2021-07-21T11:17:44,086 Created temporary directory: /tmp/pip-ephem-wheel-cache-0v1uqz4v
2021-07-21T11:17:44,089 Created temporary directory: /tmp/pip-req-tracker-22wxve77
2021-07-21T11:17:44,089 Initialized build tracking at /tmp/pip-req-tracker-22wxve77
2021-07-21T11:17:44,090 Created build tracker: /tmp/pip-req-tracker-22wxve77
2021-07-21T11:17:44,090 Entered build tracker: /tmp/pip-req-tracker-22wxve77
2021-07-21T11:17:44,091 Created temporary directory: /tmp/pip-wheel-2bwq8ffy
2021-07-21T11:17:44,124 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2021-07-21T11:17:44,126 2 location(s) to search for versions of unifrac:
2021-07-21T11:17:44,126 * https://pypi.org/simple/unifrac/
2021-07-21T11:17:44,126 * https://www.piwheels.org/simple/unifrac/
2021-07-21T11:17:44,127 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2021-07-21T11:17:44,127 Getting page https://pypi.org/simple/unifrac/
2021-07-21T11:17:44,129 Found index url https://pypi.org/simple
2021-07-21T11:17:44,325   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz#sha256=94b4a1b146b35ee7f855ae602cedfab2ca179cc87e397d535fd3e7f64d4d7349 (from https://pypi.org/simple/unifrac/), version: 0.10.0
2021-07-21T11:17:44,325   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd (from https://pypi.org/simple/unifrac/), version: 0.20.1
2021-07-21T11:17:44,326 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2021-07-21T11:17:44,326 Getting page https://www.piwheels.org/simple/unifrac/
2021-07-21T11:17:44,327 Found index url https://www.piwheels.org/simple
2021-07-21T11:17:44,466 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/
2021-07-21T11:17:44,467 Skipping link: not a file: https://pypi.org/simple/unifrac/
2021-07-21T11:17:44,495 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2021-07-21T11:17:44,514 Collecting unifrac==0.20.1
2021-07-21T11:17:44,516   Created temporary directory: /tmp/pip-unpack-b9jnc8yh
2021-07-21T11:17:44,746   Downloading unifrac-0.20.1.tar.gz (231 kB)
2021-07-21T11:17:44,985   Added unifrac==0.20.1 from https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd to build tracker '/tmp/pip-req-tracker-22wxve77'
2021-07-21T11:17:44,986     Running setup.py (path:/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py) egg_info for package unifrac
2021-07-21T11:17:44,987     Created temporary directory: /tmp/pip-pip-egg-info-eohglls4
2021-07-21T11:17:44,987     Running command python setup.py egg_info
2021-07-21T11:17:47,501     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/unifrac/_api.pxd
2021-07-21T11:17:47,501       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-21T11:17:53,950     Compiling unifrac/_api.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd.
2021-07-21T11:17:53,950     [1/1] Cythonizing unifrac/_api.pyx
2021-07-21T11:17:54,187     running egg_info
2021-07-21T11:17:54,189     creating /tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info
2021-07-21T11:17:54,190     writing /tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/PKG-INFO
2021-07-21T11:17:54,193     writing dependency_links to /tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/dependency_links.txt
2021-07-21T11:17:54,195     writing requirements to /tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/requires.txt
2021-07-21T11:17:54,196     writing top-level names to /tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/top_level.txt
2021-07-21T11:17:54,198     writing manifest file '/tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/SOURCES.txt'
2021-07-21T11:17:54,526     reading manifest file '/tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/SOURCES.txt'
2021-07-21T11:17:54,528     reading manifest template 'MANIFEST.in'
2021-07-21T11:17:54,539     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-21T11:17:54,540     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2021-07-21T11:17:54,541     warning: no previously-included files matching '.git' found anywhere in distribution
2021-07-21T11:17:54,541     warning: no previously-included files matching '*.so' found anywhere in distribution
2021-07-21T11:17:54,542     warning: no previously-included files matching '.*.swp' found anywhere in distribution
2021-07-21T11:17:54,546     writing manifest file '/tmp/pip-pip-egg-info-eohglls4/unifrac.egg-info/SOURCES.txt'
2021-07-21T11:17:54,857   Source in /tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880 has version 0.20.1, which satisfies requirement unifrac==0.20.1 from https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd
2021-07-21T11:17:54,858   Removed unifrac==0.20.1 from https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz#sha256=e851bd56269d16b5d005e20c92af4c566bf98ceebca4901085cdb68df6183afd from build tracker '/tmp/pip-req-tracker-22wxve77'
2021-07-21T11:17:54,863 Created temporary directory: /tmp/pip-unpack-r43qx_pq
2021-07-21T11:17:54,863 Building wheels for collected packages: unifrac
2021-07-21T11:17:54,869   Created temporary directory: /tmp/pip-wheel-bne3k0sr
2021-07-21T11:17:54,869   Building wheel for unifrac (setup.py): started
2021-07-21T11:17:54,869   Destination directory: /tmp/pip-wheel-bne3k0sr
2021-07-21T11:17:54,870   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bne3k0sr
2021-07-21T11:17:57,182   running bdist_wheel
2021-07-21T11:17:57,187   running build
2021-07-21T11:17:57,188   running build_py
2021-07-21T11:17:57,329   creating build
2021-07-21T11:17:57,329   creating build/lib.linux-armv7l-3.9
2021-07-21T11:17:57,330   creating build/lib.linux-armv7l-3.9/unifrac
2021-07-21T11:17:57,331   copying unifrac/_methods.py -> build/lib.linux-armv7l-3.9/unifrac
2021-07-21T11:17:57,334   copying unifrac/_meta.py -> build/lib.linux-armv7l-3.9/unifrac
2021-07-21T11:17:57,336   copying unifrac/__init__.py -> build/lib.linux-armv7l-3.9/unifrac
