2021-07-28T19:46:11,776 Created temporary directory: /tmp/pip-ephem-wheel-cache-xupoui79 2021-07-28T19:46:11,779 Created temporary directory: /tmp/pip-req-tracker-xsjrqlup 2021-07-28T19:46:11,779 Initialized build tracking at /tmp/pip-req-tracker-xsjrqlup 2021-07-28T19:46:11,780 Created build tracker: /tmp/pip-req-tracker-xsjrqlup 2021-07-28T19:46:11,780 Entered build tracker: /tmp/pip-req-tracker-xsjrqlup 2021-07-28T19:46:11,780 Created temporary directory: /tmp/pip-wheel-nbi193kk 2021-07-28T19:46:11,811 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T19:46:11,812 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T19:46:11,812 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T19:46:11,812 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T19:46:11,812 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T19:46:11,815 WARNING: Location '/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:46:11,815 WARNING: Location 't/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:46:11,815 WARNING: Location 'm/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:46:11,816 WARNING: Location 'p/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:46:11,816 1 location(s) to search for versions of jcvi: 2021-07-28T19:46:11,816 * https://pypi.org/simple/jcvi/ 2021-07-28T19:46:11,816 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-07-28T19:46:11,817 Getting page https://pypi.org/simple/jcvi/ 2021-07-28T19:46:11,818 Found index url https://pypi.org/simple 2021-07-28T19:46:11,933 Found link 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T19:46:11,947 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T19:46:11,947 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T19:46:11,947 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T19:46:11,947 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T19:46:11,948 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T19:46:11,948 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T19:46:11,948 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T19:46:11,949 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T19:46:11,949 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T19:46:11,949 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T19:46:11,949 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T19:46:11,950 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T19:46:11,950 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T19:46:11,950 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T19:46:11,951 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T19:46:11,951 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T19:46:11,951 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T19:46:11,951 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T19:46:11,978 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T19:46:11,997 Collecting jcvi==1.1.2 2021-07-28T19:46:11,998 Created temporary directory: /tmp/pip-unpack-gk0xftui 2021-07-28T19:46:12,435 Downloading jcvi-1.1.2.tar.gz (823 kB) 2021-07-28T19:46:13,212 Added jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 to build tracker '/tmp/pip-req-tracker-xsjrqlup' 2021-07-28T19:46:13,213 Running setup.py (path:/tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2/setup.py) egg_info for package jcvi 2021-07-28T19:46:13,214 Created temporary directory: /tmp/pip-pip-egg-info-2cpy871u 2021-07-28T19:46:13,214 Running command python setup.py egg_info 2021-07-28T19:46:14,662 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.2' to '1.1.2' 2021-07-28T19:46:14,662 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:46:14,711 running egg_info 2021-07-28T19:46:14,714 creating /tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info 2021-07-28T19:46:14,715 writing /tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/PKG-INFO 2021-07-28T19:46:14,718 writing dependency_links to /tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/dependency_links.txt 2021-07-28T19:46:14,720 writing requirements to /tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/requires.txt 2021-07-28T19:46:14,721 writing top-level names to /tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/top_level.txt 2021-07-28T19:46:14,723 writing manifest file '/tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:46:14,749 reading manifest file '/tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:46:14,750 reading manifest template 'MANIFEST.in' 2021-07-28T19:46:14,754 adding license file 'LICENSE' 2021-07-28T19:46:14,763 writing manifest file '/tmp/pip-pip-egg-info-2cpy871u/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:46:14,867 Source in /tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2 has version 1.1.2, which satisfies requirement jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 2021-07-28T19:46:14,868 Removed jcvi==1.1.2 from https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 from build tracker '/tmp/pip-req-tracker-xsjrqlup' 2021-07-28T19:46:14,872 Created temporary directory: /tmp/pip-unpack-d6c7vonx 2021-07-28T19:46:14,873 Building wheels for collected packages: jcvi 2021-07-28T19:46:14,878 Created temporary directory: /tmp/pip-wheel-8mjk0kiz 2021-07-28T19:46:14,878 Building wheel for jcvi (setup.py): started 2021-07-28T19:46:14,879 Destination directory: /tmp/pip-wheel-8mjk0kiz 2021-07-28T19:46:14,879 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8mjk0kiz 2021-07-28T19:46:16,246 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.2' to '1.1.2' 2021-07-28T19:46:16,246 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:46:16,310 running bdist_wheel 2021-07-28T19:46:16,315 running build 2021-07-28T19:46:16,315 running build_py 2021-07-28T19:46:16,321 creating build 2021-07-28T19:46:16,321 creating build/lib.linux-armv7l-3.9 2021-07-28T19:46:16,322 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:46:16,323 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:46:16,325 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:46:16,328 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,329 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,331 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,334 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,337 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,339 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,341 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,343 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,346 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,349 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,351 