 2021-07-16T12:21:24,665 Ignoring attempt to set 'name' (from 'pastis.io' to 'pastis.io.read') 2021-07-16T12:21:24,665 Warning: Assuming default configuration (pastis/io/write_struct/{setup_write_struct,setup}.py was not found) 2021-07-16T12:21:24,666 Appending pastis.io.write_struct configuration to pastis.io 2021-07-16T12:21:24,666 Ignoring attempt to set 'name' (from 'pastis.io' to 'pastis.io.write_struct') 2021-07-16T12:21:24,667 Appending pastis.io configuration to pastis 2021-07-16T12:21:24,667 Ignoring attempt to set 'name' (from 'pastis' to 'pastis.io') 2021-07-16T12:21:24,667 Appending pastis configuration to 2021-07-16T12:21:24,667 Ignoring attempt to set 'name' (from '' to 'pastis') 2021-07-16T12:21:24,686 running bdist_wheel 2021-07-16T12:21:24,688 running build 2021-07-16T12:21:24,688 running config_cc 2021-07-16T12:21:24,688 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2021-07-16T12:21:24,689 running config_fc 2021-07-16T12:21:24,689 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2021-07-16T12:21:24,690 running build_src 2021-07-16T12:21:24,690 build_src 2021-07-16T12:21:24,690 building extension "pastis.externals.iced.io.fastio_" sources 2021-07-16T12:21:24,690 building extension "pastis.externals.iced.io.read" sources 2021-07-16T12:21:24,690 building extension "pastis.externals.iced.normalization/_normalization_" sources 2021-07-16T12:21:24,690 building extension "pastis.externals.iced._filter_" sources 2021-07-16T12:21:24,691 building data_files sources 2021-07-16T12:21:24,692 build_src: building npy-pkg config files 2021-07-16T12:21:24,693 running build_py 2021-07-16T12:21:24,696 creating build 2021-07-16T12:21:24,696 creating build/lib.linux-armv7l-3.9 2021-07-16T12:21:24,697 creating build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,698 copying pastis/algorithms.py -> build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,701 copying pastis/config.py -> build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,703 copying pastis/setup.py -> build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,705 copying pastis/fastio.py -> build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,707 copying pastis/__init__.py -> build/lib.linux-armv7l-3.9/pastis 2021-07-16T12:21:24,710 creating build/lib.linux-armv7l-3.9/pastis/utils 2021-07-16T12:21:24,711 copying pastis/utils/bezier.py -> build/lib.linux-armv7l-3.9/pastis/utils 2021-07-16T12:21:24,713 copying pastis/utils/__init__.py -> build/lib.linux-armv7l-3.9/pastis/utils 2021-07-16T12:21:24,720 copying pastis/utils/validation.py -> build/lib.linux-armv7l-3.9/pastis/utils 2021-07-16T12:21:24,724 creating build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,725 copying pastis/optimization/constraints.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,729 copying pastis/optimization/estimate_alpha_beta.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,732 copying pastis/optimization/pastis_algorithms.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,736 copying pastis/optimization/utils.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,739 copying pastis/optimization/poisson_structure.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,742 copying pastis/optimization/piecewise_whole_genome.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,746 copying pastis/optimization/initialization.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,748 copying pastis/optimization/negative_binomial_structure.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,751 copying pastis/optimization/mds.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,754 copying pastis/optimization/__init__.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,756 copying pastis/optimization/utils_poisson.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,759 copying pastis/optimization/negative_binomial.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,761 copying pastis/optimization/callbacks.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,764 copying pastis/optimization/poisson.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,767 copying pastis/optimization/counts.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,770 copying pastis/optimization/poisson_model.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,773 copying pastis/optimization/mds_old.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,776 copying pastis/optimization/multiscale_optimization.py -> build/lib.linux-armv7l-3.9/pastis/optimization 2021-07-16T12:21:24,780 creating build/lib.linux-armv7l-3.9/pastis/externals 2021-07-16T12:21:24,782 copying pastis/externals/setup.py -> build/lib.linux-armv7l-3.9/pastis/externals 2021-07-16T12:21:24,784 copying pastis/externals/test_externals_setup.py -> build/lib.linux-armv7l-3.9/pastis/externals 2021-07-16T12:21:24,786 copying pastis/externals/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals 2021-07-16T12:21:24,790 creating build/lib.linux-armv7l-3.9/pastis/externals/iced 2021-07-16T12:21:24,791 copying pastis/externals/iced/filter.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced 2021-07-16T12:21:24,794 copying pastis/externals/iced/setup.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced 2021-07-16T12:21:24,796 copying pastis/externals/iced/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced 2021-07-16T12:21:24,800 creating build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,801 copying pastis/externals/iced/utils/_vis.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,804 copying pastis/externals/iced/utils/_validation.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,807 copying pastis/externals/iced/utils/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,809 copying pastis/externals/iced/utils/_genome.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,812 copying pastis/externals/iced/utils/validation.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/utils 2021-07-16T12:21:24,815 creating build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets 2021-07-16T12:21:24,816 copying pastis/externals/iced/datasets/setup.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets 2021-07-16T12:21:24,818 copying pastis/externals/iced/datasets/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets 2021-07-16T12:21:24,820 copying pastis/externals/iced/datasets/base.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets 2021-07-16T12:21:24,823 copying pastis/externals/iced/datasets/dldata.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets 2021-07-16T12:21:24,826 creating build/lib.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:24,827 copying pastis/externals/iced/io/_io_pandas.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:24,830 copying pastis/externals/iced/io/setup.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:24,832 copying pastis/externals/iced/io/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:24,834 copying pastis/externals/iced/io/_io_else.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:24,837 creating build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization 2021-07-16T12:21:24,839 copying pastis/externals/iced/normalization/__init__.