2021-07-16T14:15:45,161 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-07-16T14:15:45,871 Created temporary directory: /tmp/pip-ephem-wheel-cache-xex4a_kn
2021-07-16T14:15:45,876 Created temporary directory: /tmp/pip-req-tracker-d0_5s99e
2021-07-16T14:15:45,877 Initialized build tracking at /tmp/pip-req-tracker-d0_5s99e
2021-07-16T14:15:45,878 Created build tracker: /tmp/pip-req-tracker-d0_5s99e
2021-07-16T14:15:45,878 Entered build tracker: /tmp/pip-req-tracker-d0_5s99e
2021-07-16T14:15:45,879 Created temporary directory: /tmp/pip-wheel-6cbtsste
2021-07-16T14:15:45,942 1 location(s) to search for versions of snipgenie:
2021-07-16T14:15:45,942 * https://pypi.org/simple/snipgenie/
2021-07-16T14:15:45,943 Fetching project page and analyzing links: https://pypi.org/simple/snipgenie/
2021-07-16T14:15:45,945 Getting page https://pypi.org/simple/snipgenie/
2021-07-16T14:15:45,950 Found index url https://pypi.org/simple
2021-07-16T14:15:46,269   Found link https://files.pythonhosted.org/packages/79/4a/96b0139ad8dbb883dd21a254ca6db4ebe82b50d49687ff2845e03e9d1b07/snipgenie-0.4.0.tar.gz#sha256=042cafc1d792e720fa40ff1beac4f9e0569aa4de4e804b21761b6adf95844162 (from https://pypi.org/simple/snipgenie/), version: 0.4.0
2021-07-16T14:15:46,300 Given no hashes to check 1 links for project 'snipgenie': discarding no candidates
2021-07-16T14:15:46,334 Collecting snipgenie==0.4.0
2021-07-16T14:15:46,337   Created temporary directory: /tmp/pip-unpack-gxuiux76
2021-07-16T14:15:50,480   Downloading snipgenie-0.4.0.tar.gz (25.0 MB)
2021-07-16T14:16:09,608   Added snipgenie==0.4.0 from https://files.pythonhosted.org/packages/79/4a/96b0139ad8dbb883dd21a254ca6db4ebe82b50d49687ff2845e03e9d1b07/snipgenie-0.4.0.tar.gz#sha256=042cafc1d792e720fa40ff1beac4f9e0569aa4de4e804b21761b6adf95844162 to build tracker '/tmp/pip-req-tracker-d0_5s99e'
2021-07-16T14:16:09,612     Running setup.py (path:/tmp/pip-wheel-6cbtsste/snipgenie_02cd8689148f42c4ad8a9156b8d5eaf2/setup.py) egg_info for package snipgenie
2021-07-16T14:16:09,615     Created temporary directory: /tmp/pip-pip-egg-info-b6g3i47e
2021-07-16T14:16:09,616     Running command python setup.py egg_info
2021-07-16T14:16:12,025     running egg_info
2021-07-16T14:16:12,030     creating /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info
2021-07-16T14:16:12,034     writing requirements to /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/requires.txt
2021-07-16T14:16:12,037     writing entry points to /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/entry_points.txt
2021-07-16T14:16:12,039     writing dependency_links to /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/dependency_links.txt
2021-07-16T14:16:12,041     writing /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/PKG-INFO
2021-07-16T14:16:12,045     writing top-level names to /tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/top_level.txt
2021-07-16T14:16:12,049     writing manifest file '/tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/SOURCES.txt'
2021-07-16T14:16:12,421     reading manifest file '/tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/SOURCES.txt'
2021-07-16T14:16:12,432     writing manifest file '/tmp/pip-pip-egg-info-b6g3i47e/snipgenie.egg-info/SOURCES.txt'
2021-07-16T14:16:12,569   Source in /tmp/pip-wheel-6cbtsste/snipgenie_02cd8689148f42c4ad8a9156b8d5eaf2 has version 0.4.0, which satisfies requirement snipgenie==0.4.0 from https://files.pythonhosted.org/packages/79/4a/96b0139ad8dbb883dd21a254ca6db4ebe82b50d49687ff2845e03e9d1b07/snipgenie-0.4.0.tar.gz#sha256=042cafc1d792e720fa40ff1beac4f9e0569aa4de4e804b21761b6adf95844162
2021-07-16T14:16:12,571   Removed snipgenie==0.4.0 from https://files.pythonhosted.org/packages/79/4a/96b0139ad8dbb883dd21a254ca6db4ebe82b50d49687ff2845e03e9d1b07/snipgenie-0.4.0.tar.gz#sha256=042cafc1d792e720fa40ff1beac4f9e0569aa4de4e804b21761b6adf95844162 from build tracker '/tmp/pip-req-tracker-d0_5s99e'
