2021-07-28T20:37:07,366 Created temporary directory: /tmp/pip-ephem-wheel-cache-b4t6e73h
2021-07-28T20:37:07,369 Created temporary directory: /tmp/pip-req-tracker-vizw7ff6
2021-07-28T20:37:07,369 Initialized build tracking at /tmp/pip-req-tracker-vizw7ff6
2021-07-28T20:37:07,369 Created build tracker: /tmp/pip-req-tracker-vizw7ff6
2021-07-28T20:37:07,369 Entered build tracker: /tmp/pip-req-tracker-vizw7ff6
2021-07-28T20:37:07,370 Created temporary directory: /tmp/pip-wheel-larjdatp
2021-07-28T20:37:07,402 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-28T20:37:07,402 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-28T20:37:07,402 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-28T20:37:07,403 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-28T20:37:07,403 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-28T20:37:07,406 WARNING: Location '/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T20:37:07,406 WARNING: Location 't/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T20:37:07,406 WARNING: Location 'm/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T20:37:07,406 WARNING: Location 'p/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-28T20:37:07,407 1 location(s) to search for versions of gemmi:
2021-07-28T20:37:07,407 * https://pypi.org/simple/gemmi/
2021-07-28T20:37:07,407 Fetching project page and analyzing links: https://pypi.org/simple/gemmi/
2021-07-28T20:37:07,408 Getting page https://pypi.org/simple/gemmi/
2021-07-28T20:37:07,409 Found index url https://pypi.org/simple
2021-07-28T20:37:07,679   Found link https://files.pythonhosted.org/packages/3d/74/21e7705118e1f4ac86f03f99a71dc2ba33b8a73fef727be638ee054886e6/gemmi-0.1.2.tar.gz#sha256=2cf46e879e036f7d3bd656c59d04ffe7f3beee8ba41f2cb4475cc5b2c97154f3 (from https://pypi.org/simple/gemmi/), version: 0.1.2
2021-07-28T20:37:07,679   Found link https://files.pythonhosted.org/packages/13/89/4369460dd34f3e7f46c4ec44765cf9f79e392cf3faa8b3792285db77c61f/gemmi-0.1.3.tar.gz#sha256=238243f3814b9e2ef6aab1448a1080da90190e60e32b1d22a145f5d59b17369f (from https://pypi.org/simple/gemmi/), version: 0.1.3
2021-07-28T20:37:07,680   Found link https://files.pythonhosted.org/packages/fb/18/819ab7731075516bb422586a97a4e59313259fa60e49642e26859fe0ef76/gemmi-0.1.4.tar.gz#sha256=e1fcbb530fc2d17cea010410452db8dfa35d7971e58a5c993e3d3650fd49b2fb (from https://pypi.org/simple/gemmi/), version: 0.1.4
2021-07-28T20:37:07,680   Found link https://files.pythonhosted.org/packages/d4/d5/85a0fecb747b415fcc6e3fee9f48edab936e6339ec50736abe1dcfc0d460/gemmi-0.1.5.tar.gz#sha256=f13e5f7405269b24a790faa9620474b9f2a4ad6b31c012b85cfab559a2995d64 (from https://pypi.org/simple/gemmi/), version: 0.1.5
2021-07-28T20:37:07,680   Found link https://files.pythonhosted.org/packages/e5/96/664c971ddae50eb00ff9ee39ce8db4e3f481a1ca740583081a1a84146d39/gemmi-0.1.6.tar.gz#sha256=4b79dd9820663b9aaba54015feba8b7608508ead32d3110fc9d2739400c242fd (from https://pypi.org/simple/gemmi/), version: 0.1.6
2021-07-28T20:37:07,680   Found link https://files.pythonhosted.org/packages/e5/41/e51478a35846a23ef2764d9a36ced90e63eafd49c7a4c85559b0566c3884/gemmi-0.1.7.tar.gz#sha256=75da3d78d9f72d3d111b2a8175408b2320b9a00b97649fa3ccdc659a31c02458 (from https://pypi.org/simple/gemmi/), version: 0.1.7
2021-07-28T20:37:07,681   Found link https://files.pythonhosted.org/packages/20/bd/36cb4b950bbe78d5a4e3fd1c127100894fc97d059db57771fa1fd1ce9f2b/gemmi-0.2.0.tar.gz#sha256=c5de4d3f56fb36d5d61f8be110dc14af630ece92755f2913fa4f76fc8340f84a (from https://pypi.org/simple/gemmi/), version: 0.2.0
2021-07-28T20:37:07,681   Found link https://files.pythonhosted.org/packages/d1/2a/7cb4d0fbc88af06fe42971bfebbbefa670a156b396a9d59fb428809977c4/gemmi-0.2.1.tar.gz#sha256=8c5248edf619f86d7e64c6bf9ef931ac189c8928ae136efa28c4fb5365ffd7fa (from https://pypi.org/simple/gemmi/), version: 0.2.1
2021-07-28T20:37:07,681   Found link https://files.pythonhosted.org/packages/09/bd/2d15c8e32c28b11d3f781293a3c828834874bf0c17d193a65a0ab4e781df/gemmi-0.2.2.tar.gz#sha256=b520334b83c42384f26b0d72c0684c0964fdd913d71cffc39b7af71792fc82fc (from https://pypi.org/simple/gemmi/), version: 0.2.2
2021-07-28T20:37:07,682   Found link https://files.pythonhosted.org/packages/2b/d5/15ac654339e17b64f6c4c3d07cea51f6f329eeee1ba01ad58536279fd400/gemmi-0.2.3.tar.gz#sha256=f86691a7786eca8737bebad8401ccff021ae5b629fde9ec0729d3e22ee43e674 (from https://pypi.org/simple/gemmi/), version: 0.2.3
2021-07-28T20:37:07,682   Found link https://files.pythonhosted.org/packages/32/fa/781063687c6e47133a8c39b142a10573546153dde6f5558e9802690bb184/gemmi-0.2.4.tar.gz#sha256=38822f8d43891c8511fc480428511a3c5345751fcd660076cb547fd1fb5ffbc6 (from https://pypi.org/simple/gemmi/), version: 0.2.4
2021-07-28T20:37:07,682   Found link https://files.pythonhosted.org/packages/8b/d5/92f78ebb4734212283301730b193bd44f3ea74161bfd413939a88e976f67/gemmi-0.2.7.tar.gz#sha256=249751bec0559c678ec258926e1748baaad11cfd3b3e2fae569352f5516c44ba (from https://pypi.org/simple/gemmi/), version: 0.2.7
2021-07-28T20:37:07,683   Found link https://files.pythonhosted.org/packages/4b/4b/51d357ef35fcf27a5325426b9326498ab1482be37efbc06a92202f921407/gemmi-0.2.8.tar.gz#sha256=78279babad10cdd4491fde300892aa82711c6c587bbc85824df831082ae8bd3c (from https://pypi.org/simple/gemmi/), version: 0.2.8
2021-07-28T20:37:07,683   Found link https://files.pythonhosted.org/packages/e0/9c/6ea8ea2bbda7ab9eb8b548d899cc328aabd9cf04c720e1cd3287fcd00544/gemmi-0.3.0.tar.gz#sha256=da4f693270b50a5e1d1c7b76184bf00836ec9366ec6081d413460d2bd73a9e14 (from https://pypi.org/simple/gemmi/), version: 0.3.0
2021-07-28T20:37:07,683   Found link https://files.pythonhosted.org/packages/e5/ed/6a91e0fe126a30842c93bfa3865dab81d8383a12026c034edfdf5bf60f85/gemmi-0.3.1.tar.gz#sha256=2b9777962d56b3e0d32122757830e63a03eb281cb18abe822cd3429ddfcc56a9 (from https://pypi.org/simple/gemmi/), version: 0.3.1
2021-07-28T20:37:07,683   Found link https://files.pythonhosted.org/packages/5d/86/6cef13dcfd9b5f3101e826f35fd54088942496489b9307480185fe63d2ed/gemmi-0.3.2.tar.gz#sha256=b626f55807abf58f2510c90bcf383af50f132bb2a9ff1d6a8a53ac50a591a217 (from https://pypi.org/simple/gemmi/), version: 0.3.2
2021-07-28T20:37:07,684   Found link https://files.pythonhosted.org/packages/af/9d/ce0bdf384249da75e4584b624f5a144366a3c8eceff2dff19236aff08dd1/gemmi-0.3.3.tar.gz#sha256=c8de0da30464e49532af856e47b3815df9c042690169a85dfc3fac7c83066251 (from https://pypi.org/simple/gemmi/), version: 0.3.3
2021-07-28T20:37:07,684   Found link https://files.pythonhosted.org/packages/b3/b8/1f41f9a0849c5011cb890f89b6548c8dec1b52ee4bf28cb0ebe3728016e9/gemmi-0.3.4.tar.gz#sha256=94184ef130c341b67eddf0fbab41b57d47c36ab3a53088af315065b50e7c117c (from https://pypi.org/simple/gemmi/), version: 0.3.4
2021-07-28T20:37:07,684   Found link https://files.pythonhosted.org/packages/f4/f0/f4cd4d29e53707efccb2e6d4b2c185851dc1ef02f7aa041b9803fb1a8590/gemmi-0.3.5.tar.gz#sha256=f78b590b4594ec016dcf8b3be10b5eb23e54e2b19dbc73647da9bbf15ac4f824 (from https://pypi.org/simple/gemmi/), version: 0.3.5
2021-07-28T20:37:07,684   Found link https://files.pythonhosted.org/packages/39/b1/9ca0ad395150af606cf85a2e45c2dfaab02492d36ff264efdcf25f7479c1/gemmi-0.3.6.tar.gz#sha256=b290c9ebf03555ba308f9e65e9eaf31ae40acf89e7d9a4b5536e0096dea7d3e2 (from https://pypi.org/simple/gemmi/), version: 0.3.6
2021-07-28T20:37:07,685   Found link https://files.pythonhosted.org/packages/99/ff/0da30f43421b952256ba77edf0eee9bc0711715a4687489ee33037a1f132/gemmi-0.3.7.tar.gz#sha256=8461d66b7bf033cb20d9b62a5fe65474de09e59b90702651f2317ca1e578f451 (from https://pypi.org/simple/gemmi/), version: 0.3.7
2021-07-28T20:37:07,685   Found link https://files.pythonhosted.org/packages/06/4f/5e2e02aa93bcdf27b54f810ecda6e3d08b962d8ef27c9fa731f04523dc80/gemmi-0.3.8.tar.gz#sha256=95a3baada9756ab68f1061161fdddbe3532ffd7c70c2271256f51781e11d7dc2 (from https://pypi.org/simple/gemmi/), version: 0.3.8
2021-07-28T20:37:07,685   Found link https://files.pythonhosted.org/packages/c0/4d/7567aed9911e6f62021508d72deae27d7f1e5dcb41032c4d642c01158408/gemmi-0.4.0.post1.tar.gz#sha256=fe4aab685772be9002ae047c86282061a54a8472c41e71dc7f4e2426a26a7626 (from https://pypi.org/simple/gemmi/), version: 0.4.0.post1
2021-07-28T20:37:07,686   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f5/da/3fb440c7b946febcc4fdb3f4928b1e93b2627ccdf26d69962f3c05b8f077/gemmi-0.4.1-cp36-cp36m-win32.whl#sha256=7fd237c9df1a14c4fdb3ac71999e492d2c704924d99cbc3c56e2b3068e6732cf (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,686   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/88/8c/72cd48a1e89ad92f24e67d15545b9e3f478f256fb4729dbbb4985a0efe2f/gemmi-0.4.1-cp36-cp36m-win_amd64.whl#sha256=0e787ecd22313c52bfeae3408a3de06ec676e793822a245886bccfe5bd8cd79a (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,686   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cb/84/0162cc2197241200740655ebe6cfd33342ddb152feca089f98aab91f56b0/gemmi-0.4.1-cp37-cp37m-win32.whl#sha256=f818934948b41087b9e2d1fb4a14db70c822f6cf153658a649d607d098d9bfd1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,686   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/3a/c69ec458774b60d61a929ac2357d0b9c0a0b5187e55cdb75e138cefee2d3/gemmi-0.4.1-cp37-cp37m-win_amd64.whl#sha256=81d236d7ffe05be29cd3480c2821276337f661e6fcb0881c5e32c360b7be7378 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,686   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c2/a2/55410bfd6be3391475c2a005fcde251f843e0d117707dacb07bb880d2b21/gemmi-0.4.1-cp38-cp38-win32.whl#sha256=980c890ffc5034940e756a887670406939f3a95ce60493ab98cd8f2e4f2d7830 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,687   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/a4/361f66459b444340a29c1dbeb81918dccfab580f92752571a361b53c80fe/gemmi-0.4.1-cp38-cp38-win_amd64.whl#sha256=28de811e9a1c142a311cb4ed52f367788d9911de9cd17ad84566afae1ce97b15 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,687   Found link https://files.pythonhosted.org/packages/2f/d5/4ca93e1691bd8cb2d1e06ce4ff816eca300aa4e09416caf45bbb6451f013/gemmi-0.4.1.tar.gz#sha256=65f36f61e1b88913ab697bfb846553e15398ca27fac952a1d386a5d15779951b (from https://pypi.org/simple/gemmi/), version: 0.4.1
2021-07-28T20:37:07,687   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/22/03/599bf3752327fdbc408133daf5d6a7b950d72c4d81f20d8d3b2d8e95be85/gemmi-0.4.2-cp27-cp27m-manylinux2010_x86_64.whl#sha256=2c3fe451e560f0cb316f425afa8f95ad0138c5e14baf15bad8add3b16a002820 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,687   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/aa/f03b573d7333211fda34ad2c7dddbb4b7310fcf9caf7e938318208819049/gemmi-0.4.2-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=f7faad54418319bc8ff1b7e5b1cb4f4cbac4653f4edf528e911f040f5c9ce012 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,688   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/34/eb/d55b627cd8cb0f9bd3fc076afdd8b3b999316d6c4c24b6b703b97730ffab/gemmi-0.4.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=65d303507bbedb01265a59e33f9c087957fbcffe240366a802e240fa032eca1c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,688   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/6a/fe1a65806633ea2129507b0f8b4034afdbf383e474a12152839ee50a52eb/gemmi-0.4.2-cp36-cp36m-manylinux2010_x86_64.whl#sha256=09fd610301a230cb7890f2d7f6dd7ae98ead9bc59f3fc37790f8a95dd4017eac (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,688   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/59/a4976acb0891bc600c161f08c341666daf419885f07a105e335e1aeeecb7/gemmi-0.4.2-cp36-cp36m-win32.whl#sha256=7143c3b674f428a420ac13d72fb0d327e3c842f014e2dac1fcf18453d3671d6f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,688   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/f9/0e3c3e3cbb2116fa23a1fe815542a971a5775cd7ada9d02ffd5d58fcde85/gemmi-0.4.2-cp36-cp36m-win_amd64.whl#sha256=326b19d2fb0b8714f6a4631b3e0e2283b11424936cb994d0a330d6a70cc56986 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,688   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/95/85635908935957b4ccc1700dafdcd0c309e00a4a3291aa7a8d6c65a5f089/gemmi-0.4.2-cp37-cp37m-manylinux2010_x86_64.whl#sha256=d61e759f705dc2fd16c94947550a258668ec6e2d4085addac6dc5d746f308149 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bf/5e/2dcb2454003be5505eb7a75b5eecde74486d2a1bea2f189fc30c749076e6/gemmi-0.4.2-cp37-cp37m-win32.whl#sha256=e9eecdc0afdf6d05b0b668462fc45f48c32dcb22a153e6138ffd590dc220b957 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3c/8d/055161b661f3dcebbd1cfa3c55ba02ab7f434d87147481b3566080a4ccac/gemmi-0.4.2-cp37-cp37m-win_amd64.whl#sha256=18a9f24cca2ad93f5feec70abe64eb75c1547509e4530898e4b5566696ad26a1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ce/82/a45cb30c350b56f4dc628986b84b91310b88e1b2ac73ae3b37c3a1ac8585/gemmi-0.4.2-cp38-cp38-manylinux2010_x86_64.whl#sha256=c922d52b726ee554dfcbe8e01af11bb32b2ddbd9d6377ceb7db836b5bf2b15b5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9a/39/784a739b8d83175667ef1cc85a53acbe79b9437292031225b3ed552bc035/gemmi-0.4.2-cp38-cp38-win32.whl#sha256=5b586c704add91aa59ca14cf7f03142512e9785329b42a8cb9007453548511e9 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/62/8911a99982bc95e629f41a7096f0f907cf4b001ed6c0087e0a2763c943e1/gemmi-0.4.2-cp38-cp38-win_amd64.whl#sha256=06c0efb154804fab1c74c816bde974089e0653fb58c8f3c0ad9795e7c5678217 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,689   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/95/9b/d75a5882a9bb13d47e99e0552b516e330004b411e4547b37a3743c74976b/gemmi-0.4.2-cp39-cp39-manylinux2010_x86_64.whl#sha256=ffca3e4973bfb1034044815b087370de5af12143a18f1b37393a5d2f0d4e03df (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,690   Found link https://files.pythonhosted.org/packages/a4/ac/b850ac03ad0f899c0c8f699af60b5c515291c74470601e3b12803d6fca2e/gemmi-0.4.2.tar.gz#sha256=26e1402e48a54132c1a85c7ae1f6d939b3fae4b1fb8d5fa33751cbebebac52ee (from https://pypi.org/simple/gemmi/), version: 0.4.2
2021-07-28T20:37:07,690   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/23/72/c5e726b2722bdfbbb82847582ff64caaf60f70ca38adf11946561fbc75ce/gemmi-0.4.3-cp27-cp27m-manylinux2010_x86_64.whl#sha256=8a2e3b4520e40b32fc5202ae916c8e654b382ece6e6bcb2c5938d5915556c792 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,690   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b7/cf/5a9f3534db7e32658104b69e8a631c4fcf9a4bff7b8d38dca572bb6ed5d7/gemmi-0.4.3-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=27b97d8d1e5d1490d51a39c07ebc7640dd29b35b058bacb06db9b4ab21b0c118 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,690   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d4/8b/c55499a4d0d2a155c4c4ce220a2a942f0026909f4ec849609fc6688eb5a4/gemmi-0.4.3-cp35-cp35m-manylinux2010_x86_64.whl#sha256=182acd66e655a5cd5efd233e4baa0e1c153e8e15053767d2b3e6b5776f57176b (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,691   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c3/c4/d3239cd44ce93e14454e2f6596a723f5245776fe822238ac0473ef6d81d4/gemmi-0.4.3-cp36-cp36m-manylinux2010_x86_64.whl#sha256=4875dd21b03ce53882a4569978d0c7f4db1f9984605721989da6836835a24ff6 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,691   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/b9/4821a0951160692524e8394629b952337ad0fbe111b5cf26dc56a9c8e59e/gemmi-0.4.3-cp36-cp36m-win32.whl#sha256=65466099cb7f64117693b55e2b6c41d834a3c7651bfbce0890bd8c9fb7b70f05 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,691   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6a/52/e2813c31a8d080649737308823e85d17324defb683a61e853beea00ed63e/gemmi-0.4.3-cp36-cp36m-win_amd64.whl#sha256=f4ff57170a1acd028b3bfd68d7228bf930855d2d3b2631a9eea4e01602ef3fb2 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,691   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b1/91/659f69913777cc1fa590f25f5831d9803c9681923690e426af680d9380cd/gemmi-0.4.3-cp37-cp37m-manylinux2010_x86_64.whl#sha256=0e52c81f36d45b51055c0ab62317f72e136a86b9c4ca3ea8045eecaace7b09e5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,691   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5a/c9/e78fbd8a8d48f13c9da4e6afc4941bbf40142e6423d487335f8fcf46e2db/gemmi-0.4.3-cp37-cp37m-win32.whl#sha256=5940874fbbc5dbf350789d03e91ba10ed902ad9d3321030a524337e437c8409c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,692   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9e/6e/0ab2f8a07c42a54d6e6fda65549ff13a081c94601f084f795a380a8f14d2/gemmi-0.4.3-cp37-cp37m-win_amd64.whl#sha256=40b926cfc1e03963c4d19455dccce11daf9350b1ac54210608b24936e25bb833 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,692   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dd/43/aa263331953f26ee8cf573129576a87252c4667686b04280e2e2d46a1ef7/gemmi-0.4.3-cp38-cp38-manylinux2010_x86_64.whl#sha256=533c17851d4f2d9d5207cfe8b97de9e7fd42bbf95995e9ee5044c6ce59daae6d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,692   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/37/dd827724ae053469469c4dc3f050b5b16093195fa50030a202a593fb380a/gemmi-0.4.3-cp38-cp38-win32.whl#sha256=9b13da898e62666249251a358f10087ffdac2bcf8734bb1780b54fda263babc8 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,692   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cd/15/4460162edf9aea5c568b6fbdf2b55536800b32e639064db8fb112c779edf/gemmi-0.4.3-cp38-cp38-win_amd64.whl#sha256=e70501c35e56ec6dafd8a2d64d74a3e5cf32fc87c5934d5ca68ad077bb0fe042 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,692   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/35/e8b97d567e27090876330931af7a5f097aed5387067718a25a9d4225ff82/gemmi-0.4.3-cp39-cp39-manylinux2010_x86_64.whl#sha256=f2b50d47148bb02c0cade07d936c27efd56aa192b871cbd05c50e815f0f5189c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,693   Found link https://files.pythonhosted.org/packages/b7/6b/b4c5c2c12da58813f2478fdffac17d86aaf46c570b6f8b42eef9778d8180/gemmi-0.4.3.tar.gz#sha256=dd1f9d3b5ae06593f15e3093db5a41e6d4609307888ed3b25388087eae7ad9d3 (from https://pypi.org/simple/gemmi/), version: 0.4.3
