2021-07-19T02:38:08,385 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-07-19T02:38:08,996 Created temporary directory: /tmp/pip-ephem-wheel-cache-tbwglod2
2021-07-19T02:38:08,1000 Created temporary directory: /tmp/pip-req-tracker-8amgyp37
2021-07-19T02:38:09,001 Initialized build tracking at /tmp/pip-req-tracker-8amgyp37
2021-07-19T02:38:09,001 Created build tracker: /tmp/pip-req-tracker-8amgyp37
2021-07-19T02:38:09,001 Entered build tracker: /tmp/pip-req-tracker-8amgyp37
2021-07-19T02:38:09,003 Created temporary directory: /tmp/pip-wheel-n_wkodjj
2021-07-19T02:38:09,065 1 location(s) to search for versions of mgatk:
2021-07-19T02:38:09,065 * https://pypi.org/simple/mgatk/
2021-07-19T02:38:09,066 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2021-07-19T02:38:09,068 Getting page https://pypi.org/simple/mgatk/
2021-07-19T02:38:09,071 Found index url https://pypi.org/simple
2021-07-19T02:38:09,368   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2021-07-19T02:38:09,369   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2021-07-19T02:38:09,370   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2021-07-19T02:38:09,371   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2021-07-19T02:38:09,372   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2021-07-19T02:38:09,372   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2021-07-19T02:38:09,373   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2021-07-19T02:38:09,374   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2021-07-19T02:38:09,375   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2021-07-19T02:38:09,375   Found link https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 (from https://pypi.org/simple/mgatk/), version: 0.5.8
2021-07-19T02:38:09,376   Found link https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 (from https://pypi.org/simple/mgatk/), version: 0.5.9
2021-07-19T02:38:09,377   Found link https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220 (from https://pypi.org/simple/mgatk/), version: 0.6.0
2021-07-19T02:38:09,378   Found link https://files.pythonhosted.org/packages/20/57/9e2171535e864b06353f2ef16f9bcbc8308f92406c9909e65fe2a7aa39a6/mgatk-0.6.1.tar.gz#sha256=02621183dccb57d508a69d80182506bfd1716669a8808da49f02c78916d7d85a (from https://pypi.org/simple/mgatk/), version: 0.6.1
2021-07-19T02:38:09,379   Found link https://files.pythonhosted.org/packages/0c/20/8b326bdf214a7a05c0cf4f9469bb42ba3005cb3b749af130ff8d7a3dbef2/mgatk-0.6.2.tar.gz#sha256=1fff8a100fcf15f9fee42aadc352d4a12a9772269f08caceccfdfc395664f9fe (from https://pypi.org/simple/mgatk/), version: 0.6.2
2021-07-19T02:38:09,379   Found link https://files.pythonhosted.org/packages/c0/c5/7b13208a566f6860899245bf07beabfefa7af72c6abb7f2ef1afaa3b76fe/mgatk-0.6.3.tar.gz#sha256=0541f455d73dbb02ffa0f6062c5449a0833f35668565532378517b49d6552470 (from https://pypi.org/simple/mgatk/), version: 0.6.3
2021-07-19T02:38:09,410 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2021-07-19T02:38:09,438 Collecting mgatk==0.6.3
2021-07-19T02:38:09,441   Created temporary directory: /tmp/pip-unpack-wcrbwn6n
2021-07-19T02:38:10,476   Downloading mgatk-0.6.3.tar.gz (14.3 MB)
2021-07-19T02:38:14,309   Added mgatk==0.6.3 from https://files.pythonhosted.org/packages/c0/c5/7b13208a566f6860899245bf07beabfefa7af72c6abb7f2ef1afaa3b76fe/mgatk-0.6.3.tar.gz#sha256=0541f455d73dbb02ffa0f6062c5449a0833f35668565532378517b49d6552470 to build tracker '/tmp/pip-req-tracker-8amgyp37'
2021-07-19T02:38:14,311     Running setup.py (path:/tmp/pip-wheel-n_wkodjj/mgatk_fabf1ba357464cd7bc9350029d100dc5/setup.py) egg_info for package mgatk
2021-07-19T02:38:14,313     Created temporary directory: /tmp/pip-pip-egg-info-u7w9sjpa
2021-07-19T02:38:14,313     Running command python setup.py egg_info
2021-07-19T02:38:16,281     running egg_info
2021-07-19T02:38:16,286     creating /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info
2021-07-19T02:38:16,288     writing entry points to /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/entry_points.txt
2021-07-19T02:38:16,291     writing requirements to /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/requires.txt
2021-07-19T02:38:16,292     writing dependency_links to /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/dependency_links.txt
2021-07-19T02:38:16,294     writing /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/PKG-INFO
2021-07-19T02:38:16,298     writing top-level names to /tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/top_level.txt
2021-07-19T02:38:16,301     writing manifest file '/tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/SOURCES.txt'
2021-07-19T02:38:16,606     reading manifest file '/tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/SOURCES.txt'
2021-07-19T02:38:16,608     reading manifest template 'MANIFEST.in'
2021-07-19T02:38:16,610     no previously-included directories found matching 'mgatk.egg-info/'
2021-07-19T02:38:16,611     no previously-included directories found matching 'tests/'
2021-07-19T02:38:16,612     no previously-included directories found matching '*.DS_Store'
2021-07-19T02:38:16,678     writing manifest file '/tmp/pip-pip-egg-info-u7w9sjpa/mgatk.egg-info/SOURCES.txt'
2021-07-19T02:38:16,800   Source in /tmp/pip-wheel-n_wkodjj/mgatk_fabf1ba357464cd7bc9350029d100dc5 has version 0.6.3, which satisfies requirement mgatk==0.6.3 from https://files.pythonhosted.org/packages/c0/c5/7b13208a566f6860899245bf07beabfefa7af72c6abb7f2ef1afaa3b76fe/mgatk-0.6.3.tar.gz#sha256=0541f455d73dbb02ffa0f6062c5449a0833f35668565532378517b49d6552470
2021-07-19T02:38:16,801   Removed mgatk==0.6.3 from https://files.pythonhosted.org/packages/c0/c5/7b13208a566f6860899245bf07beabfefa7af72c6abb7f2ef1afaa3b76fe/mgatk-0.6.3.tar.gz#sha256=0541f455d73dbb02ffa0f6062c5449a0833f35668565532378517b49d6552470 from build tracker '/tmp/pip-req-tracker-8amgyp37'
2021-07-19T02:38:16,809 Created temporary directory: /tmp/pip-unpack-vum6b3hp
2021-07-19T02:38:16,810 Building wheels for collected packages: mgatk
2021-07-19T02:38:16,817   Created temporary directory: /tmp/pip-wheel-8xbq6fby