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,354 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,356 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:46:16,360 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,361 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,364 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,367 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,371 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,373 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,375 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,378 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,381 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,386 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,387 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,392 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,394 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,397 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,399 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,402 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,404 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,408 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,410 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,412 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,414 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,416 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,418 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,424 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,426 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,428 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,431 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,437 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,439 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,443 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,445 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,449 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,449 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,454 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,457 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,460 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,462 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,465 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,468 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,471 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,473 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,475 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,478 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,482 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,484 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,485 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,488 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,491 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,494 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:46:16,497 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,498 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,500 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,503 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,504 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,507 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,510 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,513 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,516 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,517 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,520 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,524 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:46:16,528 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,529 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,531 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,534 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,536 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,540 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,543 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,546 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,549 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,552 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,554 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,555 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,558 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,560 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,562 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,565 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,567 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,570 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,572 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,574 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,576 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,578 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,580 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,582 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,584 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,586 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,590 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,592 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:46:16,595 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,596 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,598 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,601 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,604 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,606 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,608 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,610 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,612 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,615 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,618 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,619 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,623 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:46:16,627 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,628 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,631 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,633 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,635 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,638 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,640 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,643 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,646 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,649 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,655 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,658 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,663 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,666 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,669 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,671 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,674 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,676 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,678 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,681 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,683 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,686 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,690 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,693 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,694 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,697 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,700 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,702 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,706 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,706 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,710 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,712 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,714 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,717 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,719 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,721 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,723 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,725 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,729 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:46:16,732 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,733 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,736 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,739 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,742 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,745 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,747 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,749 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,751 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,754 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,756 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,758 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,761 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,763 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,765 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,768 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,771 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,773 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,775 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,778 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,780 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,781 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,783 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,786 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:46:16,790 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,791 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,793 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,796 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,798 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,800 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,802 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,804 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,806 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,808 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,811 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,813 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,815 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,817 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:46:16,820 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,820 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,823 running egg_info 2021-07-28T19:46:16,833 writing jcvi.egg-info/PKG-INFO 2021-07-28T19:46:16,836 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T19:46:16,838 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T19:46:16,839 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T19:46:16,860 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:46:16,867 reading manifest template 'MANIFEST.in' 2021-07-28T19:46:16,870 adding license file 'LICENSE' 2021-07-28T19:46:16,903 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:46:16,910 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:16,913 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:16,915 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,918 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,922 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,925 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,929 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,933 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,935 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,937 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,940 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,942 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,947 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,950 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:46:16,969 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T19:46:16,971 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.2' 2021-07-28T19:46:16,971 running build_ext 2021-07-28T19:46:17,039 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T19:46:17,688 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2/jcvi/assembly/chic.pyx 2021-07-28T19:46:17,688 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:46:20,709 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T19:46:20,715 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-nbi193kk/jcvi_50ac051ce6814e99b0fa1bf8852ca8d2/jcvi/formats/cblast.pyx 2021-07-28T19:46:20,716 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:46:21,690 building 'jcvi.assembly.chic' extension 2021-07-28T19:46:21,690 creating build/temp.linux-armv7l-3.9 2021-07-28T19:46:21,690 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T19:46:21,691 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:46:21,692 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T19:46:22,121 