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization 2021-07-16T12:21:24,841 copying pastis/externals/iced/normalization/_ca_utils.py -> build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization 2021-07-16T12:21:24,846 creating build/lib.linux-armv7l-3.9/pastis/datasets 2021-07-16T12:21:24,847 copying pastis/datasets/_generated_datasets.py -> build/lib.linux-armv7l-3.9/pastis/datasets 2021-07-16T12:21:24,850 copying pastis/datasets/__init__.py -> build/lib.linux-armv7l-3.9/pastis/datasets 2021-07-16T12:21:24,854 creating build/lib.linux-armv7l-3.9/pastis/io 2021-07-16T12:21:24,855 copying pastis/io/setup.py -> build/lib.linux-armv7l-3.9/pastis/io 2021-07-16T12:21:24,857 copying pastis/io/__init__.py -> build/lib.linux-armv7l-3.9/pastis/io 2021-07-16T12:21:24,860 creating build/lib.linux-armv7l-3.9/pastis/io/read 2021-07-16T12:21:24,861 copying pastis/io/read/all_data.py -> build/lib.linux-armv7l-3.9/pastis/io/read 2021-07-16T12:21:24,865 copying pastis/io/read/hiclib.py -> build/lib.linux-armv7l-3.9/pastis/io/read 2021-07-16T12:21:24,867 copying pastis/io/read/__init__.py -> build/lib.linux-armv7l-3.9/pastis/io/read 2021-07-16T12:21:24,870 creating build/lib.linux-armv7l-3.9/pastis/io/write_struct 2021-07-16T12:21:24,871 copying pastis/io/write_struct/pdb.py -> build/lib.linux-armv7l-3.9/pastis/io/write_struct 2021-07-16T12:21:24,874 copying pastis/io/write_struct/__init__.py -> build/lib.linux-armv7l-3.9/pastis/io/write_struct 2021-07-16T12:21:24,886 running build_ext 2021-07-16T12:21:24,894 customize UnixCCompiler 2021-07-16T12:21:24,896 customize UnixCCompiler using build_ext 2021-07-16T12:21:25,016 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=native) 2021-07-16T12:21:25,017 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,018 creating /tmp/tmpsjq6neoi/home 2021-07-16T12:21:25,018 creating /tmp/tmpsjq6neoi/home/piwheels 2021-07-16T12:21:25,019 creating /tmp/tmpsjq6neoi/home/piwheels/.local 2021-07-16T12:21:25,020 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib 2021-07-16T12:21:25,020 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9 2021-07-16T12:21:25,021 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages 2021-07-16T12:21:25,022 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy 2021-07-16T12:21:25,023 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils 2021-07-16T12:21:25,023 creating /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks 2021-07-16T12:21:25,024 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,024 extra options: '-march=native' 2021-07-16T12:21:25,120 CCompilerOpt.cc_test_flags[1008] : testing flags (-O3) 2021-07-16T12:21:25,121 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,121 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,121 extra options: '-O3' 2021-07-16T12:21:25,215 CCompilerOpt.cc_test_flags[1008] : testing flags (-Werror) 2021-07-16T12:21:25,215 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,215 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,216 extra options: '-Werror' 2021-07-16T12:21:25,304 CCompilerOpt.__init__[1696] : check requested baseline 2021-07-16T12:21:25,310 CCompilerOpt.__init__[1705] : check requested dispatch-able features 2021-07-16T12:21:25,317 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon) 2021-07-16T12:21:25,318 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,318 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,318 extra options: '-mfpu=neon' 2021-07-16T12:21:25,416 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-16T12:21:25,417 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,417 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,417 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2021-07-16T12:21:25,514 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-vfpv4) 2021-07-16T12:21:25,515 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,515 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,516 extra options: '-mfpu=neon-vfpv4' 2021-07-16T12:21:25,610 CCompilerOpt.feature_test[1461] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2021-07-16T12:21:25,611 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:25,611 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:25,611 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2021-07-16T12:21:26,023 CCompilerOpt.feature_test[1461] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2021-07-16T12:21:26,024 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:26,024 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:26,024 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2021-07-16T12:21:26,431 CCompilerOpt.feature_test[1461] : testing feature 'NEON' with flags (-mfpu=neon) 2021-07-16T12:21:26,431 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:26,432 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:26,432 extra options: '-mfpu=neon -Werror' 2021-07-16T12:21:26,812 CCompilerOpt.cc_test_flags[1008] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-16T12:21:26,812 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:26,812 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:26,813 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2021-07-16T12:21:26,905 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16) 2021-07-16T12:21:26,906 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:26,906 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:26,906 extra options: '-march=armv8.2-a+fp16' 2021-07-16T12:21:26,998 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2021-07-16T12:21:26,998 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:26,999 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:26,999 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2021-07-16T12:21:27,466 CCompilerOpt.feature_test[1461] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2021-07-16T12:21:27,467 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:27,467 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:27,467 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2021-07-16T12:21:27,914 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+fp16fml) 2021-07-16T12:21:27,915 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:27,915 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:27,915 extra options: '-march=armv8.2-a+fp16fml' 2021-07-16T12:21:28,010 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2021-07-16T12:21:28,011 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:28,012 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:28,012 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2021-07-16T12:21:28,443 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2021-07-16T12:21:28,443 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2021-07-16T12:21:28,443 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2021-07-16T12:21:28,443 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-16T12:21:28,443 | ^~~~~~~~~~~~~~ 2021-07-16T12:21:28,444 | vfmlal_low_f16 2021-07-16T12:21:28,444 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2021-07-16T12:21:28,444 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2021-07-16T12:21:28,444 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:28,444 | | 2021-07-16T12:21:28,444 | int 2021-07-16T12:21:28,444 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-16T12:21:28,445 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2021-07-16T12:21:28,445 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2021-07-16T12:21:28,445 | ~~~~~~~~~~~~^~~ 2021-07-16T12:21:28,445 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2021-07-16T12:21:28,445 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-16T12:21:28,445 | ^~~~~~~~~~~~~~~~ 2021-07-16T12:21:28,445 | vfmlslq_high_f16 2021-07-16T12:21:28,445 /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2021-07-16T12:21:28,446 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2021-07-16T12:21:28,446 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:28,446 | | 2021-07-16T12:21:28,446 | int 2021-07-16T12:21:28,446 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2021-07-16T12:21:28,446 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2021-07-16T12:21:28,446 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2021-07-16T12:21:28,447 | ~~~~~~~~~~~~^~~ 2021-07-16T12:21:28,447 cc1: all warnings being treated as errors 2021-07-16T12:21:28,450 CCompilerOpt.feature_test[1477] : testing failed 2021-07-16T12:21:28,458 CCompilerOpt.cc_test_flags[1008] : testing flags (-march=armv8.2-a+dotprod) 2021-07-16T12:21:28,458 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:28,458 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:28,459 extra options: '-march=armv8.2-a+dotprod' 2021-07-16T12:21:28,544 CCompilerOpt.feature_test[1461] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2021-07-16T12:21:28,545 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:28,545 compile options: '-I/usr/include/python3.9 -c' 2021-07-16T12:21:28,546 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2021-07-16T12:21:28,990 CCompilerOpt.dist_test[576] : CCompilerOpt._dist_test_spawn[711] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpsjq6neoi/home/piwheels/.local/lib/python3.9/site-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2021-07-16T12:21:28,990 /tmp/cccCW6V0.s: Assembler messages: 2021-07-16T12:21:28,991 /tmp/cccCW6V0.