2021-07-28T19:45:44,293 Created temporary directory: /tmp/pip-ephem-wheel-cache-icpxk25q 2021-07-28T19:45:44,296 Created temporary directory: /tmp/pip-req-tracker-x13obegd 2021-07-28T19:45:44,296 Initialized build tracking at /tmp/pip-req-tracker-x13obegd 2021-07-28T19:45:44,297 Created build tracker: /tmp/pip-req-tracker-x13obegd 2021-07-28T19:45:44,297 Entered build tracker: /tmp/pip-req-tracker-x13obegd 2021-07-28T19:45:44,297 Created temporary directory: /tmp/pip-wheel-2ounhmqj 2021-07-28T19:45:44,328 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T19:45:44,329 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T19:45:44,329 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T19:45:44,330 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T19:45:44,330 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T19:45:44,332 WARNING: Location '/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:45:44,333 WARNING: Location 't/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:45:44,333 WARNING: Location 'm/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:45:44,333 WARNING: Location 'p/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:45:44,334 1 location(s) to search for versions of jcvi: 2021-07-28T19:45:44,334 * https://pypi.org/simple/jcvi/ 2021-07-28T19:45:44,334 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-07-28T19:45:44,335 Getting page https://pypi.org/simple/jcvi/ 2021-07-28T19:45:44,336 Found index url https://pypi.org/simple 2021-07-28T19:45:44,454 Found link 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T19:45:44,467 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T19:45:44,467 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T19:45:44,468 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T19:45:44,468 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T19:45:44,468 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T19:45:44,469 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T19:45:44,469 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T19:45:44,469 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T19:45:44,469 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T19:45:44,470 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T19:45:44,470 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T19:45:44,470 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T19:45:44,471 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T19:45:44,471 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T19:45:44,471 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T19:45:44,471 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T19:45:44,472 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T19:45:44,472 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T19:45:44,497 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T19:45:44,514 Collecting jcvi==1.1.1 2021-07-28T19:45:44,516 Created temporary directory: /tmp/pip-unpack-7xb6jo3w 2021-07-28T19:45:44,797 Downloading jcvi-1.1.1.tar.gz (829 kB) 2021-07-28T19:45:45,553 Added jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb to build tracker '/tmp/pip-req-tracker-x13obegd' 2021-07-28T19:45:45,554 Running setup.py (path:/tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0/setup.py) egg_info for package jcvi 2021-07-28T19:45:45,555 Created temporary directory: /tmp/pip-pip-egg-info-s0zirra7 2021-07-28T19:45:45,555 Running command python setup.py egg_info 2021-07-28T19:45:46,908 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.1' to '1.1.1' 2021-07-28T19:45:46,909 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:45:46,953 running egg_info 2021-07-28T19:45:46,955 creating /tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info 2021-07-28T19:45:46,956 writing /tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/PKG-INFO 2021-07-28T19:45:46,959 writing dependency_links to /tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/dependency_links.txt 2021-07-28T19:45:46,961 writing requirements to /tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/requires.txt 2021-07-28T19:45:46,962 writing top-level names to /tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/top_level.txt 2021-07-28T19:45:46,964 writing manifest file '/tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:45:46,988 reading manifest file '/tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:45:46,990 reading manifest template 'MANIFEST.in' 2021-07-28T19:45:46,993 adding license file 'LICENSE' 2021-07-28T19:45:47,001 writing manifest file '/tmp/pip-pip-egg-info-s0zirra7/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:45:47,106 Source in /tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0 has version 1.1.1, which satisfies requirement jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb 2021-07-28T19:45:47,107 Removed jcvi==1.1.1 from https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb from build tracker '/tmp/pip-req-tracker-x13obegd' 2021-07-28T19:45:47,111 Created temporary directory: /tmp/pip-unpack-5v6j0kp6 2021-07-28T19:45:47,112 Building wheels for collected packages: jcvi 2021-07-28T19:45:47,117 Created temporary directory: /tmp/pip-wheel-4r9pmr2i 2021-07-28T19:45:47,117 Building wheel for jcvi (setup.py): started 2021-07-28T19:45:47,117 Destination directory: /tmp/pip-wheel-4r9pmr2i 2021-07-28T19:45:47,118 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4r9pmr2i 2021-07-28T19:45:48,430 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.1' to '1.1.1' 2021-07-28T19:45:48,430 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:45:48,487 running bdist_wheel 2021-07-28T19:45:48,491 running build 2021-07-28T19:45:48,492 running build_py 2021-07-28T19:45:48,497 creating build 2021-07-28T19:45:48,497 creating build/lib.linux-armv7l-3.9 2021-07-28T19:45:48,498 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:45:48,499 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:45:48,501 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:45:48,503 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,504 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,506 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,508 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,511 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,513 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,514 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,516 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,519 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,521 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,523 