2021-07-28T19:56:34,292 Created temporary directory: /tmp/pip-ephem-wheel-cache-0ht3ez2m 2021-07-28T19:56:34,294 Created temporary directory: /tmp/pip-req-tracker-0jdv72ke 2021-07-28T19:56:34,295 Initialized build tracking at /tmp/pip-req-tracker-0jdv72ke 2021-07-28T19:56:34,295 Created build tracker: /tmp/pip-req-tracker-0jdv72ke 2021-07-28T19:56:34,295 Entered build tracker: /tmp/pip-req-tracker-0jdv72ke 2021-07-28T19:56:34,296 Created temporary directory: /tmp/pip-wheel-a0pcrpar 2021-07-28T19:56:34,325 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T19:56:34,326 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T19:56:34,326 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T19:56:34,326 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T19:56:34,327 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T19:56:34,329 WARNING: Location '/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:56:34,330 WARNING: Location 't/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:56:34,330 WARNING: Location 'm/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:56:34,330 WARNING: Location 'p/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-28T19:56:34,331 1 location(s) to search for versions of jcvi: 2021-07-28T19:56:34,331 * https://pypi.org/simple/jcvi/ 2021-07-28T19:56:34,331 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-07-28T19:56:34,332 Getting page https://pypi.org/simple/jcvi/ 2021-07-28T19:56:34,333 Found index url https://pypi.org/simple 2021-07-28T19:56:34,450 Found link 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T19:56:34,465 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T19:56:34,466 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T19:56:34,466 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T19:56:34,466 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T19:56:34,467 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T19:56:34,467 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T19:56:34,467 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T19:56:34,468 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T19:56:34,468 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T19:56:34,468 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T19:56:34,469 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T19:56:34,469 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T19:56:34,469 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T19:56:34,470 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T19:56:34,470 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T19:56:34,470 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T19:56:34,470 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T19:56:34,471 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T19:56:34,497 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T19:56:34,515 Collecting jcvi==1.1.5 2021-07-28T19:56:34,517 Created temporary directory: /tmp/pip-unpack-3s5jetqc 2021-07-28T19:56:35,158 Downloading jcvi-1.1.5.tar.gz (821 kB) 2021-07-28T19:56:35,877 Added jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b to build tracker '/tmp/pip-req-tracker-0jdv72ke' 2021-07-28T19:56:35,878 Running setup.py (path:/tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c/setup.py) egg_info for package jcvi 2021-07-28T19:56:35,879 Created temporary directory: /tmp/pip-pip-egg-info-4f1hl0yq 2021-07-28T19:56:35,879 Running command python setup.py egg_info 2021-07-28T19:56:37,341 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.5' to '1.1.5' 2021-07-28T19:56:37,342 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:56:37,397 running egg_info 2021-07-28T19:56:37,399 creating /tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info 2021-07-28T19:56:37,401 writing /tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/PKG-INFO 2021-07-28T19:56:37,404 writing dependency_links to /tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/dependency_links.txt 2021-07-28T19:56:37,407 writing requirements to /tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/requires.txt 2021-07-28T19:56:37,408 writing top-level names to /tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/top_level.txt 2021-07-28T19:56:37,410 writing manifest file '/tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:56:37,433 reading manifest file '/tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:56:37,435 reading manifest template 'MANIFEST.in' 2021-07-28T19:56:37,439 adding license file 'LICENSE' 2021-07-28T19:56:37,448 writing manifest file '/tmp/pip-pip-egg-info-4f1hl0yq/jcvi.egg-info/SOURCES.txt' 2021-07-28T19:56:37,556 Source in /tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c has version 1.1.5, which satisfies requirement jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b 2021-07-28T19:56:37,557 Removed jcvi==1.1.5 from https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b from build tracker '/tmp/pip-req-tracker-0jdv72ke' 2021-07-28T19:56:37,562 Created temporary directory: /tmp/pip-unpack-8vciy8hh 2021-07-28T19:56:37,563 Building wheels for collected packages: jcvi 2021-07-28T19:56:37,567 Created temporary directory: /tmp/pip-wheel-o63p_jgy 2021-07-28T19:56:37,568 Building wheel for jcvi (setup.py): started 2021-07-28T19:56:37,568 Destination directory: /tmp/pip-wheel-o63p_jgy 2021-07-28T19:56:37,568 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-o63p_jgy 2021-07-28T19:56:38,950 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.5' to '1.1.5' 2021-07-28T19:56:38,951 warnings.warn(tmpl.format(**locals())) 2021-07-28T19:56:39,017 running bdist_wheel 2021-07-28T19:56:39,022 running build 2021-07-28T19:56:39,022 running build_py 2021-07-28T19:56:39,027 creating build 2021-07-28T19:56:39,028 creating build/lib.linux-armv7l-3.9 2021-07-28T19:56:39,028 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:56:39,030 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:56:39,032 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T19:56:39,034 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,035 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,037 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,040 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,042 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,045 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,047 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,050 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,052 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,055 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,057 