2021-07-19T02:38:16,818   Building wheel for mgatk (setup.py): started
2021-07-19T02:38:16,819   Destination directory: /tmp/pip-wheel-8xbq6fby
2021-07-19T02:38:16,819   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n_wkodjj/mgatk_fabf1ba357464cd7bc9350029d100dc5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n_wkodjj/mgatk_fabf1ba357464cd7bc9350029d100dc5/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8xbq6fby
2021-07-19T02:38:18,842   running bdist_wheel
2021-07-19T02:38:18,857   running build
2021-07-19T02:38:18,858   running build_py
2021-07-19T02:38:19,152   creating build
2021-07-19T02:38:19,153   creating build/lib
2021-07-19T02:38:19,155   creating build/lib/mgatk
2021-07-19T02:38:19,157   copying mgatk/__init__.py -> build/lib/mgatk
2021-07-19T02:38:19,162   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2021-07-19T02:38:19,166   copying mgatk/cli.py -> build/lib/mgatk
2021-07-19T02:38:19,171   running egg_info
2021-07-19T02:38:19,198   writing dependency_links to mgatk.egg-info/dependency_links.txt
2021-07-19T02:38:19,201   writing entry points to mgatk.egg-info/entry_points.txt
2021-07-19T02:38:19,203   writing requirements to mgatk.egg-info/requires.txt
2021-07-19T02:38:19,206   writing mgatk.egg-info/PKG-INFO
2021-07-19T02:38:19,211   writing top-level names to mgatk.egg-info/top_level.txt
2021-07-19T02:38:19,220   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2021-07-19T02:38:19,226   reading manifest template 'MANIFEST.in'
2021-07-19T02:38:19,230   no previously-included directories found matching 'tests/'
2021-07-19T02:38:19,232   no previously-included directories found matching '*.DS_Store'
2021-07-19T02:38:19,290   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2021-07-19T02:38:19,305   copying mgatk/.DS_Store -> build/lib/mgatk
2021-07-19T02:38:19,311   copying mgatk/devnotes.md -> build/lib/mgatk
2021-07-19T02:38:19,315   creating build/lib/mgatk/__pycache__
2021-07-19T02:38:19,318   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,322   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,326   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,331   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,336   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,340   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-07-19T02:38:19,346   creating build/lib/mgatk/bin
2021-07-19T02:38:19,348   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2021-07-19T02:38:19,355   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2021-07-19T02:38:20,032   creating build/lib/mgatk/bin/R
2021-07-19T02:38:20,034   copying mgatk/bin/R/convert_cellbender_output.R -> build/lib/mgatk/bin/R
2021-07-19T02:38:20,041   copying mgatk/bin/R/prepare_cellbender.R -> build/lib/mgatk/bin/R
2021-07-19T02:38:20,048   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2021-07-19T02:38:20,053   creating build/lib/mgatk/bin/anno
2021-07-19T02:38:20,054   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2021-07-19T02:38:20,059   creating build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,060   copying mgatk/bin/anno/fasta/.DS_Store -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,064   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,068   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,075   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,081   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,088   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,095   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,101   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,108   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,113   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,118   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,122   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2021-07-19T02:38:20,126   creating build/lib/mgatk/bin/python
2021-07-19T02:38:20,127   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,131   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,136   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,142   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,147   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,152   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,157   copying mgatk/bin/python/sumstatsBP_overlap.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,160   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,164   copying mgatk/bin/python/sumstatsBPtenx_overlap.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,168   copying mgatk/bin/python/variant_calling.py -> build/lib/mgatk/bin/python
2021-07-19T02:38:20,171   creating build/lib/mgatk/bin/snake
2021-07-19T02:38:20,173   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2021-07-19T02:38:20,176   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2021-07-19T02:38:20,180   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2021-07-19T02:38:20,183   creating build/lib/mgatk/del
2021-07-19T02:38:20,185   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2021-07-19T02:38:20,189   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2021-07-19T02:38:20,193   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2021-07-19T02:38:20,198   creating build/lib/mgatk/del/__pycache__
2021-07-19T02:38:20,200   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-07-19T02:38:20,207   copying mgatk/del/__pycache__/clidel.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2021-07-19T02:38:20,214   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-07-19T02:38:20,221   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2021-07-19T02:38:20,227   creating build/lib/mgatk/del/bulk_del
2021-07-19T02:38:20,229   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2021-07-19T02:38:20,235   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2021-07-19T02:38:20,239   creating build/lib/mgatk/del/singles_del
