2021-07-28T19:47:32,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-u_p_fbv5 2021-07-28T19:47:32,164 Created temporary directory: /tmp/pip-req-tracker-o_wwjmpr 2021-07-28T19:47:32,165 Initialized build tracking at /tmp/pip-req-tracker-o_wwjmpr 2021-07-28T19:47:32,165 Created build tracker: /tmp/pip-req-tracker-o_wwjmpr 2021-07-28T19:47:32,165 Entered build tracker: /tmp/pip-req-tracker-o_wwjmpr 2021-07-28T19:47:32,166 Created temporary directory: /tmp/pip-wheel-fzwnv2iz 2021-07-28T19:47:32,197 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T19:47:32,197 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T19:47:32,198 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T19:47:32,198 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T19:47:32,198 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T19:47:32,201 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T19:47:32,348 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T19:47:32,348 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T19:47:32,348 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T19:47:32,349 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T19:47:32,349 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T19:47:32,349 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T19:47:32,349 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T19:47:32,350 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T19:47:32,350 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T19:47:32,350 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T19:47:32,351 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T19:47:32,351 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T19:47:32,351 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T19:47:32,351 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T19:47:32,352 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T19:47:32,352 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T19:47:32,352 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T19:47:32,353 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T19:47:32,379 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T19:47:32,398 Collecting jcvi==1.1.3 2021-07-28T19:47:32,399 Created temporary directory: /tmp/pip-unpack-zzjqjkp_ 2021-07-28T19:47:32,808 Downloading jcvi-1.1.3.tar.gz (820 kB) 2021-07-28T19:47:33,540 Added jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 to build tracker '/tmp/pip-req-tracker-o_wwjmpr' 2021-07-28T19:47:33,541 Running setup.py (path:/tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e/setup.py) egg_info for package jcvi 2021-07-28T19:47:33,542 Created temporary directory: /tmp/pip-pip-egg-info-odp1qx3n 2021-07-28T19:47:33,542 Running command python setup.py egg_info 2021-07-28T19:47:34,944 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.3' to '1.1.3' 2021-07-28T19:47:34,944 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:47:34,993 running egg_info 2021-07-28T19:47:34,995 creating /tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info 2021-07-28T19:47:34,996 writing /tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/PKG-INFO 2021-07-28T19:47:34,999 writing dependency_links to /tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/dependency_links.txt 2021-07-28T19:47:35,002 writing requirements to /tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/requires.txt 2021-07-28T19:47:35,003 writing top-level names to /tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/top_level.txt 2021-07-28T19:47:35,004 writing manifest file '/tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:35,029 reading manifest file '/tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:35,031 reading manifest template 'MANIFEST.in' 2021-07-28T19:47:35,035 adding license file 'LICENSE' 2021-07-28T19:47:35,044 writing manifest file '/tmp/pip-pip-egg-info-odp1qx3n/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:35,148 Source in /tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e has version 1.1.3, which satisfies requirement jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 2021-07-28T19:47:35,149 Removed jcvi==1.1.3 from https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 from build tracker '/tmp/pip-req-tracker-o_wwjmpr' 2021-07-28T19:47:35,154 Created temporary directory: /tmp/pip-unpack-ojzo27gp 2021-07-28T19:47:35,154 Building wheels for collected packages: jcvi 2021-07-28T19:47:35,159 Created temporary directory: /tmp/pip-wheel-ucvbjafx 2021-07-28T19:47:35,160 Building wheel for jcvi (setup.py): started 2021-07-28T19:47:35,160 Destination directory: /tmp/pip-wheel-ucvbjafx 2021-07-28T19:47:35,160 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ucvbjafx 2021-07-28T19:47:36,513 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.3' to '1.1.3' 2021-07-28T19:47:36,514 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:47:36,575 running bdist_wheel 2021-07-28T19:47:36,579 running build 2021-07-28T19:47:36,579 running build_py 2021-07-28T19:47:36,585 creating build 2021-07-28T19:47:36,585 creating build/lib.linux-armv7l-3.9 2021-07-28T19:47:36,585 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:36,587 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:36,588 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:36,591 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,591 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,594 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,596 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,598 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,601 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,603 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,605 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,607 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,608 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,611 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,613 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,616 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:36,620 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,621 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,623 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,626 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,628 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,632 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,634 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,635 