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,060 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,062 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,065 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,067 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,068 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,071 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,074 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T19:56:39,079 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,079 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,082 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,085 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,088 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,091 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,094 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,097 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,099 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,102 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,104 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,107 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,109 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,111 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,113 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,115 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,117 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,119 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,121 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,124 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,125 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,128 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,129 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,132 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T19:56:39,135 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,136 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,139 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,141 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,143 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,145 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,147 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,149 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,152 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,154 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,155 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,158 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,160 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T19:56:39,164 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,165 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,167 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,169 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,173 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,176 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,179 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,181 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,184 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,186 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,189 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,191 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,194 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,196 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,198 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,200 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,201 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,204 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,205 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,207 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,210 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,212 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,214 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,216 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,218 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,220 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,223 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,225 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T19:56:39,229 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,229 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,232 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,234 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,236 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,237 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,239 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,241 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,244 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,246 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,248 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T19:56:39,252 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,253 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,257 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,259 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,261 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,266 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,267 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,269 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,272 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,274 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,276 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,278 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,280 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,283 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,285 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,289 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,291 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,293 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,296 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,298 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,300 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,302 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,304 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,306 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,308 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,311 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,312 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,315 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,316 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,318 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,320 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,325 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,325 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,328 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,330 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,332 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,335 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,338 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,341 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,344 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,346 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,349 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,350 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,352 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,355 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,358 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,360 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,363 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,366 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,368 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,370 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,372 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,374 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,376 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,378 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,379 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,381 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,384 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,386 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,389 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,390 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,392 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,394 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,396 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,399 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,401 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,403 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,405 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,407 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,408 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,410 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,412 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T19:56:39,415 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,416 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,418 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,420 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,422 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,424 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,426 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,428 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,430 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,433 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,435 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,437 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,438 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,440 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,442 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T19:56:39,445 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,446 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,449 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,451 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,454 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,456 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,458 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,460 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,463 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,464 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,465 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,469 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T19:56:39,471 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,472 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,473 running egg_info 2021-07-28T19:56:39,481 writing jcvi.egg-info/PKG-INFO 2021-07-28T19:56:39,484 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T19:56:39,486 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T19:56:39,487 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T19:56:39,529 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:56:39,536 reading manifest template 'MANIFEST.in' 2021-07-28T19:56:39,539 adding license file 'LICENSE' 2021-07-28T19:56:39,551 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T19:56:39,557 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:39,560 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:39,563 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,566 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,571 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,574 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,577 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,580 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,582 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,584 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,587 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,589 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,592 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,595 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T19:56:39,611 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T19:56:39,612 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.5' 2021-07-28T19:56:39,613 running build_ext 2021-07-28T19:56:39,672 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T19:56:40,296 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c/jcvi/assembly/chic.pyx 2021-07-28T19:56:40,296 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:56:43,332 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T19:56:43,338 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-a0pcrpar/jcvi_9a28b3f86b9e45cea64e1d48e1c2a18c/jcvi/formats/cblast.pyx 2021-07-28T19:56:43,339 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T19:56:44,365 building 'jcvi.assembly.chic' extension 2021-07-28T19:56:44,366 creating build/temp.linux-armv7l-3.9 2021-07-28T19:56:44,366 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T19:56:44,367 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T19:56:44,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T19:56:44,788 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T19:56:44,788 