2021-07-28T17:52:40,371 Created temporary directory: /tmp/pip-ephem-wheel-cache-zuqsftsc
2021-07-28T17:52:40,374 Created temporary directory: /tmp/pip-req-tracker-uebbck8b
2021-07-28T17:52:40,374 Initialized build tracking at /tmp/pip-req-tracker-uebbck8b
2021-07-28T17:52:40,375 Created build tracker: /tmp/pip-req-tracker-uebbck8b
2021-07-28T17:52:40,375 Entered build tracker: /tmp/pip-req-tracker-uebbck8b
2021-07-28T17:52:40,376 Created temporary directory: /tmp/pip-wheel-u0kmnbhr
2021-07-28T17:52:40,407 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-28T17:52:40,407 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-28T17:52:40,408 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-28T17:52:40,408 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-28T17:52:40,408 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-28T17:52:40,411 WARNING: Location '/ont-bonito/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T17:52:40,411 WARNING: Location 't/ont-bonito/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T17:52:40,412 WARNING: Location 'm/ont-bonito/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T17:52:40,412 WARNING: Location 'p/ont-bonito/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T17:52:40,412 1 location(s) to search for versions of ont-bonito:
2021-07-28T17:52:40,412 * https://pypi.org/simple/ont-bonito/
2021-07-28T17:52:40,413 Fetching project page and analyzing links: https://pypi.org/simple/ont-bonito/
2021-07-28T17:52:40,413 Getting page https://pypi.org/simple/ont-bonito/
2021-07-28T17:52:40,415 Found index url https://pypi.org/simple
2021-07-28T17:52:40,606   Found link https://files.pythonhosted.org/packages/d9/db/561675d546075abac5f22cd30a78c084af0cf6aa376ace242405b801658f/ont-bonito-0.0.1.tar.gz#sha256=fd80e965c675250aa25d00121f9eb0787e3a878caecfd1946b9596c17f3dabfe (from https://pypi.org/simple/ont-bonito/), version: 0.0.1
2021-07-28T17:52:40,606   Found link https://files.pythonhosted.org/packages/1e/d1/8e91e83711e166c9da2dd39017c9ac471c516b87b48bcdc0e25a4cb12d95/ont-bonito-0.0.3.tar.gz#sha256=63095382dbacb5c9a4cdb68f44433d577875a92f94d70eda07e11124f218fe95 (from https://pypi.org/simple/ont-bonito/), version: 0.0.3
2021-07-28T17:52:40,607   Found link https://files.pythonhosted.org/packages/e6/97/ee764ddc586c5fcf9be804289a26d80ce31a1eabfd550b1276dead9b9de1/ont-bonito-0.0.4.tar.gz#sha256=1e0f833fc6a7fdcb64ffb344da6cf77bfdf283bcfe1c1e7e98d3e8c28f0adf62 (from https://pypi.org/simple/ont-bonito/), version: 0.0.4
2021-07-28T17:52:40,607   Found link https://files.pythonhosted.org/packages/51/2a/771af15029be16025022b91ee7675af7945fc0350e3c1190c7d1cad934d3/ont-bonito-0.0.5.tar.gz#sha256=a735e7998bad0e920a0ace486c92bc6628aff263b374267cf7ac6cba8b75c1fa (from https://pypi.org/simple/ont-bonito/), version: 0.0.5
2021-07-28T17:52:40,607   Found link https://files.pythonhosted.org/packages/60/99/f9b4e7db2b81d07ca49873fef96a1d3378248ee8730cf07fda1231cd8910/ont-bonito-0.0.7.tar.gz#sha256=a0d0edc70b6ae0f6e0153697a8fcb8237f0b4c4067e504ded202ed33b9bd6e54 (from https://pypi.org/simple/ont-bonito/), version: 0.0.7
2021-07-28T17:52:40,607   Found link https://files.pythonhosted.org/packages/3a/cc/a64e90955addd8b831e43decc9ee2cd8f8395c7c44ceef250bc60f2550f8/ont-bonito-0.0.8.tar.gz#sha256=8ee2c91f073ac448b2a330e12a4d922280e596b15e40170cd15b4f612ace7c53 (from https://pypi.org/simple/ont-bonito/), version: 0.0.8
