2021-07-16T17:06:07,861 Created temporary directory: /tmp/pip-ephem-wheel-cache-vwhp3act 2021-07-16T17:06:07,864 Created temporary directory: /tmp/pip-req-tracker-0iwzzywf 2021-07-16T17:06:07,865 Initialized build tracking at /tmp/pip-req-tracker-0iwzzywf 2021-07-16T17:06:07,865 Created build tracker: /tmp/pip-req-tracker-0iwzzywf 2021-07-16T17:06:07,865 Entered build tracker: /tmp/pip-req-tracker-0iwzzywf 2021-07-16T17:06:07,866 Created temporary directory: /tmp/pip-wheel-pesbzyff 2021-07-16T17:06:07,895 1 location(s) to search for versions of sequana: 2021-07-16T17:06:07,895 * https://pypi.org/simple/sequana/ 2021-07-16T17:06:07,896 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-07-16T17:06:07,896 Getting page https://pypi.org/simple/sequana/ 2021-07-16T17:06:07,898 Found index url https://pypi.org/simple 2021-07-16T17:06:08,107 Found link 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https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2021-07-16T17:06:08,122 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2021-07-16T17:06:08,122 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2021-07-16T17:06:08,122 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2021-07-16T17:06:08,123 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2021-07-16T17:06:08,123 Found link https://files.pythonhosted.org/packages/2f/fc/f32fabca2937e7213b16a9feab8b536a76a67278ee5643ba78d628830457/sequana-0.9.6.tar.gz#sha256=879071711f7e9c0537b7f16614caa92e46c3683db1965070068876b0d1fb389c (from https://pypi.org/simple/sequana/), version: 0.9.6 2021-07-16T17:06:08,123 Found link https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 (from https://pypi.org/simple/sequana/), version: 0.9.7 2021-07-16T17:06:08,124 Found link https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c (from https://pypi.org/simple/sequana/), version: 0.9.8 2021-07-16T17:06:08,124 Found link https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 (from https://pypi.org/simple/sequana/), version: 0.10.0 2021-07-16T17:06:08,124 Found link https://files.pythonhosted.org/packages/c9/1b/f84aa4bd2433debe7755a13578e557548b2f82eaffd75eebfd021612d8e0/sequana-0.11.0.tar.gz#sha256=70326f92d0095d016f36d3699ccfd1572eee35f325a3586f755df0553a3dc4f0 (from https://pypi.org/simple/sequana/), version: 0.11.0 2021-07-16T17:06:08,124 Found link https://files.pythonhosted.org/packages/e3/80/c03812cefb6d07bcb93777f3993270291c63424dd3aa86245f440d7a7915/sequana-0.11.1.tar.gz#sha256=f281872d6df4c3cbd0f2b6ecec337e1d37737fa6a519d1bce94672fb6b510d98 (from https://pypi.org/simple/sequana/), version: 0.11.1 2021-07-16T17:06:08,125 Skipping link: not a file: https://pypi.org/simple/sequana/ 2021-07-16T17:06:08,151 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-07-16T17:06:08,170 Collecting sequana==0.9.0 2021-07-16T17:06:08,171 Created temporary directory: /tmp/pip-unpack-bafpdstz 2021-07-16T17:06:10,312 Downloading sequana-0.9.0.tar.gz (20.9 MB) 2021-07-16T17:06:14,906 Added sequana==0.9.0 from https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 to build tracker '/tmp/pip-req-tracker-0iwzzywf' 2021-07-16T17:06:14,908 Running setup.py (path:/tmp/pip-wheel-pesbzyff/sequana_74b74c80278b4decb1fcbd4d6685c6b1/setup.py) egg_info for package sequana 2021-07-16T17:06:14,908 Created temporary directory: /tmp/pip-pip-egg-info-miwtnpes 2021-07-16T17:06:14,909 Running command python setup.py egg_info 2021-07-16T17:06:16,190 running egg_info 2021-07-16T17:06:16,192 creating /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info 2021-07-16T17:06:16,193 writing /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/PKG-INFO 2021-07-16T17:06:16,196 writing dependency_links to /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/dependency_links.txt 2021-07-16T17:06:16,198 writing entry points to /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/entry_points.txt 2021-07-16T17:06:16,199 writing requirements to /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/requires.txt 2021-07-16T17:06:16,200 writing top-level names to /tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/top_level.txt 2021-07-16T17:06:16,202 writing manifest file '/tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/SOURCES.txt' 2021-07-16T17:06:16,675 reading manifest file '/tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/SOURCES.txt' 2021-07-16T17:06:16,677 reading manifest template 'MANIFEST.in' 2021-07-16T17:06:16,681 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-16T17:06:16,683 warning: no previously-included files matching '*pyc' found under directory '*' 2021-07-16T17:06:16,961 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-07-16T17:06:16,963 warning: no previously-included files matching '*' found under directory 'test' 2021-07-16T17:06:16,964 warning: no previously-included files found matching 'sequana/rm2.py' 2021-07-16T17:06:16,964 adding license file 'LICENSE' 2021-07-16T17:06:16,987 writing manifest file '/tmp/pip-pip-egg-info-miwtnpes/sequana.egg-info/SOURCES.txt' 2021-07-16T17:06:17,061 Source in /tmp/pip-wheel-pesbzyff/sequana_74b74c80278b4decb1fcbd4d6685c6b1 has version 0.9.0, which satisfies requirement sequana==0.9.0 from https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 2021-07-16T17:06:17,063 Removed sequana==0.9.0 from https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 from build tracker '/tmp/pip-req-tracker-0iwzzywf' 2021-07-16T17:06:17,067 Created temporary directory: /tmp/pip-unpack-x3wrskev 2021-07-16T17:06:17,068 Building wheels for collected packages: sequana 2021-07-16T17:06:17,071 Created temporary directory: /tmp/pip-wheel-rrsmxee1 2021-07-16T17:06:17,072 Building wheel for sequana (setup.py): started 2021-07-16T17:06:17,072 Destination directory: /tmp/pip-wheel-rrsmxee1 2021-07-16T17:06:17,072 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pesbzyff/sequana_74b74c80278b4decb1fcbd4d6685c6b1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pesbzyff/sequana_74b74c80278b4decb1fcbd4d6685c6b1/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rrsmxee1 2021-07-16T17:06:18,322 running bdist_wheel 2021-07-16T17:06:18,483 running build 2021-07-16T17:06:18,483 running build_py 2021-07-16T17:06:18,624 creating build 2021-07-16T17:06:18,624 creating build/lib 2021-07-16T17:06:18,625 creating build/lib/sequana 2021-07-16T17:06:18,626 copying sequana/misc.py -> build/lib/sequana 2021-07-16T17:06:18,628 copying sequana/compare.py -> build/lib/sequana 2021-07-16T17:06:18,630 copying sequana/lazy.py -> build/lib/sequana 2021-07-16T17:06:18,632 copying sequana/itol.py -> build/lib/sequana 2021-07-16T17:06:18,634 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-07-16T17:06:18,636 copying sequana/fastqc.py -> build/lib/sequana 2021-07-16T17:06:18,638 copying sequana/featurecounts.py -> build/lib/sequana 2021-07-16T17:06:18,640 copying sequana/__init__.py -> build/lib/sequana 2021-07-16T17:06:18,642 copying sequana/bamtools.py -> build/lib/sequana 2021-07-16T17:06:18,646 copying sequana/datatools.py -> build/lib/sequana 2021-07-16T17:06:18,648 copying sequana/tools.py -> build/lib/sequana 2021-07-16T17:06:18,651 copying sequana/taxonomy.py -> build/lib/sequana 2021-07-16T17:06:18,654 copying sequana/sequence.py -> build/lib/sequana 2021-07-16T17:06:18,657 copying sequana/errors.py -> build/lib/sequana 2021-07-16T17:06:18,659 copying sequana/stats.py -> build/lib/sequana 2021-07-16T17:06:18,661 copying sequana/pacbio.py -> build/lib/sequana 2021-07-16T17:06:18,665 copying sequana/snpeff.py -> build/lib/sequana 2021-07-16T17:06:18,668 copying sequana/cigar.py -> build/lib/sequana 2021-07-16T17:06:18,670 copying sequana/lazyimports.py -> build/lib/sequana 2021-07-16T17:06:18,673 copying sequana/expdesign.py -> build/lib/sequana 2021-07-16T17:06:18,675 copying sequana/busco.py -> build/lib/sequana 2021-07-16T17:06:18,678 copying sequana/isoseq.py -> build/lib/sequana 2021-07-16T17:06:18,681 copying sequana/cnv.py -> build/lib/sequana 2021-07-16T17:06:18,682 copying sequana/krona.py -> build/lib/sequana 2021-07-16T17:06:18,684 copying sequana/phred.py -> build/lib/sequana 2021-07-16T17:06:18,687 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-07-16T17:06:18,690 copying sequana/fastq.py -> build/lib/sequana 2021-07-16T17:06:18,694 copying sequana/gff3.py -> build/lib/sequana 2021-07-16T17:06:18,696 copying sequana/coverage.py -> build/lib/sequana 2021-07-16T17:06:18,699 copying sequana/trf.py -> build/lib/sequana 2021-07-16T17:06:18,701 copying sequana/canu_scanner.py -> build/lib/sequana 2021-07-16T17:06:18,703 copying sequana/sniffer.py -> build/lib/sequana 2021-07-16T17:06:18,705 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-07-16T17:06:18,708 copying sequana/assembly.py -> build/lib/sequana 2021-07-16T17:06:18,710 copying sequana/jsontool.py -> build/lib/sequana 2021-07-16T17:06:18,712 copying sequana/vcf_filter.py -> build/lib/sequana 2021-07-16T17:06:18,715 copying sequana/adapters.py -> build/lib/sequana 2021-07-16T17:06:18,719 copying sequana/pipelines_common.py -> build/lib/sequana 2021-07-16T17:06:18,722 copying sequana/iotools.py -> build/lib/sequana 2021-07-16T17:06:18,724 copying sequana/cpg_islands.py -> build/lib/sequana 2021-07-16T17:06:18,726 copying sequana/snaketools.py -> build/lib/sequana 2021-07-16T17:06:18,730 copying sequana/vcftools.py -> build/lib/sequana 2021-07-16T17:06:18,732 copying sequana/iem.py -> build/lib/sequana 2021-07-16T17:06:18,735 copying sequana/bedtools.py -> build/lib/sequana 2021-07-16T17:06:18,741 copying sequana/summary.py -> build/lib/sequana 2021-07-16T17:06:18,744 copying sequana/iuapc.py -> build/lib/sequana 2021-07-16T17:06:18,746 copying sequana/kmer.py -> build/lib/sequana 2021-07-16T17:06:18,747 copying sequana/vst.py -> build/lib/sequana 2021-07-16T17:06:18,749 copying sequana/kraken.py -> build/lib/sequana 2021-07-16T17:06:18,754 copying sequana/kraken_builder.py -> build/lib/sequana 2021-07-16T17:06:18,757 copying sequana/mixture.py -> build/lib/sequana 2021-07-16T17:06:18,760 copying sequana/enrichment.py -> build/lib/sequana 2021-07-16T17:06:18,763 copying sequana/bed.py -> build/lib/sequana 2021-07-16T17:06:18,765 copying sequana/find_motif.py -> build/lib/sequana 2021-07-16T17:06:18,768 copying sequana/contigs.py -> build/lib/sequana 2021-07-16T17:06:18,770 copying sequana/criteria.py -> build/lib/sequana 2021-07-16T17:06:18,772 copying sequana/databases.py -> build/lib/sequana 2021-07-16T17:06:18,774 copying sequana/demultiplex.py -> build/lib/sequana 2021-07-16T17:06:18,777 copying sequana/running_median.py -> build/lib/sequana 2021-07-16T17:06:18,779 copying sequana/fasta.py -> build/lib/sequana 2021-07-16T17:06:18,781 copying sequana/rnadiff.py -> build/lib/sequana 2021-07-16T17:06:18,784 copying sequana/mh.py -> build/lib/sequana 2021-07-16T17:06:18,787 creating build/lib/sequana/rules 2021-07-16T17:06:18,788 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-07-16T17:06:18,790 creating build/lib/sequana/plots 2021-07-16T17:06:18,791 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-07-16T17:06:18,792 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-07-16T17:06:18,795 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-07-16T17:06:18,797 creating build/lib/sequana/utils 2021-07-16T17:06:18,798 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-07-16T17:06:18,800 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-07-16T17:06:18,801 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-07-16T17:06:18,803 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-07-16T17:06:18,807 creating build/lib/sequana/scripts 2021-07-16T17:06:18,808 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,810 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,812 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,814 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,816 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,817 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,819 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,822 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,824 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,827 copying sequana/scripts/gtf_fixer.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,828 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,831 copying sequana/scripts/fastq_head.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,833 copying sequana/scripts/summary.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,835 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,838 copying sequana/scripts/fastq_summary.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,840 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,842 copying sequana/scripts/fastq_count.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,844 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-07-16T17:06:18,847 creating build/lib/sequana/modules_report 2021-07-16T17:06:18,848 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,850 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,852 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,853 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,855 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,857 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,860 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,863 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,865 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,867 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,870 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,873 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,875 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,877 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,879 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,881 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-07-16T17:06:18,884 creating build/lib/sequana/pipelines 2021-07-16T17:06:18,885 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2021-07-16T17:06:18,887 creating build/lib/sequana/viz 2021-07-16T17:06:18,888 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-07-16T17:06:18,890 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-07-16T17:06:18,892 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-07-16T17:06:18,894 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-07-16T17:06:18,895 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-07-16T17:06:18,897 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-07-16T17:06:18,899 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-07-16T17:06:18,901 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-07-16T17:06:18,902 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-07-16T17:06:18,904 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-07-16T17:06:18,906 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-07-16T17:06:18,908 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-07-16T17:06:18,910 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-07-16T17:06:18,912 