2021-07-20T06:25:28,875 Created temporary directory: /tmp/pip-ephem-wheel-cache-2pkzu55a 2021-07-20T06:25:28,880 Created temporary directory: /tmp/pip-req-tracker-q9280w99 2021-07-20T06:25:28,880 Initialized build tracking at /tmp/pip-req-tracker-q9280w99 2021-07-20T06:25:28,881 Created build tracker: /tmp/pip-req-tracker-q9280w99 2021-07-20T06:25:28,881 Entered build tracker: /tmp/pip-req-tracker-q9280w99 2021-07-20T06:25:28,884 Created temporary directory: /tmp/pip-wheel-fjtz2wp8 2021-07-20T06:25:28,954 1 location(s) to search for versions of megalodon: 2021-07-20T06:25:28,954 * https://pypi.org/simple/megalodon/ 2021-07-20T06:25:28,955 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/ 2021-07-20T06:25:28,956 Getting page https://pypi.org/simple/megalodon/ 2021-07-20T06:25:28,958 Found index url https://pypi.org/simple 2021-07-20T06:25:29,131 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,132 Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0 2021-07-20T06:25:29,132 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,133 Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0 2021-07-20T06:25:29,134 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,134 Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0 2021-07-20T06:25:29,135 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,136 Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0 2021-07-20T06:25:29,136 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,137 Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1 2021-07-20T06:25:29,138 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0d097cc1fef40f8687647b5b2762567b845af016da396720bdd831e205ee8a17 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,138 Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b (from https://pypi.org/simple/megalodon/), version: 2.2.2 2021-07-20T06:25:29,139 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/45/a6/2823df05db649df59c68dd45cf096fbfbfc329ef1d0f7ebec4f8d9f22aba/megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=5d0a7ac3aa6682e765b65ccf21287f19adb13136c5bbf1df2261d3977ae8477d (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,140 Found link https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 (from https://pypi.org/simple/megalodon/), version: 2.2.3 2021-07-20T06:25:29,141 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/68/ae/04258dc7767930aa202d1bde4b85ab85d7198e309aeac9dd87022622feb2/megalodon-2.2.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bc8f2941db875a09c831c8f9430fbef8192827ace981eb64f7dd28d3a9ee6351 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,141 Found link https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c (from https://pypi.org/simple/megalodon/), version: 2.2.4 2021-07-20T06:25:29,142 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/19/dd/f9468b176d7205983acd0815d8e5c8c261befeac8ada2b56b1ecb993bb68/megalodon-2.2.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d5997afe79945d93c64b6d7c9e43abec8e8ea6855b46d9310e591d6b80c1a1b4 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,143 Found link https://files.pythonhosted.org/packages/16/ae/a874438ab41e90ab0cef6dd27dacfdafde85d1e53919d16a6cf7179db5a0/megalodon-2.2.5.tar.gz#sha256=2e1d518defaabc15a1e95ace2738823cee1d6394066b4208527bb4d75bcf624a (from https://pypi.org/simple/megalodon/), version: 2.2.5 2021-07-20T06:25:29,143 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/a5/62/9b0b3ea25b343f382552662ebfe57635b614f8a2377ffd5023c211936cc1/megalodon-2.2.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b6c509cd7e3cdf1577a133d1341b21be7ca2532da296b4be037c430f99244357 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,144 Found link https://files.pythonhosted.org/packages/e5/b2/d811ca419757cbba76ddc27bfa2d6737697ff84154452b854ed45bff00cd/megalodon-2.2.6.tar.gz#sha256=771c3a3c75ed77e5ff992ee351d7ae1b9098a9f9b0d5fd802a0dc3a917ebc309 (from https://pypi.org/simple/megalodon/), version: 2.2.6 2021-07-20T06:25:29,145 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/c9/b4/f5d093c9af006cf796dabdbc11c1e35d948f0614ded7d2287c59edf176f5/megalodon-2.2.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=39e7f53cf7edc33b9db185ad25d710fbb146f376c9b2a18e040532f3eabf6d22 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,145 Found link https://files.pythonhosted.org/packages/8f/3a/0dddaefaafd13b422c47b29b6eb8244e063cf1913a6c93bb266f81ba28b0/megalodon-2.2.7.tar.gz#sha256=1b94f36b0832e46a357fdeaa1dd69ba8fcc12db323fec92fc82099bec561e953 (from https://pypi.org/simple/megalodon/), version: 2.2.7 2021-07-20T06:25:29,146 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/1c/e2/aac960ece82b3ee2d1bf508bbad89b0322df7ee93867bff61eb08eea7d02/megalodon-2.2.8-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=4476551ac0b3e26f30ffc672b968364a20c70ddcde7aaecf1c35b774c0cb89f8 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,147 Found link https://files.pythonhosted.org/packages/96/ff/fbca07072116bded97faa95b3e612e51699f0f2b0f6bf3f8ceb4d517eb13/megalodon-2.2.8.tar.gz#sha256=19c1cfe3b538f426f7f0a3174350ab9670e7c6e9b7ed2a2567123663349300b1 (from https://pypi.org/simple/megalodon/), version: 2.2.8 2021-07-20T06:25:29,147 