2021-07-28T17:52:40,608   Found link https://files.pythonhosted.org/packages/29/db/59fef46c323e86347b7558ad3c5a775037ef6923bc62b7e15173fefeed82/ont-bonito-0.1.0.tar.gz#sha256=0098ce0cb09f022b7df4534dc7ba7f09cf4b30e358778fbed4adb200966e453d (from https://pypi.org/simple/ont-bonito/), version: 0.1.0
2021-07-28T17:52:40,608   Found link https://files.pythonhosted.org/packages/78/52/9f978f27aa96ccbb07ed86f25d599c28c80f41f6414f8035372e7acc00f6/ont-bonito-0.1.2.tar.gz#sha256=eb2b8ef67dd3c28f2ff44b5ec62c57964eb0114bcab32350cb720253a083c8e9 (from https://pypi.org/simple/ont-bonito/), version: 0.1.2
2021-07-28T17:52:40,608   Found link https://files.pythonhosted.org/packages/9c/53/044d2ab2e0d2c00f5331aa4f1623c888dbc818c7fba70d069d80529ed113/ont-bonito-0.1.3.tar.gz#sha256=23f9e99bf21d61e6586037be15d2dfefb4af5277612ae3f07ac91a3cec27ce10 (from https://pypi.org/simple/ont-bonito/), version: 0.1.3
2021-07-28T17:52:40,609   Found link https://files.pythonhosted.org/packages/59/8d/0c2eb31f833160e51648eae8d49bd6610bd6fad6ae5879e22a76187b5979/ont-bonito-0.1.4.tar.gz#sha256=3fc8df5ca099607eaabd745afd2de156d981b24f22e8b54ccaf53661b3dbb274 (from https://pypi.org/simple/ont-bonito/), version: 0.1.4
2021-07-28T17:52:40,609   Found link https://files.pythonhosted.org/packages/95/fa/8a178168ee44c7f66a4239e4a2a1569896e787397080d1e1e0c2b1a331c2/ont-bonito-0.1.5.tar.gz#sha256=4482aca7dfc73884df0fca6fb1310aa71edd1f927f4072c17ffb957b076594a0 (from https://pypi.org/simple/ont-bonito/), version: 0.1.5
2021-07-28T17:52:40,609   Found link https://files.pythonhosted.org/packages/43/3a/37759ab5cca2b641f6e8000ad79cf4c86708efd3a1a1cafd4112ca7abcc7/ont-bonito-0.2.0a1.tar.gz#sha256=76b6146a69086dbe22e48fe2585aba6908d7cccd692c547e76da22ca2e0dccbd (from https://pypi.org/simple/ont-bonito/), version: 0.2.0a1
2021-07-28T17:52:40,609   Found link https://files.pythonhosted.org/packages/9f/92/8bc665b17c156ddd88ca5d5aab8a0df099ffb508068ca6b773aa5695973b/ont-bonito-0.2.0.tar.gz#sha256=ad2fbe726985caa7553ea3900d83bcf498b5ce56cb9d35959a619a25ee574877 (from https://pypi.org/simple/ont-bonito/), version: 0.2.0
2021-07-28T17:52:40,610   Found link https://files.pythonhosted.org/packages/41/fc/a2d21c9eeca274194294321505035094e407f3eed3466a831eb6de657912/ont-bonito-0.2.1a0.tar.gz#sha256=ff4517fd925e8328c860fdb2844a047bacf8bb623bc161c10e18b87f2c7159f1 (from https://pypi.org/simple/ont-bonito/), version: 0.2.1a0
2021-07-28T17:52:40,610   Found link https://files.pythonhosted.org/packages/8d/1e/b5ea1a1ddcd184c797ebfe251ecbf23fa97850515acc175c8671d1f425d2/ont-bonito-0.2.1.tar.gz#sha256=248709e6308e8ac5f9e1c2e1e1ffc080fe1cd1a9f6095bd86f8768ec93b11978 (from https://pypi.org/simple/ont-bonito/), version: 0.2.1
2021-07-28T17:52:40,610   Found link https://files.pythonhosted.org/packages/9b/3f/5cc8fa4703f5322956fff3d14c50d10a4bc46cd116bb77afc107f9213377/ont-bonito-0.2.2a0.tar.gz#sha256=051c525e9bd8bcaa9530493973ce41e22a1e1e6a88255645b1b70ec61796377e (from https://pypi.org/simple/ont-bonito/), version: 0.2.2a0
2021-07-28T17:52:40,611   Found link https://files.pythonhosted.org/packages/b4/38/79e98f2506fd0152989541ca93f25838e4017526c54e2b9b57df806ab28e/ont-bonito-0.2.2.tar.gz#sha256=002bb5c9ecc57251c963904bf1a695de77e5bc42d7de3623909736b9a727def7 (from https://pypi.org/simple/ont-bonito/), version: 0.2.2
2021-07-28T17:52:40,611   Found link https://files.pythonhosted.org/packages/7b/5c/c58113d696ef7b470cae9308134d039a156de85bca856fab94f2024e5e7c/ont-bonito-0.2.3a0.tar.gz#sha256=1021a50ab5ded8e0a8ee4cb91dd12b69a5a4b2ec27866bd3aad0d51c59e89ce0 (from https://pypi.org/simple/ont-bonito/), version: 0.2.3a0