2021-07-16T14:16:12,580 Created temporary directory: /tmp/pip-unpack-6vc4u_px
2021-07-16T14:16:12,582 Building wheels for collected packages: snipgenie
2021-07-16T14:16:12,589   Created temporary directory: /tmp/pip-wheel-ox_xpjse
2021-07-16T14:16:12,590   Building wheel for snipgenie (setup.py): started
2021-07-16T14:16:12,591   Destination directory: /tmp/pip-wheel-ox_xpjse
2021-07-16T14:16:12,592   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6cbtsste/snipgenie_02cd8689148f42c4ad8a9156b8d5eaf2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6cbtsste/snipgenie_02cd8689148f42c4ad8a9156b8d5eaf2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ox_xpjse
2021-07-16T14:16:14,965   running bdist_wheel
2021-07-16T14:16:14,982   running build
2021-07-16T14:16:14,983   running build_py
2021-07-16T14:16:15,319   creating build
2021-07-16T14:16:15,320   creating build/lib
2021-07-16T14:16:15,322   creating build/lib/snipgenie
2021-07-16T14:16:15,324   copying snipgenie/widgets.py -> build/lib/snipgenie
2021-07-16T14:16:15,332   copying snipgenie/trees.py -> build/lib/snipgenie
2021-07-16T14:16:15,336   copying snipgenie/rdiff.py -> build/lib/snipgenie
2021-07-16T14:16:15,342   copying snipgenie/phylo.py -> build/lib/snipgenie
2021-07-16T14:16:15,349   copying snipgenie/qt.py -> build/lib/snipgenie
2021-07-16T14:16:15,354   copying snipgenie/plotting.py -> build/lib/snipgenie
2021-07-16T14:16:15,360   copying snipgenie/gis.py -> build/lib/snipgenie
2021-07-16T14:16:15,368   copying snipgenie/tools.py -> build/lib/snipgenie
2021-07-16T14:16:15,376   copying snipgenie/__init__.py -> build/lib/snipgenie
2021-07-16T14:16:15,381   copying snipgenie/snp_typing.py -> build/lib/snipgenie
2021-07-16T14:16:15,387   copying snipgenie/gui.py -> build/lib/snipgenie
2021-07-16T14:16:15,398   copying snipgenie/db.py -> build/lib/snipgenie
2021-07-16T14:16:15,405   copying snipgenie/tables.py -> build/lib/snipgenie
2021-07-16T14:16:15,412   copying snipgenie/app.py -> build/lib/snipgenie
2021-07-16T14:16:15,421   copying snipgenie/pybam.py -> build/lib/snipgenie
2021-07-16T14:16:15,432   copying snipgenie/aligners.py -> build/lib/snipgenie
2021-07-16T14:16:15,439   copying snipgenie/tests.py -> build/lib/snipgenie
2021-07-16T14:16:15,460   creating build/lib/snipgenie/data
2021-07-16T14:16:15,462   copying snipgenie/data/MTB-H37Rv.fa.fai -> build/lib/snipgenie/data
2021-07-16T14:16:15,467   copying snipgenie/data/RD_rules.csv -> build/lib/snipgenie/data
2021-07-16T14:16:15,471   copying snipgenie/data/MAP-K10.gb -> build/lib/snipgenie/data
2021-07-16T14:16:16,452   copying snipgenie/data/MTB-H37Rv.gb -> build/lib/snipgenie/data
2021-07-16T14:16:17,728   copying snipgenie/data/Mbovis_AF212297.gff -> build/lib/snipgenie/data
2021-07-16T14:16:18,346   copying snipgenie/data/Mbovis_AF212297.gb.gff -> build/lib/snipgenie/data
2021-07-16T14:16:18,560   copying snipgenie/data/Mbovis_AF212297_mask.bed -> build/lib/snipgenie/data
2021-07-16T14:16:18,566   copying snipgenie/data/Msmeg-MC2.fa -> build/lib/snipgenie/data
2021-07-16T14:16:19,225   copying snipgenie/data/Mbovis_AF212297.fa.fai -> build/lib/snipgenie/data
2021-07-16T14:16:19,230   copying snipgenie/data/RD.csv -> build/lib/snipgenie/data
2021-07-16T14:16:19,236   copying snipgenie/data/Msmeg-MC2.gb -> build/lib/snipgenie/data
2021-07-16T14:16:20,795   copying snipgenie/data/dr_spacers.fa -> build/lib/snipgenie/data
2021-07-16T14:16:20,799   copying snipgenie/data/MTB-H37Rv.fa -> build/lib/snipgenie/data
2021-07-16T14:16:21,214   copying snipgenie/data/Mbovis_csq_format.gff -> build/lib/snipgenie/data
2021-07-16T14:16:21,442   copying snipgenie/data/MAP-K10.fa -> build/lib/snipgenie/data