2021-07-28T20:37:07,693   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/88/e074befd61f9abbc617edd24283bf642869882c023b2da5cf78bbbe8b967/gemmi-0.4.4-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=06ac6acad283b6d6181c337cc9cbd24ab4ad745b51da2e55ed1ef6973d0b5af9 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,693   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/f0/47da82d4ba10f1d15a212d74c9d712158b994bde8115f9d6d01f5c4ebe6f/gemmi-0.4.4-cp27-cp27m-manylinux2010_i686.whl#sha256=8a18033708701fa6c866fef000142a2e2ae14246a8995308d0369e3c13fe65fa (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,693   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1f/b6/28f2a87d7e189fe9604897e13fd05a881a7933d7d293fc04efdbc6ad436b/gemmi-0.4.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=c68986b7542e8bd4047437fcf378e991ad90edeb6f89079d740225c994bc51dd (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,693   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/89/06/0c6eda981f85fb5f1633d19c8ce0cbd2d8fcf5677b5d563740241737ac90/gemmi-0.4.4-cp27-cp27mu-manylinux2010_i686.whl#sha256=98dff07c2c7815462abadbfc17fbe76d772e9e245fcef055d6288d03ffdb3c9f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,694   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/66/c696b84cab12dcc9c41f4d59eb767ed681359a0eafd331d9dfe5bab42b8c/gemmi-0.4.4-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8d8c82d510af39a126b398da03fe4ca475329a253bbf03dfe09b59d78c5e34e9 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,694   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1b/ed/d6745f20401fa9383ec0f166120c8f1d569795d5dc75601386e9811e587e/gemmi-0.4.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d43f4e79bf7b9a069ac8874c243b64840c3311e19c0fa273ad24d136c84e045b (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,694   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dc/18/0b5127d8f84979f371d588a323047483a22604eadb457ce9cee709895f29/gemmi-0.4.4-cp36-cp36m-manylinux2010_i686.whl#sha256=949eaec9199f5c503c997f91bcf1dd466e2ef6f1231367bf9c2a124d994e6226 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,694   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6b/62/eea9c84d0e37df89b34c03b562522556419c080462c92eede3ccb9697625/gemmi-0.4.4-cp36-cp36m-manylinux2010_x86_64.whl#sha256=c53cba8d1391021ba4798991109659c10bedaf8ee81164fd8b13fb55a4d86a9f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,694   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/62/78cbc5c9e8f68a84547621a5d42ae22560c0215f918a6c8e007835a59e8a/gemmi-0.4.4-cp36-cp36m-win32.whl#sha256=c3deb52d2b7f72db23ae5c5cb9d01d0fde1d26b736629b68846ad5421db1a20e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,695   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a8/86/7258f7f4797308e3750c30ec16d9850dac8d0e865fc1d2fcd18e345ff82d/gemmi-0.4.4-cp36-cp36m-win_amd64.whl#sha256=c692693b0466895dc0cc172aad70e6d657435a161f9c7fc8b49dabac8a5ebb06 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,695   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/44/c8cd594bc8075226ec1d38c330eb412650e75d9899db7c160b96b788fe5f/gemmi-0.4.4-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a4dafdb7d1068d7ae205d89409e128a0778c197a23f22472440371d8290c3592 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,695   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/68/832c4428629c200710b73ab360bbf3cbbe7bdff439618e06c136efb083a4/gemmi-0.4.4-cp37-cp37m-manylinux2010_i686.whl#sha256=0e10dfcbb8f357af4865cd9a4b7f8429ac955fc1ec13ab309fddcbafcca07b5f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,695   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/02/b1edf3ca6e2bbc04d5bf9223ca53571a6dec25156b708bc4303352f4f8b1/gemmi-0.4.4-cp37-cp37m-manylinux2010_x86_64.whl#sha256=ccb6e07f90b7e7fdf60ad6785b1c1d00f40d08e8f017a892273f550498b8f4c2 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,695   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/13/2f/37bbe81cdad4ad391102f85f660dddc3b9c69a9babb79edf7a546bb00a34/gemmi-0.4.4-cp37-cp37m-win32.whl#sha256=805ceab04ae4a94fcdc6e6570eb43f62e31d8625e22178e6410ca91cd8b9154d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,696   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e0/3b/624099e50f36dccf6adf402c5c30f8aa788a29e7a7daa0814ffc2b029438/gemmi-0.4.4-cp37-cp37m-win_amd64.whl#sha256=d248cc41378cc2222823fb361c66cb1b54f8bbffc3a86ce5e25a81a6d2747388 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,696   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/e6/54a757bb93d5e818d3c2a9a2c78c4ce2d929831e82248e2bbdfc8b83a5a4/gemmi-0.4.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=db1c7347a999d654491436314f6baade4df7e19de1a4593b10b96ec9739868ee (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,696   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/61/12/f0e468abe27ca297d48739409f91ae7c8316179eb46e7d6566ef6f8531f0/gemmi-0.4.4-cp38-cp38-manylinux2010_i686.whl#sha256=b8a49aed16792fc6449076847b207af60527bd8c5ed35941f806310b41ff09c3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,696   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e3/25/f86bf28f87680c7acfc0366eaeef544af75c17480777e9572f845b73a9ae/gemmi-0.4.4-cp38-cp38-manylinux2010_x86_64.whl#sha256=9f736fead1ba7d617f1a99ed0d034c9352df8df285e67fd29e201abd9b887da3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,696   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/0b/5ed3cfbd0bc92abf4bed4dd765ed5c3aa639ff2500abe9855c6178f4a8f5/gemmi-0.4.4-cp38-cp38-win32.whl#sha256=095e7da75761fe455e338e0e483757c7d75a49f084003987a5024a829b6d0c26 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/54/78bf9f5257e928db4a5c3464ac0258b2e7c8ddfb01103dd2278bfc996a1c/gemmi-0.4.4-cp38-cp38-win_amd64.whl#sha256=c5214191d65e4fe2ebd7581aabfc431b2aca113ead63040cbd9bacc7148d10f2 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fe/73/b1274d1b4e946992e17c6260498e2538744eb33003b17d9d9a8ee0560b32/gemmi-0.4.4-cp39-cp39-macosx_10_9_x86_64.whl#sha256=e1d9dd1d87ae09a0cfd09f2e965c2422029651bf12d84994b5ae1559074888bf (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/39/44/e9f31da6e5d63564620ccdfa8fbd811a7056d0ea114874273a8357b14284/gemmi-0.4.4-cp39-cp39-manylinux2010_i686.whl#sha256=bf6b2762d330fb1cba8233279da8ec21402e87718e98f08f2ebb7a7a99afa36b (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/3e/d823ff5a6fa3dcf98a6460ee281c82f73c384f27467d869018b674aa7636/gemmi-0.4.4-cp39-cp39-manylinux2010_x86_64.whl#sha256=c0021ee001a2efddb943b3e420421204b546b18d4c2cc828b74f278b9e7860ff (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/14/73eda6090c1a6062c6428762e3b722856dada25bfff509532ccd1b039c87/gemmi-0.4.4-cp39-cp39-win32.whl#sha256=fac3841b4db5f7b2f9aed5fd4cdf2021e01173a5e27611c1411752142c9a4c46 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,697   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/f7/2b4825646ab5c6afaa50858c97267cbc2b234b6e99a43d956924c6518f0e/gemmi-0.4.4-cp39-cp39-win_amd64.whl#sha256=2a87669bfc6e6c7d6286bb5c98a088d1ba16a7750499f4b8a40d61325e1ae7db (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,698   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/34/8bdb8d15ead8117585bec881c80a62983fbd74ebc1b08bf164f15d5f97c7/gemmi-0.4.4-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=f1fbbf7470e4ec8e8c057bcc2f16be115c9a5bd7b4480bbb5f03381076bca1b4 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,698   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/14/dd376612fc3899f68d83d60d1988f89402dd0c8f4a7010006b2f567f0d71/gemmi-0.4.4-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=be99ac15d21bfca31716f3865d8143c0d45809cf8523b40f1b4a72007a0d767f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,698   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/95/39/e1cdaf64ff7d3c7c7b7e186e3f9f32b9957dd9644263e0879555cc2aebe4/gemmi-0.4.4-pp36-pypy36_pp73-win32.whl#sha256=925bff4e17577aff037e442a29ccc6d20a8c434cccac3f8bf211206ab6166f30 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,698   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e8/37/89532fece5b13a637174902bf5719cc6546c77b19b6a26e0292fc7cf8898/gemmi-0.4.4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6d0ff856a6bfa077b0af51f677950b4fba8c3eab5edc6fd71637ed702e11819d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,698   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/68/be/1dbdfd3831075a2920c4c3cecb9178dba6f270d77995c773d65a8e16a701/gemmi-0.4.4-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=6435d1be8aac19664dea1383f8e7f5627eefc1a23b68bf3d6379ca540297fe36 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,699   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/7d/3c1fab59be120cdfb4d5f2500b58864c55467381533564babcd43f8fd012/gemmi-0.4.4-pp37-pypy37_pp73-win32.whl#sha256=fc6da7524c20947ac7c98923b039e6049d13ef3571140c829e90098bafd4279c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,699   Found link https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99 (from https://pypi.org/simple/gemmi/), version: 0.4.4
2021-07-28T20:37:07,699   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a3/89/62715a67fdbec732441eefb9ab39bd62f7f43334ac4015b791b977be68c5/gemmi-0.4.5-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=e1c4a7ebc11bda58fe37e3122014e6b759aa304e060a418b9d94e7fd7ad63a4b (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,699   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/39/c38fa021a44e9343cc886722365d453cf364e2a5a67c285bb328b20ff540/gemmi-0.4.5-cp27-cp27m-manylinux2010_i686.whl#sha256=fdb7369a6239325cd006b385e39f0b03fd0ae859e3836364448279b45f309f64 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,700   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f7/18/b755993b408896b60e4852f9107331006a1b99c83926a948c9b4b27aab32/gemmi-0.4.5-cp27-cp27m-manylinux2010_x86_64.whl#sha256=920123a13367dc00b75835be38a88cb4ff58b73075f0455267b9d89e294e205f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,700   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/57/51/0c582b5adc6cb799a6b87766c498fe7144f792cba2c70b6e4ff31542e874/gemmi-0.4.5-cp27-cp27mu-manylinux2010_i686.whl#sha256=0c7121d24a39f704f2a714b5242bba2f492101ddd8aab8bb2ba6a2b7bb70a261 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,700   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/a8/12c264b0b6d417ac551fdceb2fd5ac3e0bb2e2a83f4931c8f86135b2df4d/gemmi-0.4.5-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=5b5b40c5289affee9549ce07edcdd7e2757f0852462b2c25847c5a2769f22d02 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,700   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/b2/660f35b80809bd4f75f2b8f5dd356f1b3b3ee6b999e6811743c68c0dc308/gemmi-0.4.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b091810784901da3db22eb8706f4b1a6dcc6b562a1178db3fd5a62ee80055832 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,700   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/55/44/f25c57803987a15bea2c24d638da47e8e778fd53acb194e1757523778938/gemmi-0.4.5-cp36-cp36m-manylinux2010_i686.whl#sha256=6dbb7b44a65b6803eb0b47c0bd842c9437d7c1f35f2313f8d3714d4b59fd6cce (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,701   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/09/9d/58f15c2552bfc071f973eec23499c9d6a1b8dc0ce60c7997e49a7402ec91/gemmi-0.4.5-cp36-cp36m-manylinux2010_x86_64.whl#sha256=a2c2f6058ae7c4886953bf86523dc47481db3ed7e1f3e9173716a3ee839eafcf (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,701   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/f0/bfa6c95e9071a4061d60c1240f6d5c1dccec497bfbc4a78e9dd0d5d261fa/gemmi-0.4.5-cp36-cp36m-win32.whl#sha256=04d83f14868b96d94c28552e29a63cff5ebd2dcc3cfaf187d23f4a92dd3ff5ea (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,701   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/11/448e121ac8ac7217b6f7cc570a6d26bc51d27858c78bc533b6c2a7640b8e/gemmi-0.4.5-cp36-cp36m-win_amd64.whl#sha256=6e8a0fc30a5ff29275df00f05a0e2c2a835ec11281f4f596cdbf6496957dcaa7 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,701   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/72/77ea0f799d73d54999181ddd615206492343ada2617996f7169acab168ec/gemmi-0.4.5-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=6e31f1d82cfa6efef5f41acf9e42aa79033ceac7ce43b3506b4fdec4768058d7 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,701   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/0b/52ea2dd8bb3d311e441674a79cee4dd490140865595473cb222096c8cdc4/gemmi-0.4.5-cp37-cp37m-manylinux2010_i686.whl#sha256=4585db43804da417733695d772fda639c291b7c0884782ecec4d1fe9b18ca7a3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/0d/a91f70f43b8a0732f82739b3abac31fc6d363c229395308205b87d383045/gemmi-0.4.5-cp37-cp37m-manylinux2010_x86_64.whl#sha256=2092e41ec84a4a46aa524d6d7757c8a4a605079046fce66fb54dfb8c0e5bf7d4 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/72/1e/57b1c8dd3d6b918198328579e69ce68f7b0df2d7021fe9b7dac55d7e9cb6/gemmi-0.4.5-cp37-cp37m-win32.whl#sha256=31c587ea6e759cbab910b61fca9915cc5f43b57ffc7b8f476aacff50a4e85fe4 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/54/26/3683d8c49bae1ee13b96911f28006a90163eb65778695c2e67939c4bc37c/gemmi-0.4.5-cp37-cp37m-win_amd64.whl#sha256=a699bd63fc23a69491e07380a4dc7ffe4413c8c2d713f47e47fda375611491f1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/69/e1/b12f90c4962282c329afdc1a4c9cb7475dda068ec1e0a815209010621c83/gemmi-0.4.5-cp38-cp38-macosx_10_9_x86_64.whl#sha256=4d631c4d619a2d541fa782dc4cd80d890f9ab035f752ef3df6382c9410c8f445 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/49/90/276372a683c5687081103062ebc8e535181d9eff9ecf4eee42c9081be19f/gemmi-0.4.5-cp38-cp38-manylinux2010_i686.whl#sha256=856373e20c79a00d584663b382f94c04f4420680ebb110bc4a53c2c0eeb9e0c6 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,702   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/e5/da6409d8b6d9850036c3ef87e460336c6231b1e0c3bb95f34dd0aaf3836b/gemmi-0.4.5-cp38-cp38-manylinux2010_x86_64.whl#sha256=623b9c2ae4d79d5e7a884e77fc280a27548ca9e38f48b7bae2b0f34173bb1f68 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,703   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/8e/1764f1045f32c0bfb1d2901ac8b75fbe97e1e392b355ee9af815cf38ef57/gemmi-0.4.5-cp38-cp38-win32.whl#sha256=157f6912317fdf5d67f357295791f6bf09c65807a32869bfe0e727284bc292fc (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,703   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/2f/73a7b609eac9a9c71e7bff951c2e100e407da14c5a214dc18eda13eb4141/gemmi-0.4.5-cp38-cp38-win_amd64.whl#sha256=95d0f2513b337665e83c5c597b6e173f4652aa3a9020dd6d8dec354ef3384028 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,703   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/12/d4/4208b738e30605318d8f26090bc4380846040f98ded22271e7e4ca46d2c5/gemmi-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl#sha256=22798169f42d28791944b02590495ecbe351f42355aa772f7c3f66bf2b3945bd (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,703   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/af/ce/ab46b8088defeb988d95646598ba860a8a627231198d45ce61a3605ba00b/gemmi-0.4.5-cp39-cp39-manylinux2010_i686.whl#sha256=1922f1bf704a4ec26370cac149de8134a2daff3556196f2e833c1aeeac0e792d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,703   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/43/2c/663a099339e2bc8294891757038496434774ac16c65a2798cc431e206a55/gemmi-0.4.5-cp39-cp39-manylinux2010_x86_64.whl#sha256=801817242e73e7941c9e3f1279f55d3b6e29bfe66aa3585347287198133c1460 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,704   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/f1/13a68d2f9a11b3664e0e1de4d79326cd67862bca4f5c49ee4bef2514b9db/gemmi-0.4.5-cp39-cp39-win32.whl#sha256=9905d8f5f4e8f51c58c4a66d6b925e2896e9884e7cb2ef88d5b2188d3c9d163e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,704   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e5/82/f72b3028dd1a01369dab40d8943011dd96bd56d7d019b848b9545345a50b/gemmi-0.4.5-cp39-cp39-win_amd64.whl#sha256=8ea3999c416085cbbb373a30bde468e215c3db0c2506a0df71700a7a3333c50d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,704   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ee/6c/c0b2f77136489e9aada94adf29c586fa51e982d63cb162b71f598aa52e4a/gemmi-0.4.5-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=38d0270275c0f846ebd8af070a829fde935553fc0b9234a34a424afcf514aa61 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,704   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2b/62/0b7d622c7961f0df3818fd1e56d398c7c723ddacb9eaf864d1c729fc8e22/gemmi-0.4.5-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=551e99ff2f9ee59edd78e7b28cbf13e123aeae2b698d7eac3464db0e7a2298b1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,704   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5c/b1/c48b5b6c866bc104ad5ad0667d4133d9185a982928235270332fb8a21436/gemmi-0.4.5-pp36-pypy36_pp73-win32.whl#sha256=904dc646c8452ed4db7af53ec85aa3920bf3198bc58ee7ddead55d5368c79c23 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,705   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/13/721e4b76e5db2f9549ba22f0c42181d25c936a9a7d17ad2640aaf91ee38e/gemmi-0.4.5-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=9faaa0bdf8c884bb4ae6d765995dd61ddd1592644aa86fdaab8d3870622db4b5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,705   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/e5/ac1318a6fdd197e1a1b039658efb59afbd1abbb44ea9789fd0c6b9b49724/gemmi-0.4.5-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=e1a09762126bad2f4aa0e9b3f68459ab1205f244bd4d306dc9b4ea8f9290e03e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,705   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/bf/c3c250e76b72ececf8b9b4c46c5d53bf2f321a97137bda5c791061b2eb4d/gemmi-0.4.5-pp37-pypy37_pp73-win32.whl#sha256=9fd2954c6eb5b6612096bc315508a8bc79e03c84b924d4c68f8a3e82f635dbc3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,705   Found link https://files.pythonhosted.org/packages/cb/de/3009e2c600cdface74bc3cd3a61abe573a1795494884caabce654f7d9b67/gemmi-0.4.5.tar.gz#sha256=3add3d4a24237b0d80499aea92d21d361aa1603a8fed01f076815321a2a1cf58 (from https://pypi.org/simple/gemmi/), version: 0.4.5