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,637 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,640 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,644 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:36,648 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,649 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,652 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,655 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,658 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,661 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,663 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,668 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,670 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,672 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,675 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,677 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,679 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,682 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,684 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,687 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,690 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,692 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:36,697 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,698 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,701 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,703 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,706 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,708 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,711 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,714 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,716 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,718 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,720 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,723 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,725 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,727 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,730 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,733 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,734 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,736 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,739 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,742 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,745 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,748 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,751 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,754 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:36,758 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,758 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,761 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,764 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,767 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,769 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,771 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,773 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,775 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,778 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,781 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,785 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,789 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,790 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,793 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,796 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,798 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,801 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,804 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,806 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,809 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,813 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,816 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,820 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,823 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,826 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,829 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,832 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:36,835 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,836 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,840 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,842 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,844 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,847 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,848 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,851 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,852 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,855 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,857 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,860 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:36,864 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,865 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,867 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,869 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,871 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,873 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,876 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,883 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,885 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,887 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,890 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,891 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,894 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,896 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,898 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,900 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,901 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,903 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,907 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,909 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,912 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,915 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,920 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,922 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,924 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,928 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,930 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,932 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,935 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,939 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,941 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:36,945 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,945 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,948 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,950 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,953 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,957 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,960 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,961 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,964 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,966 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,967 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,970 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,973 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,976 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,978 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,979 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,981 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,983 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,986 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,988 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,991 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,993 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,996 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,998 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:36,999 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:37,002 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:37,005 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:37,007 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:37,010 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,010 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,013 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,017 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,019 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,021 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,023 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,024 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,027 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,029 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,032 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,035 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,037 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:37,040 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,041 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,044 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,046 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,048 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,050 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,052 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,054 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,056 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,057 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,060 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,062 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,063 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,066 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:37,069 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,071 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,072 running egg_info 2021-07-28T19:47:37,083 writing jcvi.egg-info/PKG-INFO 2021-07-28T19:47:37,085 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T19:47:37,087 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T19:47:37,088 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T19:47:37,108 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:37,114 reading manifest template 'MANIFEST.in' 2021-07-28T19:47:37,117 adding license file 'LICENSE' 2021-07-28T19:47:37,150 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:37,157 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:37,159 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:37,161 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,164 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,170 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,172 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,175 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,178 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,180 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,183 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,185 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,187 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,191 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,194 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:37,213 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T19:47:37,214 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.3' 2021-07-28T19:47:37,215 running build_ext 2021-07-28T19:47:37,275 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T19:47:37,886 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e/jcvi/assembly/chic.pyx 2021-07-28T19:47:37,886 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:47:40,758 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T19:47:40,765 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-fzwnv2iz/jcvi_9cdcfdc828b047c4bbfabb563c34ac8e/jcvi/formats/cblast.pyx 2021-07-28T19:47:40,765 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:47:41,737 building 'jcvi.assembly.chic' extension 2021-07-28T19:47:41,738 creating build/temp.linux-armv7l-3.9 2021-07-28T19:47:41,738 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T19:47:41,739 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:41,739 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T19:47:42,153 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T19:47:42,154 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T19:47:42,154 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T19:47:42,154 from jcvi/assembly/chic.c:612: 2021-07-28T19:47:42,154 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T19:47:42,154 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T19:47:42,154 | ^~~~~~~ 2021-07-28T19:47:45,884 