2021-07-28T17:52:40,611   Found link https://files.pythonhosted.org/packages/08/7f/c156a67a0aeb65da44d42c877d277e3135c79d934c943a64cff626fd317e/ont-bonito-0.2.3.tar.gz#sha256=44e49c86a7031a9168b581b469a388735acae43126d6f34f0d0daa0302b7447e (from https://pypi.org/simple/ont-bonito/), version: 0.2.3
2021-07-28T17:52:40,611   Found link https://files.pythonhosted.org/packages/64/2f/96816e8337128957d036e1a38b0ce8a5fa6b56fc6bd37462d56880b988de/ont-bonito-0.3.0a0.tar.gz#sha256=75056b0c7da36a5690c7adda4e51f87dd418b8092ddfe29e5a47fff6674f0c77 (from https://pypi.org/simple/ont-bonito/), version: 0.3.0a0
2021-07-28T17:52:40,612   Found link https://files.pythonhosted.org/packages/dd/bd/b1b51d7e504ac8b8f39a27acf479782be64d81d384fa5e4900050fdaa12d/ont-bonito-0.3.0.tar.gz#sha256=e3aae8026260678522115a8bdaba5d4ffa77a2e442aa4f7562e634eafd8d288d (from https://pypi.org/simple/ont-bonito/), version: 0.3.0
2021-07-28T17:52:40,612   Found link https://files.pythonhosted.org/packages/8e/95/db2f8b693a1f73ca3e26933e1ebe5413580c66124623ac7093b46dcccd88/ont-bonito-0.3.1.tar.gz#sha256=72d1c8f23b586e72b985ce02f08dec1d5b1dfde51febbb7677f3e469568bc00f (from https://pypi.org/simple/ont-bonito/), version: 0.3.1
2021-07-28T17:52:40,612   Found link https://files.pythonhosted.org/packages/4f/e2/0f912ead53ac7d84aa202e74ec661d619bf44a736a609eb7e18b9b67ad16/ont-bonito-0.3.2a0.tar.gz#sha256=2d45b56c511e91a528fbe72392340b64aa88fb69f9ab37dbb9dc803d63407e5b (from https://pypi.org/simple/ont-bonito/), version: 0.3.2a0
2021-07-28T17:52:40,613   Skipping link: No binaries permitted for ont-bonito: https://files.pythonhosted.org/packages/da/99/a3b4beaafacbd03215783a5e9e8f85cefbfcf66ca0d3341a0886acb0f7bc/ont_bonito-0.3.2a0-py3-none-any.whl#sha256=c622655cea50f18508ce6830f4f4775bdf1008a83ca168d6ea1cb576ccfc32a1 (from https://pypi.org/simple/ont-bonito/)
2021-07-28T17:52:40,613   Found link https://files.pythonhosted.org/packages/33/5e/124215a3710a22980a3c6eb6af39a26550141e174452e7f38809a4738f21/ont-bonito-0.3.2.tar.gz#sha256=758757638263775e159b195bb432a10542c819e6ea7acd12a81182c589e5233f (from https://pypi.org/simple/ont-bonito/), version: 0.3.2
2021-07-28T17:52:40,613   Found link https://files.pythonhosted.org/packages/98/32/dd17e7b95b93e933615f0ab8d8b49d8a45193fe0161cbbb4b7c34e378f8f/ont-bonito-0.3.3b0.tar.gz#sha256=e422c6762d21931aeefff8558aef260f877fd210d99c1248c2a9a48d94667743 (from https://pypi.org/simple/ont-bonito/), version: 0.3.3b0
2021-07-28T17:52:40,613   Found link https://files.pythonhosted.org/packages/24/23/1ed6f6a1fac7f0c16390b336283cec45d97d16221cef111b8df462ce9e4f/ont-bonito-0.3.5a0.tar.gz#sha256=84ad878a4c9b312d0aefc9bb67569cc854c2973a24cbce7b8540e0d73186374e (from https://pypi.org/simple/ont-bonito/), version: 0.3.5a0
2021-07-28T17:52:40,614   Found link https://files.pythonhosted.org/packages/50/8a/8733ae566d78e314a287358c58ef84390eac631838842e3695112ce63695/ont-bonito-0.3.5.tar.gz#sha256=e280df29a5de76494a29c98f3c4946d7108f3014bfaeda214eb54a937c380335 (from https://pypi.org/simple/ont-bonito/), version: 0.3.5
2021-07-28T17:52:40,614   Found link https://files.pythonhosted.org/packages/eb/33/fbea6ee60a3fedc3caff883b416583142d18c07ed05b5408f2f1ffa8493e/ont-bonito-0.3.6b0.tar.gz#sha256=580b839d6d13e455d548b143de34b37fa2bd42f5303aa59ed3d2d96633319574 (from https://pypi.org/simple/ont-bonito/), version: 0.3.6b0
2021-07-28T17:52:40,614   Found link https://files.pythonhosted.org/packages/0d/23/33458eb3c383f50eeb0bb59b4b0537a1bea3b487af6c8ca2ab897bb8ebe4/ont-bonito-0.3.6.tar.gz#sha256=65d49589bc00f6b34e8a9aafa0a2546dcbb477d19f5a5d487b4704c510cd1d3e (from https://pypi.org/simple/ont-bonito/), version: 0.3.6