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-07-16T17:06:18,914 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-07-16T17:06:18,917 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-07-16T17:06:18,919 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-07-16T17:06:18,922 creating build/lib/sequana/sphinxext 2021-07-16T17:06:18,922 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2021-07-16T17:06:18,924 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2021-07-16T17:06:18,926 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2021-07-16T17:06:18,928 creating build/lib/sequana/resources 2021-07-16T17:06:18,929 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-07-16T17:06:18,931 creating build/lib/sequana/multiqc 2021-07-16T17:06:18,932 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,934 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,936 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,938 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,940 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,942 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,945 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,947 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,949 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,951 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-07-16T17:06:18,955 creating build/lib/sequana/gui 2021-07-16T17:06:18,956 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2021-07-16T17:06:18,958 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2021-07-16T17:06:18,961 copying sequana/gui/messages.py -> build/lib/sequana/gui 2021-07-16T17:06:18,962 copying sequana/gui/help.py -> build/lib/sequana/gui 2021-07-16T17:06:18,964 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2021-07-16T17:06:18,965 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2021-07-16T17:06:18,970 copying sequana/gui/tools.py -> build/lib/sequana/gui 2021-07-16T17:06:18,972 copying sequana/gui/about.py -> build/lib/sequana/gui 2021-07-16T17:06:18,974 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2021-07-16T17:06:18,976 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2021-07-16T17:06:18,978 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2021-07-16T17:06:18,981 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2021-07-16T17:06:18,983 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2021-07-16T17:06:18,985 copying sequana/gui/browser.py -> build/lib/sequana/gui 2021-07-16T17:06:18,987 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2021-07-16T17:06:18,989 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2021-07-16T17:06:18,994 creating build/lib/sequana/rules/Assembly 2021-07-16T17:06:18,995 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2021-07-16T17:06:18,997 creating build/lib/sequana/rules/picard-tools 2021-07-16T17:06:18,998 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-07-16T17:06:19,000 creating build/lib/sequana/rules/Adapters 2021-07-16T17:06:19,001 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2021-07-16T17:06:19,003 creating build/lib/sequana/rules/sambamba 2021-07-16T17:06:19,003 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-07-16T17:06:19,005 creating build/lib/sequana/rules/Taxonomy 2021-07-16T17:06:19,006 copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy 2021-07-16T17:06:19,008 creating build/lib/sequana/rules/deeptools 2021-07-16T17:06:19,009 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-07-16T17:06:19,011 creating build/lib/sequana/rules/Utils 2021-07-16T17:06:19,012 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-07-16T17:06:19,014 creating build/lib/sequana/rules/Pacbio 2021-07-16T17:06:19,014 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-07-16T17:06:19,017 creating build/lib/sequana/rules/idr 2021-07-16T17:06:19,017 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-07-16T17:06:19,020 creating build/lib/sequana/rules/SnpEff 2021-07-16T17:06:19,020 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-07-16T17:06:19,022 creating build/lib/sequana/rules/Variant_caller 2021-07-16T17:06:19,023 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-07-16T17:06:19,025 creating build/lib/sequana/rules/codecs 2021-07-16T17:06:19,026 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-07-16T17:06:19,028 creating build/lib/sequana/resources/snpeff 2021-07-16T17:06:19,029 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-07-16T17:06:19,031 creating build/lib/sequana/resources/templates 2021-07-16T17:06:19,031 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-07-16T17:06:19,034 creating build/lib/sequana/resources/testing 2021-07-16T17:06:19,035 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,037 creating build/lib/sequana/resources/css 2021-07-16T17:06:19,037 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-07-16T17:06:19,040 creating build/lib/sequana/resources/js 2021-07-16T17:06:19,040 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-07-16T17:06:19,042 creating build/lib/sequana/resources/busco 2021-07-16T17:06:19,043 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-07-16T17:06:19,045 creating build/lib/sequana/resources/images 2021-07-16T17:06:19,046 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-07-16T17:06:19,048 creating build/lib/sequana/resources/data 2021-07-16T17:06:19,049 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-07-16T17:06:19,051 creating build/lib/sequana/resources/canvas 2021-07-16T17:06:19,052 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-07-16T17:06:19,054 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-07-16T17:06:19,056 creating build/lib/sequana/resources/testing/rnadiff 2021-07-16T17:06:19,057 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2021-07-16T17:06:19,059 creating build/lib/sequana/resources/data/adapters 2021-07-16T17:06:19,060 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:19,294 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-07-16T17:06:19,296 creating build/lib/sequana/rules/preSARTools 2021-07-16T17:06:19,296 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-07-16T17:06:19,299 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-07-16T17:06:19,299 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-07-16T17:06:19,302 creating build/lib/sequana/rules/chipuanar 2021-07-16T17:06:19,303 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2021-07-16T17:06:19,305 creating build/lib/sequana/rules/feature_counts 2021-07-16T17:06:19,306 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-07-16T17:06:19,308 creating build/lib/sequana/rules/rnaseqc2 2021-07-16T17:06:19,309 copying sequana/rules/rnaseqc2/rnaseqc2.rules -> build/lib/sequana/rules/rnaseqc2 2021-07-16T17:06:19,311 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-07-16T17:06:19,312 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-07-16T17:06:19,314 creating build/lib/sequana/rules/multiqc2 2021-07-16T17:06:19,315 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-07-16T17:06:19,317 creating build/lib/sequana/rules/bed_to_gff 2021-07-16T17:06:19,318 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-07-16T17:06:19,320 creating build/lib/sequana/rules/revcomp_rule 2021-07-16T17:06:19,321 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-07-16T17:06:19,323 creating build/lib/sequana/rules/igvtools 2021-07-16T17:06:19,324 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-07-16T17:06:19,326 creating build/lib/sequana/rules/conda 2021-07-16T17:06:19,327 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-07-16T17:06:19,329 creating build/lib/sequana/rules/star_index 2021-07-16T17:06:19,330 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-07-16T17:06:19,332 creating build/lib/sequana/rules/fastqc_dynamic 2021-07-16T17:06:19,333 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2021-07-16T17:06:19,336 creating build/lib/sequana/rules/format_contigs 2021-07-16T17:06:19,336 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-07-16T17:06:19,339 creating build/lib/sequana/rules/summary_pipeline 2021-07-16T17:06:19,340 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-07-16T17:06:19,343 creating build/lib/sequana/rules/feature_counts_dynamic 2021-07-16T17:06:19,343 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2021-07-16T17:06:19,346 creating build/lib/sequana/rules/copy_multiple_files 2021-07-16T17:06:19,346 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-07-16T17:06:19,349 creating build/lib/sequana/rules/DupRadar 2021-07-16T17:06:19,350 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-07-16T17:06:19,352 creating build/lib/sequana/rules/bowtie2_index_dynamic 2021-07-16T17:06:19,353 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2021-07-16T17:06:19,355 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-07-16T17:06:19,356 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-07-16T17:06:19,358 creating build/lib/sequana/rules/rulegraph 2021-07-16T17:06:19,359 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-07-16T17:06:19,362 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-07-16T17:06:19,362 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-07-16T17:06:19,365 creating build/lib/sequana/rules/spikes_counting 2021-07-16T17:06:19,366 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-07-16T17:06:19,368 creating build/lib/sequana/rules/mapping_analysis 2021-07-16T17:06:19,369 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-07-16T17:06:19,371 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-07-16T17:06:19,372 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-07-16T17:06:19,374 creating build/lib/sequana/rules/sequana_coverage 2021-07-16T17:06:19,375 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-07-16T17:06:19,378 creating build/lib/sequana/rules/bowtie1_index_dynamic 2021-07-16T17:06:19,379 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2021-07-16T17:06:19,381 creating build/lib/sequana/rules/prokka 2021-07-16T17:06:19,382 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-07-16T17:06:19,384 creating build/lib/sequana/rules/multiqc 2021-07-16T17:06:19,385 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-07-16T17:06:19,387 creating build/lib/sequana/rules/fastq_sampling 2021-07-16T17:06:19,388 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-07-16T17:06:19,391 creating build/lib/sequana/rules/quast 2021-07-16T17:06:19,392 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-07-16T17:06:19,394 creating build/lib/sequana/rules/salmon_mapping 2021-07-16T17:06:19,395 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-07-16T17:06:19,398 creating build/lib/sequana/rules/bam_quality_filter 2021-07-16T17:06:19,399 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-07-16T17:06:19,401 creating build/lib/sequana/rules/dag 2021-07-16T17:06:19,402 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-07-16T17:06:19,404 creating build/lib/sequana/rules/samtools_sort 2021-07-16T17:06:19,405 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-07-16T17:06:19,408 creating build/lib/sequana/rules/bam_analysis 2021-07-16T17:06:19,408 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-07-16T17:06:19,411 creating build/lib/sequana/rules/star_mapping 2021-07-16T17:06:19,411 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-07-16T17:06:19,414 creating build/lib/sequana/rules/samtools_depth 2021-07-16T17:06:19,415 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-07-16T17:06:19,417 creating build/lib/sequana/rules/indel_realigner 2021-07-16T17:06:19,418 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-07-16T17:06:19,420 creating build/lib/sequana/rules/tophat_mapping 2021-07-16T17:06:19,421 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-07-16T17:06:19,423 creating build/lib/sequana/rules/remove_blacklist 2021-07-16T17:06:19,424 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-07-16T17:06:19,426 creating build/lib/sequana/rules/bwa_index 2021-07-16T17:06:19,427 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-07-16T17:06:19,429 creating build/lib/sequana/rules/bwa_mem_dynamic 2021-07-16T17:06:19,430 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2021-07-16T17:06:19,433 creating build/lib/sequana/rules/SARTools 2021-07-16T17:06:19,433 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-07-16T17:06:19,436 creating build/lib/sequana/rules/digital_normalisation 2021-07-16T17:06:19,437 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-07-16T17:06:19,440 creating build/lib/sequana/rules/salmon_index 2021-07-16T17:06:19,441 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-07-16T17:06:19,443 creating build/lib/sequana/rules/fastq_stats_dynamic 2021-07-16T17:06:19,444 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2021-07-16T17:06:19,447 creating build/lib/sequana/rules/spp 2021-07-16T17:06:19,448 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-07-16T17:06:19,451 creating build/lib/sequana/rules/Assembly/spades 2021-07-16T17:06:19,452 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2021-07-16T17:06:19,454 creating build/lib/sequana/rules/Assembly/busco 2021-07-16T17:06:19,455 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2021-07-16T17:06:19,457 creating build/lib/sequana/rules/Assembly/busco_analysis 2021-07-16T17:06:19,458 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2021-07-16T17:06:19,461 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2021-07-16T17:06:19,462 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2021-07-16T17:06:19,464 creating build/lib/sequana/rules/Assembly/canu 2021-07-16T17:06:19,465 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2021-07-16T17:06:19,467 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-07-16T17:06:19,468 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-07-16T17:06:19,471 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-07-16T17:06:19,472 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-07-16T17:06:19,474 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-07-16T17:06:19,475 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-07-16T17:06:19,477 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-07-16T17:06:19,478 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-07-16T17:06:19,481 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-07-16T17:06:19,481 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-07-16T17:06:19,484 creating build/lib/sequana/rules/Adapters/adapter_removal 2021-07-16T17:06:19,485 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2021-07-16T17:06:19,487 creating build/lib/sequana/rules/Adapters/cutadapt 2021-07-16T17:06:19,488 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2021-07-16T17:06:19,492 creating build/lib/sequana/rules/Adapters/identify_adapters 2021-07-16T17:06:19,493 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2021-07-16T17:06:19,495 creating build/lib/sequana/rules/Adapters/alien_trimmer 