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:47:46,013 building 'jcvi.formats.cblast' extension 2021-07-28T19:47:46,014 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:46,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T19:47:55,632 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:47:55,795 installing to build/bdist.linux-armv7l/wheel 2021-07-28T19:47:55,795 running install 2021-07-28T19:47:55,796 running install_lib 2021-07-28T19:47:55,801 creating build/bdist.linux-armv7l 2021-07-28T19:47:55,801 creating build/bdist.linux-armv7l/wheel 2021-07-28T19:47:55,803 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:47:55,804 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,805 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,808 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,810 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,813 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,815 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,817 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,819 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,822 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,824 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,828 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,831 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,834 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:47:55,837 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,838 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,840 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,843 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,845 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,849 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,850 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,852 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,854 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,857 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,860 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:47:55,864 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,864 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,867 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,870 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,872 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,875 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,877 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,881 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,883 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,886 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,888 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,890 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,892 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,895 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,897 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,900 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,903 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,905 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:47:55,909 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,910 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,913 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,915 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,918 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,921 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,924 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,927 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,929 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,931 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,933 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,936 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,938 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,940 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,943 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,945 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,947 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,950 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,952 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,955 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,958 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,960 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,963 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,966 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:47:55,968 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:47:55,971 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,972 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,974 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,978 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,980 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,982 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,984 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,986 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,988 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,990 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,992 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:55,995 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,000 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,004 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,005 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,007 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,010 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,013 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,016 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,018 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,020 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,023 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,026 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,029 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,033 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,040 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,043 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,045 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,048 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,050 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:47:56,053 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,054 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,058 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,060 