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2021-07-16T12:21:28,996 CCompilerOpt.feature_test[1477] : testing failed 2021-07-16T12:21:29,002 CCompilerOpt.__init__[1721] : initialize targets groups 2021-07-16T12:21:29,008 CCompilerOpt.__init__[1723] : parse target group simd_test 2021-07-16T12:21:29,014 CCompilerOpt._parse_target_tokens[1934] : skip targets (VSX2 AVX512F VSX3 XOP (FMA3 AVX2) AVX512_SKX SSE42 SSE2 VSX FMA4) not part of baseline or dispatch-able features 2021-07-16T12:21:29,020 CCompilerOpt.generate_dispatch_header[2267] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2021-07-16T12:21:29,025 CCompilerOpt.generate_dispatch_header[2276] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2021-07-16T12:21:29,031 building 'pastis.externals.iced.io.fastio_' extension 2021-07-16T12:21:29,032 compiling C sources 2021-07-16T12:21:29,032 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:29,032 creating build/temp.linux-armv7l-3.9/pastis 2021-07-16T12:21:29,033 creating build/temp.linux-armv7l-3.9/pastis/externals 2021-07-16T12:21:29,034 creating build/temp.linux-armv7l-3.9/pastis/externals/iced 2021-07-16T12:21:29,034 creating build/temp.linux-armv7l-3.9/pastis/externals/iced/io 2021-07-16T12:21:29,035 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-16T12:21:29,036 arm-linux-gnueabihf-gcc: pastis/externals/iced/io/fastio_.c 2021-07-16T12:21:29,464 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T12:21:29,464 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T12:21:29,465 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T12:21:29,465 from pastis/externals/iced/io/fastio_.c:613: 2021-07-16T12:21:29,465 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T12:21:29,465 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T12:21:29,465 | ^~~~~~~ 2021-07-16T12:21:29,507 In file included from pastis/externals/iced/io/fastio_.c:616: 2021-07-16T12:21:29,507 pastis/externals/iced/io/write.c: In function ‘write_counts’: 2021-07-16T12:21:29,507 pastis/externals/iced/io/write.c:8:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-16T12:21:29,508 8 | while(i != n_lines){ 2021-07-16T12:21:29,508 | ^~ 2021-07-16T12:21:29,508 pastis/externals/iced/io/write.c: In function ‘write_counts_int’: 2021-07-16T12:21:29,508 pastis/externals/iced/io/write.c:25:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-16T12:21:29,508 25 | while(i != n_lines){ 2021-07-16T12:21:29,508 | ^~ 2021-07-16T12:21:29,604 pastis/externals/iced/io/fastio_.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-16T12:21:29,607 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,607 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,607 | ^ 2021-07-16T12:21:29,608 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,608 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,608 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,608 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,608 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,608 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,611 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,611 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,612 | ^ 2021-07-16T12:21:29,612 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,612 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,612 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,612 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:29,612 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:29,612 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,615 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,615 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,615 | ^ 2021-07-16T12:21:29,615 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,616 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,616 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,616 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,616 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,616 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,619 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,619 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,619 | ^ 2021-07-16T12:21:29,619 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,619 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,619 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,619 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,620 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,620 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,622 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,623 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,623 | ^ 2021-07-16T12:21:29,623 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,623 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,623 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,623 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:29,623 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:29,623 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,626 pastis/externals/iced/io/fastio_.c:6112:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,626 6112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,626 | ^ 2021-07-16T12:21:29,626 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,627 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,627 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,627 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,627 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,627 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,631 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,631 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,631 | ^ 2021-07-16T12:21:29,631 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,631 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,632 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,632 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,632 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,632 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,634 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,635 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,635 | ^ 2021-07-16T12:21:29,635 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,635 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,635 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,635 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:29,635 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:29,635 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,638 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,638 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,638 | ^ 2021-07-16T12:21:29,638 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,639 