2021-07-28T19:47:45,685 Created temporary directory: /tmp/pip-ephem-wheel-cache-qfh3qzps 2021-07-28T19:47:45,688 Created temporary directory: /tmp/pip-req-tracker-nx9anlb5 2021-07-28T19:47:45,689 Initialized build tracking at /tmp/pip-req-tracker-nx9anlb5 2021-07-28T19:47:45,689 Created build tracker: /tmp/pip-req-tracker-nx9anlb5 2021-07-28T19:47:45,689 Entered build tracker: /tmp/pip-req-tracker-nx9anlb5 2021-07-28T19:47:45,690 Created temporary directory: /tmp/pip-wheel-ml51ngze 2021-07-28T19:47:45,721 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T19:47:45,721 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T19:47:45,722 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T19:47:45,722 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T19:47:45,722 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T19:47:45,725 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T19:47:45,858 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T19:47:45,859 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T19:47:45,859 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T19:47:45,859 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T19:47:45,860 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T19:47:45,860 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T19:47:45,860 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T19:47:45,860 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T19:47:45,861 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T19:47:45,861 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T19:47:45,861 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T19:47:45,861 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T19:47:45,862 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T19:47:45,862 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T19:47:45,862 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T19:47:45,863 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T19:47:45,863 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T19:47:45,863 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T19:47:45,888 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T19:47:45,905 Collecting jcvi==1.1.4 2021-07-28T19:47:45,906 Created temporary directory: /tmp/pip-unpack-3z1nxz36 2021-07-28T19:47:46,526 Downloading jcvi-1.1.4.tar.gz (820 kB) 2021-07-28T19:47:47,350 Added jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 to build tracker '/tmp/pip-req-tracker-nx9anlb5' 2021-07-28T19:47:47,351 Running setup.py (path:/tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b/setup.py) egg_info for package jcvi 2021-07-28T19:47:47,352 Created temporary directory: /tmp/pip-pip-egg-info-8g06gpg1 2021-07-28T19:47:47,352 Running command python setup.py egg_info 2021-07-28T19:47:48,777 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.4' to '1.1.4' 2021-07-28T19:47:48,778 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:47:48,825 running egg_info 2021-07-28T19:47:48,828 creating /tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info 2021-07-28T19:47:48,828 writing /tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/PKG-INFO 2021-07-28T19:47:48,832 writing dependency_links to /tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/dependency_links.txt 2021-07-28T19:47:48,834 writing requirements to /tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/requires.txt 2021-07-28T19:47:48,835 writing top-level names to /tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/top_level.txt 2021-07-28T19:47:48,836 writing manifest file '/tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:48,862 reading manifest file '/tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:48,864 reading manifest template 'MANIFEST.in' 2021-07-28T19:47:48,867 adding license file 'LICENSE' 2021-07-28T19:47:48,876 writing manifest file '/tmp/pip-pip-egg-info-8g06gpg1/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:48,981 Source in /tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b has version 1.1.4, which satisfies requirement jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 2021-07-28T19:47:48,982 Removed jcvi==1.1.4 from https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 from build tracker '/tmp/pip-req-tracker-nx9anlb5' 2021-07-28T19:47:48,987 Created temporary directory: /tmp/pip-unpack-m3ahr1f6 2021-07-28T19:47:48,987 Building wheels for collected packages: jcvi 2021-07-28T19:47:48,992 Created temporary directory: /tmp/pip-wheel-csoja74m 2021-07-28T19:47:48,992 Building wheel for jcvi (setup.py): started 2021-07-28T19:47:48,993 Destination directory: /tmp/pip-wheel-csoja74m 2021-07-28T19:47:48,993 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-csoja74m 2021-07-28T19:47:50,344 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.4' to '1.1.4' 2021-07-28T19:47:50,345 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:47:50,405 running bdist_wheel 2021-07-28T19:47:50,410 running build 2021-07-28T19:47:50,410 running build_py 2021-07-28T19:47:50,416 creating build 2021-07-28T19:47:50,416 creating build/lib.linux-armv7l-3.9 2021-07-28T19:47:50,417 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:50,419 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:50,420 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:47:50,423 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,424 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,426 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,429 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,431 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,433 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,435 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,437 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,439 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,442 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,446 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,449 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:47:50,453 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,453 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,457 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,460 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,463 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,465 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,467 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,469 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,470 