2021-07-28T17:52:40,614   Found link https://files.pythonhosted.org/packages/09/a7/b82cd7ebd8aa7aab16444198185236f989b7b32b30f612b5aca49f26647e/ont-bonito-0.3.7.tar.gz#sha256=9de02f53257bd3a48ea98f2e1fc977b9b48d1205f595b2687cc6cbcdbc1a3714 (from https://pypi.org/simple/ont-bonito/), version: 0.3.7
2021-07-28T17:52:40,615   Found link https://files.pythonhosted.org/packages/1f/49/51f19e59d17a1b224639f730164f40794e37619b7e6929d5c6d79acf49b6/ont-bonito-0.3.8a0.tar.gz#sha256=7d7a1d489c94853b9503efe6b7801a1fbe426592cb229bf2050e06fc1d0a8363 (from https://pypi.org/simple/ont-bonito/), version: 0.3.8a0
2021-07-28T17:52:40,615   Found link https://files.pythonhosted.org/packages/6e/31/1c2bc95210d36d0feedc9b70aab58ad4617ec0a2ec2d4243c642fde12691/ont-bonito-0.3.8.tar.gz#sha256=f18ec073c841bb0ccfe9049530df370ab0fb19931614e8ba37316acaa58639a1 (from https://pypi.org/simple/ont-bonito/), version: 0.3.8
2021-07-28T17:52:40,615   Found link https://files.pythonhosted.org/packages/69/84/727b764926e98bdb04998e2245cbbea2913b8f08a3e4804b304382e53272/ont-bonito-0.4.0a0.tar.gz#sha256=8dfd75823c368cb0102930039d947a5315dda73343921419c484e9e0c20e29da (from https://pypi.org/simple/ont-bonito/), version: 0.4.0a0
2021-07-28T17:52:40,616   Found link https://files.pythonhosted.org/packages/50/d4/80be7268492c2e8862d883ad668761548b3ef2f6d5593b03b4ec872e8e77/ont-bonito-0.4.0.tar.gz#sha256=429310d56e2d7dabd91a9a9c972504a0aa2b6d6469563b14d4aae30adfe9a87e (from https://pypi.org/simple/ont-bonito/), version: 0.4.0
2021-07-28T17:52:40,616 Skipping link: not a file: https://pypi.org/simple/ont-bonito/
2021-07-28T17:52:40,639 Given no hashes to check 1 links for project 'ont-bonito': discarding no candidates
2021-07-28T17:52:40,657 Collecting ont-bonito==0.3.3b0
2021-07-28T17:52:40,659   Created temporary directory: /tmp/pip-unpack-zzthj29y
2021-07-28T17:52:40,838   Downloading ont-bonito-0.3.3b0.tar.gz (36 kB)
2021-07-28T17:52:40,954   Added ont-bonito==0.3.3b0 from https://files.pythonhosted.org/packages/98/32/dd17e7b95b93e933615f0ab8d8b49d8a45193fe0161cbbb4b7c34e378f8f/ont-bonito-0.3.3b0.tar.gz#sha256=e422c6762d21931aeefff8558aef260f877fd210d99c1248c2a9a48d94667743 to build tracker '/tmp/pip-req-tracker-uebbck8b'
2021-07-28T17:52:40,955     Running setup.py (path:/tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf/setup.py) egg_info for package ont-bonito
2021-07-28T17:52:40,956     Created temporary directory: /tmp/pip-pip-egg-info-w2utpcpb
2021-07-28T17:52:40,956     Running command python setup.py egg_info
2021-07-28T17:52:41,791     running egg_info
2021-07-28T17:52:41,794     creating /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info
2021-07-28T17:52:41,795     writing /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/PKG-INFO
2021-07-28T17:52:41,797     writing dependency_links to /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/dependency_links.txt
2021-07-28T17:52:41,799     writing entry points to /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/entry_points.txt
2021-07-28T17:52:41,800     writing requirements to /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/requires.txt
2021-07-28T17:52:41,801     writing top-level names to /tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/top_level.txt
2021-07-28T17:52:41,803     writing manifest file '/tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/SOURCES.txt'
2021-07-28T17:52:41,952     reading manifest file '/tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/SOURCES.txt'