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,639 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,639 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,639 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,639 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,642 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,642 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,642 | ^ 2021-07-16T12:21:29,642 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,642 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,642 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,642 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,643 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,643 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,645 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,646 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,646 | ^ 2021-07-16T12:21:29,646 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,646 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,646 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,646 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:29,646 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:29,646 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:29,649 pastis/externals/iced/io/fastio_.c:6128:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:29,649 6128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:29,649 | ^ 2021-07-16T12:21:29,649 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:29,650 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:29,650 from pastis/externals/iced/io/fastio_.c:4: 2021-07-16T12:21:29,650 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:29,650 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:29,650 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:32,891 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pastis/externals/iced/io/fastio_.o -lm -o build/lib.linux-armv7l-3.9/pastis/externals/iced/io/fastio_.cpython-39-arm-linux-gnueabihf.so 2021-07-16T12:21:33,033 building 'pastis.externals.iced.io.read' extension 2021-07-16T12:21:33,034 compiling C sources 2021-07-16T12:21:33,034 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:33,034 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-16T12:21:33,035 arm-linux-gnueabihf-gcc: pastis/externals/iced/io/read.c 2021-07-16T12:21:33,224 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pastis/externals/iced/io/read.o -lm -o build/lib.linux-armv7l-3.9/pastis/externals/iced/io/read.cpython-39-arm-linux-gnueabihf.so 2021-07-16T12:21:33,333 building 'pastis.externals.iced.normalization/_normalization_' extension 2021-07-16T12:21:33,333 compiling C sources 2021-07-16T12:21:33,333 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:33,334 creating build/temp.linux-armv7l-3.9/pastis/externals/iced/normalization 2021-07-16T12:21:33,334 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-16T12:21:33,335 arm-linux-gnueabihf-gcc: pastis/externals/iced/normalization/_normalization_.c 2021-07-16T12:21:33,734 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T12:21:33,735 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T12:21:33,735 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T12:21:33,735 from pastis/externals/iced/normalization/_normalization_.c:613: 2021-07-16T12:21:33,735 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T12:21:33,735 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T12:21:33,736 | ^~~~~~~ 2021-07-16T12:21:33,791 pastis/externals/iced/normalization/_normalization_.c: In function ‘__pyx_pf_6pastis_9externals_4iced_13normalization_15_normalization___update_normalization_csr’: 2021-07-16T12:21:33,792 pastis/externals/iced/normalization/_normalization_.c:2044:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-16T12:21:33,792 2044 | __pyx_t_11 = ((__pyx_v_i >= (*__Pyx_BufPtrStrided1d(int *, __pyx_pybuffernd_X_indptr.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_X_indptr.diminfo[0].strides))) != 0); 2021-07-16T12:21:33,792 | ^~ 2021-07-16T12:21:33,842 pastis/externals/iced/normalization/_normalization_.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-16T12:21:33,845 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,845 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,845 | ^ 2021-07-16T12:21:33,845 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,845 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,845 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,846 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,846 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,846 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,848 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,848 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,848 | ^ 2021-07-16T12:21:33,849 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,849 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,849 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,849 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:33,849 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:33,849 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,851 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,851 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,852 | ^ 2021-07-16T12:21:33,852 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,852 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,852 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,852 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,852 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,852 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,854 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,854 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,855 | ^ 2021-07-16T12:21:33,855 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,855 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,855 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,855 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,855 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,855 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,857 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,857 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,858 | ^ 2021-07-16T12:21:33,858 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,858 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,858 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,858 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:33,858 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:33,858 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,860 pastis/externals/iced/normalization/_normalization_.c:5235:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,860 5235 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,861 | ^ 2021-07-16T12:21:33,861 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,861 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,861 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,861 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,861 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,861 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,864 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,865 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,865 | ^ 2021-07-16T12:21:33,865 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,865 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,865 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,865 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,865 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,865 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,867 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,867 