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,472 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,475 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:47:50,479 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,480 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,482 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,485 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,488 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,490 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,492 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,494 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,496 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,499 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,501 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,503 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,505 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,507 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,509 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:47:50,513 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,514 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,517 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,519 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,522 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,524 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,527 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,529 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,533 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,535 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,538 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,541 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,544 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,545 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,548 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,553 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,555 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,557 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,558 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,561 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,564 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,566 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,571 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,575 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,577 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,579 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,582 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,584 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,586 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,588 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,592 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,596 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,597 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,601 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,604 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,606 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,608 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,609 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,612 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,614 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,616 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,619 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,621 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,624 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:47:50,628 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,629 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,631 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,635 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,637 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,640 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,643 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,646 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,650 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,653 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,655 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,657 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,660 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,662 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,664 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,667 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,670 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,673 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,675 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,677 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,678 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,680 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,683 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,685 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,688 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,690 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,693 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,697 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,701 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,702 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,704 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,706 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,708 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,710 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,711 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,714 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,716 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,719 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,721 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,724 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,726 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:47:50,730 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,731 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,734 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,736 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,740 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,743 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,745 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,747 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,750 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,752 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,754 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,756 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,758 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,760 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,762 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,764 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,767 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,769 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:47:50,773 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,774 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,776 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,779 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,781 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,783 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,786 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,788 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,790 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,792 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,795 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,796 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,799 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,801 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,803 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,806 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,808 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,811 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,813 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,816 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,818 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,820 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,823 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,826 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:47:50,829 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,830 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,833 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,835 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,837 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,839 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,842 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,844 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,846 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,848 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,851 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,853 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,855 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,857 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,859 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,861 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,863 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,864 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,867 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,868 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,871 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,873 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,876 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,879 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,881 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,884 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,887 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,889 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:47:50,892 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:50,893 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:50,894 running egg_info 2021-07-28T19:47:50,904 writing jcvi.egg-info/PKG-INFO 2021-07-28T19:47:50,907 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T19:47:50,909 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T19:47:50,910 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T19:47:50,930 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:50,936 reading manifest template 'MANIFEST.in' 2021-07-28T19:47:50,940 adding license file 'LICENSE' 2021-07-28T19:47:50,981 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:47:50,987 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:50,989 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:50,991 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:50,994 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:50,998 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,001 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,006 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,010 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,012 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,014 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,017 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,019 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,023 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,026 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:47:51,045 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T19:47:51,046 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.4' 2021-07-28T19:47:51,046 running build_ext 2021-07-28T19:47:51,106 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T19:47:51,719 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b/jcvi/assembly/chic.pyx 2021-07-28T19:47:51,719 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:47:54,675 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T19:47:54,682 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ml51ngze/jcvi_e2c0db39141a434cbbf6bddfd631411b/jcvi/formats/cblast.pyx 2021-07-28T19:47:54,682 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:47:55,656 building 'jcvi.assembly.chic' extension 2021-07-28T19:47:55,657 creating build/temp.linux-armv7l-3.9 2021-07-28T19:47:55,657 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T19:47:55,658 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:47:55,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T19:47:56,083 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T19:47:56,083 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T19:47:56,084 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T19:47:56,084 from jcvi/assembly/chic.c:612: 2021-07-28T19:47:56,084 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T19:47:56,084 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T19:47:56,084 | ^~~~~~~ 2021-07-28T19:47:59,860 