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,525 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,527 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:45:48,531 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,532 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,534 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,536 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,538 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,541 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,543 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,545 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,548 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,550 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,552 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,555 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,557 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,558 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,560 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,563 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,564 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,568 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,571 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,574 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,576 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,578 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,580 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,585 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,589 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,592 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,594 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,596 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,597 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,599 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,603 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:48,607 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,608 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,611 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,614 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,617 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,619 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,621 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,623 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,625 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,627 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,629 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,631 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,635 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,638 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,641 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,644 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,647 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,649 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,651 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,654 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,657 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,659 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,662 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,664 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,667 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,669 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,671 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,674 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:48,678 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,678 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,681 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,682 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,685 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,687 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,690 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,692 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,694 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,697 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,699 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,702 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,704 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,707 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,710 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,712 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,714 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,717 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,718 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,721 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,723 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,725 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,727 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,729 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:45:48,734 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,735 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,738 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,740 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,742 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,744 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,747 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,749 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,751 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,753 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,755 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,758 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,760 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,761 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,764 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,766 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,769 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,771 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,773 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,776 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,777 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,781 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,784 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,786 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,796 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,798 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,800 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,803 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:45:48,809 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,810 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,813 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,815 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,818 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,820 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,821 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,825 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,827 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,829 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,831 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,833 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,837 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:45:48,841 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,841 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,844 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,846 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,849 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,852 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,854 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,857 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,859 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,861 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,863 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,865 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,868 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,869 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:45:48,873 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,874 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,877 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,880 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,882 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,885 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,887 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,889 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,891 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,894 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,896 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,898 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,901 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,905 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,906 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,909 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,911 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,913 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:45:48,916 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,917 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,920 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,922 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,925 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,926 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,927 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,930 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,932 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,935 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,937 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:45:48,939 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,940 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,943 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,946 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,948 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,951 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,952 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,955 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,958 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,960 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,963 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,965 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:45:48,967 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:48,968 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:48,970 running egg_info 2021-07-28T19:45:48,979 writing jcvi.egg-info/PKG-INFO 2021-07-28T19:45:48,981 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T19:45:48,983 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T19:45:48,984 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T19:45:49,006 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:45:49,012 reading manifest template 'MANIFEST.in' 2021-07-28T19:45:49,016 adding license file 'LICENSE' 2021-07-28T19:45:49,028 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:45:49,034 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:49,036 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:49,038 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,041 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,045 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,048 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,051 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,054 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,056 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,058 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,061 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,063 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,067 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,070 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:45:49,087 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T19:45:49,088 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.1' 2021-07-28T19:45:49,089 running build_ext 2021-07-28T19:45:49,169 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T19:45:49,762 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0/jcvi/assembly/chic.pyx 2021-07-28T19:45:49,762 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:45:52,638 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T19:45:52,645 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2ounhmqj/jcvi_a710f05be4e64025b10be3345fe174b0/jcvi/formats/cblast.pyx 2021-07-28T19:45:52,645 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:45:53,657 building 'jcvi.assembly.chic' extension 2021-07-28T19:45:53,658 creating build/temp.linux-armv7l-3.9 2021-07-28T19:45:53,659 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T19:45:53,661 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:45:53,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T19:45:54,047 