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,868 | ^ 2021-07-16T12:21:33,868 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,868 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,868 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,868 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:33,868 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:33,868 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,870 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,870 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,871 | ^ 2021-07-16T12:21:33,871 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,871 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,871 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,871 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,871 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,873 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,873 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,874 | ^ 2021-07-16T12:21:33,874 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,874 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,874 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,874 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,874 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,874 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,876 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,876 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,877 | ^ 2021-07-16T12:21:33,877 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,877 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,877 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,877 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:33,877 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:33,877 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:33,879 pastis/externals/iced/normalization/_normalization_.c:5251:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:33,880 5251 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:33,880 | ^ 2021-07-16T12:21:33,880 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:33,880 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:33,880 from pastis/externals/iced/normalization/_normalization_.c:4: 2021-07-16T12:21:33,880 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:33,880 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:33,880 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:35,969 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pastis/externals/iced/normalization/_normalization_.o -lm -o build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization/_normalization_.cpython-39-arm-linux-gnueabihf.so 2021-07-16T12:21:36,094 building 'pastis.externals.iced._filter_' extension 2021-07-16T12:21:36,094 compiling C sources 2021-07-16T12:21:36,095 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-16T12:21:36,095 compile options: '-I../src/cblas -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2021-07-16T12:21:36,095 arm-linux-gnueabihf-gcc: pastis/externals/iced/_filter_.c 2021-07-16T12:21:36,492 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-16T12:21:36,492 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-16T12:21:36,492 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-16T12:21:36,493 from pastis/externals/iced/_filter_.c:613: 2021-07-16T12:21:36,493 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-16T12:21:36,493 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-16T12:21:36,493 | ^~~~~~~ 2021-07-16T12:21:36,546 pastis/externals/iced/_filter_.c: In function ‘__pyx_pf_6pastis_9externals_4iced_8_filter___filter_csr’: 2021-07-16T12:21:36,547 pastis/externals/iced/_filter_.c:2046:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-16T12:21:36,547 2046 | __pyx_t_11 = ((__pyx_v_i >= (*__Pyx_BufPtrStrided1d(int *, __pyx_pybuffernd_X_indptr.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_X_indptr.diminfo[0].strides))) != 0); 2021-07-16T12:21:36,547 | ^~ 2021-07-16T12:21:36,598 pastis/externals/iced/_filter_.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-16T12:21:36,601 pastis/externals/iced/_filter_.c:5264:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,601 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,601 | ^ 2021-07-16T12:21:36,602 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,602 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,602 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,602 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,602 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,602 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,605 pastis/externals/iced/_filter_.c:5264:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,605 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,605 | ^ 2021-07-16T12:21:36,605 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,605 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,605 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,605 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:36,605 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:36,606 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,608 pastis/externals/iced/_filter_.c:5264:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,608 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,608 | ^ 2021-07-16T12:21:36,608 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,608 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,608 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,608 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,608 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,609 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,611 pastis/externals/iced/_filter_.c:5264:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,611 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,611 | ^ 2021-07-16T12:21:36,611 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,611 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,611 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,611 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,611 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,612 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,614 pastis/externals/iced/_filter_.c:5264:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,614 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,614 | ^ 2021-07-16T12:21:36,614 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,614 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,615 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,615 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:36,615 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:36,615 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,617 pastis/externals/iced/_filter_.c:5264:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,617 5264 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,617 | ^ 2021-07-16T12:21:36,617 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,617 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,618 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,618 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,618 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,618 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,621 pastis/externals/iced/_filter_.c:5280:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,621 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,621 | ^ 2021-07-16T12:21:36,621 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,621 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,622 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,622 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,622 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,622 