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:47:59,996 building 'jcvi.formats.cblast' extension 2021-07-28T19:47:59,997 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:47:59,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T19:48:09,624 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:48:09,782 installing to build/bdist.linux-armv7l/wheel 2021-07-28T19:48:09,783 running install 2021-07-28T19:48:09,784 running install_lib 2021-07-28T19:48:09,788 creating build/bdist.linux-armv7l 2021-07-28T19:48:09,789 creating build/bdist.linux-armv7l/wheel 2021-07-28T19:48:09,791 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:48:09,793 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,794 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,797 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,799 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,802 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,803 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,806 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,807 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,810 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,813 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,817 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,819 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:48:09,823 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,823 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,826 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,830 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,833 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,836 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,838 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,840 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,841 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,844 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,846 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:48:09,850 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:48:09,853 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,854 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,856 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,859 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,862 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,864 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,866 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,868 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,871 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,872 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,875 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,877 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,880 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,885 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,888 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,891 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,892 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,895 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,898 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,901 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,904 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,907 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:48:09,909 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,911 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,914 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,916 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,919 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,920 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,922 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:48:09,926 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,927 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,929 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,931 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,936 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,938 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,941 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,943 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,948 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,950 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,953 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,955 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,958 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,960 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,963 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,985 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,989 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,991 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,993 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,994 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,996 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:09,998 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,001 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,007 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,011 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,014 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,017 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,019 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,022 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,024 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,027 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,029 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,032 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:48:10,036 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,037 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,041 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,044 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,046 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,048 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,050 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,052 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,054 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,057 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,059 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,063 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,066 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:48:10,070 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,071 