2021-07-16T17:06:19,496 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2021-07-16T17:06:19,499 creating build/lib/sequana/rules/peak_calling 2021-07-16T17:06:19,499 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-07-16T17:06:19,500 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-07-16T17:06:19,503 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-07-16T17:06:19,504 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-07-16T17:06:19,506 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-07-16T17:06:19,507 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-07-16T17:06:19,509 creating build/lib/sequana/rules/Taxonomy/fastq_screen_report 2021-07-16T17:06:19,510 copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report 2021-07-16T17:06:19,513 creating build/lib/sequana/rules/Taxonomy/fastq_screen 2021-07-16T17:06:19,514 copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen 2021-07-16T17:06:19,516 creating build/lib/sequana/rules/multiqc/2.0 2021-07-16T17:06:19,517 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-07-16T17:06:19,519 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-07-16T17:06:19,520 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-07-16T17:06:19,522 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-07-16T17:06:19,523 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-07-16T17:06:19,526 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-07-16T17:06:19,527 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-07-16T17:06:19,530 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-07-16T17:06:19,531 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-07-16T17:06:19,533 creating build/lib/sequana/rules/deeptools/bamCoverage 2021-07-16T17:06:19,534 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2021-07-16T17:06:19,537 creating build/lib/sequana/rules/Utils/dynamic_copy 2021-07-16T17:06:19,538 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2021-07-16T17:06:19,540 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-07-16T17:06:19,541 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-07-16T17:06:19,544 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2021-07-16T17:06:19,545 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2021-07-16T17:06:19,548 creating build/lib/sequana/rules/Pacbio/pacbio_quality 2021-07-16T17:06:19,549 copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality 2021-07-16T17:06:19,551 creating build/lib/sequana/rules/idr/union_peaks 2021-07-16T17:06:19,552 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-07-16T17:06:19,555 creating build/lib/sequana/rules/idr/intersectionApproach 2021-07-16T17:06:19,555 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-07-16T17:06:19,558 creating build/lib/sequana/rules/idr/metrics_peaks 2021-07-16T17:06:19,559 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-07-16T17:06:19,561 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-07-16T17:06:19,562 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-07-16T17:06:19,565 creating build/lib/sequana/rules/idr/compute_idr 2021-07-16T17:06:19,566 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-07-16T17:06:19,568 creating build/lib/sequana/rules/idr/select_peaks 2021-07-16T17:06:19,569 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-07-16T17:06:19,572 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-07-16T17:06:19,573 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-07-16T17:06:19,575 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-07-16T17:06:19,576 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-07-16T17:06:19,578 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-07-16T17:06:19,579 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-07-16T17:06:19,581 creating build/lib/sequana/rules/Variant_caller/freebayes 2021-07-16T17:06:19,582 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2021-07-16T17:06:19,585 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-07-16T17:06:19,585 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-07-16T17:06:19,588 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-07-16T17:06:19,589 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-07-16T17:06:19,592 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-07-16T17:06:19,592 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-07-16T17:06:19,595 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-07-16T17:06:19,596 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-07-16T17:06:19,598 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-07-16T17:06:19,599 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-07-16T17:06:19,601 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-07-16T17:06:19,602 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-07-16T17:06:19,605 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-07-16T17:06:19,605 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-07-16T17:06:19,608 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-07-16T17:06:19,609 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-07-16T17:06:19,611 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-07-16T17:06:19,612 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-07-16T17:06:19,615 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-07-16T17:06:19,615 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-07-16T17:06:19,618 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-07-16T17:06:19,619 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-07-16T17:06:19,621 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-07-16T17:06:19,622 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-07-16T17:06:19,624 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-07-16T17:06:19,625 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-07-16T17:06:19,628 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-07-16T17:06:19,631 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-07-16T17:06:19,635 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-07-16T17:06:19,637 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-07-16T17:06:19,640 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-07-16T17:06:19,641 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-07-16T17:06:19,644 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-07-16T17:06:19,645 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-07-16T17:06:19,647 creating build/lib/sequana/rules/Taxonomy/kraken 2021-07-16T17:06:19,648 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 2021-07-16T17:06:19,649 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 2021-07-16T17:06:19,652 creating build/lib/sequana/rules/Taxonomy/kraken/1.0 2021-07-16T17:06:19,653 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 2021-07-16T17:06:19,656 creating build/lib/sequana/rules/SnpEff/snpeff 2021-07-16T17:06:19,656 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-07-16T17:06:19,658 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-07-16T17:06:19,661 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-07-16T17:06:19,662 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-07-16T17:06:19,665 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-07-16T17:06:19,665 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-07-16T17:06:19,667 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-07-16T17:06:19,669 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-07-16T17:06:19,670 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-07-16T17:06:19,673 creating build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,674 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,677 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,679 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,682 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,684 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,686 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,689 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2021-07-16T17:06:19,691 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-07-16T17:06:19,694 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-07-16T17:06:19,697 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-07-16T17:06:19,699 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-07-16T17:06:19,701 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-07-16T17:06:19,704 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,706 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,708 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,711 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,714 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,716 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,719 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,721 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,724 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,729 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,731 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,734 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,737 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,767 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,774 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,780 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,790 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,795 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,799 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,816 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,819 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,831 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,833 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,843 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,845 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,847 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,850 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,858 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,862 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,865 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,867 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,869 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,872 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,877 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,881 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,883 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,885 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,887 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,890 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,893 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,895 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,898 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,900 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,903 copying sequana/resources/testing/test.fasta.fai -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,905 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,910 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,913 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,917 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,920 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,925 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,931 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,933 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,935 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,938 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,940 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,942 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,947 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,951 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,953 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,955 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,957 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,961 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,964 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,966 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,977 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,980 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,984 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,990 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,993 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,995 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:19,997 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,008 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,010 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,012 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,014 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,016 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,019 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,021 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,023 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,029 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,031 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,034 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,037 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,041 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,043 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,047 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,049 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,053 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,056 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,059 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,067 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,069 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,072 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-07-16T17:06:20,075 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-07-16T17:06:20,078 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-07-16T17:06:20,081 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-07-16T17:06:20,083 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-07-16T17:06:20,086 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-07-16T17:06:20,092 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,095 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,097 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,103 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,106 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,111 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,120 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,124 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,127 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,132 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,137 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,140 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-07-16T17:06:20,150 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-07-16T17:06:20,153 