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,062 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,065 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,066 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,069 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,070 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,073 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,076 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,078 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:47:56,082 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,083 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,085 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,087 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,090 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,092 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,095 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,100 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,103 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,126 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,128 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,131 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,133 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,136 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,139 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,141 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,144 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,146 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,148 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,153 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,156 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,159 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,162 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,167 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,171 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,174 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,176 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,180 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,183 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,185 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,188 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,193 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,195 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:47:56,198 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,199 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,202 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,205 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,208 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,212 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,215 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,217 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,219 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,221 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,223 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,227 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,230 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,233 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,236 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,237 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,240 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,241 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,243 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,246 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,249 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,251 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,254 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,256 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,258 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,261 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,264 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,266 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:47:56,268 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:47:56,271 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,272 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,274 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,278 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,281 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,283 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,285 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,287 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,290 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,293 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,296 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,298 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,301 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:47:56,304 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,305 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,307 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,311 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,312 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,315 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,318 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,320 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,323 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,328 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,330 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,331 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,333 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,336 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,338 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,341 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,345 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:47:56,347 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,349 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,351 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,354 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,356 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,358 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,360 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,362 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,365 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,367 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,370 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:47:56,373 running install_egg_info 2021-07-28T19:47:56,383 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.3-py3.9.egg-info 2021-07-28T19:47:56,398 running install_scripts 2021-07-28T19:47:56,466 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T19:47:56,471 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.3.dist-info/WHEEL 2021-07-28T19:47:56,473 creating '/tmp/pip-wheel-ucvbjafx/jcvi-1.1.