2021-07-28T20:37:07,705   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/fc/4278f6a11da18b4797458633032cb0a7e8babfd94e69285761ede60f972c/gemmi-0.4.6-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=083116a92e0fbfa4373de32be3e43e01ca1d1e6be86b7c6ef173c3ea553861b5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,706   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3f/2b/9f4b2fa9e86ad506c5d66d1e6eb2b2e71fa2895f2675250f0a8f314ad322/gemmi-0.4.6-cp27-cp27m-manylinux2010_i686.whl#sha256=1473bcd63ddc6df187c0f86d8a6e868525b4280b1c66f6f50c1ab25d5e722393 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,706   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b6/7f/10630937c391f27987c18f19aa42c4594ddb39e0b0f5302f0dfec4aa4428/gemmi-0.4.6-cp27-cp27m-manylinux2010_x86_64.whl#sha256=a9447f119c5e0d27ab9caf0926837c973b062d5949ff885bce1adf813bb77514 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,706   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d6/fb/798923bf3741e91253a24491049b57590469a7f50cb3cc9253fcf60945d0/gemmi-0.4.6-cp27-cp27mu-manylinux2010_i686.whl#sha256=82b61383fc8481a5fde3260b026f238c625515a1ed9f302dc5a662bedd4a1551 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,706   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3d/74/b4ea05a4bf76367e0ad27b4c5bc02c2ed31c32bdd2386378d72c90175c59/gemmi-0.4.6-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=e0ef1e691b9069a30e1fe0570d4ea511e6699c759bc42281f332ac4d6629902c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,706   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/10/23fa05a07b6df83608aa59cc238f74e84d8058ad2ae310bdbb47d1c81f85/gemmi-0.4.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=59e6a23c19f68f57a352bde9da0725932d37c6b6aacdb7039a173433b5f57b01 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,707   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9c/55/e8ba86967640ea9c436a8dda39164837d45e7ee5f7fe6688ec9e52ceec81/gemmi-0.4.6-cp36-cp36m-manylinux2010_i686.whl#sha256=a55404ede320c7f1ae9167a07c8f7ff8d3d94bf447a3128620f82bf26a453dd1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,707   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/03/7cd6b99f2d8ce8ac485e7550e476ff0d752b5743486de3a953ba162f8ae7/gemmi-0.4.6-cp36-cp36m-manylinux2010_x86_64.whl#sha256=1865ae6bbab2e2ba60dd2583e97279ab8a792218ce6c66f1d793c44580900cb5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,707   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ed/2d/e80e5393bfaea7be595bcf6ace407e0042b28496e510b38395476c9a7836/gemmi-0.4.6-cp36-cp36m-win32.whl#sha256=bb7e17fafed5a23aeedb8d85d838bcb175353d3c5d105ec808f16599c52e6324 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,707   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/1c/1ebdff39cfc9cecab2445b22e1b480d458c253dac3e9017c3d76451e908f/gemmi-0.4.6-cp36-cp36m-win_amd64.whl#sha256=0fad8b9e630bf333eaa150c38ef5321f1d25f5892e2d72a6250095b41d9831c0 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,707   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f0/1a405fed888d6d3aba90bfcdf11b6e12655202b728ff2a035e3f5ff11297/gemmi-0.4.6-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a3aabd2b9ef0b9b78b257dcf42d19e5eadd139dab04738ad5809b2ff2148dce1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,708   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/51/51/71162451f2e331bd46c154b2673f38823559e90989d5e5c1196f8fd9565b/gemmi-0.4.6-cp37-cp37m-manylinux2010_i686.whl#sha256=f460efe7d9196a4c739b884589f5db3598735881070d0099a3e3980fd14da1e9 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,708   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4b/29/d5b7a27bad71957f41c644c3c19637f0d9fefabbbc4c501cf6be1eb0537c/gemmi-0.4.6-cp37-cp37m-manylinux2010_x86_64.whl#sha256=c1c06a78d7dbd6806644063ce29e8c2a5fcdfa5af8e60986a0db5e2d03ef57db (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,708   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/e8/506e69e5caaf93daf0e9429f2379a16ff07d39b76916944f492d7fe369a0/gemmi-0.4.6-cp37-cp37m-win32.whl#sha256=2bf2d9f46c4bc5cb5804ca92818b4a025f68c6d1c101e839fe3810f58c2a6ba2 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,708   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/21/cd910ccb94c96cc6608e109eead1645be18715b4699382aae51604464b71/gemmi-0.4.6-cp37-cp37m-win_amd64.whl#sha256=bfcffee0607e0644fe5403b3e327ae0716479466eb04c88987c50d9ff368a8af (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,708   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/df/e72a1f1be72b6a3ff8f4def21ec8b31ac56c77bad1b871386fc8028115dd/gemmi-0.4.6-cp38-cp38-macosx_10_9_x86_64.whl#sha256=6dbf6ef26cf0c8d789099c8cfbad5b87d3f740b0adce638c7b5659373db1675a (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,709   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/56/cd/c2fe5e0c0673c734db137d12d45ade2a16de88a68772926ddff4ce230ac6/gemmi-0.4.6-cp38-cp38-manylinux2010_i686.whl#sha256=62a9cb3f4b44beabc38455e70531b202c0fbffe5591678d72a7e1c9b32ea3755 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,709   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/08/607d0949bb3e508feb63d71dcb16c8cc54b146d5d020e228b90db69f44c0/gemmi-0.4.6-cp38-cp38-manylinux2010_x86_64.whl#sha256=4827bae4bd2facbc7025a1eff48bbea5b43b68d2868a219ab94acd62f7083233 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,709   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0e/cd/df5f9d994a9b20ea68cc6efb0892011d870db72ec985c77df6298f3ca836/gemmi-0.4.6-cp38-cp38-win32.whl#sha256=f357a0b5e91a1b3ac519ee3ddd9f5e6a7bd5941d00cba4678102567c4558ba31 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,709   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1a/4a/6a4e5db1bdc3be1a1cb6c0c21193d981ea5fa2991058b4ceb7454a9cb520/gemmi-0.4.6-cp38-cp38-win_amd64.whl#sha256=49c6c5c4d851b2751ff69c57a87ef6928beb9c20dd69b109e6416cc91a0401cb (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,709   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/75/1b/306f7baf0785078f809c12c85652537545fc0f3320c914371ffc712f19e3/gemmi-0.4.6-cp39-cp39-macosx_10_9_x86_64.whl#sha256=60c85798ae45505c196dc905b1c742c03ace32369de821aa9066081a7c8234a2 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,710   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/d8/c37aa4a871b46ee81ffc34ffa612f917fe5ec1db64245cb4d050e5d0b827/gemmi-0.4.6-cp39-cp39-manylinux2010_i686.whl#sha256=4a3002520dec779632c877de825ff566ff704973d6cf645dd7d7acf1b8db9116 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,710   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ec/94/8d880d7694f846d9a480b504e4cc4f121055b001e6d2d9070102782bde74/gemmi-0.4.6-cp39-cp39-manylinux2010_x86_64.whl#sha256=39069e5abd4b44345c17008c6241f844c7c1fcf5240193f13dbd98d42e5c0b86 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,710   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/07/ef/2b5075478d09a0c9a688507124642f7e8a99d51d46c6a8dfffc9a9d9ff8a/gemmi-0.4.6-cp39-cp39-win32.whl#sha256=dde1b7a027fc4aeba200a746322a3d9cca4e26f0770498e521c085099c198b4f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,710   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/92/fcae326c99c89b286efcba8cd0c95e125f6ba909c2550ab23ad1e8377cc0/gemmi-0.4.6-cp39-cp39-win_amd64.whl#sha256=c29e9dbb8fb7780a70fd54cc95858d3074f01edbaa3efffe6495d8cd094d4362 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,710   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/24/8b/e39db36831a95644e89dea92bdd451ec6568b4e506ff9c2194cafd38d56f/gemmi-0.4.6-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e1eb99f57b6085a617d5cc839c88059853f6f77dce7aaab6cf5fe021be2b03d1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,711   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/0a/d8cb7a05a6e3f199e0363e61e8cfc369820ea6adc84affc94a9363dec59f/gemmi-0.4.6-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=fa3b71f7fc98ff8b00d089be5955d0f155a48dc6af6f1616af9b5554fb27e86f (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,711   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/53/fa/89eabf0dbbaf91fbfc99bffcb3d603474bc6cd1ef9615e3f3213cd0cfe9d/gemmi-0.4.6-pp36-pypy36_pp73-win32.whl#sha256=3908ec8add86f3cca774bb1e98dcb77fa3c87b5ffc6bc87601dddff296a9abfc (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,711   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/de/a01cc76fdb904af071b74b404daedeedb9fd215609f18e2104e9ec42cabb/gemmi-0.4.6-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=29d4cce47e85736c100d7354c142f0b0d1ba0f7e95e5cf1daefee4fc21913eec (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,711   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/c0/22d5631bb9cf8af0c9a613987e4adaf670730c2af9878dcd49a8503aece8/gemmi-0.4.6-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=628366463a723a97af0506cfaeba4eaf4208609f9ad7410215844e8051471fff (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,711   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/79/86/a7bd5d5c766a719319244373bf8e455bf85993e67230341de9be0b3631d8/gemmi-0.4.6-pp37-pypy37_pp73-win32.whl#sha256=432f3d7ec36725eaeca3a7fe455e99f741f5582cb3bef29f3c7df539618b3192 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,712   Found link https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 (from https://pypi.org/simple/gemmi/), version: 0.4.6
2021-07-28T20:37:07,712   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/86/cdff573b699036edc8ca9f7d83f3f40736ef17ea79726e1b2de7debcd72e/gemmi-0.4.7-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=16038c4f997850ec80ec26e1da46d79ca7ca691958a7b9d8b4af48de5d976f5c (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,712   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1c/6b/786e51debc4e0e199c67fb5a00972f02c6b0e01fdbf6ad19b726fba6a669/gemmi-0.4.7-cp27-cp27m-manylinux2010_i686.whl#sha256=bda0dc61a1352e1eb23e6109664518b4e121fb50d29cf49f96b82f9dcc446516 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,712   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/51/99d207e130a212b2bccdc179a4e78a8ceaade11f5ee15c2f4ae3f6d4ecf2/gemmi-0.4.7-cp27-cp27m-manylinux2010_x86_64.whl#sha256=e77c0c838e7f3e6c44bbc5a85be8f446a199a0a705ed4fc1ea0b5416292725d5 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,712   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a2/cd/2fa705d106c5c08b541db9c65bb12f237930bc504995c04e055e8f8c2a50/gemmi-0.4.7-cp27-cp27mu-manylinux2010_i686.whl#sha256=96c08fa68e0282cb4531057752e2d00d5d124797e7b7ecc995bb0732ea56d437 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,713   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6e/1d/85b0771c0235f82fef9df78050e5b22c8b92f89a587af1b4b6b5738fd94c/gemmi-0.4.7-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=ff0abceaddb65944c6331d74788287513a90791b0cb054f6ac49b2a9bfaa7ce3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,713   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/05/20ac362a07e783d571cc65efaf1b3ee539ec28e73985da6a059252b620e3/gemmi-0.4.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c06e129a26b6360f9701a25d36a9f13396bc1bb85364f0e48e2fbdb7e043ae25 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,713   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/af/06d6cd6ce75983ccf4076846eaaf4a586964cfe121f3f767f7d7891f6bfe/gemmi-0.4.7-cp36-cp36m-manylinux2010_i686.whl#sha256=0dddbad6f0d23c466ea5ebc2d30756a9ebc85ddea9233b45403639a9b7e366d3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,713   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a5/61/c8e2ec5bd6d1b6288aa541edc603f43f9248a83f9ca470383d739d7d7adf/gemmi-0.4.7-cp36-cp36m-manylinux2010_x86_64.whl#sha256=b9a8217cba556d234d61bf63fd6acd0607c5826360cde7f45556b72f6b0339a8 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,713   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/c5/83d1c9084eab480c13849462e0f211d74d2aaefd0832e33a42099e4dc7a4/gemmi-0.4.7-cp36-cp36m-win32.whl#sha256=a6b29a96e67222d9f4980163c23b4482e239f8470f03508ce16efe9df892a42b (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,714   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/b9/f336e9522b8375f5e3ca8f02da39a1b3e5a62aa062ca63136c267a69f2ba/gemmi-0.4.7-cp36-cp36m-win_amd64.whl#sha256=c52da00dff031b357be636a128b84d26bcf071ee4735a58d577f445306963e8e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,714   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b3/54/4c0dd5642138b078b208fcd9600fc32e2d412b8945bc5b82fc74cbef20fe/gemmi-0.4.7-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b7f0d0a584c8bc893aee3a421692ead518fb647246067032869e154e1f60432e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,714   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/25/91/ba6367b2cdd3e7ae0400acecb3a8b9ec714a03850eec8023aa41f6124ff7/gemmi-0.4.7-cp37-cp37m-manylinux2010_i686.whl#sha256=56b2315724960c586e1c94af31f614fb656e123432e3d157166dfe5bd6ed9ea6 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,714   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/62/5e843d8e0706d9a1afadad6d8154e837f885aeea77ce72b55a7d88fe5cb3/gemmi-0.4.7-cp37-cp37m-manylinux2010_x86_64.whl#sha256=839e221500da009a66190c21a431b29737be8097e669d3984c3b9c2c4546f5bc (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,714   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b0/ed/c10ad32ec19e1a81c3cf7a7d5b8e511253ed8afc6c304e03ac5fb2fe7457/gemmi-0.4.7-cp37-cp37m-win32.whl#sha256=b1e8067b68223d94fe400a22737a235ba56b3f897383c3e24da5f5756c271cc3 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,715   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1a/79/1156866fe02ba91633024c90fceb20daae7cacdd1f13a089d52dae1b9d75/gemmi-0.4.7-cp37-cp37m-win_amd64.whl#sha256=3df4ec6a53767fe9fac92dc80cbdb19eae8eb5beb2c2a280628760783d0c3e06 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,715   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/86/8d3c3302d1bfc07187fb2c049ff130c9e512c3039a806ed2dbd5e2975efa/gemmi-0.4.7-cp38-cp38-macosx_10_9_x86_64.whl#sha256=862fd1975e2a1a0013bb5801c8f563645e4ce7b27785e2c5e893080705251965 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,715   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4a/1f/df29f693708477accb02e7aa314f31838b2706ce7c8ddb42c95273760a88/gemmi-0.4.7-cp38-cp38-manylinux2010_i686.whl#sha256=3f1d3c9814c1ae40595f515214c27a454dfa207c58b6094e16eeb314b4fb42b9 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,715   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/50/5d/45b02fecc8de9ea01860f3619954b8f97d702a25d21b59c782b2d0a081c0/gemmi-0.4.7-cp38-cp38-manylinux2010_x86_64.whl#sha256=d8dc0b2580d9a8afe10ac895e8494aedf42231ea4b8d7f1b2e7a194c0cfb01e1 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,715   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/5a/d7ef0e8daa496d1e7297fade11e9ef751b525e5e6a26aeaa53fc23acf98f/gemmi-0.4.7-cp38-cp38-win32.whl#sha256=7b23b20c1ff83b88f8d4f61ff3477716a8b5ff495c8e4166e03fb0e9ac769109 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,716   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/84/862810ac717e018ac4cb77860a565b40a6a072afae12e54c0c1fee2d846c/gemmi-0.4.7-cp38-cp38-win_amd64.whl#sha256=dfd4df4a87c20510c955688ba410130d631c8fe7301fa93c59ba5252027897c0 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,716   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d0/27/60f1014c10675300a44b83b9d9b6da47cbed148c9420cd407b89aca042db/gemmi-0.4.7-cp39-cp39-macosx_10_9_x86_64.whl#sha256=fe79f317d9b6e425326d64c310a22942ad7946ff6f422b62b363d12b188fb48e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,716   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/67/e3/3544831741bf92df12d53c16c10257fea7d8a5752c9212e1d6acf1359e0d/gemmi-0.4.7-cp39-cp39-manylinux2010_i686.whl#sha256=aea435633c2af30b3075594deacd256df55fec879d3cae484ea1dd715424509d (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,716   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d9/22/01d397b6c9298ceeabf12c25291afba0a04841a8ee847048136afed56f49/gemmi-0.4.7-cp39-cp39-manylinux2010_x86_64.whl#sha256=75df0a37120f34c4e8c7a9787e5aec4dd951491d870ed1167e45039a28b7e030 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,716   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f2/59a58c53ea47f850008b60b059eb3a181cc05fd3d6a0abafbdbe8ad0b093/gemmi-0.4.7-cp39-cp39-win32.whl#sha256=867a7d5849c87f8e7e20e7806bc50abc372895548ecdbd29d15c0715d9459eab (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,717   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/32/48/f29a0b98b00d7f3a3cf6b7b194f77eab3cbb83a630be8cbc4fdb2d23ff04/gemmi-0.4.7-cp39-cp39-win_amd64.whl#sha256=bf08a3c86fd9a1753416ce59198bb92dfbc74448fd4068e58ac460fd49f2a7bf (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,717   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/9c/f6426743545f32e53190ca22d524819dff6b24ca98fc5c164da1db23f6db/gemmi-0.4.7-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e9c86f832f8f7def7941551e93b4a8b7fbd22ac6bdd5d42cd713941dc4270c4a (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,717   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ab/07/ea64580e7ed5ce8f2d1db56bf901e9d169d58d4dc52061d5453f6947b8ef/gemmi-0.4.7-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=b57ac1e854b3ff654c13463b6dc9204b489f274b7bc1b6cca80ccd3d7b90925e (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,717   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e4/7d/fc555f63e4842fe2411b7b5add1abb0dd0991f9c8b12a7adf98135531aa3/gemmi-0.4.7-pp36-pypy36_pp73-win32.whl#sha256=c5ae05194dfb35c8665a271aa954be0046b65697e399b1ab35ba0c8239b48269 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,717   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/b3/351231310fb90d16a1a443001a66be62ac3cc357f61c3c33e55ab55552e3/gemmi-0.4.7-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=2c6ec713141da611bf36a84248660d9c1ab49b451359649926f59aee459c9a25 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,718   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/59/87/54699b9751a3d1df8f0495ebf3d94de0c2c43a4890a4f00872e1217eb466/gemmi-0.4.7-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=567d1b48e10bfe4f056f9c74aa07fd355954bfa7308eac7dc10c9e3e8101a910 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,718   Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/df/ea/e01a008a71fdb8fe566ec35e322fc2b85067f5158156b54e676f33386b69/gemmi-0.4.7-pp37-pypy37_pp73-win32.whl#sha256=d33a9bf473c446c71b9781fed07efc50fc80305dca26c933971c1ad0d7227768 (from https://pypi.org/simple/gemmi/)
2021-07-28T20:37:07,718   Found link https://files.pythonhosted.org/packages/1a/6a/57ab433972758026e23b70317c45e6dd3d8d5e3b613395222cfc1c66f8e0/gemmi-0.4.7.tar.gz#sha256=22b94c35e5cd807fcdadd3e548f0ddf11dc1b4c5550e3a1359cffdb3e1fc9d14 (from https://pypi.org/simple/gemmi/), version: 0.4.7
2021-07-28T20:37:07,718 Skipping link: not a file: https://pypi.org/simple/gemmi/
2021-07-28T20:37:07,740 Given no hashes to check 1 links for project 'gemmi': discarding no candidates
2021-07-28T20:37:07,758 Collecting gemmi==0.4.4
2021-07-28T20:37:07,760   Created temporary directory: /tmp/pip-unpack-pycfvn3_
2021-07-28T20:37:08,023   Downloading gemmi-0.4.4.tar.gz (588 kB)
2021-07-28T20:37:08,865   Added gemmi==0.4.4 from https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99 to build tracker '/tmp/pip-req-tracker-vizw7ff6'
2021-07-28T20:37:08,866     Running setup.py (path:/tmp/pip-wheel-larjdatp/gemmi_636d3e7218074cb8b98851ccee18ec49/setup.py) egg_info for package gemmi
2021-07-28T20:37:08,867     Created temporary directory: /tmp/pip-pip-egg-info-_ro15vr6
2021-07-28T20:37:08,868     Running command python setup.py egg_info
2021-07-28T20:37:09,807     running egg_info
2021-07-28T20:37:09,809     creating /tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info
2021-07-28T20:37:09,809     writing /tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/PKG-INFO
2021-07-28T20:37:09,812     writing dependency_links to /tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/dependency_links.txt
2021-07-28T20:37:09,814     writing top-level names to /tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/top_level.txt
2021-07-28T20:37:09,816     writing manifest file '/tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/SOURCES.txt'
2021-07-28T20:37:09,967     reading manifest file '/tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/SOURCES.txt'
2021-07-28T20:37:09,969     reading manifest template 'MANIFEST.in'
2021-07-28T20:37:10,099     adding license file 'LICENSE.txt'
2021-07-28T20:37:10,114     writing manifest file '/tmp/pip-pip-egg-info-_ro15vr6/gemmi.egg-info/SOURCES.txt'
2021-07-28T20:37:10,194   Source in /tmp/pip-wheel-larjdatp/gemmi_636d3e7218074cb8b98851ccee18ec49 has version 0.4.4, which satisfies requirement gemmi==0.4.4 from https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99
2021-07-28T20:37:10,196   Removed gemmi==0.4.4 from https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99 from build tracker '/tmp/pip-req-tracker-vizw7ff6'
2021-07-28T20:37:10,203 Created temporary directory: /tmp/pip-unpack-6mwc6bml
2021-07-28T20:37:10,203 Building wheels for collected packages: gemmi
2021-07-28T20:37:10,220   Created temporary directory: /tmp/pip-wheel-3zn6o085
2021-07-28T20:37:10,221   Building wheel for gemmi (setup.py): started
2021-07-28T20:37:10,222   Destination directory: /tmp/pip-wheel-3zn6o085
2021-07-28T20:37:10,222   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-larjdatp/gemmi_636d3e7218074cb8b98851ccee18ec49/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-larjdatp/gemmi_636d3e7218074cb8b98851ccee18ec49/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3zn6o085
2021-07-28T20:37:11,216   running bdist_wheel
2021-07-28T20:37:11,221   running build
2021-07-28T20:37:11,221   running build_py
2021-07-28T20:37:11,363   creating build
2021-07-28T20:37:11,363   creating build/lib.linux-armv7l-3.9