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/54/36/c04e7bca80b2e6c219622a5ac59624929bdf393917c6b22afb0b20cab5a2/megalodon-2.2.9-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2f0d2ec73f279389f8fe9e24996760d63bebdff2911ea1cb478bbd80980ff5f6 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,148 Found link https://files.pythonhosted.org/packages/32/34/06e3789e13ba3a53aee81ad3c8cb68b1e9356530af8525ca0f68869d02eb/megalodon-2.2.9.tar.gz#sha256=355f8e110d34ce615a5a65cdca76b92e44acd6de80ea329c557c966a041a3dcd (from https://pypi.org/simple/megalodon/), version: 2.2.9 2021-07-20T06:25:29,149 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/85/e8/e90f759e0e17e18731d7c22fbf238b09662d54629b9736ff92f98975a6a1/megalodon-2.2.10-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=617674a9a6151b1fa74921f827578105fe8c9df9d8d9c538e244db2849a689da (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,149 Found link https://files.pythonhosted.org/packages/c4/f8/97ed0590b57f2105b63c9141901cc9488fd94d4d0550cf316d9737092701/megalodon-2.2.10.tar.gz#sha256=2b4bbfaec07fed5e6f6083025a34b60d65cdb39ed92d05a5ef9454b8a9e428d5 (from https://pypi.org/simple/megalodon/), version: 2.2.10 2021-07-20T06:25:29,150 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/af/89/c690ee45ac097048cc7738902b9d633c469948e15d2091f203e504183c69/megalodon-2.3.0-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=a996c71f4001995029fd562c27478ded119712869d1a16643482e5d34b2b6c2b (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,151 Found link https://files.pythonhosted.org/packages/a3/ac/c085b61208e30364a2d5aa52bdb9fe26b2e71331384ea510043df6c93db2/megalodon-2.3.0.tar.gz#sha256=aabd59e6a62c15d78438a8ba2b9ad87baa4a675a11c88e6da327fc0412472c97 (from https://pypi.org/simple/megalodon/), version: 2.3.0 2021-07-20T06:25:29,151 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/89/ca/b8b717f61b34ea09ed4a19b0ba7c088f44efbd84c3e6d4ee04797e98022b/megalodon-2.3.1-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=766658f797630a8dbc4c2a41aebd017fcf736b46b078d83ad062d85d09bc13ed (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,152 Found link https://files.pythonhosted.org/packages/a2/b9/4730d767af8173b026270f434ac0faac38cc527e85218736e83b39ff9b3a/megalodon-2.3.1.tar.gz#sha256=db878b0221d48c95a3f661b749eaf883e750c51c000898f86fdcccce26e7f314 (from https://pypi.org/simple/megalodon/), version: 2.3.1 2021-07-20T06:25:29,153 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/6e/a9/dade983077875bca37f2558709482ec2638f0e236bf450d1355a852506e6/megalodon-2.3.2-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=1db76329f8e023d8136c3e4bff446e4c64d53c290cae93d8ddc773fe3ed50b22 (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,153 Found link https://files.pythonhosted.org/packages/35/ae/d788181d8ad6d23022ad17ef333ba0ae1f29c91aed2fe4988806d9e58cab/megalodon-2.3.2.tar.gz#sha256=9db393af4a91998eaf56b67dffa7664c556259e3b4cc7c469d667769ad8590aa (from https://pypi.org/simple/megalodon/), version: 2.3.2 2021-07-20T06:25:29,154 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/cf/b2/456dd3c337f80c9f55d276df727f4c95ec13de7f7ef2b72a69f6889c033d/megalodon-2.3.3-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=512a2a34e3a0e5e55419c98c11c4ecabeb3b2fcc56f9b3c89581ffbde2c1bc1a (from https://pypi.org/simple/megalodon/) 2021-07-20T06:25:29,155 Found link https://files.pythonhosted.org/packages/2f/c2/3466feebb701a2aa549833f13a1d4061d87ebaddaec55c2be9bb09ccf2f1/megalodon-2.3.3.tar.gz#sha256=aa463d72829f49506c2b2d2c5700ea57d382d8e7d9840590dbfbc3771b754e66 (from https://pypi.org/simple/megalodon/), version: 2.3.3 2021-07-20T06:25:29,156 Skipping link: No binaries permitted for megalodon: https://files.pythonhosted.org/packages/85/31/eda4a2777fd88cd41f1492bc0972f887bebfa40d1cd8e38a881b14187830/megalodon-2.3.4-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=3cf03db999eab0ccf58ffb1d4f87ec60ac7cf07e5a8ad8d7adceedad8f201beb (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6) 2021-07-20T06:25:29,157 Found link https://files.pythonhosted.org/packages/eb/ff/dbaac26e1b426af272ff2e5938c7d56754160450530b39f6b7cda83a8b29/megalodon-2.3.4.tar.gz#sha256=d1b3ed894483fd14d7d02dfdf8c7da9a66e8571b10ccf5b78ae0b0c0d1c077bb (from https://pypi.org/simple/megalodon/) (requires-python:>=3.6), version: 2.3.4 2021-07-20T06:25:29,158 Skipping link: not a file: https://pypi.org/simple/megalodon/ 2021-07-20T06:25:29,195 Given no hashes to check 1 links for project 'megalodon': discarding no candidates 2021-07-20T06:25:29,229 Collecting megalodon==2.2.4 2021-07-20T06:25:29,233 Created temporary directory: /tmp/pip-unpack-tfg7hbdi 2021-07-20T06:25:30,223 Downloading megalodon-2.2.4.tar.gz (7.8 MB) 2021-07-20T06:25:33,116 Added megalodon==2.2.4 from https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c to build tracker '/tmp/pip-req-tracker-q9280w99' 2021-07-20T06:25:33,117 Running setup.py (path:/tmp/pip-wheel-fjtz2wp8/megalodon_31730dc4a0d04ca39eb632a207c07d7a/setup.py) egg_info for package megalodon 2021-07-20T06:25:33,118 Created temporary directory: /tmp/pip-pip-egg-info-o0kdfe7o 2021-07-20T06:25:33,119 Running command python setup.py egg_info 2021-07-20T06:25:35,013 running egg_info 2021-07-20T06:25:35,018 creating /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info 2021-07-20T06:25:35,020 writing /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/PKG-INFO 2021-07-20T06:25:35,026 writing