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T19:56:44,788 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T19:56:44,789 from jcvi/assembly/chic.c:620: 2021-07-28T19:56:44,789 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T19:56:44,789 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T19:56:44,789 | ^~~~~~~ 2021-07-28T19:56:48,786 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:56:48,914 building 'jcvi.formats.cblast' extension 2021-07-28T19:56:48,915 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T19:56:48,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T19:56:59,025 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T19:56:59,179 installing to build/bdist.linux-armv7l/wheel 2021-07-28T19:56:59,179 running install 2021-07-28T19:56:59,181 running install_lib 2021-07-28T19:56:59,184 creating build/bdist.linux-armv7l 2021-07-28T19:56:59,185 creating build/bdist.linux-armv7l/wheel 2021-07-28T19:56:59,187 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:56:59,188 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,189 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,192 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,194 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,196 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,199 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,202 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,204 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,207 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,210 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,212 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,215 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,217 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,220 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,222 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,224 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,226 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,231 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T19:56:59,234 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,235 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,238 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,241 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,244 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,247 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,250 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,253 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,255 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,257 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,260 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,262 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,264 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,267 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,268 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,270 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,272 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,274 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,276 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,279 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,281 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,283 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,285 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,288 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T19:56:59,291 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,292 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,294 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,297 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,299 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,301 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,303 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,306 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,308 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,310 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,312 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,315 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,318 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T19:56:59,320 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:56:59,323 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,324 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,326 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,328 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,331 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,333 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,335 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,337 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,339 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,341 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,344 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,347 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,351 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,352 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,354 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,356 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,358 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,360 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,362 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,364 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,366 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,369 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,371 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,373 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,375 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,378 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,381 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,383 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T19:56:59,388 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,389 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,392 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,394 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,396 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,397 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,399 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,402 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,406 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,408 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,410 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T19:56:59,415 