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,074 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,077 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,079 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,082 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,086 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,088 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,093 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,096 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,099 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,102 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,110 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,112 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,114 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,117 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,119 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,122 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,125 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,127 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,130 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,132 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,133 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,135 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,138 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,141 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,144 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,146 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,149 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,154 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:48:10,157 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,158 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,160 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,162 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,164 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,166 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,168 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,170 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,173 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,175 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,178 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,181 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,200 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:48:10,203 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:48:10,207 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,208 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,213 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,216 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,223 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,226 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,229 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,231 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,234 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,238 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,240 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,243 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,245 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,247 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,249 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,251 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,254 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,257 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:48:10,261 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,261 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,264 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,266 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,268 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,271 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,273 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,276 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,278 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,280 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,283 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,285 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,288 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,290 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,292 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,295 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,297 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,300 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,302 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,305 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,308 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,310 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,313 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,316 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:48:10,319 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,320 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,322 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,324 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,327 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,329 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,333 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,335 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,338 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,340 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,342 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,345 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,348 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,351 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,353 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,356 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,358 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,360 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,363 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,365 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,369 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,372 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,376 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,379 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,381 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,385 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,390 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,392 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:48:10,395 running install_egg_info 2021-07-28T19:48:10,404 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.4-py3.9.egg-info 2021-07-28T19:48:10,418 running install_scripts 2021-07-28T19:48:10,482 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T19:48:10,486 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.4.dist-info/WHEEL 2021-07-28T19:48:10,489 creating '/tmp/pip-wheel-csoja74m/jcvi-1.1.