2021-07-28T17:52:41,954     reading manifest template 'MANIFEST.in'
2021-07-28T17:52:41,957     adding license file 'LICENCE.txt'
2021-07-28T17:52:41,960     writing manifest file '/tmp/pip-pip-egg-info-w2utpcpb/ont_bonito.egg-info/SOURCES.txt'
2021-07-28T17:52:42,025   Source in /tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf has version 0.3.3b0, which satisfies requirement ont-bonito==0.3.3b0 from https://files.pythonhosted.org/packages/98/32/dd17e7b95b93e933615f0ab8d8b49d8a45193fe0161cbbb4b7c34e378f8f/ont-bonito-0.3.3b0.tar.gz#sha256=e422c6762d21931aeefff8558aef260f877fd210d99c1248c2a9a48d94667743
2021-07-28T17:52:42,026   Removed ont-bonito==0.3.3b0 from https://files.pythonhosted.org/packages/98/32/dd17e7b95b93e933615f0ab8d8b49d8a45193fe0161cbbb4b7c34e378f8f/ont-bonito-0.3.3b0.tar.gz#sha256=e422c6762d21931aeefff8558aef260f877fd210d99c1248c2a9a48d94667743 from build tracker '/tmp/pip-req-tracker-uebbck8b'
2021-07-28T17:52:42,030 Created temporary directory: /tmp/pip-unpack-_gwk8_w1
2021-07-28T17:52:42,031 Building wheels for collected packages: ont-bonito
2021-07-28T17:52:42,035   Created temporary directory: /tmp/pip-wheel-93bwaj5f
2021-07-28T17:52:42,036   Building wheel for ont-bonito (setup.py): started
2021-07-28T17:52:42,036   Destination directory: /tmp/pip-wheel-93bwaj5f
2021-07-28T17:52:42,036   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-93bwaj5f
2021-07-28T17:52:42,924   running bdist_wheel
2021-07-28T17:52:43,082   running build
2021-07-28T17:52:43,082   running build_py
2021-07-28T17:52:43,221   creating build
2021-07-28T17:52:43,221   creating build/lib
2021-07-28T17:52:43,222   creating build/lib/bonito
2021-07-28T17:52:43,223   copying bonito/fast5.py -> build/lib/bonito
2021-07-28T17:52:43,225   copying bonito/multiprocessing.py -> build/lib/bonito
2021-07-28T17:52:43,227   copying bonito/aligner.py -> build/lib/bonito
2021-07-28T17:52:43,229   copying bonito/training.py -> build/lib/bonito
2021-07-28T17:52:43,231   copying bonito/util.py -> build/lib/bonito
2021-07-28T17:52:43,233   copying bonito/nn.py -> build/lib/bonito
2021-07-28T17:52:43,235   copying bonito/__init__.py -> build/lib/bonito
2021-07-28T17:52:43,237   copying bonito/io.py -> build/lib/bonito
2021-07-28T17:52:43,240   creating build/lib/bonito/cli
2021-07-28T17:52:43,241   copying bonito/cli/pair.py -> build/lib/bonito/cli
2021-07-28T17:52:43,244   copying bonito/cli/train.py -> build/lib/bonito/cli
2021-07-28T17:52:43,246   copying bonito/cli/basecaller.py -> build/lib/bonito/cli
2021-07-28T17:52:43,248   copying bonito/cli/view.py -> build/lib/bonito/cli
2021-07-28T17:52:43,250   copying bonito/cli/__init__.py -> build/lib/bonito/cli
2021-07-28T17:52:43,252   copying bonito/cli/tune.py -> build/lib/bonito/cli
2021-07-28T17:52:43,254   copying bonito/cli/convert.py -> build/lib/bonito/cli
2021-07-28T17:52:43,256   copying bonito/cli/download.py -> build/lib/bonito/cli
2021-07-28T17:52:43,258   copying bonito/cli/evaluate.py -> build/lib/bonito/cli
2021-07-28T17:52:43,261   creating build/lib/bonito/crf
2021-07-28T17:52:43,262   copying bonito/crf/model.py -> build/lib/bonito/crf
2021-07-28T17:52:43,265   copying bonito/crf/__init__.py -> build/lib/bonito/crf
2021-07-28T17:52:43,266   copying bonito/crf/basecall.py -> build/lib/bonito/crf
2021-07-28T17:52:43,269   creating build/lib/bonito/ctc
2021-07-28T17:52:43,270   copying bonito/ctc/model.py -> build/lib/bonito/ctc
2021-07-28T17:52:43,273   copying bonito/ctc/__init__.py -> build/lib/bonito/ctc