2021-07-19T02:38:20,240   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2021-07-19T02:38:20,244   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2021-07-19T02:38:20,248   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2021-07-19T02:38:20,259   installing to build/bdist.linux-armv7l/wheel
2021-07-19T02:38:20,260   running install
2021-07-19T02:38:20,262   running install_lib
2021-07-19T02:38:20,269   creating build/bdist.linux-armv7l
2021-07-19T02:38:20,270   creating build/bdist.linux-armv7l/wheel
2021-07-19T02:38:20,273   creating build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:20,275   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:20,279   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:20,283   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:20,288   creating build/bdist.linux-armv7l/wheel/mgatk/del
2021-07-19T02:38:20,289   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-07-19T02:38:20,294   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-07-19T02:38:20,296   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-07-19T02:38:20,302   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-07-19T02:38:20,310   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-07-19T02:38:20,312   copying build/lib/mgatk/del/__pycache__/clidel.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-07-19T02:38:20,317   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-07-19T02:38:20,320   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-07-19T02:38:20,323   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-07-19T02:38:20,327   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-07-19T02:38:20,328   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-07-19T02:38:20,332   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-07-19T02:38:20,335   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-07-19T02:38:20,338   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-07-19T02:38:20,341   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-07-19T02:38:20,345   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,347   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,350   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,354   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,357   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,361   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,365   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-07-19T02:38:20,368   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:20,372   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2021-07-19T02:38:20,374   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-07-19T02:38:20,376   copying build/lib/mgatk/bin/R/prepare_cellbender.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-07-19T02:38:20,380   copying build/lib/mgatk/bin/R/convert_cellbender_output.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-07-19T02:38:20,383   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-07-19T02:38:20,387   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-07-19T02:38:21,052   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-07-19T02:38:21,057   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-07-19T02:38:21,059   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,061   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,067   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,072   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,078   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,084   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,091   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,095   copying build/lib/mgatk/bin/anno/fasta/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,099   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,103   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,107   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,111   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,117   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-07-19T02:38:21,123   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-07-19T02:38:21,131   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,133   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,136   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,140   copying build/lib/mgatk/bin/python/variant_calling.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,143   copying build/lib/mgatk/bin/python/sumstatsBP_overlap.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,147   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,150   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,156   copying build/lib/mgatk/bin/python/sumstatsBPtenx_overlap.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,161   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,166   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,171   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-07-19T02:38:21,176   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-07-19T02:38:21,177   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-07-19T02:38:21,181   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-07-19T02:38:21,184   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-07-19T02:38:21,188   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2021-07-19T02:38:21,190   running install_egg_info
2021-07-19T02:38:21,216   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.6.3-py3.5.egg-info
2021-07-19T02:38:21,247   running install_scripts
2021-07-19T02:38:21,425   creating build/bdist.linux-armv7l/wheel/mgatk-0.6.3.dist-info/WHEEL
2021-07-19T02:38:25,100   Building wheel for mgatk (setup.py): finished with status 'done'
2021-07-19T02:38:25,306   Created wheel for mgatk: filename=mgatk-0.6.3-py2.py3-none-any.whl size=14356694 sha256=360fb6d8cb87a3d76ecd2ac7a4b94e1f13cdcd515050c8926af8309672d0c0d2
2021-07-19T02:38:25,307   Stored in directory: /tmp/pip-ephem-wheel-cache-tbwglod2/wheels/1a/05/64/6b93f860a71e97021de4aa9a0bbf60ed08b782998007d0c611
2021-07-19T02:38:25,331 Successfully built mgatk
2021-07-19T02:38:29,361 Removed build tracker: '/tmp/pip-req-tracker-8amgyp37'