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,416 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,422 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,424 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,426 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,433 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,435 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,437 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,439 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,443 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,444 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,446 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,448 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,451 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,453 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,456 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,461 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,463 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,465 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,469 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,471 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,473 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,475 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,478 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,479 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,482 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,484 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,486 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,489 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,511 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,513 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,515 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,517 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T19:56:59,522 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T19:56:59,525 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,525 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,528 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,531 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,534 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,537 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,540 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,544 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,548 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,550 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,558 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,561 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,563 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,565 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,567 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,571 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,573 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,576 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,580 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,583 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,585 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,587 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,591 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,592 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,594 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,596 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,598 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,600 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,603 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,605 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T19:56:59,608 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,609 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,611 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,614 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,617 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,619 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,621 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,623 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,625 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,628 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,630 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,631 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,634 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T19:56:59,637 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,638 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,640 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,643 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,646 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,648 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,649 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,651 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,654 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,657 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,661 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,663 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,666 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,668 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,671 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,674 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,675 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,677 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,679 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T19:56:59,684 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,686 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,688 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,691 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,693 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,695 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,698 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,700 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,703 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,705 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T19:56:59,708 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,709 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,712 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,715 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,718 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,721 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,724 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,726 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,730 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,732 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,733 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,738 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T19:56:59,739 running install_egg_info 2021-07-28T19:56:59,748 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.5-py3.9.egg-info 2021-07-28T19:56:59,763 running install_scripts 2021-07-28T19:56:59,832 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T19:56:59,837 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.5.dist-info/WHEEL 2021-07-28T19:56:59,840 creating '/tmp/pip-wheel-o63p_jgy/jcvi-1.1.