2021-07-28T20:37:11,364   creating build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,365   copying examples/weight.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,367   copying examples/cif_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,369   copying examples/col_order.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,371   copying examples/from_json.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,373   copying examples/maskdiff.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,375   copying examples/long_geom.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,376   copying examples/rama_plot.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,378   copying examples/ccd_subgraph.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,380   copying examples/mtrix_iso.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,382   copying examples/map2mtz.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,384   copying examples/__init__.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,385   copying examples/matthews.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,387   copying examples/mtz_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,389   copying examples/merge_mtz_mmcif.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,391   copying examples/aafreq.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,393   copying examples/ccd_gi.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,395   copying examples/monomers.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,397   copying examples/sub_ccd.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,399   copying examples/__main__.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,401   copying examples/simple_search.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,403   copying examples/rama_gather.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,405   copying examples/patterson_slice.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,406   copying examples/hello.py -> build/lib.linux-armv7l-3.9/gemmi-examples
2021-07-28T20:37:11,410   running build_clib
2021-07-28T20:37:11,417   building 'gemmi_zlib' library
2021-07-28T20:37:11,418   creating build/temp.linux-armv7l-3.9
2021-07-28T20:37:11,418   creating build/temp.linux-armv7l-3.9/third_party
2021-07-28T20:37:11,419   creating build/temp.linux-armv7l-3.9/third_party/zlib
2021-07-28T20:37:11,420   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/adler32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o
2021-07-28T20:37:11,775   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/crc32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o
2021-07-28T20:37:12,189   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzlib.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o
2021-07-28T20:37:12,663   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzread.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o
2021-07-28T20:37:13,252   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inflate.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o
2021-07-28T20:37:15,107   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inftrees.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o
2021-07-28T20:37:15,456   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inffast.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o
2021-07-28T20:37:15,835   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/zutil.c -o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o
2021-07-28T20:37:16,042   arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-3.9/libgemmi_zlib.a build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o
2021-07-28T20:37:16,077   running build_ext
2021-07-28T20:37:16,086   creating tmp
2021-07-28T20:37:16,087   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp8cvupg34.cpp -o tmp/tmp8cvupg34.o -std=c++14
2021-07-28T20:37:16,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpqgyl32wv.cpp -o tmp/tmpqgyl32wv.o -fvisibility=hidden
2021-07-28T20:37:16,262   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp4q7bmvd5.cpp -o tmp/tmp4q7bmvd5.o -g0
2021-07-28T20:37:16,345   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpupss98d_.cpp -o tmp/tmpupss98d_.o -Wl,-s
2021-07-28T20:37:16,428   building 'gemmi' extension
2021-07-28T20:37:16,434   creating build/temp.linux-armv7l-3.9/python
2021-07-28T20:37:16,435   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/align.cpp -o build/temp.linux-armv7l-3.9/python/align.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:37:42,069   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:37:42,070                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:42,070                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:42,070                    from python/align.cpp:3:
2021-07-28T20:37:42,070   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Position&}; _Tp = gemmi::Position; _Alloc = std::allocator<gemmi::Position>]’:
2021-07-28T20:37:42,070   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Position>::iterator’ changed in GCC 7.1
2021-07-28T20:37:42,070     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:37:42,070         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:37:45,722   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:37:45,723                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:45,723                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:45,723                    from python/align.cpp:3:
2021-07-28T20:37:45,723   /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SupResult gemmi::calculate_superposition(gemmi::ConstResidueSpan, gemmi::ConstResidueSpan, gemmi::PolymerType, gemmi::SupSelect, char, bool)’:
2021-07-28T20:37:45,723   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-07-28T20:37:45,724    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:37:45,724         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:37:45,724   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-07-28T20:37:45,724    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:37:45,724         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:37:45,724   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-07-28T20:37:45,724    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:37:45,725         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:37:45,725   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-07-28T20:37:45,725    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:37:45,725         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:37:48,014   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:37:48,015                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:48,015                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:48,015                    from python/align.cpp:3:
2021-07-28T20:37:48,015   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’:
2021-07-28T20:37:48,015   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:37:48,015      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:37:48,015         |         ^~~~~~~~~~~~~
2021-07-28T20:37:48,016   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:37:54,730   In file included from python/common.h:3,
2021-07-28T20:37:54,730                    from python/align.cpp:7:
2021-07-28T20:37:54,730   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >; Sentinel = gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’:
2021-07-28T20:37:54,730   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:54,730    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:37:54,730         |          ^~~~~~~~~~~~~
2021-07-28T20:37:54,731   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:54,731   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:54,813   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Type&, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Type = gemmi::FilterProxy<gemmi::Selection, gemmi::Atom>; Extra = {}]’:
2021-07-28T20:37:54,813   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:54,813    1986 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-07-28T20:37:54,813         |                                                                              ^
2021-07-28T20:37:54,813   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::FilterIterPolicy<gemmi::Selection, std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:59,108   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:37:59,108                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:59,109                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:59,109                    from python/align.cpp:3:
2021-07-28T20:37:59,109   /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster<Type, Value>::load(pybind11::handle, bool) [with Type = std::vector<gemmi::Position>; Value = gemmi::Position]’:
2021-07-28T20:37:59,109   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Position*, std::vector<gemmi::Position> >’ changed in GCC 7.1
2021-07-28T20:37:59,109    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:37:59,109         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:37:59,218   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:37:59,219                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:59,219                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:59,219                    from python/align.cpp:3:
2021-07-28T20:37:59,219   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:37:59,219   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:37:59,219      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:37:59,219         |         ^~~~~~~~~~~~~
2021-07-28T20:37:59,220   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:37:59,328   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:37:59,328                    from include/gemmi/model.hpp:15,
2021-07-28T20:37:59,329                    from include/gemmi/align.hpp:8,
2021-07-28T20:37:59,329                    from python/align.cpp:3:
2021-07-28T20:37:59,329   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:37:59,329   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:37:59,329     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:37:59,329         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:37:59,519   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Selection::add_matching_children(const T&, T&) [with T = gemmi::Model]’:
2021-07-28T20:37:59,519   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:37:59,519     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:37:59,519         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:00,746   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:38:00,746                    from include/gemmi/model.hpp:15,
2021-07-28T20:38:00,746                    from include/gemmi/align.hpp:8,
2021-07-28T20:38:00,746                    from python/align.cpp:3:
2021-07-28T20:38:00,747   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-07-28T20:38:00,747   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:38:00,747      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:38:00,747         |         ^~~~~~~~~~~~~
2021-07-28T20:38:00,747   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:38:01,954   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:38:01,955                    from include/gemmi/model.hpp:15,
2021-07-28T20:38:01,955                    from include/gemmi/align.hpp:8,
2021-07-28T20:38:01,955                    from python/align.cpp:3:
2021-07-28T20:38:01,955   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-28T20:38:01,955   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-28T20:38:01,955     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:38:01,955         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,005   /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster<Type, Value>::load(pybind11::handle, bool) [with Type = std::vector<double>; Value = double]’:
2021-07-28T20:38:02,006   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-28T20:38:02,006     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:38:02,006         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,525   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:38:02,525                    from include/gemmi/model.hpp:15,
2021-07-28T20:38:02,526                    from include/gemmi/align.hpp:8,
2021-07-28T20:38:02,526                    from python/align.cpp:3:
2021-07-28T20:38:02,526   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:38:02,526   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:38:02,526      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:38:02,526         |         ^~~~~~~~~~~~~
2021-07-28T20:38:02,526   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:38:02,702   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-07-28T20:38:02,702   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:38:02,702     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:02,702         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,702     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:02,702         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,703     149 |            && __assignable>::
2021-07-28T20:38:02,703         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,703     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:02,703         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:02,947   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-07-28T20:38:02,948   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:38:02,948      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:38:02,948         |         ^~~~~~~~~~~~~
2021-07-28T20:38:02,948   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:38:03,052   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::RefinementInfo::RefinementInfo(const gemmi::RefinementInfo&)’:
2021-07-28T20:38:03,053   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:38:03,053     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,053         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,053     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,053         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,053     149 |            && __assignable>::
2021-07-28T20:38:03,053         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,053     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,054         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,173   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-07-28T20:38:03,173   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:38:03,173     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,173         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,173     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,173         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,174     149 |            && __assignable>::
2021-07-28T20:38:03,174         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,174     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,174         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,174   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:38:03,174     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,174         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,175     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,175         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,175     149 |            && __assignable>::
2021-07-28T20:38:03,175         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,175     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,175         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,325   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-07-28T20:38:03,326   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:38:03,326     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,326         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,326     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,326         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,326     149 |            && __assignable>::
2021-07-28T20:38:03,326         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,327     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,327         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,327   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:38:03,327     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,327         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,327     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,327         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,328     149 |            && __assignable>::
2021-07-28T20:38:03,328         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,328     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,328         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,545   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
2021-07-28T20:38:03,546   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:38:03,546     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:03,546         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,546     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:03,546         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,546     149 |            && __assignable>::
2021-07-28T20:38:03,546         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:03,547     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:03,547         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,513   /usr/include/c++/10/bits/stl_uninitialized.h: In member function ‘gemmi::Structure gemmi::Structure::empty_copy() const’:
2021-07-28T20:38:04,513   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:38:04,513     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:04,513         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,513     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:04,513         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,514     149 |            && __assignable>::
2021-07-28T20:38:04,514         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,514     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:04,514         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,523   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:38:04,523     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:04,523         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,523     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:04,524         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,524     149 |            && __assignable>::
2021-07-28T20:38:04,524         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,524     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:04,524         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,525   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:38:04,525     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:38:04,525         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,525     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:38:04,525         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,526     149 |            && __assignable>::