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T19:46:22,121 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T19:46:22,121 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T19:46:22,122 from jcvi/assembly/chic.c:612: 2021-07-28T19:46:22,122 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T19:46:22,122 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T19:46:22,122 | ^~~~~~~ 2021-07-28T19:46:25,873 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:46:26,003 building 'jcvi.formats.cblast' extension 2021-07-28T19:46:26,004 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:46:26,004 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T19:46:35,536 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:46:35,692 installing to build/bdist.linux-armv7l/wheel 2021-07-28T19:46:35,692 running install 2021-07-28T19:46:35,693 running install_lib 2021-07-28T19:46:35,697 creating build/bdist.linux-armv7l 2021-07-28T19:46:35,698 creating build/bdist.linux-armv7l/wheel 2021-07-28T19:46:35,699 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:35,701 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,702 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,705 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,707 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,710 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,712 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,714 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,716 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,719 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,722 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,724 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,726 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,728 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:46:35,732 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,733 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,736 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,739 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,742 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,744 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,747 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,750 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,772 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,774 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,777 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,782 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,783 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,788 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,790 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,793 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,795 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,798 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,800 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,804 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,806 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,808 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,810 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,812 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,814 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,819 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,821 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,823 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,825 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,832 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,835 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,838 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,841 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:46:35,844 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,845 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,850 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,852 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,855 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,858 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,861 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,864 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,867 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,868 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,871 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,874 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,877 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,879 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,881 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,883 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,886 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,889 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:46:35,892 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,893 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,896 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,898 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,900 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,903 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,906 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,909 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,912 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,914 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,917 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,922 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:46:35,925 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,926 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,928 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,931 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,934 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,938 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,941 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,944 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,947 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,950 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,952 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,954 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,957 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,959 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,961 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,965 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,967 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,969 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,972 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,974 