2021-07-28T17:52:43,274   copying bonito/ctc/basecall.py -> build/lib/bonito/ctc
2021-07-28T17:52:43,276   running egg_info
2021-07-28T17:52:43,291   writing ont_bonito.egg-info/PKG-INFO
2021-07-28T17:52:43,294   writing dependency_links to ont_bonito.egg-info/dependency_links.txt
2021-07-28T17:52:43,295   writing entry points to ont_bonito.egg-info/entry_points.txt
2021-07-28T17:52:43,296   writing requirements to ont_bonito.egg-info/requires.txt
2021-07-28T17:52:43,297   writing top-level names to ont_bonito.egg-info/top_level.txt
2021-07-28T17:52:43,304   reading manifest file 'ont_bonito.egg-info/SOURCES.txt'
2021-07-28T17:52:43,306   reading manifest template 'MANIFEST.in'
2021-07-28T17:52:43,308   adding license file 'LICENCE.txt'
2021-07-28T17:52:43,312   writing manifest file 'ont_bonito.egg-info/SOURCES.txt'
2021-07-28T17:52:43,314   creating build/lib/bonito/data
2021-07-28T17:52:43,315   copying bonito/data/README.md -> build/lib/bonito/data
2021-07-28T17:52:43,317   creating build/lib/bonito/models
2021-07-28T17:52:43,318   copying bonito/models/README.md -> build/lib/bonito/models
2021-07-28T17:52:43,320   creating build/lib/bonito/models/configs
2021-07-28T17:52:43,321   copying bonito/models/configs/dna_r9.4.1@v1.toml -> build/lib/bonito/models/configs
2021-07-28T17:52:43,323   copying bonito/models/configs/dna_r9.4.1@v2.toml -> build/lib/bonito/models/configs
2021-07-28T17:52:43,325   copying bonito/models/configs/dna_r9.4.1@v3.toml -> build/lib/bonito/models/configs
2021-07-28T17:52:43,332   installing to build/bdist.linux-armv7l/wheel
2021-07-28T17:52:43,332   running install
2021-07-28T17:52:43,334   running install_lib
2021-07-28T17:52:43,337   creating build/bdist.linux-armv7l
2021-07-28T17:52:43,338   creating build/bdist.linux-armv7l/wheel
2021-07-28T17:52:43,339   creating build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,341   creating build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,342   copying build/lib/bonito/cli/pair.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,344   copying build/lib/bonito/cli/train.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,347   copying build/lib/bonito/cli/basecaller.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,349   copying build/lib/bonito/cli/view.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,350   copying build/lib/bonito/cli/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,352   copying build/lib/bonito/cli/tune.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,354   copying build/lib/bonito/cli/convert.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,357   copying build/lib/bonito/cli/download.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,359   copying build/lib/bonito/cli/evaluate.py -> build/bdist.linux-armv7l/wheel/bonito/cli
2021-07-28T17:52:43,361   copying build/lib/bonito/fast5.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,365   creating build/bdist.linux-armv7l/wheel/bonito/data
2021-07-28T17:52:43,365   copying build/lib/bonito/data/README.md -> build/bdist.linux-armv7l/wheel/bonito/data
2021-07-28T17:52:43,367   copying build/lib/bonito/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,371   creating build/bdist.linux-armv7l/wheel/bonito/models
2021-07-28T17:52:43,371   copying build/lib/bonito/models/README.md -> build/bdist.linux-armv7l/wheel/bonito/models