2021-07-16T14:16:21,908   copying snipgenie/data/Mbovis_AF212297_proteins.fa -> build/lib/snipgenie/data
2021-07-16T14:16:22,071   copying snipgenie/data/Mbovis_AF212297.gb -> build/lib/snipgenie/data
2021-07-16T14:16:23,459   copying snipgenie/data/ireland_clusters.txt -> build/lib/snipgenie/data
2021-07-16T14:16:23,464   copying snipgenie/data/ireland_metadata.csv -> build/lib/snipgenie/data
2021-07-16T14:16:23,474   copying snipgenie/data/Msmeg-MC2.gb.gff -> build/lib/snipgenie/data
2021-07-16T14:16:23,822   copying snipgenie/data/dr_spacers_blast.txt -> build/lib/snipgenie/data
2021-07-16T14:16:23,835   copying snipgenie/data/Mbovis_AF212297.fa -> build/lib/snipgenie/data
2021-07-16T14:16:24,254   copying snipgenie/data/ireland_clade_snps.csv -> build/lib/snipgenie/data
2021-07-16T14:16:24,261   copying snipgenie/data/Mbovis.org_db.csv -> build/lib/snipgenie/data
2021-07-16T14:16:24,284   copying snipgenie/data/nuc_snps_ireland.txt -> build/lib/snipgenie/data
2021-07-16T14:16:24,377   copying snipgenie/logo.png -> build/lib/snipgenie
2021-07-16T14:16:24,385   copying snipgenie/description.txt -> build/lib/snipgenie
2021-07-16T14:16:24,399   installing to build/bdist.linux-armv7l/wheel
2021-07-16T14:16:24,399   running install
2021-07-16T14:16:24,401   running install_lib
2021-07-16T14:16:24,409   creating build/bdist.linux-armv7l
2021-07-16T14:16:24,410   creating build/bdist.linux-armv7l/wheel
2021-07-16T14:16:24,414   creating build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,416   copying build/lib/snipgenie/logo.png -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,422   copying build/lib/snipgenie/widgets.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,430   copying build/lib/snipgenie/trees.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,434   copying build/lib/snipgenie/rdiff.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,439   copying build/lib/snipgenie/phylo.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,445   copying build/lib/snipgenie/qt.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,451   copying build/lib/snipgenie/plotting.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,457   copying build/lib/snipgenie/gis.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,465   copying build/lib/snipgenie/tools.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,472   copying build/lib/snipgenie/__init__.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,476   copying build/lib/snipgenie/snp_typing.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,480   copying build/lib/snipgenie/gui.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:24,491   creating build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:24,493   copying build/lib/snipgenie/data/MTB-H37Rv.fa.fai -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:24,497   copying build/lib/snipgenie/data/RD_rules.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:24,501   copying build/lib/snipgenie/data/MAP-K10.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:25,481   copying build/lib/snipgenie/data/MTB-H37Rv.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:26,774   copying build/lib/snipgenie/data/Mbovis_AF212297.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:27,391   copying build/lib/snipgenie/data/Mbovis_AF212297.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:27,612   copying build/lib/snipgenie/data/Mbovis_AF212297_mask.bed -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:27,618   copying build/lib/snipgenie/data/Msmeg-MC2.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:28,272   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.fai -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:28,279   copying build/lib/snipgenie/data/RD.