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T19:47:56,476 adding 'jcvi/__init__.py' 2021-07-28T19:47:56,477 adding 'jcvi/_version.py' 2021-07-28T19:47:56,479 adding 'jcvi/algorithms/__init__.py' 2021-07-28T19:47:56,480 adding 'jcvi/algorithms/__main__.py' 2021-07-28T19:47:56,482 adding 'jcvi/algorithms/ec.py' 2021-07-28T19:47:56,484 adding 'jcvi/algorithms/formula.py' 2021-07-28T19:47:56,486 adding 'jcvi/algorithms/graph.py' 2021-07-28T19:47:56,488 adding 'jcvi/algorithms/lis.py' 2021-07-28T19:47:56,492 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T19:47:56,494 adding 'jcvi/algorithms/matrix.py' 2021-07-28T19:47:56,495 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T19:47:56,497 adding 'jcvi/algorithms/ml.py' 2021-07-28T19:47:56,498 adding 'jcvi/algorithms/supermap.py' 2021-07-28T19:47:56,500 adding 'jcvi/algorithms/tsp.py' 2021-07-28T19:47:56,502 adding 'jcvi/annotation/__init__.py' 2021-07-28T19:47:56,503 adding 'jcvi/annotation/__main__.py' 2021-07-28T19:47:56,506 adding 'jcvi/annotation/ahrd.py' 2021-07-28T19:47:56,508 adding 'jcvi/annotation/automaton.py' 2021-07-28T19:47:56,510 adding 'jcvi/annotation/depth.py' 2021-07-28T19:47:56,511 adding 'jcvi/annotation/evm.py' 2021-07-28T19:47:56,514 adding 'jcvi/annotation/maker.py' 2021-07-28T19:47:56,516 adding 'jcvi/annotation/pasa.py' 2021-07-28T19:47:56,519 adding 'jcvi/annotation/qc.py' 2021-07-28T19:47:56,525 adding 'jcvi/annotation/reformat.py' 2021-07-28T19:47:56,527 adding 'jcvi/annotation/stats.py' 2021-07-28T19:47:56,529 adding 'jcvi/annotation/train.py' 2021-07-28T19:47:56,531 adding 'jcvi/apps/__init__.py' 2021-07-28T19:47:56,532 adding 'jcvi/apps/__main__.py' 2021-07-28T19:47:56,535 adding 'jcvi/apps/align.py' 2021-07-28T19:47:56,544 adding 'jcvi/apps/base.py' 2021-07-28T19:47:56,547 adding 'jcvi/apps/biomart.py' 2021-07-28T19:47:56,548 adding 'jcvi/apps/blastplus.py' 2021-07-28T19:47:56,550 adding 'jcvi/apps/bowtie.py' 2021-07-28T19:47:56,551 adding 'jcvi/apps/bwa.py' 2021-07-28T19:47:56,553 adding 'jcvi/apps/cap3.py' 2021-07-28T19:47:56,555 adding 'jcvi/apps/cdhit.py' 2021-07-28T19:47:56,556 adding 'jcvi/apps/emboss.py' 2021-07-28T19:47:56,559 adding 'jcvi/apps/fetch.py' 2021-07-28T19:47:56,562 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T19:47:56,564 adding 'jcvi/apps/gmap.py' 2021-07-28T19:47:56,567 adding 'jcvi/apps/grid.py' 2021-07-28T19:47:56,572 adding 'jcvi/apps/ks.py' 2021-07-28T19:47:56,574 adding 'jcvi/apps/lastz.py' 2021-07-28T19:47:56,575 adding 'jcvi/apps/mask.py' 2021-07-28T19:47:56,580 adding 'jcvi/apps/phylo.py' 2021-07-28T19:47:56,582 adding 'jcvi/apps/r.py' 2021-07-28T19:47:56,583 adding 'jcvi/apps/restriction.py' 2021-07-28T19:47:56,585 adding 'jcvi/apps/script.py' 2021-07-28T19:47:56,586 adding 'jcvi/apps/softlink.py' 2021-07-28T19:47:56,588 adding 'jcvi/apps/tesseract.py' 2021-07-28T19:47:56,592 adding 'jcvi/apps/uclust.py' 2021-07-28T19:47:56,594 adding 'jcvi/apps/uniprot.py' 2021-07-28T19:47:56,596 adding 'jcvi/apps/vecscreen.py' 2021-07-28T19:47:56,598 adding 'jcvi/assembly/__init__.py' 2021-07-28T19:47:56,599 adding 'jcvi/assembly/__main__.py' 2021-07-28T19:47:56,609 adding 'jcvi/assembly/allmaps.py' 2021-07-28T19:47:56,612 adding 'jcvi/assembly/allpaths.py' 2021-07-28T19:47:56,614 adding 'jcvi/assembly/amos.py' 2021-07-28T19:47:56,616 adding 'jcvi/assembly/automaton.py' 2021-07-28T19:47:56,618 adding 'jcvi/assembly/bambus.py' 2021-07-28T19:47:56,619 adding 'jcvi/assembly/base.py' 2021-07-28T19:47:56,624 adding 'jcvi/assembly/ca.py' 2021-07-28T19:47:56,673 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:47:56,676 adding 'jcvi/assembly/chic.pyx' 2021-07-28T19:47:56,677 adding 'jcvi/assembly/coverage.py' 2021-07-28T19:47:56,679 adding 'jcvi/assembly/gaps.py' 2021-07-28T19:47:56,682 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T19:47:56,687 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T19:47:56,695 adding 'jcvi/assembly/hic.py' 2021-07-28T19:47:56,701 adding 'jcvi/assembly/kmer.py' 2021-07-28T19:47:56,702 adding 'jcvi/assembly/meraculous.py' 2021-07-28T19:47:56,705 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T19:47:56,709 adding 'jcvi/assembly/patch.py' 2021-07-28T19:47:56,711 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T19:47:56,714 adding 'jcvi/assembly/postprocess.py' 2021-07-28T19:47:56,717 adding 'jcvi/assembly/preprocess.py' 2021-07-28T19:47:56,719 adding 'jcvi/assembly/sim.py' 2021-07-28T19:47:56,721 adding 'jcvi/assembly/soap.py' 2021-07-28T19:47:56,723 adding 'jcvi/assembly/sspace.py' 2021-07-28T19:47:56,725 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T19:47:56,727 adding 'jcvi/assembly/trinity.py' 2021-07-28T19:47:56,729 adding 'jcvi/assembly/unitig.py' 2021-07-28T19:47:56,731 adding 'jcvi/compara/__init__.py' 2021-07-28T19:47:56,732 adding 'jcvi/compara/__main__.py' 2021-07-28T19:47:56,734 adding 'jcvi/compara/blastfilter.py' 2021-07-28T19:47:56,738 adding 'jcvi/compara/catalog.py' 2021-07-28T19:47:56,742 adding 'jcvi/compara/fractionation.py' 2021-07-28T19:47:56,744 adding 'jcvi/compara/pad.py' 2021-07-28T19:47:56,745 adding 'jcvi/compara/phylogeny.py' 2021-07-28T19:47:56,747 adding 'jcvi/compara/quota.py' 2021-07-28T19:47:56,749 adding 'jcvi/compara/reconstruct.py' 2021-07-28T19:47:56,751 adding 'jcvi/compara/synfind.py' 2021-07-28T19:47:56,760 adding 'jcvi/compara/synteny.py' 2021-07-28T19:47:56,763 adding 'jcvi/formats/__init__.py' 2021-07-28T19:47:56,764 adding 'jcvi/formats/__main__.py' 2021-07-28T19:47:56,766 adding 'jcvi/formats/ace.py' 2021-07-28T19:47:56,774 adding 'jcvi/formats/agp.py' 2021-07-28T19:47:56,779 adding 'jcvi/formats/base.py' 2021-07-28T19:47:56,790 adding 'jcvi/formats/bed.py' 2021-07-28T19:47:56,796 adding 'jcvi/formats/blast.py' 2021-07-28T19:47:56,798 adding 'jcvi/formats/btab.py' 2021-07-28T19:47:56,935 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:47:56,942 adding 'jcvi/formats/cblast.pyx' 2021-07-28T19:47:56,944 adding 'jcvi/formats/cdt.py' 2021-07-28T19:47:56,946 adding 