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-07-16T17:06:20,156 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-07-16T17:06:20,158 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-07-16T17:06:20,162 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-07-16T17:06:20,164 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-07-16T17:06:20,167 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-07-16T17:06:20,170 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-07-16T17:06:20,175 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-07-16T17:06:20,199 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2021-07-16T17:06:20,201 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-07-16T17:06:20,203 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,206 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2021-07-16T17:06:20,209 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-07-16T17:06:20,225 copying sequana/resources/data/phiX174.fa.amb -> build/lib/sequana/resources/data 2021-07-16T17:06:20,228 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2021-07-16T17:06:20,230 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,334 copying sequana/resources/data/phiX174.fa.bwt -> build/lib/sequana/resources/data 2021-07-16T17:06:20,336 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-07-16T17:06:20,343 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,350 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2021-07-16T17:06:20,352 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,446 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-07-16T17:06:20,456 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-07-16T17:06:20,473 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-07-16T17:06:20,482 copying sequana/resources/data/measles.fa.fai -> build/lib/sequana/resources/data 2021-07-16T17:06:20,485 copying sequana/resources/data/phiX174.fa.pac -> build/lib/sequana/resources/data 2021-07-16T17:06:20,487 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2021-07-16T17:06:20,491 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2021-07-16T17:06:20,495 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2021-07-16T17:06:20,497 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-07-16T17:06:20,501 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-07-16T17:06:20,505 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,512 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-07-16T17:06:20,526 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-07-16T17:06:20,529 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2021-07-16T17:06:20,533 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2021-07-16T17:06:20,536 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-07-16T17:06:20,538 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,548 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2021-07-16T17:06:20,551 copying sequana/resources/data/phiX174.fa.sa -> build/lib/sequana/resources/data 2021-07-16T17:06:20,554 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-07-16T17:06:20,560 copying sequana/resources/data/phiX174.fa.ann -> build/lib/sequana/resources/data 2021-07-16T17:06:20,563 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2021-07-16T17:06:20,563 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:20,565 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:20,679 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:21,022 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-07-16T17:06:21,022 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-07-16T17:06:21,023 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-07-16T17:06:21,054 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2021-07-16T17:06:21,054 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-07-16T17:06:21,055 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-07-16T17:06:21,075 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2021-07-16T17:06:21,075 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:21,077 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:21,080 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:21,084 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,087 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,090 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,092 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,094 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,097 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,100 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,102 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,105 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,108 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,110 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,112 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,115 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,118 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,120 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,123 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,126 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,128 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,131 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,134 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,137 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,139 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,142 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,144 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,147 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,149 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,152 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,155 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,157 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,160 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,162 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-07-16T17:06:21,196 installing to build/bdist.linux-armv7l/wheel 2021-07-16T17:06:21,196 running install 2021-07-16T17:06:21,197 running install_lib 2021-07-16T17:06:21,201 creating build/bdist.linux-armv7l 2021-07-16T17:06:21,201 creating build/bdist.linux-armv7l/wheel 2021-07-16T17:06:21,204 creating build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,204 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,206 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,209 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,212 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-07-16T17:06:21,213 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-07-16T17:06:21,214 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-07-16T17:06:21,216 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-07-16T17:06:21,218 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-07-16T17:06:21,219 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-07-16T17:06:21,221 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-07-16T17:06:21,223 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-07-16T17:06:21,223 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-07-16T17:06:21,226 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-07-16T17:06:21,227 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-07-16T17:06:21,229 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-07-16T17:06:21,230 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-07-16T17:06:21,233 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-07-16T17:06:21,234 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-07-16T17:06:21,236 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-07-16T17:06:21,237 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-07-16T17:06:21,240 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-07-16T17:06:21,240 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-07-16T17:06:21,243 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-07-16T17:06:21,245 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-07-16T17:06:21,246 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-07-16T17:06:21,248 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-07-16T17:06:21,250 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-07-16T17:06:21,251 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-07-16T17:06:21,254 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-07-16T17:06:21,254 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-07-16T17:06:21,257 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-07-16T17:06:21,258 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-07-16T17:06:21,260 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-07-16T17:06:21,261 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-07-16T17:06:21,264 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-07-16T17:06:21,265 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-07-16T17:06:21,267 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 2021-07-16T17:06:21,268 copying build/lib/sequana/rules/rnaseqc2/rnaseqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 2021-07-16T17:06:21,271 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-07-16T17:06:21,271 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-07-16T17:06:21,274 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-07-16T17:06:21,275 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-07-16T17:06:21,277 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-07-16T17:06:21,279 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-07-16T17:06:21,280 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-07-16T17:06:21,282 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-07-16T17:06:21,283 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-07-16T17:06:21,286 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-07-16T17:06:21,287 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-07-16T17:06:21,289 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-07-16T17:06:21,290 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-07-16T17:06:21,292 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-07-16T17:06:21,295 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-07-16T17:06:21,296 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-07-16T17:06:21,298 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-07-16T17:06:21,299 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-07-16T17:06:21,302 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-07-16T17:06:21,303 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-07-16T17:06:21,305 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-07-16T17:06:21,306 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-07-16T17:06:21,308 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-07-16T17:06:21,310 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-07-16T17:06:21,313 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-07-16T17:06:21,314 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-07-16T17:06:21,316 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-07-16T17:06:21,317 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-07-16T17:06:21,320 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-07-16T17:06:21,321 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-07-16T17:06:21,323 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-07-16T17:06:21,324 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-07-16T17:06:21,327 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-07-16T17:06:21,328 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-07-16T17:06:21,330 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-07-16T17:06:21,331 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-07-16T17:06:21,333 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-07-16T17:06:21,334 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-07-16T17:06:21,337 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-07-16T17:06:21,337 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-07-16T17:06:21,340 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-07-16T17:06:21,341 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-07-16T17:06:21,344 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-07-16T17:06:21,344 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-07-16T17:06:21,347 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-07-16T17:06:21,348 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-07-16T17:06:21,350 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-07-16T17:06:21,351 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-07-16T17:06:21,354 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-07-16T17:06:21,355 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-07-16T17:06:21,356 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-07-16T17:06:21,359 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-07-16T17:06:21,360 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-07-16T17:06:21,363 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-07-16T17:06:21,363 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-07-16T17:06:21,366 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-07-16T17:06:21,367 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-07-16T17:06:21,368 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-07-16T17:06:21,371 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-07-16T17:06:21,373 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-07-16T17:06:21,374 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-07-16T17:06:21,376 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2021-07-16T17:06:21,377 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2021-07-16T17:06:21,380 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2021-07-16T17:06:21,381 copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2021-07-16T17:06:21,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken 2021-07-16T17:06:21,385 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2021-07-16T17:06:21,386 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2021-07-16T17:06:21,389 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2021-07-16T17:06:21,389 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2021-07-16T17:06:21,392 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2021-07-16T17:06:21,393 copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2021-07-16T17:06:21,395 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-07-16T17:06:21,396 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-07-16T17:06:21,399 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-07-16T17:06:21,400 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-07-16T17:06:21,403 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-07-16T17:06:21,403 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-07-16T17:06:21,406 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-07-16T17:06:21,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-07-16T17:06:21,408 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-07-16T17:06:21,410 