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,977 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,979 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,982 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,984 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,986 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,988 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,992 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,994 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:46:35,997 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:36,000 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,001 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,003 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,006 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,009 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,011 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,014 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,015 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,019 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,022 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,024 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,026 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,031 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:46:36,034 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:46:36,037 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,038 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,040 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,043 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,045 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,047 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,050 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,052 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,056 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,058 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,063 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,066 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,070 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,074 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,077 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,079 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,081 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,084 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,086 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,088 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,091 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,101 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,104 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,106 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,110 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,113 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,115 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,118 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,122 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,125 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:46:36,128 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,129 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,133 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,135 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,137 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,140 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,142 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,145 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,147 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,149 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,154 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:46:36,157 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,158 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,160 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,163 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,166 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,169 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,171 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,174 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,176 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,179 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,181 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,183 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,186 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,189 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,191 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,194 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,197 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,200 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,202 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,205 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,207 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,209 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,211 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,214 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:46:36,218 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,219 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,222 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,223 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,227 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,230 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,235 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,237 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,239 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,241 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,243 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,245 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,248 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,251 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,253 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,256 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:46:36,258 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,261 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,264 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,265 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,269 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,271 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,274 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,277 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,279 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,282 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,284 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,287 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:46:36,288 running install_egg_info 2021-07-28T19:46:36,300 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.2-py3.9.egg-info 2021-07-28T19:46:36,318 running install_scripts 2021-07-28T19:46:36,388 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T19:46:36,397 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.2.dist-info/WHEEL 2021-07-28T19:46:36,400 creating '/tmp/pip-wheel-8mjk0kiz/jcvi-1.