dependency_links to /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/dependency_links.txt 2021-07-20T06:25:35,029 writing entry points to /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/entry_points.txt 2021-07-20T06:25:35,032 writing requirements to /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/requires.txt 2021-07-20T06:25:35,034 writing top-level names to /tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/top_level.txt 2021-07-20T06:25:35,037 writing manifest file '/tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/SOURCES.txt' 2021-07-20T06:25:35,628 reading manifest file '/tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/SOURCES.txt' 2021-07-20T06:25:35,631 reading manifest template 'MANIFEST.in' 2021-07-20T06:25:35,633 adding license file 'LICENCE.txt' 2021-07-20T06:25:35,640 writing manifest file '/tmp/pip-pip-egg-info-o0kdfe7o/megalodon.egg-info/SOURCES.txt' 2021-07-20T06:25:35,794 Source in /tmp/pip-wheel-fjtz2wp8/megalodon_31730dc4a0d04ca39eb632a207c07d7a has version 2.2.4, which satisfies requirement megalodon==2.2.4 from https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c 2021-07-20T06:25:35,796 Removed megalodon==2.2.4 from https://files.pythonhosted.org/packages/f2/1a/4cbec97bcedb05c100398b752bccc14078a7bb7d72e4c3dd9adf96280818/megalodon-2.2.4.tar.gz#sha256=a882b2a388c82fdcc150de46f9dc10d5253afe7e44e419896ac1c5783b50531c from build tracker '/tmp/pip-req-tracker-q9280w99' 2021-07-20T06:25:35,828 Created temporary directory: /tmp/pip-unpack-m93w2l81 2021-07-20T06:25:35,829 Building wheels for collected packages: megalodon 2021-07-20T06:25:35,836 Created temporary directory: /tmp/pip-wheel-ci94cyc1 2021-07-20T06:25:35,836 Building wheel for megalodon (setup.py): started 2021-07-20T06:25:35,837 Destination directory: /tmp/pip-wheel-ci94cyc1 2021-07-20T06:25:35,838 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fjtz2wp8/megalodon_31730dc4a0d04ca39eb632a207c07d7a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fjtz2wp8/megalodon_31730dc4a0d04ca39eb632a207c07d7a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ci94cyc1 2021-07-20T06:25:37,913 running bdist_wheel 2021-07-20T06:25:38,220 running build 2021-07-20T06:25:38,221 running build_py 2021-07-20T06:25:38,537 creating build 2021-07-20T06:25:38,538 creating build/lib.linux-armv7l-3.9 2021-07-20T06:25:38,539 creating build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,541 copying megalodon/__init__.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,543 copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,559 copying megalodon/_version.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,562 copying megalodon/__main__.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,567 copying megalodon/mapping.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,572 copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,575 copying megalodon/calibration.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,580 copying megalodon/logging.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,583 copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,589 copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,599 copying megalodon/mods.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,611 copying megalodon/variants.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,623 copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,632 copying megalodon/backends.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,641 copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.9/megalodon 2021-07-20T06:25:38,652 creating build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,654 copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,658 copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,661 copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,668 copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,678 copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,682 copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,686 copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,690 copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,693 copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,697 copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,700 copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,704 copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,707 copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,712 copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,716 copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,719 copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,723 copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,726 copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,729 copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,733 copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,736 copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,740 copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,744 copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,764 copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,768 copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,772 copying megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,776 copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,780 copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,785 copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,789 copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.9/megalodon_extras 2021-07-20T06:25:38,844 creating build/lib.linux-armv7l-3.9/megalodon/model_data 2021-07-20T06:25:38,846 creating build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,848 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,858 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,863 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,868 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,892 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:25:38,894 copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:25:38,902 copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:25:38,926 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:25:38,927 copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:25:38,943 copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:25:38,971 creating build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,973 copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,983 copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,988 copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:38,993 copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:25:39,022 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:25:39,024 copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:25:39,034 copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:25:39,066 creating build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:25:39,068 copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:25:39,078 copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:25:39,095 copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:25:39,103 copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:25:39,130 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:25:39,132 copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:25:39,142 copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:25:39,172 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:25:39,174 copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:25:39,184 copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:25:39,219 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:25:39,220 copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:25:39,230 copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:25:39,254 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:25:39,255 copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:25:39,264 copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:25:39,291 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:25:39,293 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:25:39,302 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:25:39,310 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:25:39,319 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:25:39,346 creating build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:25:39,348 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:25:39,357 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:25:39,365 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:25:39,374 copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:25:39,399 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:25:39,401 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:25:39,412 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:25:39,419 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:25:39,430 copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:25:39,464 creating build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:25:39,466 copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:25:39,477 copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:25:39,528 running build_ext 2021-07-20T06:25:39,537 cythoning megalodon/_decode.pyx to megalodon/_decode.c 2021-07-20T06:25:46,004 building 'megalodon.decode' extension 2021-07-20T06:25:46,005 creating build/temp.linux-armv7l-3.9 2021-07-20T06:25:46,006 creating build/temp.linux-armv7l-3.9/megalodon 2021-07-20T06:25:46,007 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c megalodon/_decode.c -o build/temp.linux-armv7l-3.9/megalodon/_decode.o -std=c99 2021-07-20T06:25:46,609 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-20T06:25:46,610 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-20T06:25:46,610 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-20T06:25:46,610 from megalodon/_decode.c:622: 2021-07-20T06:25:46,611 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-20T06:25:46,611 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-20T06:25:46,611 | ^~~~~~~ 2021-07-20T06:26:04,088 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/megalodon/_decode.o -o build/lib.linux-armv7l-3.9/megalodon/decode.cpython-39-arm-linux-gnueabihf.so 2021-07-20T06:26:04,548 installing to build/bdist.linux-armv7l/wheel 2021-07-20T06:26:04,548 running install 2021-07-20T06:26:04,550 running install_lib 2021-07-20T06:26:04,568 creating build/bdist.linux-armv7l 2021-07-20T06:26:04,568 creating build/bdist.linux-armv7l/wheel 2021-07-20T06:26:04,571 creating build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,573 copying