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-07-16T17:06:21,413 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-07-16T17:06:21,414 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-07-16T17:06:21,416 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-07-16T17:06:21,417 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-07-16T17:06:21,420 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-07-16T17:06:21,421 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-07-16T17:06:21,423 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-07-16T17:06:21,425 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-07-16T17:06:21,426 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-07-16T17:06:21,428 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-07-16T17:06:21,430 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-07-16T17:06:21,431 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-07-16T17:06:21,433 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-07-16T17:06:21,434 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-07-16T17:06:21,436 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-07-16T17:06:21,437 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-07-16T17:06:21,440 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-07-16T17:06:21,441 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2021-07-16T17:06:21,444 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-07-16T17:06:21,444 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-07-16T17:06:21,447 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-07-16T17:06:21,448 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-07-16T17:06:21,450 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-07-16T17:06:21,451 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-07-16T17:06:21,453 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-07-16T17:06:21,454 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-07-16T17:06:21,457 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-07-16T17:06:21,457 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-07-16T17:06:21,460 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-07-16T17:06:21,461 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-07-16T17:06:21,463 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-07-16T17:06:21,464 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-07-16T17:06:21,467 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-07-16T17:06:21,467 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-07-16T17:06:21,470 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-07-16T17:06:21,471 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-07-16T17:06:21,473 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-07-16T17:06:21,474 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-07-16T17:06:21,477 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-07-16T17:06:21,478 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-07-16T17:06:21,480 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-07-16T17:06:21,481 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-07-16T17:06:21,484 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2021-07-16T17:06:21,484 copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2021-07-16T17:06:21,487 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-07-16T17:06:21,488 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-07-16T17:06:21,491 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-07-16T17:06:21,491 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-07-16T17:06:21,494 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-07-16T17:06:21,494 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-07-16T17:06:21,497 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-07-16T17:06:21,498 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-07-16T17:06:21,501 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-07-16T17:06:21,502 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-07-16T17:06:21,504 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-07-16T17:06:21,505 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-07-16T17:06:21,508 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-07-16T17:06:21,509 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-07-16T17:06:21,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-07-16T17:06:21,513 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-07-16T17:06:21,515 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-07-16T17:06:21,516 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-07-16T17:06:21,519 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-07-16T17:06:21,519 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-07-16T17:06:21,522 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-07-16T17:06:21,523 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-07-16T17:06:21,526 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-07-16T17:06:21,526 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-07-16T17:06:21,529 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-07-16T17:06:21,530 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-07-16T17:06:21,533 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-07-16T17:06:21,534 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-07-16T17:06:21,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-07-16T17:06:21,537 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-07-16T17:06:21,539 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-07-16T17:06:21,541 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-07-16T17:06:21,542 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-07-16T17:06:21,543 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-07-16T17:06:21,546 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-07-16T17:06:21,546 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-07-16T17:06:21,548 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-07-16T17:06:21,551 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-07-16T17:06:21,552 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-07-16T17:06:21,554 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-07-16T17:06:21,555 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-07-16T17:06:21,556 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-07-16T17:06:21,559 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-07-16T17:06:21,560 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-07-16T17:06:21,563 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-07-16T17:06:21,564 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-07-16T17:06:21,566 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-07-16T17:06:21,567 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-07-16T17:06:21,570 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-07-16T17:06:21,571 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-07-16T17:06:21,573 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-07-16T17:06:21,574 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-07-16T17:06:21,576 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-07-16T17:06:21,577 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-07-16T17:06:21,580 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-07-16T17:06:21,581 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-07-16T17:06:21,583 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-07-16T17:06:21,584 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-07-16T17:06:21,587 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-07-16T17:06:21,588 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-07-16T17:06:21,590 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-07-16T17:06:21,591 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-07-16T17:06:21,594 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-07-16T17:06:21,595 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-07-16T17:06:21,596 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-07-16T17:06:21,598 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-07-16T17:06:21,600 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-07-16T17:06:21,601 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-07-16T17:06:21,604 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-07-16T17:06:21,605 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-07-16T17:06:21,607 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-07-16T17:06:21,608 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-07-16T17:06:21,611 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-07-16T17:06:21,612 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-07-16T17:06:21,614 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-07-16T17:06:21,615 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-07-16T17:06:21,618 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-07-16T17:06:21,619 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-07-16T17:06:21,622 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-07-16T17:06:21,623 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-07-16T17:06:21,625 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-07-16T17:06:21,626 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-07-16T17:06:21,629 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-07-16T17:06:21,630 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-07-16T17:06:21,632 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-07-16T17:06:21,633 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-07-16T17:06:21,636 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-07-16T17:06:21,636 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-07-16T17:06:21,639 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-07-16T17:06:21,640 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-07-16T17:06:21,643 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-07-16T17:06:21,644 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-07-16T17:06:21,645 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-07-16T17:06:21,648 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-07-16T17:06:21,650 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,652 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,655 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,657 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,659 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,662 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-07-16T17:06:21,663 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-07-16T17:06:21,665 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-07-16T17:06:21,666 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-07-16T17:06:21,669 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-07-16T17:06:21,672 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,676 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,678 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,680 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,684 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,689 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,691 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,692 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,696 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,700 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,700 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,703 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,705 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,708 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,710 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,712 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,714 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,716 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,719 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,722 copying build/lib/sequana/scripts/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,724 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,726 copying build/lib/sequana/scripts/fastq_head.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,728 copying build/lib/sequana/scripts/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,730 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,733 copying build/lib/sequana/scripts/fastq_summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,734 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,737 copying build/lib/sequana/scripts/fastq_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,739 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-07-16T17:06:21,741 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,743 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,745 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,748 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,752 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,752 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,755 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,757 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,758 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,761 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,763 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,766 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,768 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,771 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,773 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,775 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,778 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,780 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,782 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,785 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,787 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-07-16T17:06:21,789 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,792 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-07-16T17:06:21,793 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-07-16T17:06:21,796 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,796 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,800 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,801 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,803 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,805 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,807 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,809 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-07-16T17:06:21,811 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,813 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,814 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,816 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,818 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,821 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,822 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,824 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,826 