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T19:46:36,402 adding 'jcvi/__init__.py' 2021-07-28T19:46:36,404 adding 'jcvi/_version.py' 2021-07-28T19:46:36,406 adding 'jcvi/algorithms/__init__.py' 2021-07-28T19:46:36,407 adding 'jcvi/algorithms/__main__.py' 2021-07-28T19:46:36,409 adding 'jcvi/algorithms/ec.py' 2021-07-28T19:46:36,412 adding 'jcvi/algorithms/formula.py' 2021-07-28T19:46:36,415 adding 'jcvi/algorithms/graph.py' 2021-07-28T19:46:36,417 adding 'jcvi/algorithms/lis.py' 2021-07-28T19:46:36,421 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T19:46:36,423 adding 'jcvi/algorithms/matrix.py' 2021-07-28T19:46:36,425 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T19:46:36,427 adding 'jcvi/algorithms/ml.py' 2021-07-28T19:46:36,428 adding 'jcvi/algorithms/supermap.py' 2021-07-28T19:46:36,430 adding 'jcvi/algorithms/tsp.py' 2021-07-28T19:46:36,432 adding 'jcvi/annotation/__init__.py' 2021-07-28T19:46:36,433 adding 'jcvi/annotation/__main__.py' 2021-07-28T19:46:36,437 adding 'jcvi/annotation/ahrd.py' 2021-07-28T19:46:36,439 adding 'jcvi/annotation/automaton.py' 2021-07-28T19:46:36,441 adding 'jcvi/annotation/depth.py' 2021-07-28T19:46:36,443 adding 'jcvi/annotation/evm.py' 2021-07-28T19:46:36,445 adding 'jcvi/annotation/maker.py' 2021-07-28T19:46:36,448 adding 'jcvi/annotation/pasa.py' 2021-07-28T19:46:36,451 adding 'jcvi/annotation/qc.py' 2021-07-28T19:46:36,457 adding 'jcvi/annotation/reformat.py' 2021-07-28T19:46:36,460 adding 'jcvi/annotation/stats.py' 2021-07-28T19:46:36,462 adding 'jcvi/annotation/train.py' 2021-07-28T19:46:36,464 adding 'jcvi/apps/__init__.py' 2021-07-28T19:46:36,466 adding 'jcvi/apps/__main__.py' 2021-07-28T19:46:36,468 adding 'jcvi/apps/align.py' 2021-07-28T19:46:36,478 adding 'jcvi/apps/base.py' 2021-07-28T19:46:36,480 adding 'jcvi/apps/biomart.py' 2021-07-28T19:46:36,482 adding 'jcvi/apps/blastplus.py' 2021-07-28T19:46:36,484 adding 'jcvi/apps/bowtie.py' 2021-07-28T19:46:36,485 adding 'jcvi/apps/bwa.py' 2021-07-28T19:46:36,487 adding 'jcvi/apps/cap3.py' 2021-07-28T19:46:36,489 adding 'jcvi/apps/cdhit.py' 2021-07-28T19:46:36,490 adding 'jcvi/apps/emboss.py' 2021-07-28T19:46:36,493 adding 'jcvi/apps/fetch.py' 2021-07-28T19:46:36,497 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T19:46:36,500 adding 'jcvi/apps/gmap.py' 2021-07-28T19:46:36,503 adding 'jcvi/apps/grid.py' 2021-07-28T19:46:36,508 adding 'jcvi/apps/ks.py' 2021-07-28T19:46:36,511 adding 'jcvi/apps/lastz.py' 2021-07-28T19:46:36,513 adding 'jcvi/apps/mask.py' 2021-07-28T19:46:36,518 adding 'jcvi/apps/phylo.py' 2021-07-28T19:46:36,520 adding 'jcvi/apps/r.py' 2021-07-28T19:46:36,521 adding 'jcvi/apps/restriction.py' 2021-07-28T19:46:36,523 adding 'jcvi/apps/script.py' 2021-07-28T19:46:36,524 adding 'jcvi/apps/softlink.py' 2021-07-28T19:46:36,526 adding 'jcvi/apps/tesseract.py' 2021-07-28T19:46:36,531 adding 'jcvi/apps/uclust.py' 2021-07-28T19:46:36,533 adding 'jcvi/apps/uniprot.py' 2021-07-28T19:46:36,534 adding 'jcvi/apps/vecscreen.py' 2021-07-28T19:46:36,537 adding 'jcvi/assembly/__init__.py' 2021-07-28T19:46:36,538 adding 'jcvi/assembly/__main__.py' 2021-07-28T19:46:36,547 adding 'jcvi/assembly/allmaps.py' 2021-07-28T19:46:36,550 adding 'jcvi/assembly/allpaths.py' 2021-07-28T19:46:36,552 adding 'jcvi/assembly/amos.py' 2021-07-28T19:46:36,555 adding 'jcvi/assembly/automaton.py' 2021-07-28T19:46:36,556 adding 'jcvi/assembly/bambus.py' 2021-07-28T19:46:36,558 adding 'jcvi/assembly/base.py' 2021-07-28T19:46:36,562 adding 'jcvi/assembly/ca.py' 2021-07-28T19:46:36,612 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:46:36,615 adding 'jcvi/assembly/chic.pyx' 2021-07-28T19:46:36,616 adding 'jcvi/assembly/coverage.py' 2021-07-28T19:46:36,618 adding 'jcvi/assembly/gaps.py' 2021-07-28T19:46:36,621 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T19:46:36,626 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T19:46:36,634 adding 'jcvi/assembly/hic.py' 2021-07-28T19:46:36,639 adding 'jcvi/assembly/kmer.py' 2021-07-28T19:46:36,641 adding 'jcvi/assembly/meraculous.py' 2021-07-28T19:46:36,643 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T19:46:36,648 adding 'jcvi/assembly/patch.py' 2021-07-28T19:46:36,650 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T19:46:36,652 adding 'jcvi/assembly/postprocess.py' 2021-07-28T19:46:36,655 adding 'jcvi/assembly/preprocess.py' 2021-07-28T19:46:36,657 adding 'jcvi/assembly/sim.py' 2021-07-28T19:46:36,659 adding 'jcvi/assembly/soap.py' 2021-07-28T19:46:36,661 adding 'jcvi/assembly/sspace.py' 2021-07-28T19:46:36,664 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T19:46:36,665 adding 'jcvi/assembly/trinity.py' 2021-07-28T19:46:36,668 adding 'jcvi/assembly/unitig.py' 2021-07-28T19:46:36,669 adding 'jcvi/compara/__init__.py' 2021-07-28T19:46:36,671 adding 'jcvi/compara/__main__.py' 2021-07-28T19:46:36,673 adding 'jcvi/compara/blastfilter.py' 2021-07-28T19:46:36,676 adding 'jcvi/compara/catalog.py' 2021-07-28T19:46:36,680 adding 'jcvi/compara/fractionation.py' 2021-07-28T19:46:36,682 adding 'jcvi/compara/pad.py' 2021-07-28T19:46:36,684 adding 'jcvi/compara/phylogeny.py' 2021-07-28T19:46:36,686 adding 'jcvi/compara/quota.py' 2021-07-28T19:46:36,688 adding 'jcvi/compara/reconstruct.py' 2021-07-28T19:46:36,690 adding 'jcvi/compara/synfind.py' 2021-07-28T19:46:36,698 adding 'jcvi/compara/synteny.py' 2021-07-28T19:46:36,701 adding 'jcvi/formats/__init__.py' 2021-07-28T19:46:36,702 adding 'jcvi/formats/__main__.py' 2021-07-28T19:46:36,704 adding 'jcvi/formats/ace.py' 2021-07-28T19:46:36,711 adding 'jcvi/formats/agp.py' 2021-07-28T19:46:36,717 adding 'jcvi/formats/base.py' 2021-07-28T19:46:36,727 adding 'jcvi/formats/bed.py' 2021-07-28T19:46:36,733 adding 'jcvi/formats/blast.py' 2021-07-28T19:46:36,735 adding 'jcvi/formats/btab.py' 2021-07-28T19:46:36,871 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:46:36,878 adding 'jcvi/formats/cblast.pyx' 