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T19:45:54,048 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T19:45:54,048 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T19:45:54,048 from jcvi/assembly/chic.c:612: 2021-07-28T19:45:54,048 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T19:45:54,048 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T19:45:54,049 | ^~~~~~~ 2021-07-28T19:45:57,833 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:45:57,968 building 'jcvi.formats.cblast' extension 2021-07-28T19:45:57,969 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:45:57,969 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T19:46:07,517 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:46:07,671 installing to build/bdist.linux-armv7l/wheel 2021-07-28T19:46:07,671 running install 2021-07-28T19:46:07,673 running install_lib 2021-07-28T19:46:07,677 creating build/bdist.linux-armv7l 2021-07-28T19:46:07,677 creating build/bdist.linux-armv7l/wheel 2021-07-28T19:46:07,679 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:07,681 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,682 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,685 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,688 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,692 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,694 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,695 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,698 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,701 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,703 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,705 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,708 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,711 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:07,714 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,715 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,718 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,720 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,723 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,726 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,728 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,731 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,735 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,737 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,740 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,743 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,746 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,747 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,749 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,752 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,770 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,772 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,777 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,780 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,783 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,785 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,788 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,790 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,793 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,799 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,805 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,808 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,810 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,812 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,814 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,816 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,821 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:07,825 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,826 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,830 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,832 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,836 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,838 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,841 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,844 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,846 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,848 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,850 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,853 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,857 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,862 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,866 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,869 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,872 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,875 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,877 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,881 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,884 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,886 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,889 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,891 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,900 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,903 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,906 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,908 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,910 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,913 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:07,916 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,917 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,920 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,922 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,924 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,927 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,930 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,932 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,934 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,937 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,941 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,943 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,946 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,949 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,953 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,955 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,958 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,961 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,963 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,966 