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T19:48:10,492 adding 'jcvi/__init__.py' 2021-07-28T19:48:10,493 adding 'jcvi/_version.py' 2021-07-28T19:48:10,495 adding 'jcvi/algorithms/__init__.py' 2021-07-28T19:48:10,497 adding 'jcvi/algorithms/__main__.py' 2021-07-28T19:48:10,499 adding 'jcvi/algorithms/ec.py' 2021-07-28T19:48:10,501 adding 'jcvi/algorithms/formula.py' 2021-07-28T19:48:10,504 adding 'jcvi/algorithms/graph.py' 2021-07-28T19:48:10,506 adding 'jcvi/algorithms/lis.py' 2021-07-28T19:48:10,510 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T19:48:10,512 adding 'jcvi/algorithms/matrix.py' 2021-07-28T19:48:10,514 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T19:48:10,515 adding 'jcvi/algorithms/ml.py' 2021-07-28T19:48:10,517 adding 'jcvi/algorithms/supermap.py' 2021-07-28T19:48:10,519 adding 'jcvi/algorithms/tsp.py' 2021-07-28T19:48:10,521 adding 'jcvi/annotation/__init__.py' 2021-07-28T19:48:10,523 adding 'jcvi/annotation/__main__.py' 2021-07-28T19:48:10,526 adding 'jcvi/annotation/ahrd.py' 2021-07-28T19:48:10,528 adding 'jcvi/annotation/automaton.py' 2021-07-28T19:48:10,530 adding 'jcvi/annotation/depth.py' 2021-07-28T19:48:10,532 adding 'jcvi/annotation/evm.py' 2021-07-28T19:48:10,535 adding 'jcvi/annotation/maker.py' 2021-07-28T19:48:10,538 adding 'jcvi/annotation/pasa.py' 2021-07-28T19:48:10,541 adding 'jcvi/annotation/qc.py' 2021-07-28T19:48:10,547 adding 'jcvi/annotation/reformat.py' 2021-07-28T19:48:10,550 adding 'jcvi/annotation/stats.py' 2021-07-28T19:48:10,552 adding 'jcvi/annotation/train.py' 2021-07-28T19:48:10,554 adding 'jcvi/apps/__init__.py' 2021-07-28T19:48:10,556 adding 'jcvi/apps/__main__.py' 2021-07-28T19:48:10,558 adding 'jcvi/apps/align.py' 2021-07-28T19:48:10,567 adding 'jcvi/apps/base.py' 2021-07-28T19:48:10,571 adding 'jcvi/apps/biomart.py' 2021-07-28T19:48:10,572 adding 'jcvi/apps/blastplus.py' 2021-07-28T19:48:10,574 adding 'jcvi/apps/bowtie.py' 2021-07-28T19:48:10,576 adding 'jcvi/apps/bwa.py' 2021-07-28T19:48:10,578 adding 'jcvi/apps/cap3.py' 2021-07-28T19:48:10,580 adding 'jcvi/apps/cdhit.py' 2021-07-28T19:48:10,582 adding 'jcvi/apps/emboss.py' 2021-07-28T19:48:10,585 adding 'jcvi/apps/fetch.py' 2021-07-28T19:48:10,589 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T19:48:10,591 adding 'jcvi/apps/gmap.py' 2021-07-28T19:48:10,594 adding 'jcvi/apps/grid.py' 2021-07-28T19:48:10,599 adding 'jcvi/apps/ks.py' 2021-07-28T19:48:10,601 adding 'jcvi/apps/lastz.py' 2021-07-28T19:48:10,603 adding 'jcvi/apps/mask.py' 2021-07-28T19:48:10,608 adding 'jcvi/apps/phylo.py' 2021-07-28T19:48:10,609 adding 'jcvi/apps/r.py' 2021-07-28T19:48:10,611 adding 'jcvi/apps/restriction.py' 2021-07-28T19:48:10,613 adding 'jcvi/apps/script.py' 2021-07-28T19:48:10,614 adding 'jcvi/apps/softlink.py' 2021-07-28T19:48:10,616 adding 'jcvi/apps/tesseract.py' 2021-07-28T19:48:10,621 adding 'jcvi/apps/uclust.py' 2021-07-28T19:48:10,623 adding 'jcvi/apps/uniprot.py' 2021-07-28T19:48:10,625 adding 'jcvi/apps/vecscreen.py' 2021-07-28T19:48:10,627 adding 'jcvi/assembly/__init__.py' 2021-07-28T19:48:10,628 adding 'jcvi/assembly/__main__.py' 2021-07-28T19:48:10,638 adding 'jcvi/assembly/allmaps.py' 2021-07-28T19:48:10,641 adding 'jcvi/assembly/allpaths.py' 2021-07-28T19:48:10,643 adding 'jcvi/assembly/amos.py' 2021-07-28T19:48:10,646 adding 'jcvi/assembly/automaton.py' 2021-07-28T19:48:10,647 adding 'jcvi/assembly/bambus.py' 2021-07-28T19:48:10,649 adding 'jcvi/assembly/base.py' 2021-07-28T19:48:10,654 adding 'jcvi/assembly/ca.py' 2021-07-28T19:48:10,701 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:48:10,704 adding 'jcvi/assembly/chic.pyx' 2021-07-28T19:48:10,706 adding 'jcvi/assembly/coverage.py' 2021-07-28T19:48:10,708 adding 'jcvi/assembly/gaps.py' 2021-07-28T19:48:10,712 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T19:48:10,717 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T19:48:10,725 adding 'jcvi/assembly/hic.py' 2021-07-28T19:48:10,731 adding 'jcvi/assembly/kmer.py' 2021-07-28T19:48:10,733 adding 'jcvi/assembly/meraculous.py' 2021-07-28T19:48:10,735 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T19:48:10,740 adding 'jcvi/assembly/patch.py' 2021-07-28T19:48:10,742 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T19:48:10,745 adding 'jcvi/assembly/postprocess.py' 2021-07-28T19:48:10,748 adding 'jcvi/assembly/preprocess.py' 2021-07-28T19:48:10,750 adding 'jcvi/assembly/sim.py' 2021-07-28T19:48:10,753 adding 'jcvi/assembly/soap.py' 2021-07-28T19:48:10,755 adding 'jcvi/assembly/sspace.py' 2021-07-28T19:48:10,758 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T19:48:10,760 adding 'jcvi/assembly/trinity.py' 2021-07-28T19:48:10,762 adding 'jcvi/assembly/unitig.py' 2021-07-28T19:48:10,764 adding 'jcvi/compara/__init__.py' 2021-07-28T19:48:10,765 adding 'jcvi/compara/__main__.py' 2021-07-28T19:48:10,766 adding 'jcvi/compara/blastfilter.py' 2021-07-28T19:48:10,771 adding 'jcvi/compara/catalog.py' 2021-07-28T19:48:10,775 adding 'jcvi/compara/fractionation.py' 2021-07-28T19:48:10,778 adding 'jcvi/compara/pad.py' 2021-07-28T19:48:10,780 adding 'jcvi/compara/phylogeny.py' 2021-07-28T19:48:10,782 adding 'jcvi/compara/quota.py' 2021-07-28T19:48:10,784 adding 'jcvi/compara/reconstruct.py' 2021-07-28T19:48:10,786 adding 'jcvi/compara/synfind.py' 2021-07-28T19:48:10,795 adding 'jcvi/compara/synteny.py' 2021-07-28T19:48:10,798 adding 'jcvi/formats/__init__.py' 2021-07-28T19:48:10,799 adding 'jcvi/formats/__main__.py' 2021-07-28T19:48:10,801 adding 'jcvi/formats/ace.py' 2021-07-28T19:48:10,808 adding 'jcvi/formats/agp.py' 2021-07-28T19:48:10,814 adding 'jcvi/formats/base.py' 2021-07-28T19:48:10,824 adding 'jcvi/formats/bed.py' 2021-07-28T19:48:10,830 adding 'jcvi/formats/blast.py' 2021-07-28T19:48:10,832 adding 'jcvi/formats/btab.py' 2021-07-28T19:48:10,967 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:48:10,974 adding 'jcvi/formats/cblast.pyx' 2021-07-28T19:48:10,975 adding 'jcvi/formats/cdt.py' 2021-07-28T19:48:10,977 adding 'jcvi/formats/chain.py' 