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,828 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,830 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,832 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,834 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,836 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,839 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,841 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,843 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,845 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,847 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-07-16T17:06:21,850 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,852 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,854 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,857 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,860 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,863 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,865 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,867 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,869 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-07-16T17:06:21,870 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-07-16T17:06:21,872 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-07-16T17:06:21,874 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-07-16T17:06:21,876 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,878 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:21,881 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-07-16T17:06:21,883 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-07-16T17:06:21,884 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-07-16T17:06:21,885 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-07-16T17:06:21,888 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-07-16T17:06:21,889 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-07-16T17:06:21,891 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-07-16T17:06:21,893 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-07-16T17:06:21,895 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-07-16T17:06:21,897 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-07-16T17:06:21,901 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,901 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,906 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,908 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,910 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,913 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,932 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,934 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,935 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,940 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,942 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,944 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,955 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,956 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,958 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,970 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,971 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,981 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,983 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,985 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,986 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,994 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,997 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:21,999 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,000 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,003 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,005 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,007 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,009 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,010 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,015 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,018 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,020 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,022 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,025 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,027 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,030 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,032 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,034 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,037 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,038 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,041 copying build/lib/sequana/resources/testing/test.fasta.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,043 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,044 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,048 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,051 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,054 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,056 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,060 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,066 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,067 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,069 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,071 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,073 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,075 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,077 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,079 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,083 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,086 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,088 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,090 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,092 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,095 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-07-16T17:06:22,096 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2021-07-16T17:06:22,098 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:22,099 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:22,226 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2021-07-16T17:06:22,593 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-07-16T17:06:22,595 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-07-16T17:06:22,597 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-07-16T17:06:22,598 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-07-16T17:06:22,632 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2021-07-16T17:06:22,633 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-07-16T17:06:22,634 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2021-07-16T17:06:22,654 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2021-07-16T17:06:22,655 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:22,656 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:22,659 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2021-07-16T17:06:22,662 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,665 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,668 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,676 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,679 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,682 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,688 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,690 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,693 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,694 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,706 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,707 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,709 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,711 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,713 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,715 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,717 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,719 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,724 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,726 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,728 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,731 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,733 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,737 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,739 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,742 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,744 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,747 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,749 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,752 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,757 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,759 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,761 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-07-16T17:06:22,764 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,765 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,768 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,770 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,772 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,774 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,776 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-07-16T17:06:22,782 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,783 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,785 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,787 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,791 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,792 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,795 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,800 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,811 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,815 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,818 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,821 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,826 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,828 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-07-16T17:06:22,840 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-07-16T17:06:22,842 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-07-16T17:06:22,848 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-07-16T17:06:22,854 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-07-16T17:06:22,855 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-07-16T17:06:22,856 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-07-16T17:06:22,859 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-07-16T17:06:22,861 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-07-16T17:06:22,867 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,868 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,895 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,897 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,898 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,901 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,904 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,909 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,973 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,976 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:22,982 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,983 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,986 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,988 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,991 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,994 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,996 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:22,998 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,000 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,003 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,005 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,007 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,009 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,011 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,013 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,015 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,017 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,019 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,022 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,024 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,026 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,028 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,030 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,033 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,035 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,037 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,039 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,041 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,043 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,046 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,048 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,050 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,052 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-07-16T17:06:23,054 copying build/lib/sequana/resources/data/phiX174.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,056 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,057 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,165 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,167 copying build/lib/sequana/resources/data/phiX174.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,170 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,179 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,184 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,186 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,285 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,297 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,310 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,313 copying build/lib/sequana/resources/data/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,315 copying build/lib/sequana/resources/data/phiX174.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,317 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,320 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,324 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,327 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,329 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,331 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,334 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,340 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,353 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,355 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,359 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,361 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,363 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,369 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,372 copying build/lib/sequana/resources/data/phiX174.