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,624 pastis/externals/iced/_filter_.c:5280:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,624 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,624 | ^ 2021-07-16T12:21:36,624 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,624 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,624 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,625 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:36,625 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:36,625 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,627 pastis/externals/iced/_filter_.c:5280:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,627 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,627 | ^ 2021-07-16T12:21:36,627 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,627 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,628 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,628 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,628 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,628 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,630 pastis/externals/iced/_filter_.c:5280:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,630 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,630 | ^ 2021-07-16T12:21:36,630 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,630 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,631 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,631 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,631 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,631 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,633 pastis/externals/iced/_filter_.c:5280:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,633 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,633 | ^ 2021-07-16T12:21:36,633 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,633 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,634 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,634 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-16T12:21:36,634 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-16T12:21:36,634 | ^~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:36,636 pastis/externals/iced/_filter_.c:5280:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-16T12:21:36,636 5280 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-16T12:21:36,636 | ^ 2021-07-16T12:21:36,636 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-16T12:21:36,636 from /usr/include/python3.9/Python.h:97, 2021-07-16T12:21:36,637 from pastis/externals/iced/_filter_.c:4: 2021-07-16T12:21:36,637 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-16T12:21:36,637 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-16T12:21:36,637 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-16T12:21:38,728 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/pastis/externals/iced/_filter_.o -lm -o build/lib.linux-armv7l-3.9/pastis/externals/iced/_filter_.cpython-39-arm-linux-gnueabihf.so 2021-07-16T12:21:38,857 running build_scripts 2021-07-16T12:21:38,858 creating build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,859 copying and adjusting pastis/script/pastis-mds -> build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,861 copying and adjusting pastis/script/pastis-nmds -> build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,863 copying and adjusting pastis/script/pastis-pm1 -> build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,864 copying and adjusting pastis/script/pastis-pm2 -> build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,866 copying and adjusting pastis/script/pastis-poisson -> build/scripts.linux-armv7l-3.9 2021-07-16T12:21:38,868 changing mode of build/scripts.linux-armv7l-3.9/pastis-mds from 644 to 755 2021-07-16T12:21:38,868 changing mode of build/scripts.linux-armv7l-3.9/pastis-nmds from 644 to 755 2021-07-16T12:21:38,869 changing mode of build/scripts.linux-armv7l-3.9/pastis-pm1 from 644 to 755 2021-07-16T12:21:38,869 changing mode of build/scripts.linux-armv7l-3.9/pastis-pm2 from 644 to 755 2021-07-16T12:21:38,869 changing mode of build/scripts.linux-armv7l-3.9/pastis-poisson from 644 to 755 2021-07-16T12:21:38,873 installing to build/bdist.linux-armv7l/wheel 2021-07-16T12:21:38,874 running install 2021-07-16T12:21:38,874 running install_lib 2021-07-16T12:21:38,880 creating build/bdist.linux-armv7l 2021-07-16T12:21:38,881 creating build/bdist.linux-armv7l/wheel 2021-07-16T12:21:38,883 creating build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:38,884 copying build/lib.linux-armv7l-3.9/pastis/algorithms.py -> build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:38,888 creating build/bdist.linux-armv7l/wheel/pastis/externals 2021-07-16T12:21:38,890 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced 2021-07-16T12:21:38,891 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2021-07-16T12:21:38,893 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2021-07-16T12:21:38,895 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2021-07-16T12:21:38,897 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets/base.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2021-07-16T12:21:38,899 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/datasets/dldata.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets 2021-07-16T12:21:38,902 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/filter.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2021-07-16T12:21:38,904 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2021-07-16T12:21:38,907 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/_filter_.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2021-07-16T12:21:38,914 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,915 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/_io_pandas.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,918 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,921 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/fastio_.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,930 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,932 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/_io_else.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,934 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/io/read.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io 2021-07-16T12:21:38,937 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced 2021-07-16T12:21:38,940 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,941 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/utils/_vis.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,943 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/utils/_validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,945 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,947 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/utils/_genome.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,950 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils 2021-07-16T12:21:38,953 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization 2021-07-16T12:21:38,954 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization/_normalization_.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization 2021-07-16T12:21:38,960 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization 2021-07-16T12:21:38,962 copying build/lib.linux-armv7l-3.9/pastis/externals/iced/normalization/_ca_utils.