2021-07-28T19:48:10,979 adding 'jcvi/formats/contig.py' 2021-07-28T19:48:10,981 adding 'jcvi/formats/coords.py' 2021-07-28T19:48:10,983 adding 'jcvi/formats/excel.py' 2021-07-28T19:48:10,994 adding 'jcvi/formats/fasta.py' 2021-07-28T19:48:10,999 adding 'jcvi/formats/fastq.py' 2021-07-28T19:48:11,000 adding 'jcvi/formats/fpc.py' 2021-07-28T19:48:11,003 adding 'jcvi/formats/genbank.py' 2021-07-28T19:48:11,018 adding 'jcvi/formats/gff.py' 2021-07-28T19:48:11,021 adding 'jcvi/formats/html.py' 2021-07-28T19:48:11,022 adding 'jcvi/formats/maf.py' 2021-07-28T19:48:11,023 adding 'jcvi/formats/obo.py' 2021-07-28T19:48:11,025 adding 'jcvi/formats/paf.py' 2021-07-28T19:48:11,026 adding 'jcvi/formats/pdf.py' 2021-07-28T19:48:11,028 adding 'jcvi/formats/posmap.py' 2021-07-28T19:48:11,030 adding 'jcvi/formats/psl.py' 2021-07-28T19:48:11,032 adding 'jcvi/formats/pyblast.py' 2021-07-28T19:48:11,035 adding 'jcvi/formats/sam.py' 2021-07-28T19:48:11,037 adding 'jcvi/formats/sbt.py' 2021-07-28T19:48:11,039 adding 'jcvi/formats/sizes.py' 2021-07-28T19:48:11,043 adding 'jcvi/formats/vcf.py' 2021-07-28T19:48:11,045 adding 'jcvi/graphics/__init__.py' 2021-07-28T19:48:11,046 adding 'jcvi/graphics/__main__.py' 2021-07-28T19:48:11,048 adding 'jcvi/graphics/align.py' 2021-07-28T19:48:11,051 adding 'jcvi/graphics/assembly.py' 2021-07-28T19:48:11,055 adding 'jcvi/graphics/base.py' 2021-07-28T19:48:11,057 adding 'jcvi/graphics/blastplot.py' 2021-07-28T19:48:11,060 adding 'jcvi/graphics/chromosome.py' 2021-07-28T19:48:11,062 adding 'jcvi/graphics/coverage.py' 2021-07-28T19:48:11,065 adding 'jcvi/graphics/dotplot.py' 2021-07-28T19:48:11,067 adding 'jcvi/graphics/glyph.py' 2021-07-28T19:48:11,072 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T19:48:11,073 adding 'jcvi/graphics/graph.py' 2021-07-28T19:48:11,075 adding 'jcvi/graphics/heatmap.py' 2021-07-28T19:48:11,077 adding 'jcvi/graphics/histogram.py' 2021-07-28T19:48:11,079 adding 'jcvi/graphics/karyotype.py' 2021-07-28T19:48:11,083 adding 'jcvi/graphics/landscape.py' 2021-07-28T19:48:11,085 adding 'jcvi/graphics/logo.py' 2021-07-28T19:48:11,086 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T19:48:11,089 adding 'jcvi/graphics/synteny.py' 2021-07-28T19:48:11,091 adding 'jcvi/graphics/table.py' 2021-07-28T19:48:11,094 adding 'jcvi/graphics/tree.py' 2021-07-28T19:48:11,096 adding 'jcvi/graphics/wheel.py' 2021-07-28T19:48:11,097 adding 'jcvi/graphics/whisker.py' 2021-07-28T19:48:11,099 adding 'jcvi/projects/__init__.py' 2021-07-28T19:48:11,101 adding 'jcvi/projects/__main__.py' 2021-07-28T19:48:11,104 adding 'jcvi/projects/age.py' 2021-07-28T19:48:11,105 adding 'jcvi/projects/alfalfa.py' 2021-07-28T19:48:11,108 adding 'jcvi/projects/allmaps.py' 2021-07-28T19:48:11,110 adding 'jcvi/projects/bites.py' 2021-07-28T19:48:11,111 adding 'jcvi/projects/heterosis.py' 2021-07-28T19:48:11,114 adding 'jcvi/projects/ies.py' 2021-07-28T19:48:11,117 adding 'jcvi/projects/misc.py' 2021-07-28T19:48:11,121 adding 'jcvi/projects/napus.py' 2021-07-28T19:48:11,123 adding 'jcvi/projects/pineapple.py' 2021-07-28T19:48:11,125 adding 'jcvi/projects/pistachio.py' 2021-07-28T19:48:11,133 adding 'jcvi/projects/str.py' 2021-07-28T19:48:11,137 adding 'jcvi/projects/sugarcane.py' 2021-07-28T19:48:11,140 adding 'jcvi/projects/synfind.py' 2021-07-28T19:48:11,143 adding 'jcvi/projects/tgbs.py' 2021-07-28T19:48:11,145 adding 'jcvi/projects/vanilla.py' 2021-07-28T19:48:11,147 adding 'jcvi/utils/__init__.py' 2021-07-28T19:48:11,148 adding 'jcvi/utils/__main__.py' 2021-07-28T19:48:11,152 adding 'jcvi/utils/aws.py' 2021-07-28T19:48:11,154 adding 'jcvi/utils/cbook.py' 2021-07-28T19:48:11,156 adding 'jcvi/utils/console.py' 2021-07-28T19:48:11,157 adding 'jcvi/utils/db.py' 2021-07-28T19:48:11,159 adding 'jcvi/utils/ez_setup.py' 2021-07-28T19:48:11,160 adding 'jcvi/utils/grouper.py' 2021-07-28T19:48:11,162 adding 'jcvi/utils/iter.py' 2021-07-28T19:48:11,164 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T19:48:11,167 adding 'jcvi/utils/range.py' 2021-07-28T19:48:11,168 adding 'jcvi/utils/table.py' 2021-07-28T19:48:11,170 adding 'jcvi/utils/taxonomy.py' 2021-07-28T19:48:11,171 adding 'jcvi/utils/webcolors.py' 2021-07-28T19:48:11,175 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T19:48:11,192 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T19:48:11,196 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T19:48:11,202 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T19:48:11,206 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T19:48:11,208 adding 'jcvi/utils/data/__init__.py' 2021-07-28T19:48:11,209 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T19:48:11,210 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T19:48:11,212 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T19:48:11,213 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T19:48:11,220 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T19:48:11,222 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T19:48:11,224 adding 'jcvi/utils/data/instance.json' 2021-07-28T19:48:11,226 adding 'jcvi/variation/__init__.py' 2021-07-28T19:48:11,227 adding 'jcvi/variation/__main__.py' 2021-07-28T19:48:11,232 adding 'jcvi/variation/cnv.py' 2021-07-28T19:48:11,234 adding 'jcvi/variation/deconvolute.py' 2021-07-28T19:48:11,236 adding 'jcvi/variation/delly.py' 2021-07-28T19:48:11,238 adding 'jcvi/variation/impute.py' 2021-07-28T19:48:11,240 adding 'jcvi/variation/phase.py' 2021-07-28T19:48:11,242 adding 'jcvi/variation/snp.py' 2021-07-28T19:48:11,248 adding 'jcvi/variation/str.py' 2021-07-28T19:48:11,250 adding 'jcvi/variation/tassel.py' 2021-07-28T19:48:11,252 adding 'jcvi-1.1.4.dist-info/LICENSE' 2021-07-28T19:48:11,254 adding 'jcvi-1.1.4.dist-info/METADATA' 2021-07-28T19:48:11,255 adding 'jcvi-1.1.4.dist-info/WHEEL' 2021-07-28T19:48:11,256 adding 'jcvi-1.1.4.dist-info/top_level.txt' 2021-07-28T19:48:11,259 adding 'jcvi-1.1.4.dist-info/RECORD' 2021-07-28T19:48:11,278 removing build/bdist.linux-armv7l/wheel 2021-07-28T19:48:11,594 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T19:48:11,614 Created wheel for jcvi: filename=jcvi-1.1.4-cp39-cp39-linux_armv7l.whl size=1235605 sha256=85633d610cf49cca0def4d79279dbc20294f5a3cff5a8e7925fd4b5f80beed0e 2021-07-28T19:48:11,615 Stored in directory: /tmp/pip-ephem-wheel-cache-qfh3qzps/wheels/37/32/bb/3ac721c6eb1a888bc7e42659bc56ab7d6b6e27ebc95e4a4531 2021-07-28T19:48:11,632 Successfully built jcvi 2021-07-28T19:48:11,685 Removed build tracker: '/tmp/pip-req-tracker-nx9anlb5'