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,374 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,380 copying build/lib/sequana/resources/data/phiX174.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-07-16T17:06:23,382 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-07-16T17:06:23,383 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-07-16T17:06:23,385 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-07-16T17:06:23,387 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,390 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,392 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,394 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,397 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,400 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,403 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,404 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,406 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,408 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,410 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,413 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,415 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,417 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,420 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,422 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,424 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,427 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-07-16T17:06:23,429 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,431 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,436 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,438 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,440 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,444 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,447 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,449 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,450 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,452 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,457 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,460 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,463 creating build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,464 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,467 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,469 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,471 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,473 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,475 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,478 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,481 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,483 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,484 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,487 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,490 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,492 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,494 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,496 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,498 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-07-16T17:06:23,503 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,507 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,509 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,511 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,513 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,515 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,518 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,520 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,522 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,525 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,527 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-07-16T17:06:23,530 running install_egg_info 2021-07-16T17:06:23,551 running egg_info 2021-07-16T17:06:23,552 writing sequana.egg-info/PKG-INFO 2021-07-16T17:06:23,554 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-07-16T17:06:23,556 writing entry points to sequana.egg-info/entry_points.txt 2021-07-16T17:06:23,557 writing requirements to sequana.egg-info/requires.txt 2021-07-16T17:06:23,559 writing top-level names to sequana.egg-info/top_level.txt 2021-07-16T17:06:23,687 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-07-16T17:06:23,707 reading manifest template 'MANIFEST.in' 2021-07-16T17:06:23,712 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-16T17:06:23,714 warning: no previously-included files matching '*pyc' found under directory '*' 2021-07-16T17:06:24,676 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-07-16T17:06:24,678 warning: no previously-included files matching '*' found under directory 'test' 2021-07-16T17:06:24,680 warning: no previously-included files found matching 'sequana/rm2.py' 2021-07-16T17:06:24,681 adding license file 'LICENSE' 2021-07-16T17:06:24,711 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-07-16T17:06:24,713 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.0-py3.9.egg-info 2021-07-16T17:06:24,728 running install_scripts 2021-07-16T17:06:24,860 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-16T17:06:24,865 creating build/bdist.linux-armv7l/wheel/sequana-0.9.0.dist-info/WHEEL 2021-07-16T17:06:24,867 creating '/tmp/pip-wheel-rrsmxee1/sequana-0.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-16T17:06:24,869 adding 'sequana/__init__.py' 2021-07-16T17:06:24,874 adding 'sequana/adapters.py' 2021-07-16T17:06:24,876 adding 'sequana/assembly.py' 2021-07-16T17:06:24,884 adding 'sequana/bamtools.py' 2021-07-16T17:06:24,886 adding 'sequana/bed.py' 2021-07-16T17:06:24,897 adding 'sequana/bedtools.py' 2021-07-16T17:06:24,899 adding 'sequana/busco.py' 2021-07-16T17:06:24,901 adding 'sequana/canu_scanner.py' 2021-07-16T17:06:24,903 adding 'sequana/cigar.py' 2021-07-16T17:06:24,904 adding 'sequana/cnv.py' 2021-07-16T17:06:24,906 adding 'sequana/compare.py' 2021-07-16T17:06:24,908 adding 'sequana/contigs.py' 2021-07-16T17:06:24,910 adding 'sequana/coverage.py' 2021-07-16T17:06:24,911 adding 'sequana/cpg_islands.py' 2021-07-16T17:06:24,912 adding 'sequana/criteria.py' 2021-07-16T17:06:24,914 adding 'sequana/databases.py' 2021-07-16T17:06:24,916 adding 'sequana/datatools.py' 2021-07-16T17:06:24,917 adding 'sequana/demultiplex.py' 2021-07-16T17:06:24,922 adding 'sequana/enrichment.py' 2021-07-16T17:06:24,923 adding 'sequana/errors.py' 2021-07-16T17:06:24,926 adding 'sequana/expdesign.py' 2021-07-16T17:06:24,927 adding 'sequana/fasta.py' 2021-07-16T17:06:24,933 adding 'sequana/fastq.py' 2021-07-16T17:06:24,935 adding 'sequana/fastqc.py' 2021-07-16T17:06:24,936 adding 'sequana/featurecounts.py' 2021-07-16T17:06:24,938 adding 'sequana/find_motif.py' 2021-07-16T17:06:24,940 adding 'sequana/freebayes_bcf_filter.py' 2021-07-16T17:06:24,942 adding 'sequana/freebayes_vcf_filter.py' 2021-07-16T17:06:24,944 adding 'sequana/gff3.py' 2021-07-16T17:06:24,945 adding 'sequana/iem.py' 2021-07-16T17:06:24,947 adding 'sequana/iotools.py' 2021-07-16T17:06:24,950 adding 'sequana/isoseq.py' 2021-07-16T17:06:24,952 adding 'sequana/itol.py' 2021-07-16T17:06:24,953 adding 'sequana/iuapc.py' 2021-07-16T17:06:24,954 adding 'sequana/jsontool.py' 2021-07-16T17:06:24,955 adding 'sequana/kmer.py' 2021-07-16T17:06:24,964 adding 'sequana/kraken.py' 2021-07-16T17:06:24,968 adding 'sequana/kraken_builder.py' 2021-07-16T17:06:24,970 adding 'sequana/krona.py' 2021-07-16T17:06:24,971 adding 'sequana/lazy.py' 2021-07-16T17:06:24,972 adding 'sequana/lazyimports.py' 2021-07-16T17:06:24,974 adding 'sequana/mh.py' 2021-07-16T17:06:24,975 adding 'sequana/misc.py' 2021-07-16T17:06:24,978 adding 'sequana/mixture.py' 2021-07-16T17:06:24,983 adding 'sequana/pacbio.py' 2021-07-16T17:06:24,985 adding 'sequana/pacbio_amplicon.py' 2021-07-16T17:06:24,987 adding 'sequana/phred.py' 2021-07-16T17:06:24,992 adding 'sequana/pipelines_common.py' 2021-07-16T17:06:24,995 adding 'sequana/rnadiff.py' 2021-07-16T17:06:24,997 adding 'sequana/running_median.py' 2021-07-16T17:06:25,001 adding 'sequana/sequence.py' 2021-07-16T17:06:25,010 adding 'sequana/snaketools.py' 2021-07-16T17:06:25,012 adding 'sequana/sniffer.py' 2021-07-16T17:06:25,014 adding 'sequana/snpeff.py' 2021-07-16T17:06:25,015 adding 'sequana/stats.py' 2021-07-16T17:06:25,017 adding 'sequana/summary.py' 2021-07-16T17:06:25,019 adding 'sequana/taxonomy.py' 2021-07-16T17:06:25,022 adding 'sequana/tools.py' 2021-07-16T17:06:25,024 adding 'sequana/trf.py' 2021-07-16T17:06:25,026 adding 'sequana/vcf_filter.py' 2021-07-16T17:06:25,027 adding 'sequana/vcftools.py' 2021-07-16T17:06:25,029 adding 'sequana/vst.py' 2021-07-16T17:06:25,030 adding 'sequana/gui/__init__.py' 2021-07-16T17:06:25,031 adding 'sequana/gui/about.py' 2021-07-16T17:06:25,033 adding 'sequana/gui/browser.py' 2021-07-16T17:06:25,034 adding 'sequana/gui/file_browser.py' 2021-07-16T17:06:25,036 adding 'sequana/gui/help.py' 2021-07-16T17:06:25,037 adding 'sequana/gui/ipython.py' 2021-07-16T17:06:25,038 adding 'sequana/gui/messages.py' 2021-07-16T17:06:25,040 adding 'sequana/gui/preferences.py' 2021-07-16T17:06:25,049 adding 'sequana/gui/sequana_gui.py' 2021-07-16T17:06:25,051 adding 'sequana/gui/snakemake.py' 2021-07-16T17:06:25,053 adding 'sequana/gui/tools.py' 2021-07-16T17:06:25,054 adding 'sequana/gui/ui_help.py' 2021-07-16T17:06:25,058 adding 'sequana/gui/ui_mainwindow.py' 2021-07-16T17:06:25,061 adding 'sequana/gui/ui_preferences.py' 2021-07-16T17:06:25,063 adding 'sequana/gui/ui_snakemake.py' 2021-07-16T17:06:25,064 adding 'sequana/gui/widgets.py' 2021-07-16T17:06:25,066 adding 'sequana/modules_report/__init__.py' 2021-07-16T17:06:25,068 adding 'sequana/modules_report/bamqc.py' 2021-07-16T17:06:25,070 adding 'sequana/modules_report/base_module.py' 2021-07-16T17:06:25,071 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2021-07-16T17:06:25,074 adding 'sequana/modules_report/coverage.py' 2021-07-16T17:06:25,077 adding 'sequana/modules_report/cutadapt.py' 2021-07-16T17:06:25,079 adding 'sequana/modules_report/fastq_stats.py' 2021-07-16T17:06:25,080 adding 'sequana/modules_report/fastqc.py' 2021-07-16T17:06:25,081 adding 'sequana/modules_report/joint_calling.py' 2021-07-16T17:06:25,083 adding 'sequana/modules_report/kraken.py' 2021-07-16T17:06:25,085 adding 'sequana/modules_report/multi_summary.py' 2021-07-16T17:06:25,087 adding 'sequana/modules_report/pacbio_input_bam.py' 2021-07-16T17:06:25,088 adding 'sequana/modules_report/phix.py' 2021-07-16T17:06:25,090 adding 'sequana/modules_report/quast.py' 2021-07-16T17:06:25,092 adding 'sequana/modules_report/summary.py' 2021-07-16T17:06:25,093 adding 'sequana/modules_report/variant_calling.py' 2021-07-16T17:06:25,095 adding 'sequana/multiqc/__init__.py' 2021-07-16T17:06:25,097 adding 'sequana/multiqc/bamtools_stats.py' 2021-07-16T17:06:25,098 adding 'sequana/multiqc/config.py' 2021-07-16T17:06:25,100 adding 'sequana/multiqc/coverage.py' 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'sequana/resources/css/report.css' 2021-07-16T17:06:25,167 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2021-07-16T17:06:25,180 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2021-07-16T17:06:25,183 adding 'sequana/resources/data/JB409847.bcf' 2021-07-16T17:06:25,231 adding 'sequana/resources/data/JB409847.bed' 2021-07-16T17:06:25,359 adding 'sequana/resources/data/JB409847.cov.csv' 2021-07-16T17:06:25,367 adding 'sequana/resources/data/JB409847.csv' 2021-07-16T17:06:25,369 adding 'sequana/resources/data/JB409847.expected.vcf' 2021-07-16T17:06:25,379 adding 'sequana/resources/data/JB409847.fasta' 2021-07-16T17:06:25,381 adding 'sequana/resources/data/JB409847.filter.vcf' 2021-07-16T17:06:25,393 adding 'sequana/resources/data/JB409847.gbk' 2021-07-16T17:06:25,395 adding 'sequana/resources/data/JB409847.vc.csv' 2021-07-16T17:06:25,398 adding 'sequana/resources/data/JB409847.vcf' 2021-07-16T17:06:25,912 adding 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'sequana/resources/data/measles.fa.pac' 2021-07-16T17:06:26,679 adding 'sequana/resources/data/measles.fa.sa' 2021-07-16T17:06:26,704 adding 'sequana/resources/data/measles.fa.sorted.bam' 2021-07-16T17:06:26,709 adding 'sequana/resources/data/phiX174.fa' 2021-07-16T17:06:26,710 adding 'sequana/resources/data/phiX174.fa.amb' 2021-07-16T17:06:26,711 adding 'sequana/resources/data/phiX174.fa.ann' 2021-07-16T17:06:26,713 adding 'sequana/resources/data/phiX174.fa.bwt' 2021-07-16T17:06:26,714 adding 'sequana/resources/data/phiX174.fa.pac' 2021-07-16T17:06:26,715 adding 'sequana/resources/data/phiX174.fa.sa' 2021-07-16T17:06:26,727 adding 'sequana/resources/data/test_L001_R1_001.fastq.gz' 2021-07-16T17:06:26,740 adding 'sequana/resources/data/test_L002_R1_001.fastq.gz' 2021-07-16T17:06:26,747 adding 'sequana/resources/data/test_hg38_chr18.bam' 2021-07-16T17:06:26,749 adding 'sequana/resources/data/test_small.gff3' 2021-07-16T17:06:26,750 adding 'sequana/resources/data/test_wrong_bed.bed' 2021-07-16T17:06:26,809 adding 'sequana/resources/data/virus.bed' 2021-07-16T17:06:26,813 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa' 2021-07-16T17:06:26,814 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa' 2021-07-16T17:06:26,816 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa' 2021-07-16T17:06:26,818 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa' 2021-07-16T17:06:26,820 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa' 2021-07-16T17:06:26,822 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa' 2021-07-16T17:06:26,823 adding 'sequana/resources/data/adapters/README.rst' 2021-07-16T17:06:26,825 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa' 2021-07-16T17:06:26,826 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa' 2021-07-16T17:06:26,827 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa' 2021-07-16T17:06:26,828 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa' 2021-07-16T17:06:26,829 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa' 2021-07-16T17:06:26,831 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa' 2021-07-16T17:06:26,832 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa' 2021-07-16T17:06:26,833 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa' 2021-07-16T17:06:26,834 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa' 2021-07-16T17:06:26,835 adding 'sequana/resources/data/adapters/__init__.py' 2021-07-16T17:06:26,837 adding 'sequana/resources/data/adapters/adapters_NEBNext_fwd.fa' 2021-07-16T17:06:26,838 adding 'sequana/resources/data/adapters/adapters_NEBNext_rev.fa' 2021-07-16T17:06:26,840 adding 'sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa' 2021-07-16T17:06:26,841 adding 'sequana/resources/data/adapters/adapters_Nextera_fwd.fa' 2021-07-16T17:06:26,843 