2021-07-28T19:46:36,879 adding 'jcvi/formats/cdt.py' 2021-07-28T19:46:36,881 adding 'jcvi/formats/chain.py' 2021-07-28T19:46:36,883 adding 'jcvi/formats/contig.py' 2021-07-28T19:46:36,885 adding 'jcvi/formats/coords.py' 2021-07-28T19:46:36,886 adding 'jcvi/formats/excel.py' 2021-07-28T19:46:36,896 adding 'jcvi/formats/fasta.py' 2021-07-28T19:46:36,901 adding 'jcvi/formats/fastq.py' 2021-07-28T19:46:36,902 adding 'jcvi/formats/fpc.py' 2021-07-28T19:46:36,904 adding 'jcvi/formats/genbank.py' 2021-07-28T19:46:36,920 adding 'jcvi/formats/gff.py' 2021-07-28T19:46:36,922 adding 'jcvi/formats/html.py' 2021-07-28T19:46:36,924 adding 'jcvi/formats/maf.py' 2021-07-28T19:46:36,925 adding 'jcvi/formats/obo.py' 2021-07-28T19:46:36,926 adding 'jcvi/formats/paf.py' 2021-07-28T19:46:36,928 adding 'jcvi/formats/pdf.py' 2021-07-28T19:46:36,929 adding 'jcvi/formats/posmap.py' 2021-07-28T19:46:36,931 adding 'jcvi/formats/psl.py' 2021-07-28T19:46:36,932 adding 'jcvi/formats/pyblast.py' 2021-07-28T19:46:36,936 adding 'jcvi/formats/sam.py' 2021-07-28T19:46:36,938 adding 'jcvi/formats/sbt.py' 2021-07-28T19:46:36,940 adding 'jcvi/formats/sizes.py' 2021-07-28T19:46:36,943 adding 'jcvi/formats/vcf.py' 2021-07-28T19:46:36,945 adding 'jcvi/graphics/__init__.py' 2021-07-28T19:46:36,946 adding 'jcvi/graphics/__main__.py' 2021-07-28T19:46:36,949 adding 'jcvi/graphics/align.py' 2021-07-28T19:46:36,951 adding 'jcvi/graphics/assembly.py' 2021-07-28T19:46:36,955 adding 'jcvi/graphics/base.py' 2021-07-28T19:46:36,957 adding 'jcvi/graphics/blastplot.py' 2021-07-28T19:46:36,960 adding 'jcvi/graphics/chromosome.py' 2021-07-28T19:46:36,962 adding 'jcvi/graphics/coverage.py' 2021-07-28T19:46:36,964 adding 'jcvi/graphics/dotplot.py' 2021-07-28T19:46:36,967 adding 'jcvi/graphics/glyph.py' 2021-07-28T19:46:36,971 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T19:46:36,972 adding 'jcvi/graphics/graph.py' 2021-07-28T19:46:36,974 adding 'jcvi/graphics/heatmap.py' 2021-07-28T19:46:36,976 adding 'jcvi/graphics/histogram.py' 2021-07-28T19:46:36,978 adding 'jcvi/graphics/karyotype.py' 2021-07-28T19:46:36,982 adding 'jcvi/graphics/landscape.py' 2021-07-28T19:46:36,984 adding 'jcvi/graphics/logo.py' 2021-07-28T19:46:36,985 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T19:46:36,988 adding 'jcvi/graphics/synteny.py' 2021-07-28T19:46:36,990 adding 'jcvi/graphics/table.py' 2021-07-28T19:46:36,993 adding 'jcvi/graphics/tree.py' 2021-07-28T19:46:36,995 adding 'jcvi/graphics/wheel.py' 2021-07-28T19:46:36,996 adding 'jcvi/graphics/whisker.py' 2021-07-28T19:46:36,998 adding 'jcvi/projects/__init__.py' 2021-07-28T19:46:36,999 adding 'jcvi/projects/__main__.py' 2021-07-28T19:46:37,002 adding 'jcvi/projects/age.py' 2021-07-28T19:46:37,003 adding 'jcvi/projects/alfalfa.py' 2021-07-28T19:46:37,006 adding 'jcvi/projects/allmaps.py' 2021-07-28T19:46:37,007 adding 'jcvi/projects/bites.py' 2021-07-28T19:46:37,009 adding 'jcvi/projects/heterosis.py' 2021-07-28T19:46:37,011 adding 'jcvi/projects/ies.py' 2021-07-28T19:46:37,014 adding 'jcvi/projects/misc.py' 2021-07-28T19:46:37,018 adding 'jcvi/projects/napus.py' 2021-07-28T19:46:37,020 adding 'jcvi/projects/pineapple.py' 2021-07-28T19:46:37,022 adding 'jcvi/projects/pistachio.py' 2021-07-28T19:46:37,030 adding 'jcvi/projects/str.py' 2021-07-28T19:46:37,033 adding 'jcvi/projects/sugarcane.py' 2021-07-28T19:46:37,036 adding 'jcvi/projects/synfind.py' 2021-07-28T19:46:37,040 adding 'jcvi/projects/tgbs.py' 2021-07-28T19:46:37,042 adding 'jcvi/projects/vanilla.py' 2021-07-28T19:46:37,044 adding 'jcvi/utils/__init__.py' 2021-07-28T19:46:37,045 adding 'jcvi/utils/__main__.py' 2021-07-28T19:46:37,048 adding 'jcvi/utils/aws.py' 2021-07-28T19:46:37,050 adding 'jcvi/utils/cbook.py' 2021-07-28T19:46:37,053 adding 'jcvi/utils/db.py' 2021-07-28T19:46:37,055 adding 'jcvi/utils/ez_setup.py' 2021-07-28T19:46:37,056 adding 'jcvi/utils/grouper.py' 2021-07-28T19:46:37,058 adding 'jcvi/utils/iter.py' 2021-07-28T19:46:37,060 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T19:46:37,063 adding 'jcvi/utils/range.py' 2021-07-28T19:46:37,064 adding 'jcvi/utils/table.py' 2021-07-28T19:46:37,066 adding 'jcvi/utils/taxonomy.py' 2021-07-28T19:46:37,067 adding 'jcvi/utils/webcolors.py' 2021-07-28T19:46:37,070 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T19:46:37,087 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T19:46:37,092 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T19:46:37,097 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T19:46:37,101 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T19:46:37,103 adding 'jcvi/utils/data/__init__.py' 2021-07-28T19:46:37,104 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T19:46:37,105 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T19:46:37,107 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T19:46:37,108 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T19:46:37,114 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T19:46:37,117 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T19:46:37,118 adding 'jcvi/utils/data/instance.json' 2021-07-28T19:46:37,120 adding 'jcvi/variation/__init__.py' 2021-07-28T19:46:37,121 adding 'jcvi/variation/__main__.py' 2021-07-28T19:46:37,126 adding 'jcvi/variation/cnv.py' 2021-07-28T19:46:37,128 adding 'jcvi/variation/deconvolute.py' 2021-07-28T19:46:37,130 adding 'jcvi/variation/delly.py' 2021-07-28T19:46:37,132 adding 'jcvi/variation/impute.py' 2021-07-28T19:46:37,133 adding 'jcvi/variation/phase.py' 2021-07-28T19:46:37,135 adding 'jcvi/variation/snp.py' 2021-07-28T19:46:37,142 adding 'jcvi/variation/str.py' 2021-07-28T19:46:37,144 adding 'jcvi/variation/tassel.py' 2021-07-28T19:46:37,147 adding 'jcvi-1.1.2.dist-info/LICENSE' 2021-07-28T19:46:37,148 adding 'jcvi-1.1.2.dist-info/METADATA' 2021-07-28T19:46:37,149 adding 'jcvi-1.1.2.dist-info/WHEEL' 2021-07-28T19:46:37,150 adding 'jcvi-1.1.2.dist-info/top_level.txt' 2021-07-28T19:46:37,153 adding 'jcvi-1.1.2.dist-info/RECORD' 2021-07-28T19:46:37,173 removing build/bdist.linux-armv7l/wheel 2021-07-28T19:46:37,477 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T19:46:37,514 Created wheel for jcvi: filename=jcvi-1.1.2-cp39-cp39-linux_armv7l.whl size=1237782 sha256=3f244bf38aece419a6edc20d62e9e2e044ece2309cf10b6be54d962224d47553 2021-07-28T19:46:37,514 Stored in directory: /tmp/pip-ephem-wheel-cache-xupoui79/wheels/a4/0d/ff/14caf5030edebea45f7bf5d0c332a17a3f6db98db114712774 2021-07-28T19:46:37,530 Successfully built jcvi 2021-07-28T19:46:37,579 Removed build tracker: '/tmp/pip-req-tracker-xsjrqlup'