build/lib.linux-armv7l-3.9/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,576 copying build/lib.linux-armv7l-3.9/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,581 copying build/lib.linux-armv7l-3.9/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,585 copying build/lib.linux-armv7l-3.9/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,589 copying build/lib.linux-armv7l-3.9/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,593 copying build/lib.linux-armv7l-3.9/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,598 copying build/lib.linux-armv7l-3.9/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,602 copying build/lib.linux-armv7l-3.9/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,605 copying build/lib.linux-armv7l-3.9/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,610 copying build/lib.linux-armv7l-3.9/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:04,621 creating build/bdist.linux-armv7l/wheel/megalodon/model_data 2021-07-20T06:26:04,623 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,625 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,635 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,643 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,648 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,724 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:26:04,724 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:26:04,728 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg 2021-07-20T06:26:04,770 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:26:04,772 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:26:04,781 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg 2021-07-20T06:26:04,809 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,811 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,818 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,823 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,828 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg 2021-07-20T06:26:04,851 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:26:04,852 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:26:04,862 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg 2021-07-20T06:26:04,888 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:26:04,889 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:26:04,898 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:26:04,903 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:26:04,907 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg 2021-07-20T06:26:04,934 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:26:04,936 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:26:04,948 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg 2021-07-20T06:26:05,010 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:26:05,011 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:26:05,026 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg 2021-07-20T06:26:05,094 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:26:05,095 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:26:05,111 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg 2021-07-20T06:26:05,180 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:26:05,181 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:26:05,197 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg 2021-07-20T06:26:05,252 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:26:05,253 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:26:05,266 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:26:05,275 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:26:05,289 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg 2021-07-20T06:26:05,366 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:26:05,368 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:26:05,377 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:26:05,383 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:26:05,392 copying build/lib.linux-armv7l-3.9/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg 2021-07-20T06:26:05,451 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:26:05,452 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:26:05,471 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:26:05,479 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:26:05,495 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg 2021-07-20T06:26:05,546 creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:26:05,547 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:26:05,556 copying build/lib.linux-armv7l-3.9/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg 2021-07-20T06:26:05,583 copying build/lib.linux-armv7l-3.9/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,588 copying build/lib.linux-armv7l-3.9/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,593 copying build/lib.linux-armv7l-3.9/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,597 copying build/lib.linux-armv7l-3.9/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,601 copying build/lib.linux-armv7l-3.9/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,604 copying build/lib.linux-armv7l-3.9/megalodon/decode.