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T19:56:59,842 adding 'jcvi/__init__.py' 2021-07-28T19:56:59,844 adding 'jcvi/_version.py' 2021-07-28T19:56:59,845 adding 'jcvi/algorithms/__init__.py' 2021-07-28T19:56:59,847 adding 'jcvi/algorithms/__main__.py' 2021-07-28T19:56:59,848 adding 'jcvi/algorithms/ec.py' 2021-07-28T19:56:59,850 adding 'jcvi/algorithms/formula.py' 2021-07-28T19:56:59,852 adding 'jcvi/algorithms/graph.py' 2021-07-28T19:56:59,854 adding 'jcvi/algorithms/lis.py' 2021-07-28T19:56:59,857 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T19:56:59,859 adding 'jcvi/algorithms/matrix.py' 2021-07-28T19:56:59,861 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T19:56:59,862 adding 'jcvi/algorithms/ml.py' 2021-07-28T19:56:59,863 adding 'jcvi/algorithms/supermap.py' 2021-07-28T19:56:59,865 adding 'jcvi/algorithms/tsp.py' 2021-07-28T19:56:59,867 adding 'jcvi/annotation/__init__.py' 2021-07-28T19:56:59,868 adding 'jcvi/annotation/__main__.py' 2021-07-28T19:56:59,871 adding 'jcvi/annotation/ahrd.py' 2021-07-28T19:56:59,873 adding 'jcvi/annotation/automaton.py' 2021-07-28T19:56:59,874 adding 'jcvi/annotation/depth.py' 2021-07-28T19:56:59,876 adding 'jcvi/annotation/evm.py' 2021-07-28T19:56:59,879 adding 'jcvi/annotation/maker.py' 2021-07-28T19:56:59,881 adding 'jcvi/annotation/pasa.py' 2021-07-28T19:56:59,883 adding 'jcvi/annotation/qc.py' 2021-07-28T19:56:59,889 adding 'jcvi/annotation/reformat.py' 2021-07-28T19:56:59,892 adding 'jcvi/annotation/stats.py' 2021-07-28T19:56:59,893 adding 'jcvi/annotation/train.py' 2021-07-28T19:56:59,896 adding 'jcvi/apps/__init__.py' 2021-07-28T19:56:59,897 adding 'jcvi/apps/__main__.py' 2021-07-28T19:56:59,899 adding 'jcvi/apps/align.py' 2021-07-28T19:56:59,908 adding 'jcvi/apps/base.py' 2021-07-28T19:56:59,911 adding 'jcvi/apps/biomart.py' 2021-07-28T19:56:59,912 adding 'jcvi/apps/blastplus.py' 2021-07-28T19:56:59,914 adding 'jcvi/apps/bowtie.py' 2021-07-28T19:56:59,916 adding 'jcvi/apps/bwa.py' 2021-07-28T19:56:59,917 adding 'jcvi/apps/cap3.py' 2021-07-28T19:56:59,919 adding 'jcvi/apps/cdhit.py' 2021-07-28T19:56:59,920 adding 'jcvi/apps/emboss.py' 2021-07-28T19:56:59,923 adding 'jcvi/apps/fetch.py' 2021-07-28T19:56:59,926 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T19:56:59,928 adding 'jcvi/apps/gmap.py' 2021-07-28T19:56:59,931 adding 'jcvi/apps/grid.py' 2021-07-28T19:56:59,935 adding 'jcvi/apps/ks.py' 2021-07-28T19:56:59,937 adding 'jcvi/apps/lastz.py' 2021-07-28T19:56:59,939 adding 'jcvi/apps/mask.py' 2021-07-28T19:56:59,943 adding 'jcvi/apps/phylo.py' 2021-07-28T19:56:59,945 adding 'jcvi/apps/r.py' 2021-07-28T19:56:59,946 adding 'jcvi/apps/restriction.py' 2021-07-28T19:56:59,948 adding 'jcvi/apps/script.py' 2021-07-28T19:56:59,949 adding 'jcvi/apps/softlink.py' 2021-07-28T19:56:59,951 adding 'jcvi/apps/tesseract.py' 2021-07-28T19:56:59,955 adding 'jcvi/apps/uclust.py' 2021-07-28T19:56:59,957 adding 'jcvi/apps/uniprot.py' 2021-07-28T19:56:59,958 adding 'jcvi/apps/vecscreen.py' 2021-07-28T19:56:59,961 adding 'jcvi/assembly/__init__.py' 2021-07-28T19:56:59,962 adding 'jcvi/assembly/__main__.py' 2021-07-28T19:56:59,971 adding 'jcvi/assembly/allmaps.py' 2021-07-28T19:56:59,974 adding 'jcvi/assembly/allpaths.py' 2021-07-28T19:56:59,976 adding 'jcvi/assembly/amos.py' 2021-07-28T19:56:59,978 adding 'jcvi/assembly/automaton.py' 2021-07-28T19:56:59,980 adding 'jcvi/assembly/bambus.py' 2021-07-28T19:56:59,981 adding 'jcvi/assembly/base.py' 2021-07-28T19:56:59,986 adding 'jcvi/assembly/ca.py' 2021-07-28T19:57:00,034 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:57:00,037 adding 'jcvi/assembly/chic.pyx' 2021-07-28T19:57:00,039 adding 'jcvi/assembly/coverage.py' 2021-07-28T19:57:00,041 adding 'jcvi/assembly/gaps.py' 2021-07-28T19:57:00,044 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T19:57:00,049 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T19:57:00,057 adding 'jcvi/assembly/hic.py' 2021-07-28T19:57:00,062 adding 'jcvi/assembly/kmer.py' 2021-07-28T19:57:00,064 adding 'jcvi/assembly/meraculous.py' 2021-07-28T19:57:00,066 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T19:57:00,071 adding 'jcvi/assembly/patch.py' 2021-07-28T19:57:00,073 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T19:57:00,075 adding 'jcvi/assembly/postprocess.py' 2021-07-28T19:57:00,078 adding 'jcvi/assembly/preprocess.py' 2021-07-28T19:57:00,080 adding 'jcvi/assembly/sim.py' 2021-07-28T19:57:00,082 adding 'jcvi/assembly/soap.py' 2021-07-28T19:57:00,084 adding 'jcvi/assembly/sspace.py' 2021-07-28T19:57:00,087 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T19:57:00,088 adding 'jcvi/assembly/trinity.py' 2021-07-28T19:57:00,091 adding 'jcvi/assembly/unitig.py' 2021-07-28T19:57:00,092 adding 'jcvi/compara/__init__.py' 2021-07-28T19:57:00,094 adding 'jcvi/compara/__main__.py' 2021-07-28T19:57:00,095 adding 'jcvi/compara/blastfilter.py' 2021-07-28T19:57:00,099 adding 'jcvi/compara/catalog.py' 2021-07-28T19:57:00,103 adding 'jcvi/compara/fractionation.py' 2021-07-28T19:57:00,105 adding 'jcvi/compara/pad.py' 2021-07-28T19:57:00,106 adding 'jcvi/compara/phylogeny.py' 2021-07-28T19:57:00,108 adding 'jcvi/compara/quota.py' 2021-07-28T19:57:00,110 adding 'jcvi/compara/reconstruct.py' 2021-07-28T19:57:00,112 adding 'jcvi/compara/synfind.py' 2021-07-28T19:57:00,121 adding 'jcvi/compara/synteny.py' 2021-07-28T19:57:00,124 adding 'jcvi/formats/__init__.py' 2021-07-28T19:57:00,125 adding 'jcvi/formats/__main__.py' 2021-07-28T19:57:00,126 adding 'jcvi/formats/ace.py' 2021-07-28T19:57:00,134 adding 'jcvi/formats/agp.py' 2021-07-28T19:57:00,139 adding 'jcvi/formats/base.py' 2021-07-28T19:57:00,149 adding 'jcvi/formats/bed.py' 2021-07-28T19:57:00,155 adding 'jcvi/formats/blast.py' 2021-07-28T19:57:00,157 adding 'jcvi/formats/btab.py' 2021-07-28T19:57:00,304 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T19:57:00,311 adding 'jcvi/formats/cblast.pyx' 