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:28,285   copying build/lib/snipgenie/data/Msmeg-MC2.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:29,832   copying build/lib/snipgenie/data/dr_spacers.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:29,836   copying build/lib/snipgenie/data/MTB-H37Rv.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:30,250   copying build/lib/snipgenie/data/Mbovis_csq_format.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:30,475   copying build/lib/snipgenie/data/MAP-K10.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:30,939   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:31,090   copying build/lib/snipgenie/data/Mbovis_AF212297.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:32,467   copying build/lib/snipgenie/data/ireland_clusters.txt -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:32,473   copying build/lib/snipgenie/data/ireland_metadata.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:32,483   copying build/lib/snipgenie/data/Msmeg-MC2.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:32,839   copying build/lib/snipgenie/data/dr_spacers_blast.txt -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:32,852   copying build/lib/snipgenie/data/Mbovis_AF212297.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:33,271   copying build/lib/snipgenie/data/ireland_clade_snps.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:33,277   copying build/lib/snipgenie/data/Mbovis.org_db.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:33,301   copying build/lib/snipgenie/data/nuc_snps_ireland.txt -> build/bdist.linux-armv7l/wheel/snipgenie/data
2021-07-16T14:16:33,392   copying build/lib/snipgenie/description.txt -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,397   copying build/lib/snipgenie/db.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,404   copying build/lib/snipgenie/tables.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,412   copying build/lib/snipgenie/app.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,422   copying build/lib/snipgenie/pybam.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,433   copying build/lib/snipgenie/aligners.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,440   copying build/lib/snipgenie/tests.py -> build/bdist.linux-armv7l/wheel/snipgenie
2021-07-16T14:16:33,444   running install_egg_info
2021-07-16T14:16:33,498   running egg_info
2021-07-16T14:16:33,500   writing top-level names to snipgenie.egg-info/top_level.txt
2021-07-16T14:16:33,502   writing requirements to snipgenie.egg-info/requires.txt
2021-07-16T14:16:33,505   writing snipgenie.egg-info/PKG-INFO
2021-07-16T14:16:33,510   writing entry points to snipgenie.egg-info/entry_points.txt
2021-07-16T14:16:33,512   writing dependency_links to snipgenie.egg-info/dependency_links.txt
2021-07-16T14:16:33,535   reading manifest file 'snipgenie.egg-info/SOURCES.txt'
2021-07-16T14:16:33,551   writing manifest file 'snipgenie.egg-info/SOURCES.txt'
2021-07-16T14:16:33,554   Copying snipgenie.egg-info to build/bdist.linux-armv7l/wheel/snipgenie-0.4.0-py3.5.egg-info
2021-07-16T14:16:33,579   running install_scripts
2021-07-16T14:16:33,791   creating build/bdist.linux-armv7l/wheel/snipgenie-0.4.0.dist-info/WHEEL
2021-07-16T14:17:21,453   Building wheel for snipgenie (setup.py): finished with status 'done'
2021-07-16T14:17:21,878   Created wheel for snipgenie: filename=snipgenie-0.4.0-py3-none-any.whl size=25680545 sha256=ad67e176ad0d7e603c2abe0711ac264a685314c0983acdddeb38ac462875eb95
2021-07-16T14:17:21,879   Stored in directory: /tmp/pip-ephem-wheel-cache-xex4a_kn/wheels/d1/91/57/8fde3c49b649b4a0f535dc088b20fe181c6fe11b6518663ba3
2021-07-16T14:17:21,912 Successfully built snipgenie
2021-07-16T14:17:26,359 Removed build tracker: '/tmp/pip-req-tracker-d0_5s99e'