2021-07-21T11:17:57,338   creating build/lib.linux-armv7l-3.9/unifrac/tests
2021-07-21T11:17:57,339   copying unifrac/tests/test_api.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-07-21T11:17:57,342   copying unifrac/tests/test_methods.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-07-21T11:17:57,344   copying unifrac/tests/__init__.py -> build/lib.linux-armv7l-3.9/unifrac/tests
2021-07-21T11:17:57,348   creating build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,349   copying unifrac/tests/data/crawford.tre -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,352   copying unifrac/tests/data/test.faith.exp -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,355   copying unifrac/tests/data/t2.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,357   copying unifrac/tests/data/e1.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,361   copying unifrac/tests/data/crawford.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,367   copying unifrac/tests/data/bad_tips.tre -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,370   copying unifrac/tests/data/t1.newick -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,373   copying unifrac/tests/data/e2.biom -> build/lib.linux-armv7l-3.9/unifrac/tests/data
2021-07-21T11:17:57,377   running build_ext
2021-07-21T11:17:57,378   Compiling SSU
2021-07-21T11:17:57,767   rm -f *.o ssu
2021-07-21T11:17:58,078   h5c++ -mfma -march=native -Wextra -Wno-unused-parameter -Wall  -std=c++11 -pedantic -I. -O4 -fPIC -L/lib -c tree.cpp -o tree.o
2021-07-21T11:17:58,119   arm-linux-gnueabihf-g++: error: unrecognized command-line option ‘-mfma’
2021-07-21T11:17:58,120   make: *** [Makefile:111: tree.o] Error 1
2021-07-21T11:17:58,122   Traceback (most recent call last):
2021-07-21T11:17:58,123     File "<string>", line 1, in <module>
2021-07-21T11:17:58,124     File "/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py", line 94, in <module>
2021-07-21T11:17:58,124       setup(
2021-07-21T11:17:58,125     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup
2021-07-21T11:17:58,125       return distutils.core.setup(**attrs)
2021-07-21T11:17:58,125     File "/usr/lib/python3.9/distutils/core.py", line 148, in setup
2021-07-21T11:17:58,126       dist.run_commands()
2021-07-21T11:17:58,126     File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands
2021-07-21T11:17:58,127       self.run_command(cmd)
2021-07-21T11:17:58,127     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-21T11:17:58,128       cmd_obj.run()
2021-07-21T11:17:58,128     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run
2021-07-21T11:17:58,129       self.run_command('build')
2021-07-21T11:17:58,129     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-21T11:17:58,130       self.distribution.run_command(command)
2021-07-21T11:17:58,130     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-21T11:17:58,131       cmd_obj.run()
2021-07-21T11:17:58,131     File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run
2021-07-21T11:17:58,132       self.run_command(cmd_name)
2021-07-21T11:17:58,132     File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command
2021-07-21T11:17:58,132       self.distribution.run_command(command)
2021-07-21T11:17:58,133     File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command
2021-07-21T11:17:58,134       cmd_obj.run()
2021-07-21T11:17:58,134     File "/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py", line 61, in run
2021-07-21T11:17:58,134       self.run_compile_ssu()
2021-07-21T11:17:58,135     File "/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py", line 65, in run_compile_ssu
2021-07-21T11:17:58,135       self.execute(compile_ssu, [], 'Compiling SSU')
2021-07-21T11:17:58,135     File "/usr/lib/python3.9/distutils/cmd.py", line 335, in execute
2021-07-21T11:17:58,136       util.execute(func, args, msg, dry_run=self.dry_run)
2021-07-21T11:17:58,136     File "/usr/lib/python3.9/distutils/util.py", line 304, in execute
2021-07-21T11:17:58,136       func(*args)
2021-07-21T11:17:58,137     File "/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py", line 44, in compile_ssu
2021-07-21T11:17:58,137       raise Exception('Error compiling ssu!')
2021-07-21T11:17:58,137   Exception: Error compiling ssu!
2021-07-21T11:17:58,284   Building wheel for unifrac (setup.py): finished with status 'error'
2021-07-21T11:17:58,284   ERROR: Failed building wheel for unifrac
2021-07-21T11:17:58,285   Running setup.py clean for unifrac
2021-07-21T11:17:58,285   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2bwq8ffy/unifrac_9d90133381d042b885238a1518968880/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-21T11:18:00,563   running clean
2021-07-21T11:18:00,566   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-21T11:18:00,573   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-21T11:18:00,573   'build/scripts-3.9' does not exist -- can't clean it
2021-07-21T11:18:00,574   removing 'build'
2021-07-21T11:18:00,695 Failed to build unifrac
2021-07-21T11:18:00,695 ERROR: Failed to build one or more wheels
2021-07-21T11:18:00,696 Exception information:
2021-07-21T11:18:00,696 Traceback (most recent call last):
2021-07-21T11:18:00,696   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-21T11:18:00,696     status = self.run(options, args)
2021-07-21T11:18:00,696   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-21T11:18:00,696     return func(self, options, args)
2021-07-21T11:18:00,696   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-21T11:18:00,696     raise CommandError(
2021-07-21T11:18:00,696 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-21T11:18:00,699 Removed build tracker: '/tmp/pip-req-tracker-22wxve77'