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,968 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,971 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,973 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,975 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:07,979 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,980 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,984 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,986 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,988 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,991 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,994 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:07,997 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,000 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,002 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,005 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,008 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,010 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,012 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,015 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,017 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,020 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,023 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,025 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,028 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,030 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,033 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,036 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,039 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,041 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,043 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,045 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,048 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:08,055 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:08,058 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,059 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,062 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,064 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,067 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,068 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,070 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,073 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,076 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,078 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,081 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,084 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,087 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:08,090 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,091 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,094 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,096 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,100 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,104 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,107 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,110 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,113 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,115 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,118 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,118 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,123 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,125 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,127 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,130 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,132 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,138 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,140 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,141 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,145 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,148 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,150 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,153 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:08,156 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,159 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,162 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,164 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:08,168 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,169 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,172 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,175 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,178 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,181 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,184 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,185 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,188 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,191 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,193 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,195 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,198 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,202 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,204 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,207 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,209 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,212 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:08,214 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:08,217 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,218 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,221 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,224 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,227 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,228 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,230 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,233 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,236 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,240 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,242 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:08,245 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,246 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,249 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,252 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,254 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,258 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,259 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,262 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,266 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,268 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,270 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,273 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:08,275 running install_egg_info 2021-07-28T19:46:08,284 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.1-py3.9.egg-info 2021-07-28T19:46:08,300 running install_scripts 2021-07-28T19:46:08,357 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T19:46:08,362 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.1.dist-info/WHEEL 2021-07-28T19:46:08,365 creating '/tmp/pip-wheel-4r9pmr2i/jcvi-1.1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T19:46:08,367 adding 'jcvi/__init__.py' 2021-07-28T19:46:08,368 adding 'jcvi/_version.py' 2021-07-28T19:46:08,370 adding 'jcvi/algorithms/__init__.py' 2021-07-28T19:46:08,371 adding 'jcvi/algorithms/__main__.py' 2021-07-28T19:46:08,373 adding 'jcvi/algorithms/ec.py' 2021-07-28T19:46:08,375 adding 'jcvi/algorithms/formula.py' 2021-07-28T19:46:08,378 adding 'jcvi/algorithms/graph.py' 2021-07-28T19:46:08,379 adding 'jcvi/algorithms/lis.py' 2021-07-28T19:46:08,382 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T19:46:08,384 adding 'jcvi/algorithms/matrix.py' 2021-07-28T19:46:08,386 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T19:46:08,387 adding 'jcvi/algorithms/ml.py' 2021-07-28T19:46:08,388 adding 'jcvi/algorithms/supermap.py' 2021-07-28T19:46:08,390 adding 'jcvi/algorithms/tsp.py' 2021-07-28T19:46:08,392 adding 'jcvi/annotation/__init__.py' 2021-07-28T19:46:08,393 adding 'jcvi/annotation/__main__.py' 2021-07-28T19:46:08,396 adding 'jcvi/annotation/ahrd.py' 2021-07-28T19:46:08,398 adding 'jcvi/annotation/automaton.py' 2021-07-28T19:46:08,400 adding 'jcvi/annotation/depth.py' 2021-07-28T19:46:08,401 adding 'jcvi/annotation/evm.py' 2021-07-28T19:46:08,404 adding 'jcvi/annotation/maker.py' 2021-07-28T19:46:08,407 adding 'jcvi/annotation/pasa.py' 2021-07-28T19:46:08,410 adding 'jcvi/annotation/qc.py' 2021-07-28T19:46:08,416 adding 'jcvi/annotation/reformat.py' 2021-07-28T19:46:08,418 adding 'jcvi/annotation/stats.py' 2021-07-28T19:46:08,420 adding 'jcvi/annotation/train.py' 2021-07-28T19:46:08,422 adding 'jcvi/apps/__init__.py' 2021-07-28T19:46:08,423 adding 'jcvi/apps/__main__.py' 2021-07-28T19:46:08,426 adding 'jcvi/apps/align.py' 2021-07-28T19:46:08,435 adding 'jcvi/apps/base.py' 2021-07-28T19:46:08,438 adding 'jcvi/apps/biomart.py' 2021-07-28T19:46:08,439 adding 'jcvi/apps/blastplus.py' 2021-07-28T19:46:08,441 adding 'jcvi/apps/bowtie.py' 2021-07-28T19:46:08,442 adding 'jcvi/apps/bwa.py' 2021-07-28T19:46:08,444 adding 'jcvi/apps/cap3.py' 2021-07-28T19:46:08,446 adding 'jcvi/apps/cdhit.py' 2021-07-28T19:46:08,447 adding 'jcvi/apps/emboss.py' 2021-07-28T19:46:08,450 adding 'jcvi/apps/fetch.py' 2021-07-28T19:46:08,453 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T19:46:08,455 adding 'jcvi/apps/gmap.py' 2021-07-28T19:46:08,458 adding 'jcvi/apps/grid.py' 2021-07-28T19:46:08,463 adding 'jcvi/apps/ks.py' 2021-07-28T19:46:08,465 adding 'jcvi/apps/lastz.py' 2021-07-28T19:46:08,466 adding 'jcvi/apps/mask.py' 2021-07-28T19:46:08,471 adding 'jcvi/apps/phylo.py' 2021-07-28T19:46:08,472 adding 'jcvi/apps/r.py' 2021-07-28T19:46:08,474 adding 'jcvi/apps/restriction.py' 2021-07-28T19:46:08,475 adding 'jcvi/apps/script.py' 2021-07-28T19:46:08,476 adding 'jcvi/apps/softlink.py' 2021-07-28T19:46:08,477 adding 'jcvi/apps/tesseract.py' 2021-07-28T19:46:08,482 adding 'jcvi/apps/uclust.py' 2021-07-28T19:46:08,484 adding 'jcvi/apps/uniprot.py' 2021-07-28T19:46:08,485 adding 'jcvi/apps/vecscreen.py' 2021-07-28T19:46:08,487 adding 'jcvi/assembly/__init__.py' 2021-07-28T19:46:08,488 adding 'jcvi/assembly/__main__.py' 2021-07-28T19:46:08,497 adding 'jcvi/assembly/allmaps.py' 2021-07-28T19:46:08,500 adding 'jcvi/assembly/allpaths.py' 2021-07-28T19:46:08,502 adding 'jcvi/assembly/amos.py' 2021-07-28T19:46:08,504 adding 'jcvi/assembly/automaton.py' 2021-07-28T19:46:08,505 adding 'jcvi/assembly/bambus.py' 2021-07-28T19:46:08,507 adding 'jcvi/assembly/base.py' 2021-07-28T19:46:08,512 adding 'jcvi/assembly/ca.py' 2021-07-28T19:46:08,559 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:46:08,563 adding 'jcvi/assembly/chic.pyx' 2021-07-28T19:46:08,564 adding 'jcvi/assembly/coverage.py' 2021-07-28T19:46:08,566 adding 'jcvi/assembly/gaps.py' 2021-07-28T19:46:08,569 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T19:46:08,574 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T19:46:08,582 adding 'jcvi/assembly/hic.py' 2021-07-28T19:46:08,588 adding 'jcvi/assembly/kmer.py' 2021-07-28T19:46:08,589 adding 'jcvi/assembly/meraculous.py' 2021-07-28T19:46:08,592 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T19:46:08,597 adding 'jcvi/assembly/patch.py' 2021-07-28T19:46:08,599 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T19:46:08,602 adding 'jcvi/assembly/postprocess.py' 2021-07-28T19:46:08,605 adding 'jcvi/assembly/preprocess.py' 2021-07-28T19:46:08,607 adding 'jcvi/assembly/sim.py' 2021-07-28T19:46:08,609 adding 'jcvi/assembly/soap.py' 2021-07-28T19:46:08,611 adding 'jcvi/assembly/sspace.py' 2021-07-28T19:46:08,613 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T19:46:08,615 adding 'jcvi/assembly/trinity.py' 2021-07-28T19:46:08,617 adding 'jcvi/assembly/unitig.py' 2021-07-28T19:46:08,619 adding 'jcvi/compara/__init__.py' 2021-07-28T19:46:08,620 adding 'jcvi/compara/__main__.py' 2021-07-28T19:46:08,622 adding 'jcvi/compara/blastfilter.py' 2021-07-28T19:46:08,626 adding 'jcvi/compara/catalog.py' 2021-07-28T19:46:08,630 adding 'jcvi/compara/fractionation.py' 2021-07-28T19:46:08,632 adding 'jcvi/compara/pad.py' 2021-07-28T19:46:08,634 adding 'jcvi/compara/phylogeny.py' 2021-07-28T19:46:08,636 adding 'jcvi/compara/quota.py' 2021-07-28T19:46:08,638 adding 'jcvi/compara/reconstruct.py' 2021-07-28T19:46:08,641 adding 'jcvi/compara/synfind.py' 2021-07-28T19:46:08,650 adding 'jcvi/compara/synteny.py' 2021-07-28T19:46:08,653 adding 'jcvi/formats/__init__.py' 2021-07-28T19:46:08,654 adding 'jcvi/formats/__main__.py' 2021-07-28T19:46:08,655 adding 'jcvi/formats/ace.py' 2021-07-28T19:46:08,662 adding 'jcvi/formats/agp.py' 2021-07-28T19:46:08,668 adding 'jcvi/formats/base.py' 2021-07-28T19:46:08,678 adding 'jcvi/formats/bed.py' 2021-07-28T19:46:08,685 adding 'jcvi/formats/blast.py' 2021-07-28T19:46:08,687 adding 'jcvi/formats/btab.py' 2021-07-28T19:46:08,831 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:46:08,839 adding 'jcvi/formats/cblast.pyx' 