'jcvi/formats/chain.py' 2021-07-28T19:47:56,947 adding 'jcvi/formats/contig.py' 2021-07-28T19:47:56,949 adding 'jcvi/formats/coords.py' 2021-07-28T19:47:56,951 adding 'jcvi/formats/excel.py' 2021-07-28T19:47:56,962 adding 'jcvi/formats/fasta.py' 2021-07-28T19:47:56,966 adding 'jcvi/formats/fastq.py' 2021-07-28T19:47:56,968 adding 'jcvi/formats/fpc.py' 2021-07-28T19:47:56,970 adding 'jcvi/formats/genbank.py' 2021-07-28T19:47:56,985 adding 'jcvi/formats/gff.py' 2021-07-28T19:47:56,987 adding 'jcvi/formats/html.py' 2021-07-28T19:47:56,989 adding 'jcvi/formats/maf.py' 2021-07-28T19:47:56,990 adding 'jcvi/formats/obo.py' 2021-07-28T19:47:56,991 adding 'jcvi/formats/paf.py' 2021-07-28T19:47:56,992 adding 'jcvi/formats/pdf.py' 2021-07-28T19:47:56,994 adding 'jcvi/formats/posmap.py' 2021-07-28T19:47:56,996 adding 'jcvi/formats/psl.py' 2021-07-28T19:47:56,998 adding 'jcvi/formats/pyblast.py' 2021-07-28T19:47:57,001 adding 'jcvi/formats/sam.py' 2021-07-28T19:47:57,003 adding 'jcvi/formats/sbt.py' 2021-07-28T19:47:57,005 adding 'jcvi/formats/sizes.py' 2021-07-28T19:47:57,009 adding 'jcvi/formats/vcf.py' 2021-07-28T19:47:57,011 adding 'jcvi/graphics/__init__.py' 2021-07-28T19:47:57,012 adding 'jcvi/graphics/__main__.py' 2021-07-28T19:47:57,014 adding 'jcvi/graphics/align.py' 2021-07-28T19:47:57,017 adding 'jcvi/graphics/assembly.py' 2021-07-28T19:47:57,021 adding 'jcvi/graphics/base.py' 2021-07-28T19:47:57,023 adding 'jcvi/graphics/blastplot.py' 2021-07-28T19:47:57,026 adding 'jcvi/graphics/chromosome.py' 2021-07-28T19:47:57,028 adding 'jcvi/graphics/coverage.py' 2021-07-28T19:47:57,031 adding 'jcvi/graphics/dotplot.py' 2021-07-28T19:47:57,034 adding 'jcvi/graphics/glyph.py' 2021-07-28T19:47:57,038 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T19:47:57,039 adding 'jcvi/graphics/graph.py' 2021-07-28T19:47:57,041 adding 'jcvi/graphics/heatmap.py' 2021-07-28T19:47:57,043 adding 'jcvi/graphics/histogram.py' 2021-07-28T19:47:57,045 adding 'jcvi/graphics/karyotype.py' 2021-07-28T19:47:57,050 adding 'jcvi/graphics/landscape.py' 2021-07-28T19:47:57,051 adding 'jcvi/graphics/logo.py' 2021-07-28T19:47:57,053 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T19:47:57,056 adding 'jcvi/graphics/synteny.py' 2021-07-28T19:47:57,058 adding 'jcvi/graphics/table.py' 2021-07-28T19:47:57,061 adding 'jcvi/graphics/tree.py' 2021-07-28T19:47:57,063 adding 'jcvi/graphics/wheel.py' 2021-07-28T19:47:57,065 adding 'jcvi/graphics/whisker.py' 2021-07-28T19:47:57,067 adding 'jcvi/projects/__init__.py' 2021-07-28T19:47:57,068 adding 'jcvi/projects/__main__.py' 2021-07-28T19:47:57,071 adding 'jcvi/projects/age.py' 2021-07-28T19:47:57,073 adding 'jcvi/projects/alfalfa.py' 2021-07-28T19:47:57,076 adding 'jcvi/projects/allmaps.py' 2021-07-28T19:47:57,078 adding 'jcvi/projects/bites.py' 2021-07-28T19:47:57,080 adding 'jcvi/projects/heterosis.py' 2021-07-28T19:47:57,082 adding 'jcvi/projects/ies.py' 2021-07-28T19:47:57,086 adding 'jcvi/projects/misc.py' 2021-07-28T19:47:57,089 adding 'jcvi/projects/napus.py' 2021-07-28T19:47:57,092 adding 'jcvi/projects/pineapple.py' 2021-07-28T19:47:57,093 adding 'jcvi/projects/pistachio.py' 2021-07-28T19:47:57,102 adding 'jcvi/projects/str.py' 2021-07-28T19:47:57,106 adding 'jcvi/projects/sugarcane.py' 2021-07-28T19:47:57,109 adding 'jcvi/projects/synfind.py' 2021-07-28T19:47:57,112 adding 'jcvi/projects/tgbs.py' 2021-07-28T19:47:57,114 adding 'jcvi/projects/vanilla.py' 2021-07-28T19:47:57,116 adding 'jcvi/utils/__init__.py' 2021-07-28T19:47:57,117 adding 'jcvi/utils/__main__.py' 2021-07-28T19:47:57,121 adding 'jcvi/utils/aws.py' 2021-07-28T19:47:57,123 adding 'jcvi/utils/cbook.py' 2021-07-28T19:47:57,125 adding 'jcvi/utils/db.py' 2021-07-28T19:47:57,126 adding 'jcvi/utils/ez_setup.py' 2021-07-28T19:47:57,128 adding 'jcvi/utils/grouper.py' 2021-07-28T19:47:57,130 adding 'jcvi/utils/iter.py' 2021-07-28T19:47:57,132 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T19:47:57,134 adding 'jcvi/utils/range.py' 2021-07-28T19:47:57,136 adding 'jcvi/utils/table.py' 2021-07-28T19:47:57,138 adding 'jcvi/utils/taxonomy.py' 2021-07-28T19:47:57,139 adding 'jcvi/utils/webcolors.py' 2021-07-28T19:47:57,142 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T19:47:57,159 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T19:47:57,164 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T19:47:57,170 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T19:47:57,173 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T19:47:57,175 adding 'jcvi/utils/data/__init__.py' 2021-07-28T19:47:57,176 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T19:47:57,177 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T19:47:57,179 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T19:47:57,180 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T19:47:57,186 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T19:47:57,189 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T19:47:57,190 adding 'jcvi/utils/data/instance.json' 2021-07-28T19:47:57,192 adding 'jcvi/variation/__init__.py' 2021-07-28T19:47:57,193 adding 'jcvi/variation/__main__.py' 2021-07-28T19:47:57,198 adding 'jcvi/variation/cnv.py' 2021-07-28T19:47:57,200 adding 'jcvi/variation/deconvolute.py' 2021-07-28T19:47:57,201 adding 'jcvi/variation/delly.py' 2021-07-28T19:47:57,203 adding 'jcvi/variation/impute.py' 2021-07-28T19:47:57,205 adding 'jcvi/variation/phase.py' 2021-07-28T19:47:57,207 adding 'jcvi/variation/snp.py' 2021-07-28T19:47:57,214 adding 'jcvi/variation/str.py' 2021-07-28T19:47:57,216 adding 'jcvi/variation/tassel.py' 2021-07-28T19:47:57,218 adding 'jcvi-1.1.3.dist-info/LICENSE' 2021-07-28T19:47:57,219 adding 'jcvi-1.1.3.dist-info/METADATA' 2021-07-28T19:47:57,220 adding 'jcvi-1.1.3.dist-info/WHEEL' 2021-07-28T19:47:57,221 adding 'jcvi-1.1.3.dist-info/top_level.txt' 2021-07-28T19:47:57,225 adding 'jcvi-1.1.3.dist-info/RECORD' 2021-07-28T19:47:57,248 removing build/bdist.linux-armv7l/wheel 2021-07-28T19:47:57,556 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T19:47:57,573 Created wheel for jcvi: filename=jcvi-1.1.3-cp39-cp39-linux_armv7l.whl size=1235276 sha256=90f675a3cba74b66c1e18f56efb0c02f20b3d3e16af2f59383c2bb9c2c238f73 2021-07-28T19:47:57,573 Stored in directory: /tmp/pip-ephem-wheel-cache-u_p_fbv5/wheels/37/7f/b8/033c5872995231009eccf31f944fc928425f220e7639bdbdd3 2021-07-28T19:47:57,590 Successfully built jcvi 2021-07-28T19:47:57,637 Removed build tracker: '/tmp/pip-req-tracker-o_wwjmpr'