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon 2021-07-20T06:26:05,622 creating build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,623 copying build/lib.linux-armv7l-3.9/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,626 copying build/lib.linux-armv7l-3.9/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,628 copying build/lib.linux-armv7l-3.9/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,632 copying build/lib.linux-armv7l-3.9/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,635 copying build/lib.linux-armv7l-3.9/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,638 copying build/lib.linux-armv7l-3.9/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,642 copying build/lib.linux-armv7l-3.9/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,646 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,648 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,651 copying build/lib.linux-armv7l-3.9/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,655 copying build/lib.linux-armv7l-3.9/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,658 copying build/lib.linux-armv7l-3.9/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,661 copying build/lib.linux-armv7l-3.9/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,665 copying build/lib.linux-armv7l-3.9/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,669 copying build/lib.linux-armv7l-3.9/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,672 copying build/lib.linux-armv7l-3.9/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,676 copying build/lib.linux-armv7l-3.9/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,679 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,682 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,686 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,689 copying build/lib.linux-armv7l-3.9/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,692 copying build/lib.linux-armv7l-3.9/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,695 copying build/lib.linux-armv7l-3.9/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,699 copying build/lib.linux-armv7l-3.9/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,702 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,705 copying build/lib.linux-armv7l-3.9/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,709 copying build/lib.linux-armv7l-3.9/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,712 copying build/lib.linux-armv7l-3.9/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,717 copying build/lib.linux-armv7l-3.9/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,720 copying build/lib.linux-armv7l-3.9/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras 2021-07-20T06:26:05,723 running install_egg_info 2021-07-20T06:26:05,779 running egg_info 2021-07-20T06:26:05,780 writing megalodon.egg-info/PKG-INFO 2021-07-20T06:26:05,787 writing dependency_links to megalodon.egg-info/dependency_links.txt 2021-07-20T06:26:05,794 writing entry points to megalodon.egg-info/entry_points.txt 2021-07-20T06:26:05,798 writing requirements to megalodon.egg-info/requires.txt 2021-07-20T06:26:05,801 writing top-level names to megalodon.egg-info/top_level.txt 2021-07-20T06:26:05,843 reading manifest file 'megalodon.egg-info/SOURCES.txt' 2021-07-20T06:26:05,848 reading manifest template 'MANIFEST.in' 2021-07-20T06:26:05,850 adding license file 'LICENCE.txt' 2021-07-20T06:26:05,858 writing manifest file 'megalodon.egg-info/SOURCES.txt' 2021-07-20T06:26:05,880 Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.4-py3.9.egg-info 2021-07-20T06:26:05,922 running install_scripts 2021-07-20T06:26:06,003 adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*") 2021-07-20T06:26:06,012 creating build/bdist.linux-armv7l/wheel/megalodon-2.2.4.dist-info/WHEEL 2021-07-20T06:26:06,026 creating '/tmp/pip-wheel-ci94cyc1/megalodon-2.2.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-20T06:26:06,030 adding 'megalodon/__init__.py' 2021-07-20T06:26:06,034 adding 'megalodon/__main__.py' 2021-07-20T06:26:06,045 adding 'megalodon/_version.py' 2021-07-20T06:26:06,048 adding 'megalodon/aggregate.py' 2021-07-20T06:26:06,055 adding 'megalodon/backends.py' 2021-07-20T06:26:06,077 adding 'megalodon/calibration.py' 2021-07-20T06:26:06,231 adding 'megalodon/decode.cpython-39-arm-linux-gnueabihf.so' 2021-07-20T06:26:06,239 adding 'megalodon/fast5_io.py' 2021-07-20T06:26:06,241 adding 'megalodon/logging.py' 2021-07-20T06:26:06,244 adding 'megalodon/mapping.py' 2021-07-20T06:26:06,253 adding 'megalodon/megalodon.py' 2021-07-20T06:26:06,258 adding 'megalodon/megalodon_helper.py' 2021-07-20T06:26:06,260 adding 'megalodon/megalodon_multiprocessing.py' 2021-07-20T06:26:06,284 adding 'megalodon/mods.py' 2021-07-20T06:26:06,287 adding 'megalodon/signal_mapping.py' 2021-07-20T06:26:06,300 adding 'megalodon/variants.py' 2021-07-20T06:26:06,376 adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:06,422 adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:06,482 adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:06,540 adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:06,655 adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:06,736 adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:06,854 adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:06,932 adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,013 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,049 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,126 