2021-07-28T19:57:00,313 adding 'jcvi/formats/cdt.py' 2021-07-28T19:57:00,315 adding 'jcvi/formats/chain.py' 2021-07-28T19:57:00,316 adding 'jcvi/formats/contig.py' 2021-07-28T19:57:00,319 adding 'jcvi/formats/coords.py' 2021-07-28T19:57:00,320 adding 'jcvi/formats/excel.py' 2021-07-28T19:57:00,331 adding 'jcvi/formats/fasta.py' 2021-07-28T19:57:00,335 adding 'jcvi/formats/fastq.py' 2021-07-28T19:57:00,337 adding 'jcvi/formats/fpc.py' 2021-07-28T19:57:00,339 adding 'jcvi/formats/genbank.py' 2021-07-28T19:57:00,354 adding 'jcvi/formats/gff.py' 2021-07-28T19:57:00,357 adding 'jcvi/formats/html.py' 2021-07-28T19:57:00,358 adding 'jcvi/formats/maf.py' 2021-07-28T19:57:00,360 adding 'jcvi/formats/obo.py' 2021-07-28T19:57:00,361 adding 'jcvi/formats/paf.py' 2021-07-28T19:57:00,362 adding 'jcvi/formats/pdf.py' 2021-07-28T19:57:00,364 adding 'jcvi/formats/posmap.py' 2021-07-28T19:57:00,366 adding 'jcvi/formats/psl.py' 2021-07-28T19:57:00,367 adding 'jcvi/formats/pyblast.py' 2021-07-28T19:57:00,371 adding 'jcvi/formats/sam.py' 2021-07-28T19:57:00,373 adding 'jcvi/formats/sbt.py' 2021-07-28T19:57:00,375 adding 'jcvi/formats/sizes.py' 2021-07-28T19:57:00,379 adding 'jcvi/formats/vcf.py' 2021-07-28T19:57:00,381 adding 'jcvi/graphics/__init__.py' 2021-07-28T19:57:00,382 adding 'jcvi/graphics/__main__.py' 2021-07-28T19:57:00,385 adding 'jcvi/graphics/align.py' 2021-07-28T19:57:00,388 adding 'jcvi/graphics/assembly.py' 2021-07-28T19:57:00,391 adding 'jcvi/graphics/base.py' 2021-07-28T19:57:00,393 adding 'jcvi/graphics/blastplot.py' 2021-07-28T19:57:00,396 adding 'jcvi/graphics/chromosome.py' 2021-07-28T19:57:00,398 adding 'jcvi/graphics/coverage.py' 2021-07-28T19:57:00,400 adding 'jcvi/graphics/dotplot.py' 2021-07-28T19:57:00,403 adding 'jcvi/graphics/glyph.py' 2021-07-28T19:57:00,407 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T19:57:00,408 adding 'jcvi/graphics/graph.py' 2021-07-28T19:57:00,410 adding 'jcvi/graphics/heatmap.py' 2021-07-28T19:57:00,412 adding 'jcvi/graphics/histogram.py' 2021-07-28T19:57:00,414 adding 'jcvi/graphics/karyotype.py' 2021-07-28T19:57:00,418 adding 'jcvi/graphics/landscape.py' 2021-07-28T19:57:00,420 adding 'jcvi/graphics/logo.py' 2021-07-28T19:57:00,421 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T19:57:00,424 adding 'jcvi/graphics/synteny.py' 2021-07-28T19:57:00,425 adding 'jcvi/graphics/table.py' 2021-07-28T19:57:00,428 adding 'jcvi/graphics/tree.py' 2021-07-28T19:57:00,430 adding 'jcvi/graphics/wheel.py' 2021-07-28T19:57:00,432 adding 'jcvi/graphics/whisker.py' 2021-07-28T19:57:00,434 adding 'jcvi/projects/__init__.py' 2021-07-28T19:57:00,435 adding 'jcvi/projects/__main__.py' 2021-07-28T19:57:00,437 adding 'jcvi/projects/age.py' 2021-07-28T19:57:00,439 adding 'jcvi/projects/alfalfa.py' 2021-07-28T19:57:00,441 adding 'jcvi/projects/allmaps.py' 2021-07-28T19:57:00,443 adding 'jcvi/projects/bites.py' 2021-07-28T19:57:00,445 adding 'jcvi/projects/heterosis.py' 2021-07-28T19:57:00,447 adding 'jcvi/projects/ies.py' 2021-07-28T19:57:00,450 adding 'jcvi/projects/misc.py' 2021-07-28T19:57:00,453 adding 'jcvi/projects/napus.py' 2021-07-28T19:57:00,456 adding 'jcvi/projects/pineapple.py' 2021-07-28T19:57:00,457 adding 'jcvi/projects/pistachio.py' 2021-07-28T19:57:00,466 adding 'jcvi/projects/str.py' 2021-07-28T19:57:00,468 adding 'jcvi/projects/sugarcane.py' 2021-07-28T19:57:00,472 adding 'jcvi/projects/synfind.py' 2021-07-28T19:57:00,475 adding 'jcvi/projects/tgbs.py' 2021-07-28T19:57:00,477 adding 'jcvi/projects/vanilla.py' 2021-07-28T19:57:00,479 adding 'jcvi/utils/__init__.py' 2021-07-28T19:57:00,480 adding 'jcvi/utils/__main__.py' 2021-07-28T19:57:00,483 adding 'jcvi/utils/aws.py' 2021-07-28T19:57:00,486 adding 'jcvi/utils/cbook.py' 2021-07-28T19:57:00,487 adding 'jcvi/utils/console.py' 2021-07-28T19:57:00,489 adding 'jcvi/utils/db.py' 2021-07-28T19:57:00,491 adding 'jcvi/utils/ez_setup.py' 2021-07-28T19:57:00,492 adding 'jcvi/utils/grouper.py' 2021-07-28T19:57:00,494 adding 'jcvi/utils/iter.py' 2021-07-28T19:57:00,496 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T19:57:00,498 adding 'jcvi/utils/range.py' 2021-07-28T19:57:00,500 adding 'jcvi/utils/table.py' 2021-07-28T19:57:00,501 adding 'jcvi/utils/taxonomy.py' 2021-07-28T19:57:00,503 adding 'jcvi/utils/webcolors.py' 2021-07-28T19:57:00,506 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T19:57:00,523 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T19:57:00,527 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T19:57:00,533 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T19:57:00,537 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T19:57:00,538 adding 'jcvi/utils/data/__init__.py' 2021-07-28T19:57:00,539 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T19:57:00,541 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T19:57:00,542 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T19:57:00,544 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T19:57:00,550 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T19:57:00,552 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T19:57:00,554 adding 'jcvi/utils/data/instance.json' 2021-07-28T19:57:00,556 adding 'jcvi/variation/__init__.py' 2021-07-28T19:57:00,557 adding 'jcvi/variation/__main__.py' 2021-07-28T19:57:00,562 adding 'jcvi/variation/cnv.py' 2021-07-28T19:57:00,564 adding 'jcvi/variation/deconvolute.py' 2021-07-28T19:57:00,566 adding 'jcvi/variation/delly.py' 2021-07-28T19:57:00,568 adding 'jcvi/variation/impute.py' 2021-07-28T19:57:00,569 adding 'jcvi/variation/phase.py' 2021-07-28T19:57:00,571 adding 'jcvi/variation/snp.py' 2021-07-28T19:57:00,578 adding 'jcvi/variation/str.py' 2021-07-28T19:57:00,580 adding 'jcvi/variation/tassel.py' 2021-07-28T19:57:00,582 adding 'jcvi-1.1.5.dist-info/LICENSE' 2021-07-28T19:57:00,584 adding 'jcvi-1.1.5.dist-info/METADATA' 2021-07-28T19:57:00,585 adding 'jcvi-1.1.5.dist-info/WHEEL' 2021-07-28T19:57:00,586 adding 'jcvi-1.1.5.dist-info/top_level.txt' 2021-07-28T19:57:00,589 adding 'jcvi-1.1.5.dist-info/RECORD' 2021-07-28T19:57:00,628 removing build/bdist.linux-armv7l/wheel 2021-07-28T19:57:00,936 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T19:57:00,953 Created wheel for jcvi: filename=jcvi-1.1.5-cp39-cp39-linux_armv7l.whl size=1236300 sha256=eca264f056a05e3d8d88d927f33b981a92cc556107ac5dcb637950d7dd16d860 2021-07-28T19:57:00,954 Stored in directory: /tmp/pip-ephem-wheel-cache-0ht3ez2m/wheels/2a/5b/5c/aa0554b1888201954d2ae069afcb61d6021a4f52abd37e966e 2021-07-28T19:57:00,971 Successfully built jcvi 2021-07-28T19:57:01,017 Removed build tracker: '/tmp/pip-req-tracker-0jdv72ke'