2021-07-28T17:52:43,374   creating build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-07-28T17:52:43,375   copying build/lib/bonito/models/configs/dna_r9.4.1@v2.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-07-28T17:52:43,378   copying build/lib/bonito/models/configs/dna_r9.4.1@v1.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-07-28T17:52:43,380   copying build/lib/bonito/models/configs/dna_r9.4.1@v3.toml -> build/bdist.linux-armv7l/wheel/bonito/models/configs
2021-07-28T17:52:43,382   copying build/lib/bonito/aligner.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,384   copying build/lib/bonito/training.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,387   creating build/bdist.linux-armv7l/wheel/bonito/crf
2021-07-28T17:52:43,388   copying build/lib/bonito/crf/model.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-07-28T17:52:43,390   copying build/lib/bonito/crf/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-07-28T17:52:43,392   copying build/lib/bonito/crf/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/crf
2021-07-28T17:52:43,395   copying build/lib/bonito/util.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,397   copying build/lib/bonito/nn.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,399   copying build/lib/bonito/__init__.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,402   creating build/bdist.linux-armv7l/wheel/bonito/ctc
2021-07-28T17:52:43,403   copying build/lib/bonito/ctc/model.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-07-28T17:52:43,405   copying build/lib/bonito/ctc/__init__.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-07-28T17:52:43,407   copying build/lib/bonito/ctc/basecall.py -> build/bdist.linux-armv7l/wheel/bonito/ctc
2021-07-28T17:52:43,409   copying build/lib/bonito/io.py -> build/bdist.linux-armv7l/wheel/bonito
2021-07-28T17:52:43,411   running install_egg_info
2021-07-28T17:52:43,419   Copying ont_bonito.egg-info to build/bdist.linux-armv7l/wheel/ont_bonito-0.3.3b0-py3.9.egg-info
2021-07-28T17:52:43,432   running install_scripts
2021-07-28T17:52:43,495   error: [Errno 2] No such file or directory: 'bonito'
2021-07-28T17:52:43,588   Building wheel for ont-bonito (setup.py): finished with status 'error'
2021-07-28T17:52:43,589   ERROR: Failed building wheel for ont-bonito
2021-07-28T17:52:43,589   Running setup.py clean for ont-bonito
2021-07-28T17:52:43,590   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u0kmnbhr/ont-bonito_6eb3003975f543699fe14e52e6ecc3bf/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-28T17:52:44,404   running clean
2021-07-28T17:52:44,407   removing 'build/lib' (and everything under it)
2021-07-28T17:52:44,420   removing 'build/bdist.linux-armv7l' (and everything under it)
2021-07-28T17:52:44,441   'build/scripts-3.9' does not exist -- can't clean it
2021-07-28T17:52:44,441   removing 'build'
2021-07-28T17:52:44,500 Failed to build ont-bonito
2021-07-28T17:52:44,501 ERROR: Failed to build one or more wheels
2021-07-28T17:52:44,501 Exception information:
2021-07-28T17:52:44,501 Traceback (most recent call last):
2021-07-28T17:52:44,501   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-28T17:52:44,501     status = self.run(options, args)
2021-07-28T17:52:44,501   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-28T17:52:44,501     return func(self, options, args)
2021-07-28T17:52:44,501   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-28T17:52:44,501     raise CommandError(
2021-07-28T17:52:44,501 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-28T17:52:44,504 Removed build tracker: '/tmp/pip-req-tracker-uebbck8b'