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,162 adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,235 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,271 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,331 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,389 adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,425 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:07,490 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:07,577 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,617 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,631 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:07,701 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:07,794 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,834 adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,845 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:07,851 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:07,905 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:07,942 adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:07,955 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:07,982 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:08,046 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:08,081 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:08,090 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:08,104 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:08,198 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:08,264 adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:08,287 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz' 2021-07-20T06:26:08,297 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf' 2021-07-20T06:26:08,405 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.npz' 2021-07-20T06:26:08,471 adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_variant_calibration.pdf' 2021-07-20T06:26:08,488 adding 'megalodon_extras/__init__.py' 2021-07-20T06:26:08,491 adding 'megalodon_extras/__main__.py' 2021-07-20T06:26:08,496 adding 'megalodon_extras/_extras_parsers.py' 2021-07-20T06:26:08,516 adding 'megalodon_extras/aggregate_run.py' 2021-07-20T06:26:08,518 adding 'megalodon_extras/calibrate_generate_modified_base_stats.py' 2021-07-20T06:26:08,522 adding 'megalodon_extras/calibrate_generate_variant_stats.py' 2021-07-20T06:26:08,536 adding 'megalodon_extras/calibrate_merge_modified_bases.py' 2021-07-20T06:26:08,539 adding 'megalodon_extras/calibrate_modified_bases.py' 2021-07-20T06:26:08,541 adding 'megalodon_extras/calibrate_variants.py' 2021-07-20T06:26:08,545 adding 'megalodon_extras/merge_modified_bases.py' 2021-07-20T06:26:08,547 adding 'megalodon_extras/merge_variants.py' 2021-07-20T06:26:08,550 adding 'megalodon_extras/modified_bases_create_ground_truth.py' 2021-07-20T06:26:08,552 adding 'megalodon_extras/modified_bases_describe_alphabet.py' 2021-07-20T06:26:08,555 adding 'megalodon_extras/modified_bases_estimate_threshold.py' 2021-07-20T06:26:08,557 adding 'megalodon_extras/modified_bases_index_database.py' 2021-07-20T06:26:08,560 adding 'megalodon_extras/modified_bases_per_site_thresholds.py' 2021-07-20T06:26:08,562 adding 'megalodon_extras/modified_bases_split_by_motif.py' 2021-07-20T06:26:08,565 adding 'megalodon_extras/modified_bases_update_database.py' 2021-07-20T06:26:08,567 adding 'megalodon_extras/per_read_text_modified_bases.py' 2021-07-20T06:26:08,569 adding 'megalodon_extras/per_read_text_variants.py' 2021-07-20T06:26:08,571 adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py' 2021-07-20T06:26:08,574 adding 'megalodon_extras/phase_variants_merge_haploid_variants.py' 2021-07-20T06:26:08,577 adding 'megalodon_extras/phase_variants_whatshap_filter.py' 2021-07-20T06:26:08,580 adding 'megalodon_extras/validate_aggregated_modified_bases.py' 2021-07-20T06:26:08,582 adding 'megalodon_extras/validate_compare_modified_bases.py' 2021-07-20T06:26:08,586 adding 'megalodon_extras/validate_results.py' 2021-07-20T06:26:08,589 adding 'megalodon_extras/variants_atomize.py' 2021-07-20T06:26:08,592 adding 'megalodon_extras/variants_heterozygous_factor.py' 2021-07-20T06:26:08,594 adding 'megalodon_extras/variants_index_database.py' 2021-07-20T06:26:08,597 adding 'megalodon_extras/variants_resolve.py' 2021-07-20T06:26:08,601 adding 'megalodon-2.2.4.dist-info/LICENCE.txt' 2021-07-20T06:26:08,605 adding 'megalodon-2.2.4.dist-info/METADATA' 2021-07-20T06:26:08,607 adding 'megalodon-2.2.4.dist-info/WHEEL' 2021-07-20T06:26:08,609 adding 'megalodon-2.2.4.dist-info/entry_points.txt' 2021-07-20T06:26:08,611 adding 'megalodon-2.2.4.dist-info/top_level.txt' 2021-07-20T06:26:08,614 adding 'megalodon-2.2.4.dist-info/RECORD' 2021-07-20T06:26:08,758 removing build/bdist.linux-armv7l/wheel 2021-07-20T06:26:09,191 Building wheel for megalodon (setup.py): finished with status 'done' 2021-07-20T06:26:09,412 Created wheel for megalodon: filename=megalodon-2.2.4-cp39-cp39-linux_armv7l.whl size=8066491 sha256=575654c3d7135b37156174762ac47b8ba8d10ecf6ad629a459896e1c49bcbbee 2021-07-20T06:26:09,412 Stored in directory: /tmp/pip-ephem-wheel-cache-2pkzu55a/wheels/fd/77/bd/597f1d19392df2ad789e42b495ddbd52917aa4e6a754133203 2021-07-20T06:26:09,460 Successfully built megalodon 2021-07-20T06:26:09,844 Removed build tracker: '/tmp/pip-req-tracker-q9280w99'