2021-07-28T19:46:08,840 adding 'jcvi/formats/cdt.py' 2021-07-28T19:46:08,842 adding 'jcvi/formats/chain.py' 2021-07-28T19:46:08,843 adding 'jcvi/formats/contig.py' 2021-07-28T19:46:08,845 adding 'jcvi/formats/coords.py' 2021-07-28T19:46:08,847 adding 'jcvi/formats/excel.py' 2021-07-28T19:46:08,857 adding 'jcvi/formats/fasta.py' 2021-07-28T19:46:08,861 adding 'jcvi/formats/fastq.py' 2021-07-28T19:46:08,863 adding 'jcvi/formats/fpc.py' 2021-07-28T19:46:08,865 adding 'jcvi/formats/genbank.py' 2021-07-28T19:46:08,879 adding 'jcvi/formats/gff.py' 2021-07-28T19:46:08,882 adding 'jcvi/formats/html.py' 2021-07-28T19:46:08,883 adding 'jcvi/formats/maf.py' 2021-07-28T19:46:08,884 adding 'jcvi/formats/obo.py' 2021-07-28T19:46:08,886 adding 'jcvi/formats/paf.py' 2021-07-28T19:46:08,887 adding 'jcvi/formats/pdf.py' 2021-07-28T19:46:08,888 adding 'jcvi/formats/posmap.py' 2021-07-28T19:46:08,890 adding 'jcvi/formats/psl.py' 2021-07-28T19:46:08,892 adding 'jcvi/formats/pyblast.py' 2021-07-28T19:46:08,896 adding 'jcvi/formats/sam.py' 2021-07-28T19:46:08,897 adding 'jcvi/formats/sbt.py' 2021-07-28T19:46:08,899 adding 'jcvi/formats/sizes.py' 2021-07-28T19:46:08,902 adding 'jcvi/formats/vcf.py' 2021-07-28T19:46:08,905 adding 'jcvi/graphics/__init__.py' 2021-07-28T19:46:08,906 adding 'jcvi/graphics/__main__.py' 2021-07-28T19:46:08,908 adding 'jcvi/graphics/align.py' 2021-07-28T19:46:08,911 adding 'jcvi/graphics/assembly.py' 2021-07-28T19:46:08,914 adding 'jcvi/graphics/base.py' 2021-07-28T19:46:08,916 adding 'jcvi/graphics/blastplot.py' 2021-07-28T19:46:08,919 adding 'jcvi/graphics/chromosome.py' 2021-07-28T19:46:08,921 adding 'jcvi/graphics/coverage.py' 2021-07-28T19:46:08,924 adding 'jcvi/graphics/dotplot.py' 2021-07-28T19:46:08,927 adding 'jcvi/graphics/glyph.py' 2021-07-28T19:46:08,931 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T19:46:08,932 adding 'jcvi/graphics/graph.py' 2021-07-28T19:46:08,934 adding 'jcvi/graphics/heatmap.py' 2021-07-28T19:46:08,936 adding 'jcvi/graphics/histogram.py' 2021-07-28T19:46:08,938 adding 'jcvi/graphics/karyotype.py' 2021-07-28T19:46:08,942 adding 'jcvi/graphics/landscape.py' 2021-07-28T19:46:08,944 adding 'jcvi/graphics/logo.py' 2021-07-28T19:46:08,945 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T19:46:08,948 adding 'jcvi/graphics/synteny.py' 2021-07-28T19:46:08,950 adding 'jcvi/graphics/table.py' 2021-07-28T19:46:08,953 adding 'jcvi/graphics/tree.py' 2021-07-28T19:46:08,955 adding 'jcvi/graphics/wheel.py' 2021-07-28T19:46:08,956 adding 'jcvi/graphics/whisker.py' 2021-07-28T19:46:08,958 adding 'jcvi/projects/__init__.py' 2021-07-28T19:46:08,959 adding 'jcvi/projects/__main__.py' 2021-07-28T19:46:08,962 adding 'jcvi/projects/age.py' 2021-07-28T19:46:08,963 adding 'jcvi/projects/alfalfa.py' 2021-07-28T19:46:08,966 adding 'jcvi/projects/allmaps.py' 2021-07-28T19:46:08,968 adding 'jcvi/projects/bites.py' 2021-07-28T19:46:08,969 adding 'jcvi/projects/heterosis.py' 2021-07-28T19:46:08,972 adding 'jcvi/projects/ies.py' 2021-07-28T19:46:08,975 adding 'jcvi/projects/misc.py' 2021-07-28T19:46:08,978 adding 'jcvi/projects/napus.py' 2021-07-28T19:46:08,981 adding 'jcvi/projects/pineapple.py' 2021-07-28T19:46:08,982 adding 'jcvi/projects/pistachio.py' 2021-07-28T19:46:08,991 adding 'jcvi/projects/str.py' 2021-07-28T19:46:08,994 adding 'jcvi/projects/sugarcane.py' 2021-07-28T19:46:08,997 adding 'jcvi/projects/synfind.py' 2021-07-28T19:46:09,000 adding 'jcvi/projects/tgbs.py' 2021-07-28T19:46:09,002 adding 'jcvi/projects/vanilla.py' 2021-07-28T19:46:09,004 adding 'jcvi/utils/__init__.py' 2021-07-28T19:46:09,005 adding 'jcvi/utils/__main__.py' 2021-07-28T19:46:09,008 adding 'jcvi/utils/aws.py' 2021-07-28T19:46:09,010 adding 'jcvi/utils/cbook.py' 2021-07-28T19:46:09,012 adding 'jcvi/utils/db.py' 2021-07-28T19:46:09,014 adding 'jcvi/utils/ez_setup.py' 2021-07-28T19:46:09,016 adding 'jcvi/utils/grouper.py' 2021-07-28T19:46:09,018 adding 'jcvi/utils/iter.py' 2021-07-28T19:46:09,020 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T19:46:09,022 adding 'jcvi/utils/range.py' 2021-07-28T19:46:09,023 adding 'jcvi/utils/table.py' 2021-07-28T19:46:09,025 adding 'jcvi/utils/taxonomy.py' 2021-07-28T19:46:09,028 adding 'jcvi/utils/webcolors.py' 2021-07-28T19:46:09,032 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T19:46:09,049 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T19:46:09,053 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T19:46:09,059 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T19:46:09,063 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T19:46:09,064 adding 'jcvi/utils/data/__init__.py' 2021-07-28T19:46:09,065 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T19:46:09,067 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T19:46:09,069 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T19:46:09,070 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T19:46:09,076 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T19:46:09,079 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T19:46:09,080 adding 'jcvi/utils/data/instance.json' 2021-07-28T19:46:09,082 adding 'jcvi/variation/__init__.py' 2021-07-28T19:46:09,083 adding 'jcvi/variation/__main__.py' 2021-07-28T19:46:09,088 adding 'jcvi/variation/cnv.py' 2021-07-28T19:46:09,091 adding 'jcvi/variation/deconvolute.py' 2021-07-28T19:46:09,092 adding 'jcvi/variation/delly.py' 2021-07-28T19:46:09,094 adding 'jcvi/variation/impute.py' 2021-07-28T19:46:09,096 adding 'jcvi/variation/phase.py' 2021-07-28T19:46:09,098 adding 'jcvi/variation/snp.py' 2021-07-28T19:46:09,104 adding 'jcvi/variation/str.py' 2021-07-28T19:46:09,106 adding 'jcvi/variation/tassel.py' 2021-07-28T19:46:09,108 adding 'jcvi-1.1.1.dist-info/LICENSE' 2021-07-28T19:46:09,110 adding 'jcvi-1.1.1.dist-info/METADATA' 2021-07-28T19:46:09,111 adding 'jcvi-1.1.1.dist-info/WHEEL' 2021-07-28T19:46:09,111 adding 'jcvi-1.1.1.dist-info/top_level.txt' 2021-07-28T19:46:09,115 adding 'jcvi-1.1.1.dist-info/RECORD' 2021-07-28T19:46:09,150 removing build/bdist.linux-armv7l/wheel 2021-07-28T19:46:09,459 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T19:46:09,477 Created wheel for jcvi: filename=jcvi-1.1.1-cp39-cp39-linux_armv7l.whl size=1243506 sha256=3bb6eae3967dd0ba7418b6aab40998da3f17f51390c44ae78a89876e2f6170cd 2021-07-28T19:46:09,477 Stored in directory: /tmp/pip-ephem-wheel-cache-icpxk25q/wheels/06/7c/72/5bcaf8bdf99e0c59e1b28514f623d70b0b7d407d60b0a18db4 2021-07-28T19:46:09,493 Successfully built jcvi 2021-07-28T19:46:09,539 Removed build tracker: '/tmp/pip-req-tracker-x13obegd'