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization 2021-07-16T12:21:38,966 copying build/lib.linux-armv7l-3.9/pastis/externals/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2021-07-16T12:21:38,968 copying build/lib.linux-armv7l-3.9/pastis/externals/test_externals_setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2021-07-16T12:21:38,970 copying build/lib.linux-armv7l-3.9/pastis/externals/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals 2021-07-16T12:21:38,973 creating build/bdist.linux-armv7l/wheel/pastis/datasets 2021-07-16T12:21:38,974 copying build/lib.linux-armv7l-3.9/pastis/datasets/_generated_datasets.py -> build/bdist.linux-armv7l/wheel/pastis/datasets 2021-07-16T12:21:38,976 copying build/lib.linux-armv7l-3.9/pastis/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/datasets 2021-07-16T12:21:38,978 copying build/lib.linux-armv7l-3.9/pastis/config.py -> build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:38,980 copying build/lib.linux-armv7l-3.9/pastis/setup.py -> build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:38,983 copying build/lib.linux-armv7l-3.9/pastis/fastio.py -> build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:38,986 creating build/bdist.linux-armv7l/wheel/pastis/io 2021-07-16T12:21:38,988 creating build/bdist.linux-armv7l/wheel/pastis/io/read 2021-07-16T12:21:38,989 copying build/lib.linux-armv7l-3.9/pastis/io/read/all_data.py -> build/bdist.linux-armv7l/wheel/pastis/io/read 2021-07-16T12:21:38,992 copying build/lib.linux-armv7l-3.9/pastis/io/read/hiclib.py -> build/bdist.linux-armv7l/wheel/pastis/io/read 2021-07-16T12:21:38,994 copying build/lib.linux-armv7l-3.9/pastis/io/read/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io/read 2021-07-16T12:21:38,996 copying build/lib.linux-armv7l-3.9/pastis/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/io 2021-07-16T12:21:38,999 creating build/bdist.linux-armv7l/wheel/pastis/io/write_struct 2021-07-16T12:21:39,000 copying build/lib.linux-armv7l-3.9/pastis/io/write_struct/pdb.py -> build/bdist.linux-armv7l/wheel/pastis/io/write_struct 2021-07-16T12:21:39,003 copying build/lib.linux-armv7l-3.9/pastis/io/write_struct/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io/write_struct 2021-07-16T12:21:39,004 copying build/lib.linux-armv7l-3.9/pastis/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io 2021-07-16T12:21:39,007 copying build/lib.linux-armv7l-3.9/pastis/__init__.py -> build/bdist.linux-armv7l/wheel/pastis 2021-07-16T12:21:39,010 creating build/bdist.linux-armv7l/wheel/pastis/utils 2021-07-16T12:21:39,011 copying build/lib.linux-armv7l-3.9/pastis/utils/bezier.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2021-07-16T12:21:39,013 copying build/lib.linux-armv7l-3.9/pastis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2021-07-16T12:21:39,015 copying build/lib.linux-armv7l-3.9/pastis/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/utils 2021-07-16T12:21:39,019 creating build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,020 copying build/lib.linux-armv7l-3.9/pastis/optimization/constraints.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,024 copying build/lib.linux-armv7l-3.9/pastis/optimization/estimate_alpha_beta.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,027 copying build/lib.linux-armv7l-3.9/pastis/optimization/pastis_algorithms.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,031 copying build/lib.linux-armv7l-3.9/pastis/optimization/utils.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,033 copying build/lib.linux-armv7l-3.9/pastis/optimization/poisson_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,036 copying build/lib.linux-armv7l-3.9/pastis/optimization/piecewise_whole_genome.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,039 copying build/lib.linux-armv7l-3.9/pastis/optimization/initialization.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,042 copying build/lib.linux-armv7l-3.9/pastis/optimization/negative_binomial_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,045 copying build/lib.linux-armv7l-3.9/pastis/optimization/mds.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,048 copying build/lib.linux-armv7l-3.9/pastis/optimization/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,050 copying build/lib.linux-armv7l-3.9/pastis/optimization/utils_poisson.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,053 copying build/lib.linux-armv7l-3.9/pastis/optimization/negative_binomial.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,056 copying build/lib.linux-armv7l-3.9/pastis/optimization/callbacks.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,059 copying build/lib.linux-armv7l-3.9/pastis/optimization/poisson.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,063 copying build/lib.linux-armv7l-3.9/pastis/optimization/counts.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,066 copying build/lib.linux-armv7l-3.9/pastis/optimization/poisson_model.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,069 copying build/lib.linux-armv7l-3.9/pastis/optimization/mds_old.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,072 copying build/lib.linux-armv7l-3.9/pastis/optimization/multiscale_optimization.py -> build/bdist.linux-armv7l/wheel/pastis/optimization 2021-07-16T12:21:39,075 running install_data 2021-07-16T12:21:39,076 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data 2021-07-16T12:21:39,077 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2021-07-16T12:21:39,078 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2021-07-16T12:21:39,082 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2021-07-16T12:21:39,085 copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009 2021-07-16T12:21:39,110 creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:39,111 copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:39,117 copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_xgi.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:39,124 copying pastis/externals/iced/datasets/data/servant2018/simulation_3.mat -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:39,345 copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.mat -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:41,014 copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_seg.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:41,020 copying pastis/externals/iced/datasets/data/servant2018/simulation_3.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018 2021-07-16T12:21:41,023 running install_clib 2021-07-16T12:21:41,023 customize UnixCCompiler 2021-07-16T12:21:41,024 running install_egg_info 2021-07-16T12:21:41,028 running egg_info 2021-07-16T12:21:41,029 creating pastis.egg-info 2021-07-16T12:21:41,030 writing pastis.egg-info/PKG-INFO 2021-07-16T12:21:41,034 writing dependency_links to pastis.egg-info/dependency_links.txt 2021-07-16T12:21:41,037 writing requirements to pastis.egg-info/requires.txt 2021-07-16T12:21:41,038 writing top-level names to pastis.egg-info/top_level.txt 2021-07-16T12:21:41,040 writing manifest file 'pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:41,100 reading manifest file 'pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:41,108 writing manifest file 'pastis.egg-info/SOURCES.txt' 2021-07-16T12:21:41,110 Copying pastis.egg-info to build/bdist.linux-armv7l/wheel/pastis-0.4.0-py3.9.egg-info 2021-07-16T12:21:41,126 running install_scripts 2021-07-16T12:21:41,128 creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.data 2021-07-16T12:21:41,128 creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,129 copying build/scripts.linux-armv7l-3.9/pastis-poisson -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,132 copying build/scripts.linux-armv7l-3.9/pastis-pm2 -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,135 copying build/scripts.linux-armv7l-3.9/pastis-mds -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,137 copying build/scripts.linux-armv7l-3.9/pastis-nmds -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,140 copying build/scripts.linux-armv7l-3.9/pastis-pm1 -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts 2021-07-16T12:21:41,142 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-poisson to 755 2021-07-16T12:21:41,142 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-pm2 to 755 2021-07-16T12:21:41,143 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-mds to 755 2021-07-16T12:21:41,143 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-nmds to 755 2021-07-16T12:21:41,143 changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-pm1 to 755 2021-07-16T12:21:41,172 creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.dist-info/WHEEL 2021-07-16T12:21:41,176 creating '/tmp/pip-wheel-342n2smb/pastis-0.4.