adding 'sequana/resources/data/adapters/adapters_Nextera_rev.fa' 2021-07-16T17:06:26,844 adding 'sequana/resources/data/adapters/adapters_Nextera_revcomp.fa' 2021-07-16T17:06:26,845 adding 'sequana/resources/data/adapters/adapters_SMARTer_fwd.fa' 2021-07-16T17:06:26,847 adding 'sequana/resources/data/adapters/adapters_SMARTer_rev.fa' 2021-07-16T17:06:26,848 adding 'sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa' 2021-07-16T17:06:26,849 adding 'sequana/resources/data/adapters/adapters_Small_fwd.fa' 2021-07-16T17:06:26,851 adding 'sequana/resources/data/adapters/adapters_Small_rev.fa' 2021-07-16T17:06:26,852 adding 'sequana/resources/data/adapters/adapters_Small_revcomp.fa' 2021-07-16T17:06:26,853 adding 'sequana/resources/data/adapters/adapters_TruSeq_fwd.fa' 2021-07-16T17:06:26,855 adding 'sequana/resources/data/adapters/adapters_TruSeq_rev.fa' 2021-07-16T17:06:26,856 adding 'sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa' 2021-07-16T17:06:26,861 adding 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2021-07-16T17:06:26,986 adding 'sequana/resources/js/jquery.dropdown.min.js' 2021-07-16T17:06:26,987 adding 'sequana/resources/js/jquery.tocPlugin.js' 2021-07-16T17:06:26,990 adding 'sequana/resources/js/papaparse.min.js' 2021-07-16T17:06:26,991 adding 'sequana/resources/snpeff/__init__.py' 2021-07-16T17:06:26,993 adding 'sequana/resources/snpeff/snpEff.config' 2021-07-16T17:06:26,995 adding 'sequana/resources/templates/__init__.py' 2021-07-16T17:06:26,996 adding 'sequana/resources/templates/base.html' 2021-07-16T17:06:26,998 adding 'sequana/resources/templates/joint_calling.html' 2021-07-16T17:06:26,999 adding 'sequana/resources/templates/standard.html' 2021-07-16T17:06:27,001 adding 'sequana/resources/testing/README.rst' 2021-07-16T17:06:27,002 adding 'sequana/resources/testing/__init__.py' 2021-07-16T17:06:27,004 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2021-07-16T17:06:27,011 adding 'sequana/resources/testing/measles.fa' 2021-07-16T17:06:27,013 adding 'sequana/resources/testing/measles.fa.fai' 2021-07-16T17:06:27,015 adding 'sequana/resources/testing/saccer3_truncated.gff' 2021-07-16T17:06:27,017 adding 'sequana/resources/testing/summary_bamtools_stats.txt' 2021-07-16T17:06:27,018 adding 'sequana/resources/testing/summary_coverage1.json' 2021-07-16T17:06:27,020 adding 'sequana/resources/testing/summary_coverage2.json' 2021-07-16T17:06:27,022 adding 'sequana/resources/testing/summary_kraken.json' 2021-07-16T17:06:27,024 adding 'sequana/resources/testing/summary_pacbio_qc1.json' 2021-07-16T17:06:27,026 adding 'sequana/resources/testing/summary_pacbio_qc2.json' 2021-07-16T17:06:27,028 adding 'sequana/resources/testing/summary_pacbio_qc3.json' 2021-07-16T17:06:27,029 adding 'sequana/resources/testing/summary_qc.json' 2021-07-16T17:06:27,034 adding 'sequana/resources/testing/test.bam' 2021-07-16T17:06:27,042 adding 'sequana/resources/testing/test.fasta' 2021-07-16T17:06:27,044 adding 'sequana/resources/testing/test.fasta.fai' 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2021-07-16T17:06:27,344 adding 'sequana/resources/testing/test_gui_generic_snakefile_config.rules' 2021-07-16T17:06:27,345 adding 'sequana/resources/testing/test_gui_generic_snakefile_configfile.rules' 2021-07-16T17:06:27,347 adding 'sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules' 2021-07-16T17:06:27,348 adding 'sequana/resources/testing/test_heatmap.csv' 2021-07-16T17:06:27,349 adding 'sequana/resources/testing/test_index_mapper.csv' 2021-07-16T17:06:27,369 adding 'sequana/resources/testing/test_isoseq_lq_sirv.bam' 2021-07-16T17:06:27,372 adding 'sequana/resources/testing/test_itol_basic.tree.txt' 2021-07-16T17:06:27,383 adding 'sequana/resources/testing/test_kraken.out' 2021-07-16T17:06:27,385 adding 'sequana/resources/testing/test_kraken.out.summary' 2021-07-16T17:06:27,386 adding 'sequana/resources/testing/test_kraken_mkr2_summary_1.json' 2021-07-16T17:06:27,388 adding 'sequana/resources/testing/test_kraken_mkr2_summary_2.json' 2021-07-16T17:06:27,389 adding 'sequana/resources/testing/test_kraken_multiple_1.csv' 2021-07-16T17:06:27,390 adding 'sequana/resources/testing/test_kraken_multiple_2.csv' 2021-07-16T17:06:27,396 adding 'sequana/resources/testing/test_krona_k1.tsv' 2021-07-16T17:06:27,397 adding 'sequana/resources/testing/test_krona_k2.tsv' 2021-07-16T17:06:27,399 adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv' 2021-07-16T17:06:27,400 adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv' 2021-07-16T17:06:27,402 adding 'sequana/resources/testing/test_measles.bam' 2021-07-16T17:06:27,404 adding 'sequana/resources/testing/test_measles.cram' 2021-07-16T17:06:27,409 adding 'sequana/resources/testing/test_measles.sam' 2021-07-16T17:06:27,411 adding 'sequana/resources/testing/test_pacbio_barcode_report.csv' 2021-07-16T17:06:27,455 adding 'sequana/resources/testing/test_pacbio_subreads.bam' 2021-07-16T17:06:27,509 adding 'sequana/resources/testing/test_pca.csv' 2021-07-16T17:06:27,543 adding 'sequana/resources/testing/test_sirv.xls' 2021-07-16T17:06:27,547 adding 'sequana/resources/testing/test_snakemake_stats.txt' 2021-07-16T17:06:27,768 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2021-07-16T17:06:27,775 adding 'sequana/resources/testing/test_summary_fastq_stats.json' 2021-07-16T17:06:27,777 adding 'sequana/resources/testing/test_summary_module.svg' 2021-07-16T17:06:27,779 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2021-07-16T17:06:27,791 adding 'sequana/resources/testing/test_vcf_mpileup_4dot1.vcf' 2021-07-16T17:06:27,794 adding 'sequana/resources/testing/rnadiff/__init__.py' 2021-07-16T17:06:31,565 adding 'sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls' 2021-07-16T17:06:33,045 adding 'sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls' 2021-07-16T17:06:33,099 adding 'sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls' 2021-07-16T17:06:33,103 adding 'sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls' 2021-07-16T17:06:33,354 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls' 2021-07-16T17:06:33,559 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls' 2021-07-16T17:06:33,567 adding 'sequana/rules/README.rst' 2021-07-16T17:06:33,568 adding 'sequana/rules/__init__.py' 2021-07-16T17:06:33,570 adding 'sequana/rules/Adapters/__init__.py' 2021-07-16T17:06:33,571 adding 'sequana/rules/Adapters/adapter_removal/adapter_removal.rules' 2021-07-16T17:06:33,573 adding 'sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules' 2021-07-16T17:06:33,575 adding 'sequana/rules/Adapters/cutadapt/cutadapt.rules' 2021-07-16T17:06:33,577 adding 'sequana/rules/Adapters/identify_adapters/identify_adapters.rules' 2021-07-16T17:06:33,579 adding 'sequana/rules/Assembly/__init__.py' 2021-07-16T17:06:33,580 adding 'sequana/rules/Assembly/busco/busco.rules' 2021-07-16T17:06:33,582 adding 'sequana/rules/Assembly/busco_analysis/busco_analysis.rules' 2021-07-16T17:06:33,584 adding 'sequana/rules/Assembly/canu/canu.rules' 2021-07-16T17:06:33,586 adding 'sequana/rules/Assembly/spades/spades.rules' 2021-07-16T17:06:33,587 adding 'sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules' 2021-07-16T17:06:33,589 adding 'sequana/rules/DupRadar/DupRadar.rules' 2021-07-16T17:06:33,591 adding 'sequana/rules/Pacbio/__init__.py' 2021-07-16T17:06:33,593 adding 'sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules' 2021-07-16T17:06:33,595 adding 'sequana/rules/SARTools/SARTools.rules' 2021-07-16T17:06:33,596 adding 'sequana/rules/SnpEff/__init__.py' 2021-07-16T17:06:33,598 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2021-07-16T17:06:33,600 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2021-07-16T17:06:33,602 adding 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'sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules' 2021-07-16T17:06:33,624 adding 'sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules' 2021-07-16T17:06:33,625 adding 'sequana/rules/Variant_caller/__init__.py' 2021-07-16T17:06:33,627 adding 'sequana/rules/Variant_caller/freebayes/freebayes.rules' 2021-07-16T17:06:33,629 adding 'sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2021-07-16T17:06:33,631 adding 'sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2021-07-16T17:06:33,632 adding 'sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules' 2021-07-16T17:06:33,634 adding 'sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2021-07-16T17:06:33,636 adding 'sequana/rules/bam_analysis/bam_analysis.rules' 2021-07-16T17:06:33,638 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2021-07-16T17:06:33,639 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2021-07-16T17:06:33,641 adding 'sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules' 2021-07-16T17:06:33,643 adding 'sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules' 2021-07-16T17:06:33,645 adding 'sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules' 2021-07-16T17:06:33,646 adding 'sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules' 2021-07-16T17:06:33,648 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2021-07-16T17:06:33,650 adding 'sequana/rules/bwa_index/bwa_index.rules' 2021-07-16T17:06:33,652 adding 'sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules' 2021-07-16T17:06:33,654 adding 'sequana/rules/chipuanar/chipuanar.rules' 2021-07-16T17:06:33,655 adding 'sequana/rules/codecs/__init__.py' 2021-07-16T17:06:33,657 adding 'sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules' 2021-07-16T17:06:33,658 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2021-07-16T17:06:33,660 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2021-07-16T17:06:33,662 adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' 2021-07-16T17:06:33,664 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2021-07-16T17:06:33,665 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2021-07-16T17:06:33,667 adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' 2021-07-16T17:06:33,668 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2021-07-16T17:06:33,670 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2021-07-16T17:06:33,672 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2021-07-16T17:06:33,673 adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' 2021-07-16T17:06:33,675 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2021-07-16T17:06:33,676 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2021-07-16T17:06:33,678 adding 'sequana/rules/conda/conda.rules' 2021-07-16T17:06:33,680 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2021-07-16T17:06:33,682 adding 'sequana/rules/dag/dag.rules' 2021-07-16T17:06:33,683 adding 'sequana/rules/deeptools/__init__.py' 2021-07-16T17:06:33,685 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2021-07-16T17:06:33,686 adding 'sequana/rules/deeptools/bamCoverage/bamCoverage.rules' 2021-07-16T17:06:33,688 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2021-07-16T17:06:33,690 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2021-07-16T17:06:33,691 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2021-07-16T17:06:33,693 adding 'sequana/rules/digital_normalisation/digital_normalisation.rules' 2021-07-16T17:06:33,695 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2021-07-16T17:06:33,696 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2021-07-16T17:06:33,698 adding 'sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules' 2021-07-16T17:06:33,700 adding 'sequana/rules/fastqc_dynamic/fastqc_dynamic.rules' 2021-07-16T17:06:33,702 adding 'sequana/rules/feature_counts/feature_counts.rules' 2021-07-16T17:06:33,703 adding 'sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules' 2021-07-16T17:06:33,705 adding 'sequana/rules/format_contigs/format_contigs.rules' 2021-07-16T17:06:33,707 adding 'sequana/rules/idr/__init__.py' 2021-07-16T17:06:33,708 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2021-07-16T17:06:33,710 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2021-07-16T17:06:33,712 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2021-07-16T17:06:33,714 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2021-07-16T17:06:33,716 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2021-07-16T17:06:33,717 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 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'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2021-07-16T17:06:33,739 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2021-07-16T17:06:33,741 adding 'sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules' 2021-07-16T17:06:33,742 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2021-07-16T17:06:33,744 adding 'sequana/rules/preSARTools/preSARTools.rules' 2021-07-16T17:06:33,746 adding 'sequana/rules/prokka/prokka.rules' 2021-07-16T17:06:33,747 adding 'sequana/rules/quast/quast.rules' 2021-07-16T17:06:33,749 adding 'sequana/rules/remove_blacklist/remove_blacklist.rules' 2021-07-16T17:06:33,751 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2021-07-16T17:06:33,752 adding 'sequana/rules/rnaseqc2/rnaseqc2.rules' 2021-07-16T17:06:33,754 adding 'sequana/rules/rulegraph/rulegraph.rules' 2021-07-16T17:06:33,756 adding 'sequana/rules/salmon_index/salmon_index.rules' 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'sequana/scripts/summary.py' 2021-07-16T17:06:33,806 adding 'sequana/scripts/taxonomy.py' 2021-07-16T17:06:33,808 adding 'sequana/scripts/tools.py' 2021-07-16T17:06:33,810 adding 'sequana/scripts/vcf_filter.py' 2021-07-16T17:06:33,811 adding 'sequana/sphinxext/__init__.py' 2021-07-16T17:06:33,813 adding 'sequana/sphinxext/sequana_pipeline.py' 2021-07-16T17:06:33,814 adding 'sequana/sphinxext/snakemakerule.py' 2021-07-16T17:06:33,816 adding 'sequana/utils/__init__.py' 2021-07-16T17:06:33,817 adding 'sequana/utils/config.py' 2021-07-16T17:06:33,820 adding 'sequana/utils/datatables_js.py' 2021-07-16T17:06:33,821 adding 'sequana/utils/tree.py' 2021-07-16T17:06:33,823 adding 'sequana/viz/__init__.py' 2021-07-16T17:06:33,824 adding 'sequana/viz/anova.py' 2021-07-16T17:06:33,826 adding 'sequana/viz/boxplot.py' 2021-07-16T17:06:33,827 adding 'sequana/viz/clusterisation.py' 2021-07-16T17:06:33,829 adding 'sequana/viz/core.py' 2021-07-16T17:06:33,832 adding 'sequana/viz/corrplot.py' 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'sequana-0.9.0.dist-info/RECORD' 2021-07-16T17:06:34,151 removing build/bdist.linux-armv7l/wheel 2021-07-16T17:06:34,464 Building wheel for sequana (setup.py): finished with status 'done' 2021-07-16T17:06:34,729 Created wheel for sequana: filename=sequana-0.9.0-py3-none-any.whl size=21219542 sha256=dce821b312c886051cfa4bf729f17a5df801fa195ac861642bdf07e6c653f9de 2021-07-16T17:06:34,729 Stored in directory: /tmp/pip-ephem-wheel-cache-vwhp3act/wheels/fc/af/60/bd69bbc7c4669e99f141a21e6d9ec22179d8ec571d115ba288 2021-07-16T17:06:34,766 Successfully built sequana 2021-07-16T17:06:35,431 Removed build tracker: '/tmp/pip-req-tracker-0iwzzywf'