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T12:21:41,179 adding 'pastis/__init__.py' 2021-07-16T12:21:41,181 adding 'pastis/algorithms.py' 2021-07-16T12:21:41,183 adding 'pastis/config.py' 2021-07-16T12:21:41,185 adding 'pastis/fastio.py' 2021-07-16T12:21:41,186 adding 'pastis/setup.py' 2021-07-16T12:21:41,188 adding 'pastis/datasets/__init__.py' 2021-07-16T12:21:41,190 adding 'pastis/datasets/_generated_datasets.py' 2021-07-16T12:21:41,192 adding 'pastis/externals/__init__.py' 2021-07-16T12:21:41,194 adding 'pastis/externals/setup.py' 2021-07-16T12:21:41,195 adding 'pastis/externals/test_externals_setup.py' 2021-07-16T12:21:41,197 adding 'pastis/externals/iced/__init__.py' 2021-07-16T12:21:41,230 adding 'pastis/externals/iced/_filter_.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T12:21:41,232 adding 'pastis/externals/iced/filter.py' 2021-07-16T12:21:41,234 adding 'pastis/externals/iced/setup.py' 2021-07-16T12:21:41,235 adding 'pastis/externals/iced/datasets/__init__.py' 2021-07-16T12:21:41,236 adding 'pastis/externals/iced/datasets/base.py' 2021-07-16T12:21:41,238 adding 'pastis/externals/iced/datasets/dldata.py' 2021-07-16T12:21:41,239 adding 'pastis/externals/iced/datasets/setup.py' 2021-07-16T12:21:41,242 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed' 2021-07-16T12:21:41,244 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv' 2021-07-16T12:21:41,414 adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix' 2021-07-16T12:21:41,434 adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.bed' 2021-07-16T12:22:00,782 adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.mat' 2021-07-16T12:22:01,681 adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_seg.bed' 2021-07-16T12:22:01,704 adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_xgi.bed' 2021-07-16T12:22:01,711 adding 'pastis/externals/iced/datasets/data/servant2018/simulation_3.bed' 2021-07-16T12:22:03,199 adding 'pastis/externals/iced/datasets/data/servant2018/simulation_3.mat' 2021-07-16T12:22:03,296 adding 'pastis/externals/iced/io/__init__.py' 2021-07-16T12:22:03,298 adding 'pastis/externals/iced/io/_io_else.py' 2021-07-16T12:22:03,300 adding 'pastis/externals/iced/io/_io_pandas.py' 2021-07-16T12:22:03,347 adding 'pastis/externals/iced/io/fastio_.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T12:22:03,352 adding 'pastis/externals/iced/io/read.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T12:22:03,353 adding 'pastis/externals/iced/io/setup.py' 2021-07-16T12:22:03,356 adding 'pastis/externals/iced/normalization/__init__.py' 2021-07-16T12:22:03,359 adding 'pastis/externals/iced/normalization/_ca_utils.py' 2021-07-16T12:22:03,388 adding 'pastis/externals/iced/normalization/_normalization_.cpython-39-arm-linux-gnueabihf.so' 2021-07-16T12:22:03,392 adding 'pastis/externals/iced/utils/__init__.py' 2021-07-16T12:22:03,394 adding 'pastis/externals/iced/utils/_genome.py' 2021-07-16T12:22:03,396 adding 'pastis/externals/iced/utils/_validation.py' 2021-07-16T12:22:03,397 adding 'pastis/externals/iced/utils/_vis.py' 2021-07-16T12:22:03,399 adding 'pastis/externals/iced/utils/validation.py' 2021-07-16T12:22:03,401 adding 'pastis/io/__init__.py' 2021-07-16T12:22:03,403 adding 'pastis/io/setup.py' 2021-07-16T12:22:03,405 adding 'pastis/io/read/__init__.py' 2021-07-16T12:22:03,407 adding 'pastis/io/read/all_data.py' 2021-07-16T12:22:03,409 adding 'pastis/io/read/hiclib.py' 2021-07-16T12:22:03,411 adding 'pastis/io/write_struct/__init__.py' 2021-07-16T12:22:03,413 adding 'pastis/io/write_struct/pdb.py' 2021-07-16T12:22:03,415 adding 'pastis/optimization/__init__.py' 2021-07-16T12:22:03,418 adding 'pastis/optimization/callbacks.py' 2021-07-16T12:22:03,421 adding 'pastis/optimization/constraints.py' 2021-07-16T12:22:03,426 adding 'pastis/optimization/counts.py' 2021-07-16T12:22:03,429 adding 'pastis/optimization/estimate_alpha_beta.py' 2021-07-16T12:22:03,437 adding 'pastis/optimization/initialization.py' 2021-07-16T12:22:03,439 adding 'pastis/optimization/mds.py' 2021-07-16T12:22:03,441 adding 'pastis/optimization/mds_old.py' 2021-07-16T12:22:03,444 adding 'pastis/optimization/multiscale_optimization.py' 2021-07-16T12:22:03,446 adding 'pastis/optimization/negative_binomial.py' 2021-07-16T12:22:03,448 adding 'pastis/optimization/negative_binomial_structure.py' 2021-07-16T12:22:03,452 adding 'pastis/optimization/pastis_algorithms.py' 2021-07-16T12:22:03,457 adding 'pastis/optimization/piecewise_whole_genome.py' 2021-07-16T12:22:03,460 adding 'pastis/optimization/poisson.py' 2021-07-16T12:22:03,463 adding 'pastis/optimization/poisson_model.py' 2021-07-16T12:22:03,465 adding 'pastis/optimization/poisson_structure.py' 2021-07-16T12:22:03,467 adding 'pastis/optimization/utils.py' 2021-07-16T12:22:03,469 adding 'pastis/optimization/utils_poisson.py' 2021-07-16T12:22:03,471 adding 'pastis/utils/__init__.py' 2021-07-16T12:22:03,472 adding 'pastis/utils/bezier.py' 2021-07-16T12:22:03,473 adding 'pastis/utils/validation.py' 2021-07-16T12:22:03,476 adding 'pastis-0.4.0.data/scripts/pastis-mds' 2021-07-16T12:22:03,477 adding 'pastis-0.4.0.data/scripts/pastis-nmds' 2021-07-16T12:22:03,478 adding 'pastis-0.4.0.data/scripts/pastis-pm1' 2021-07-16T12:22:03,480 adding 'pastis-0.4.0.data/scripts/pastis-pm2' 2021-07-16T12:22:03,481 adding 'pastis-0.4.0.data/scripts/pastis-poisson' 2021-07-16T12:22:03,483 adding 'pastis-0.4.0.dist-info/METADATA' 2021-07-16T12:22:03,484 adding 'pastis-0.4.0.dist-info/WHEEL' 2021-07-16T12:22:03,486 adding 'pastis-0.4.0.dist-info/top_level.txt' 2021-07-16T12:22:03,487 adding 'pastis-0.4.0.dist-info/RECORD' 2021-07-16T12:22:03,846 removing build/bdist.linux-armv7l/wheel 2021-07-16T12:22:03,948 ########### EXT COMPILER OPTIMIZATION ########### 2021-07-16T12:22:03,948 Platform : 2021-07-16T12:22:03,948 Architecture: armhf 2021-07-16T12:22:03,948 Compiler : gcc 2021-07-16T12:22:03,949 CPU baseline : 2021-07-16T12:22:03,949 Requested : 'min' 2021-07-16T12:22:03,949 Enabled : none 2021-07-16T12:22:03,950 Flags : none 2021-07-16T12:22:03,950 Extra checks: none 2021-07-16T12:22:03,950 CPU dispatch : 2021-07-16T12:22:03,950 Requested : 'max -xop -fma4' 2021-07-16T12:22:03,951 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2021-07-16T12:22:03,951 Generated : none 2021-07-16T12:22:03,951 CCompilerOpt.cache_flush[804] : write cache to path -> /tmp/pip-wheel-w44guw9f/pastis_a8f790ca59c74a4e950e7da5d02cf4c6/build/temp.linux-armv7l-3.9/ccompiler_opt_cache_ext.py 2021-07-16T12:22:04,111 Building wheel for pastis (setup.py): finished with status 'done' 2021-07-16T12:22:04,472 Created wheel for pastis: filename=pastis-0.4.0-cp39-cp39-linux_armv7l.whl size=28851535 sha256=2ed93a3b7e17b2523199e242cbc5209855b462ee20de062ecfc4f8e94186318c 2021-07-16T12:22:04,473 Stored in directory: /tmp/pip-ephem-wheel-cache-26j6bld3/wheels/45/03/54/b53f7eb595fc58a200bbb64be2723720984e1323c182b73aba 2021-07-16T12:22:04,498 Successfully built pastis 2021-07-16T12:22:05,466 Removed build tracker: '/tmp/pip-req-tracker-vl74ngxu'