2021-07-28T20:38:04,526         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:04,526     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:38:04,526         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:38:06,241   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/ccp4.cpp -o build/temp.linux-armv7l-3.9/python/ccp4.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:38:36,475   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/cif.cpp -o build/temp.linux-armv7l-3.9/python/cif.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:39:26,463   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/elem.cpp -o build/temp.linux-armv7l-3.9/python/elem.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:39:47,376   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/gemmi.cpp -o build/temp.linux-armv7l-3.9/python/gemmi.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:40:05,844   In file included from /usr/include/c++/10/algorithm:62,
2021-07-28T20:40:05,845                    from /usr/include/c++/10/valarray:38,
2021-07-28T20:40:05,845                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl.h:20,
2021-07-28T20:40:05,845                    from python/gemmi.cpp:4:
2021-07-28T20:40:05,845   /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::SmallStructure::remove_hydrogens()::<lambda(const gemmi::SmallStructure::Site&)> >]’:
2021-07-28T20:40:05,845   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:05,845     833 |     __remove_if(_ForwardIterator __first, _ForwardIterator __last,
2021-07-28T20:40:05,845         |     ^~~~~~~~~~~
2021-07-28T20:40:05,846   /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:05,907   /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::SmallStructure::remove_hydrogens()’:
2021-07-28T20:40:05,907   /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:05,907     914 |       return std::__remove_if(__first, __last,
2021-07-28T20:40:05,907         |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2021-07-28T20:40:05,908     915 |          __gnu_cxx::__ops::__pred_iter(__pred));
2021-07-28T20:40:05,908         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:40:05,962   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:40:05,962                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:40:05,963                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:40:05,963                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:40:05,963                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:40:05,963                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:40:05,963                    from python/common.h:3,
2021-07-28T20:40:05,963                    from python/gemmi.cpp:3:
2021-07-28T20:40:05,963   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::SmallStructure::Site}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-07-28T20:40:05,963   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-07-28T20:40:05,964     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:40:05,964         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:40:06,119   /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::SmallStructure gemmi::mx_to_sx_structure(const gemmi::Structure&, int)’:
2021-07-28T20:40:06,119   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:06,119     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:40:06,120         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:40:06,427   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-07-28T20:40:06,428   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-07-28T20:40:06,428     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:40:06,428         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:40:06,594   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:40:06,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:40:06,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:40:06,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:40:06,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:40:06,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:40:06,595                    from python/common.h:3,
2021-07-28T20:40:06,595                    from python/gemmi.cpp:3:
2021-07-28T20:40:06,596   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<gemmi::SmallStructure::Site> gemmi::SmallStructure::get_all_unit_cell_sites() const’:
2021-07-28T20:40:06,596   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:06,596    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:40:06,596         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:40:06,596   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:40:06,596    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:40:06,597         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:40:15,370   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/grid.cpp -o build/temp.linux-armv7l-3.9/python/grid.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:41:12,917   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/hkl.cpp -o build/temp.linux-armv7l-3.9/python/hkl.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:41:42,113   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:41:42,114                    from include/gemmi/unitcell.hpp:9,
2021-07-28T20:41:42,114                    from python/hkl.cpp:3:
2021-07-28T20:41:42,114   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:41:42,114   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:41:42,114     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:41:42,114         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:41:42,115   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:41:42,194   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’:
2021-07-28T20:41:42,195   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:41:42,195     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:41:42,195         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:41:42,626   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::cif::Block}; _Tp = gemmi::ReflnBlock; _Alloc = std::allocator<gemmi::ReflnBlock>]’:
2021-07-28T20:41:42,627   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflnBlock>::iterator’ changed in GCC 7.1
2021-07-28T20:41:42,627     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:41:42,627         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:41:47,428   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_hkl(pybind11::module&)::<lambda(gemmi::cif::Document&)>, std::vector<gemmi::ReflnBlock>, {gemmi::cif::Document&}, {pybind11::name, pybind11::scope, pybind11::sibling}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:41:47,428   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-07-28T20:41:47,428     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:41:47,429         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:41:51,135   In file included from python/common.h:3,
2021-07-28T20:41:51,135                    from python/hkl.cpp:10:
2021-07-28T20:41:51,135   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >; ValueType = gemmi::ReflnBlock&; Extra = {}]’:
2021-07-28T20:41:51,136   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-07-28T20:41:51,136    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:41:51,136         |          ^~~~~~~~~~~~~
2021-07-28T20:41:51,136   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-07-28T20:41:51,136   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-07-28T20:41:51,223   In file included from python/hkl.cpp:13:
2021-07-28T20:41:51,223   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::ReflnBlock>, pybind11::class_<std::vector<gemmi::ReflnBlock>, std::unique_ptr<std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> >, std::default_delete<std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> > > > > >::<lambda(std::vector<gemmi::ReflnBlock>&)>, pybind11::iterator, {std::vector<gemmi::ReflnBlock, std::allocator<gemmi::ReflnBlock> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:41:51,223   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflnBlock*, std::vector<gemmi::ReflnBlock> >’ changed in GCC 7.1
2021-07-28T20:41:51,223     318 |                    v.begin(), v.end());
2021-07-28T20:41:51,224         |                                      ^
2021-07-28T20:42:01,750   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/meta.cpp -o build/temp.linux-armv7l-3.9/python/meta.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:42:29,595   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:29,595                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:29,596                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:29,596                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:29,596                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:29,596                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:29,596                    from python/common.h:3,
2021-07-28T20:42:29,596                    from python/meta.cpp:3:
2021-07-28T20:42:29,596   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:29,596   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:42:29,597     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:29,597         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:29,597   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:42:29,656   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:29,656   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:42:29,656     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:29,657         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:29,928   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:42:29,928   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:42:29,928     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:29,928         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:29,928   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:42:30,068   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:42:30,069   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:42:30,069     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:30,069         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:35,671   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:35,671                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:35,671                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:35,672                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:35,672                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:35,672                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:35,672                    from python/common.h:3,
2021-07-28T20:42:35,672                    from python/meta.cpp:3:
2021-07-28T20:42:35,672   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, pybind11::slice)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:35,672   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:35,672    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:35,673         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:35,775   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, pybind11::slice)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:35,776   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:35,776    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:35,776         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:40,233   In file included from python/common.h:3,
2021-07-28T20:42:40,233                    from python/meta.cpp:3:
2021-07-28T20:42:40,233   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >; ValueType = gemmi::Assembly&; Extra = {}]’:
2021-07-28T20:42:40,233   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:40,233    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:42:40,234         |          ^~~~~~~~~~~~~
2021-07-28T20:42:40,234   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:40,234   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:40,310   In file included from python/meta.cpp:5:
2021-07-28T20:42:40,310   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&)>, pybind11::iterator, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:40,310   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:40,310     318 |                    v.begin(), v.end());
2021-07-28T20:42:40,311         |                                      ^
2021-07-28T20:42:40,433   In file included from python/common.h:3,
2021-07-28T20:42:40,433                    from python/meta.cpp:3:
2021-07-28T20:42:40,433   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; ValueType = gemmi::Assembly::Operator&; Extra = {}]’:
2021-07-28T20:42:40,433   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:40,433    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:42:40,434         |          ^~~~~~~~~~~~~
2021-07-28T20:42:40,434   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:40,510   In file included from python/meta.cpp:5:
2021-07-28T20:42:40,510   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&)>, pybind11::iterator, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:40,510   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:40,510     318 |                    v.begin(), v.end());
2021-07-28T20:42:40,510         |                                      ^
2021-07-28T20:42:45,091   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:45,092                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:45,092                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:45,092                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:45,092                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:45,092                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:45,092                    from python/common.h:3,
2021-07-28T20:42:45,092                    from python/meta.cpp:3:
2021-07-28T20:42:45,093   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly::Operator}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:45,093   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:42:45,093     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:42:45,093         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:45,183   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:45,184   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:45,184     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:42:45,184         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:45,345   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:45,346   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:45,346     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:42:45,346         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:45,346   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:45,346                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:45,346                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:45,346                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:45,347                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:45,347                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:45,347                    from python/common.h:3,
2021-07-28T20:42:45,347                    from python/meta.cpp:3:
2021-07-28T20:42:45,347   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:45,347    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:42:45,347         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:45,628   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:45,629                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:45,629                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:45,629                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:45,629                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:45,629                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:45,629                    from python/common.h:3,
2021-07-28T20:42:45,629                    from python/meta.cpp:3:
2021-07-28T20:42:45,630   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:42:45,630   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:42:45,630     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:42:45,630         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,081   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:46,081   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:42:46,141   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:46,141                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:46,141                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:46,142                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:46,142                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:46,142                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:46,142                    from python/common.h:3,
2021-07-28T20:42:46,142                    from python/meta.cpp:3:
2021-07-28T20:42:46,142   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const T&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:46,142   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,142    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:42:46,142         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:42:46,192   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:46,192                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:46,192                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:46,192                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:46,192                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:46,192                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:46,192                    from python/common.h:3,
2021-07-28T20:42:46,193                    from python/meta.cpp:3:
2021-07-28T20:42:46,193   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:46,193   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::const_iterator’ changed in GCC 7.1
2021-07-28T20:42:46,193     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:46,193         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,193   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,193     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:42:46,194         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,267   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:46,267                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:46,267                    from python/common.h:3,
2021-07-28T20:42:46,268                    from python/meta.cpp:3:
2021-07-28T20:42:46,268   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(const std::vector<gemmi::Assembly::Operator>&, pybind11::slice)>, std::vector<gemmi::Assembly::Operator>*, {const std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:46,268   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,268    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:42:46,268         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:42:46,373   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:42:46,373                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:46,373                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:46,373                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:46,374                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:46,374                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:46,374                    from python/common.h:3,
2021-07-28T20:42:46,374                    from python/meta.cpp:3:
2021-07-28T20:42:46,374   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >; _ForwardIterator = gemmi::Assembly::Operator*; bool _TrivialValueTypes = false]’:
2021-07-28T20:42:46,374   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,374      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:42:46,374         |         ^~~~~~~~~~~~~
2021-07-28T20:42:46,375   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,413   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::constructor<Args>::execute<pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > >, {char [17]}, 0>::<lambda(pybind11::detail::value_and_holder&, const std::vector<gemmi::Assembly::Operator>&)>, void, {pybind11::detail::value_and_holder&, const std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:46,414   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,414     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,414         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,414     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,414         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,414     149 |            && __assignable>::
2021-07-28T20:42:46,414         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,415     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,415         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,474   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, const std::vector<gemmi::Assembly::Operator>&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, const std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:46,474   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,474     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,475         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,475     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,475         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,475     149 |            && __assignable>::
2021-07-28T20:42:46,475         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,475     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,475         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,476   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,476     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,476         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,476     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,476         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,476     149 |            && __assignable>::
2021-07-28T20:42:46,476         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,476     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,476         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,573   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:42:46,574   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,574     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,574         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,574     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,574         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,574     149 |            && __assignable>::
2021-07-28T20:42:46,574         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,575     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,575         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,720   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static void* pybind11::detail::type_caster_base<type>::make_copy_constructor<std::vector<gemmi::Assembly::Operator>, void>::<lambda(const void*)>::_FUN(const void*)’:
2021-07-28T20:42:46,720   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,721     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,721         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,721     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,721         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,721     149 |            && __assignable>::
2021-07-28T20:42:46,721         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,721     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,721         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,767   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Assembly::Gen::Gen(const gemmi::Assembly::Gen&)’:
2021-07-28T20:42:46,767   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:46,767     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:42:46,767         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,767     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:42:46,768         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,768     149 |            && __assignable>::
2021-07-28T20:42:46,768         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:46,768     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:42:46,768         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:47,667   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:47,668                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:47,668                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:47,668                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:47,668                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:47,668                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:47,668                    from python/common.h:3,
2021-07-28T20:42:47,668                    from python/meta.cpp:3:
2021-07-28T20:42:47,669   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly&}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:42:47,669   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:42:47,669     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:42:47,669         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:47,740   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:47,740                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:47,740                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:47,740                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:47,741                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:47,741                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:47,741                    from python/common.h:3,
2021-07-28T20:42:47,741                    from python/meta.cpp:3:
2021-07-28T20:42:47,741   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, const T&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:47,741   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:47,741    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:42:47,741         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:42:47,862   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:47,862                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:47,862                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:47,862                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:47,862                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:47,863                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:47,863                    from python/common.h:3,
2021-07-28T20:42:47,863                    from python/meta.cpp:3:
2021-07-28T20:42:47,863   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:42:47,863   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::const_iterator’ changed in GCC 7.1
2021-07-28T20:42:47,863     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:42:47,863         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:47,864   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:47,864     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:42:47,864         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:48,040   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:48,040   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:48,040     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:42:48,041         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:48,041   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:48,041                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:48,041                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:48,041                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:48,041                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:48,041                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:48,042                    from python/common.h:3,
2021-07-28T20:42:48,042                    from python/meta.cpp:3:
2021-07-28T20:42:48,042   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:48,042    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:42:48,042         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:48,234   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:42:48,234                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:48,235                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:48,235                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:48,235                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:48,235                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:48,235                    from python/common.h:3,
2021-07-28T20:42:48,235                    from python/meta.cpp:3:
2021-07-28T20:42:48,235   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:48,235   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:48,236     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:42:48,236         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:48,306   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:48,306                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:48,306                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:48,306                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:48,306                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:48,306                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:48,307                    from python/common.h:3,
2021-07-28T20:42:48,307                    from python/meta.cpp:3:
2021-07-28T20:42:48,307   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(const std::vector<gemmi::Assembly>&, pybind11::slice)>, std::vector<gemmi::Assembly>*, {const std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:48,307   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:48,307    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:42:48,307         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:42:50,011   In file included from python/meta.cpp:5:
2021-07-28T20:42:50,011   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType, const T&)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,011   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::const_iterator’ changed in GCC 7.1
2021-07-28T20:42:50,011     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:42:50,011         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:42:50,132   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:50,132                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:50,132                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:50,133                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:50,133                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:50,133                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:50,133                    from python/common.h:3,
2021-07-28T20:42:50,133                    from python/meta.cpp:3:
2021-07-28T20:42:50,133   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType)>, gemmi::Assembly::Operator, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,133   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:50,133    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:50,134         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:50,180   In file included from python/meta.cpp:5:
2021-07-28T20:42:50,180   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType, const T&)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,180   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::const_iterator’ changed in GCC 7.1
2021-07-28T20:42:50,181     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:42:50,181         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:42:50,315   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:42:50,315                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:42:50,316                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:42:50,316                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:42:50,316                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:42:50,316                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:42:50,316                    from python/common.h:3,
2021-07-28T20:42:50,316                    from python/meta.cpp:3:
2021-07-28T20:42:50,316   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly::Operator>, pybind11::class_<std::vector<gemmi::Assembly::Operator>, std::unique_ptr<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >, std::default_delete<std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> > > > > >::<lambda(std::vector<gemmi::Assembly::Operator>&, DiffType)>, void, {std::vector<gemmi::Assembly::Operator, std::allocator<gemmi::Assembly::Operator> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,316   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:42:50,316    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:50,317         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:50,347   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType)>, void, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,348   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:50,348    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:50,348         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:50,462   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Assembly>, pybind11::class_<std::vector<gemmi::Assembly>, std::unique_ptr<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >, std::default_delete<std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> > > > > >::<lambda(std::vector<gemmi::Assembly>&, DiffType)>, gemmi::Assembly, {std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:42:50,462   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:42:50,463    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:42:50,463         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:42:51,599   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mol.cpp -o build/temp.linux-armv7l-3.9/python/mol.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:43:45,504   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:43:45,504                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:45,504                    from python/mol.cpp:3:
2021-07-28T20:43:45,504   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:43:45,505   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:43:45,505     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:43:45,505         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:45,544   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:43:45,544   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:43:45,711   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:43:45,711   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:43:45,711     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:45,711         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:45,743   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:43:45,743                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:45,743                    from python/mol.cpp:3:
2021-07-28T20:43:45,743   /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_child(P&, int) [with P = gemmi::Residue]’:
2021-07-28T20:43:45,743   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:45,744    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:43:45,744         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:45,812   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::remove_alternative_conformations(T&) [with T = gemmi::Chain]’:
2021-07-28T20:43:45,812   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:45,812    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:43:45,812         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:49,755   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:43:49,755                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:49,755                    from python/mol.cpp:3:
2021-07-28T20:43:49,755   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:43:49,756   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:43:49,756     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:43:49,756         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:49,756   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:43:49,837   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’:
2021-07-28T20:43:49,837   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:43:49,837     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:43:49,837         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:49,965   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Structure::setup_cell_images()’:
2021-07-28T20:43:49,965   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:43:49,965     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:43:49,965         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:49,966   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:43:49,966     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:43:49,966         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:50,130   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:43:50,130   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:43:50,131     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:50,131         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:50,131   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:43:50,171   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:43:50,172                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:50,172                    from python/mol.cpp:3:
2021-07-28T20:43:50,172   /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_children(P&, pybind11::slice) [with P = gemmi::Residue]’:
2021-07-28T20:43:50,172   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:50,172    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:43:50,172         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:50,172   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:50,173    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:43:50,173         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:50,240   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::vector_remove_if(std::vector<T>&, F&&) [with T = gemmi::Atom; F = gemmi::trim_to_alanine(gemmi::Residue&)::<lambda(const gemmi::Atom&)>]’:
2021-07-28T20:43:50,240   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:50,240    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:43:50,240         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:50,436   /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::remove_hydrogens(T&) [with T = gemmi::Structure]’:
2021-07-28T20:43:50,437   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:43:50,437    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:43:50,437         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:54,729   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:43:54,730                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:54,730                    from python/mol.cpp:3:
2021-07-28T20:43:54,730   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:43:54,730   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:43:54,730     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:43:54,730         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:54,873   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:43:54,873   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::const_iterator’ changed in GCC 7.1
2021-07-28T20:43:54,873     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:54,874         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:54,874   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:43:54,875     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:43:54,875         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:54,956   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:43:54,956   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:43:54,956     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:54,956         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:54,957   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,035   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:43:55,035   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,035     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:55,035         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,103   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::NcsOp&}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:43:55,103   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,103     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:43:55,104         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,159   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:43:55,159   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::const_iterator’ changed in GCC 7.1
2021-07-28T20:43:55,159     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:55,159         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,160   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:43:55,160     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:43:55,160         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,211   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:43:55,212   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,212     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:55,212         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,212   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,250   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:43:55,250   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:43:55,250     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:43:55,250         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:43:55,386   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:43:55,386                    from include/gemmi/model.hpp:15,
2021-07-28T20:43:55,386                    from python/mol.cpp:3:
2021-07-28T20:43:55,386   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; _ForwardIterator = gemmi::NcsOp*; bool _TrivialValueTypes = false]’:
2021-07-28T20:43:55,386   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:43:55,387      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:43:55,387         |         ^~~~~~~~~~~~~
2021-07-28T20:43:55,387   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:43:55,450   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’:
2021-07-28T20:43:55,451   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:43:55,451   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:43:56,600   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:43:56,600   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:43:56,600   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:44:02,785   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:02,786                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:02,786                    from python/mol.cpp:3:
2021-07-28T20:44:02,786   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, pybind11::slice)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:02,786   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:02,786    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:02,786         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,928   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:44:02,929                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:02,929                    from python/mol.cpp:3:
2021-07-28T20:44:02,929   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const std::vector<gemmi::NcsOp>&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:02,929   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:02,929     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:02,929         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,929     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:02,930         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,930     149 |            && __assignable>::
2021-07-28T20:44:02,930         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,930     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:02,930         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,930   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:02,930     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:02,930         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,931     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:02,931         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,931     149 |            && __assignable>::
2021-07-28T20:44:02,931         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,931     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:02,931         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:02,983   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:02,983                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:02,984                    from python/mol.cpp:3:
2021-07-28T20:44:02,984   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const T&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:02,984   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:02,984    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:44:02,984         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:44:03,025   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, pybind11::slice)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:03,025   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:03,026    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:03,026         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,183   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:44:03,183                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:03,183                    from python/mol.cpp:3:
2021-07-28T20:44:03,183   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, const std::vector<gemmi::Connection>&)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, const std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:03,183   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:03,184     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:03,184         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,184     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:03,184         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,184     149 |            && __assignable>::
2021-07-28T20:44:03,184         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,184     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:03,184         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,185   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:03,185     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:03,185         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,185     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:03,185         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,185     149 |            && __assignable>::
2021-07-28T20:44:03,185         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,185     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:03,185         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:03,235   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:03,235                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:03,235                    from python/mol.cpp:3:
2021-07-28T20:44:03,236   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, const T&)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:03,236   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:03,236    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:44:03,236         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:44:04,586   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:44:04,586                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:04,586                    from python/mol.cpp:3:
2021-07-28T20:44:04,587   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Structure, std::vector<gemmi::Connection>, {}>::<lambda(pybind11::class_<gemmi::Structure>::type&, const std::vector<gemmi::Connection>&)>, void, {gemmi::Structure&, const std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:04,587   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:04,587     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:04,587         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,587     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:04,587         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,587     149 |            && __assignable>::
2021-07-28T20:44:04,587         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,588     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:04,588         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,807   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Structure, std::vector<gemmi::NcsOp>, {}>::<lambda(pybind11::class_<gemmi::Structure>::type&, const std::vector<gemmi::NcsOp>&)>, void, {gemmi::Structure&, const std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:04,807   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:04,807     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:04,807         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,807     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:04,807         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,808     149 |            && __assignable>::
2021-07-28T20:44:04,808         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:04,808     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:04,808         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:06,441   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:06,442                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:06,442                    from python/mol.cpp:3:
2021-07-28T20:44:06,442   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(const std::vector<gemmi::Connection>&, pybind11::slice)>, std::vector<gemmi::Connection>*, {const std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:06,442   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:06,442    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:44:06,442         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:44:06,559   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(const std::vector<gemmi::NcsOp>&, pybind11::slice)>, std::vector<gemmi::NcsOp>*, {const std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:06,559   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:06,560    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:44:06,560         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:44:15,311   In file included from python/common.h:3,
2021-07-28T20:44:15,311                    from python/mol.cpp:9:
2021-07-28T20:44:15,311   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >; ValueType = gemmi::NcsOp&; Extra = {}]’:
2021-07-28T20:44:15,311   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:15,311    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:44:15,312         |          ^~~~~~~~~~~~~
2021-07-28T20:44:15,312   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:15,367   In file included from python/mol.cpp:11:
2021-07-28T20:44:15,367   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&)>, pybind11::iterator, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:15,367   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:15,367     318 |                    v.begin(), v.end());
2021-07-28T20:44:15,367         |                                      ^
2021-07-28T20:44:15,395   In file included from python/common.h:3,
2021-07-28T20:44:15,396                    from python/mol.cpp:9:
2021-07-28T20:44:15,396   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >; ValueType = gemmi::Connection&; Extra = {}]’:
2021-07-28T20:44:15,396   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:15,396    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:44:15,396         |          ^~~~~~~~~~~~~
2021-07-28T20:44:15,396   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:15,451   In file included from python/mol.cpp:11:
2021-07-28T20:44:15,452   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&)>, pybind11::iterator, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:15,452   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:15,452     318 |                    v.begin(), v.end());
2021-07-28T20:44:15,452         |                                      ^
2021-07-28T20:44:15,513   In file included from python/common.h:3,
2021-07-28T20:44:15,514                    from python/mol.cpp:9:
2021-07-28T20:44:15,514   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >; Sentinel = __gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >; ValueType = const gemmi::Atom&; Extra = {}]’:
2021-07-28T20:44:15,514   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:15,514    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:44:15,514         |          ^~~~~~~~~~~~~
2021-07-28T20:44:15,514   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:15,515   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:15,569   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(const gemmi::Residue&)>, pybind11::iterator, {const gemmi::Residue&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:15,570   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:15,570    1986 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-07-28T20:44:15,570         |                                                                              ^
2021-07-28T20:44:16,142   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >; Sentinel = gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’:
2021-07-28T20:44:16,142   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:16,142    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:44:16,143         |          ^~~~~~~~~~~~~
2021-07-28T20:44:16,143   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:16,201   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(gemmi::UniqProxy<gemmi::Atom>&)>, pybind11::iterator, {gemmi::UniqProxy<gemmi::Atom, std::vector<gemmi::Atom, std::allocator<gemmi::Atom> > >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:16,201   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:16,202    1986 |     return make_iterator<Policy>(std::begin(value), std::end(value), extra...);
2021-07-28T20:44:16,202         |                                                                              ^
2021-07-28T20:44:16,202   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:16,202   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator<gemmi::UniqIterPolicy<std::vector<gemmi::Atom>, gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:24,713   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:44:24,713                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:24,713                    from python/mol.cpp:3:
2021-07-28T20:44:24,713   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:44:24,714   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:44:24,714     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:44:24,714         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:24,986   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, const pybind11::iterable&)>’:
2021-07-28T20:44:24,986   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:24,986     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:44:24,987         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:24,987   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:24,987                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:24,987                    from python/mol.cpp:3:
2021-07-28T20:44:24,988   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:24,988    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:44:24,988         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:25,286   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:44:25,286                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:25,286                    from python/mol.cpp:3:
2021-07-28T20:44:25,286   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(const pybind11::iterable&)>’:
2021-07-28T20:44:25,286   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:25,287     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:44:25,287         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:25,422   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:44:25,423   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:44:25,423     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:44:25,423         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:25,484   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::factory<Func, pybind11::detail::void_type (*)(), Return(Args ...)>::execute<pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > >, {}>::<lambda(pybind11::detail::value_and_holder&, const pybind11::iterable&)>, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:25,484   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:25,484     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:44:25,484         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:25,589   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, const pybind11::iterable&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:25,589   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:25,590     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:44:25,590         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:25,590   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:25,590                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:25,590                    from python/mol.cpp:3:
2021-07-28T20:44:25,590   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:25,590    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:44:25,591         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:27,099   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:44:27,099                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:27,099                    from python/mol.cpp:3:
2021-07-28T20:44:27,099   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:44:27,099   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:44:27,099     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:44:27,100         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:27,189   /usr/include/c++/10/bits/vector.tcc: In function ‘C& add_child(P&, C, int) [with P = gemmi::Residue; C = gemmi::Atom]’:
2021-07-28T20:44:27,189   /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:27,190     356 |  _M_realloc_insert(begin() + __n, std::move(__v));
2021-07-28T20:44:27,190         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:27,422   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:27,423                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:27,423                    from python/mol.cpp:3:
2021-07-28T20:44:27,423   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType)>, gemmi::NcsOp, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:27,423   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:27,423    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:27,423         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:27,468   In file included from python/mol.cpp:11:
2021-07-28T20:44:27,468   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType, const T&)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:27,468   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::const_iterator’ changed in GCC 7.1
2021-07-28T20:44:27,469     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:44:27,469         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:44:27,546   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType, const T&)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:27,546   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::const_iterator’ changed in GCC 7.1
2021-07-28T20:44:27,546     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:44:27,547         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:44:28,427   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:44:28,427                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:28,428                    from python/mol.cpp:3:
2021-07-28T20:44:28,428   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType)>, void, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:28,428   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:28,428    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:28,428         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:28,459   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::NcsOp>, pybind11::class_<std::vector<gemmi::NcsOp>, std::unique_ptr<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >, std::default_delete<std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> > > > > >::<lambda(std::vector<gemmi::NcsOp>&, DiffType)>, void, {std::vector<gemmi::NcsOp, std::allocator<gemmi::NcsOp> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:28,459   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:44:28,459    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:28,459         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:28,562   /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Connection>, pybind11::class_<std::vector<gemmi::Connection>, std::unique_ptr<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >, std::default_delete<std::vector<gemmi::Connection, std::allocator<gemmi::Connection> > > > > >::<lambda(std::vector<gemmi::Connection>&, DiffType)>, gemmi::Connection, {std::vector<gemmi::Connection, std::allocator<gemmi::Connection> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>’:
2021-07-28T20:44:28,562   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:44:28,563    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:28,563         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,195   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_mol(pybind11::module&)::<lambda(gemmi::Residue&, const string&, char)>, void, {gemmi::Residue&, const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, char}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:29,196   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:44:29,196    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:44:29,196         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,671   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:44:29,671                    from include/gemmi/model.hpp:15,
2021-07-28T20:44:29,671                    from python/mol.cpp:3:
2021-07-28T20:44:29,671   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-07-28T20:44:29,671   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:44:29,672      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:44:29,672         |         ^~~~~~~~~~~~~
2021-07-28T20:44:29,672   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:44:29,731   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static void* pybind11::detail::type_caster_base<type>::make_copy_constructor<std::vector<gemmi::Assembly>, void>::<lambda(const void*)>::_FUN(const void*)’:
2021-07-28T20:44:29,731   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:44:29,731     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:29,731         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,731     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:29,732         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,732     149 |            && __assignable>::
2021-07-28T20:44:29,732         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,732     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:29,732         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,781   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-07-28T20:44:29,781   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:44:29,781      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:44:29,781         |         ^~~~~~~~~~~~~
2021-07-28T20:44:29,781   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:44:29,903   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:44:29,903   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:44:29,911   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:44:29,911   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:44:29,911     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:29,911         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,911     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:29,912         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,912     149 |            && __assignable>::
2021-07-28T20:44:29,912         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:29,912     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:29,912         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,531   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Structure, std::vector<gemmi::Assembly>, {}>::<lambda(pybind11::class_<gemmi::Structure>::type&, const std::vector<gemmi::Assembly>&)>, void, {gemmi::Structure&, const std::vector<gemmi::Assembly, std::allocator<gemmi::Assembly> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:44:30,531   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:44:30,531     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:30,531         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,531     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:30,532         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,532     149 |            && __assignable>::
2021-07-28T20:44:30,532         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,532     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:30,532         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,700   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:44:30,700   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:44:30,700      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:44:30,700         |         ^~~~~~~~~~~~~
2021-07-28T20:44:30,700   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:44:30,800   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-07-28T20:44:30,800   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:44:30,800     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:30,800         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,801     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:30,801         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,801     149 |            && __assignable>::
2021-07-28T20:44:30,801         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,801     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:30,801         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,801   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:44:30,802     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:30,802         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,802     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:30,802         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,802     149 |            && __assignable>::
2021-07-28T20:44:30,802         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,802     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:30,802         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,802   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:44:30,803     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:30,803         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,803     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:30,803         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,803     149 |            && __assignable>::
2021-07-28T20:44:30,803         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,803     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:30,803         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,931   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-07-28T20:44:30,931   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:44:30,931     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:44:30,931         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,931     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:44:30,932         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,932     149 |            && __assignable>::
2021-07-28T20:44:30,932         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:30,932     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:44:30,932         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:44:32,256   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/monlib.cpp -o build/temp.linux-armv7l-3.9/python/monlib.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:45:13,016   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:45:13,016                    from /usr/include/c++/10/string:40,
2021-07-28T20:45:13,017                    from include/gemmi/chemcomp.hpp:9,
2021-07-28T20:45:13,017                    from python/monlib.cpp:3:
2021-07-28T20:45:13,017   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::get_plane(const string&)::<lambda(const gemmi::Restraints::Plane&)> >]’:
2021-07-28T20:45:13,017   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:13,017    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-07-28T20:45:13,017         |     ^~~~~~~~~
2021-07-28T20:45:13,017   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:14,720   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Restraints::find_bond<std::__cxx11::basic_string<char> >::<lambda(const gemmi::Restraints::Bond&)> >]’:
2021-07-28T20:45:14,720   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:14,721   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:18,330   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:45:18,330                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:18,330                    from python/monlib.cpp:3:
2021-07-28T20:45:18,330   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:18,330   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-07-28T20:45:18,330     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:45:18,331         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:21,868   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-07-28T20:45:21,868   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Plane>::iterator’ changed in GCC 7.1
2021-07-28T20:45:21,868     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:21,868         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:21,913   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-07-28T20:45:21,913   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:21,913     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:45:21,913         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:21,959   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:21,959   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-07-28T20:45:21,959     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:45:21,959         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:21,959   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-07-28T20:45:22,021   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-07-28T20:45:22,021   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-07-28T20:45:22,021   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-07-28T20:45:23,832   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-07-28T20:45:23,833   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-07-28T20:45:23,833   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-07-28T20:45:24,247   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:24,247                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:24,247                    from python/monlib.cpp:3:
2021-07-28T20:45:24,247   /usr/include/c++/10/bits/stl_vector.h: In member function ‘gemmi::ChemComp& gemmi::ChemComp::remove_hydrogens()’:
2021-07-28T20:45:24,248   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:24,248    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:24,248         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,251   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-07-28T20:45:24,251    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:24,252         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,252   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-07-28T20:45:24,252    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:24,252         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,631   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:45:24,631                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:24,632                    from python/monlib.cpp:3:
2021-07-28T20:45:24,632   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:24,632   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-07-28T20:45:24,632     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:24,632         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,692   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:24,692   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:24,692     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:45:24,692         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,756   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-07-28T20:45:24,756   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-07-28T20:45:24,756     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:24,756         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,827   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-07-28T20:45:24,827   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-07-28T20:45:24,827     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:45:24,828         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:24,927   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-07-28T20:45:24,927   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-07-28T20:45:24,927     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:24,927         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:25,028   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-07-28T20:45:25,028   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-07-28T20:45:25,028     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:45:25,029         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:25,493   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator<gemmi::Restraints::Angle>]’:
2021-07-28T20:45:25,493   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Angle>::iterator’ changed in GCC 7.1
2021-07-28T20:45:25,493     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:25,493         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:27,502   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:45:27,503                    from /usr/include/c++/10/string:40,
2021-07-28T20:45:27,503                    from include/gemmi/chemcomp.hpp:9,
2021-07-28T20:45:27,503                    from python/monlib.cpp:3:
2021-07-28T20:45:27,503   /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::ChemComp gemmi::make_chemcomp_from_block(const gemmi::cif::Block&)’:
2021-07-28T20:45:27,503   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:27,503    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:27,503         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:27,504    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:27,504         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:28,134   /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::Restraints gemmi::read_link_restraints(const gemmi::cif::Block&)’:
2021-07-28T20:45:28,134   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:28,134    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:28,134         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:28,135    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:28,135         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:28,554   /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::Restraints gemmi::read_restraint_modifications(const gemmi::cif::Block&)’:
2021-07-28T20:45:28,555   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:28,555    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:28,555         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:28,555    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:28,555         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:29,058   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:45:29,058                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:29,058                    from python/monlib.cpp:3:
2021-07-28T20:45:29,058   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:29,058   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::iterator’ changed in GCC 7.1
2021-07-28T20:45:29,058     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:29,058         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:29,154   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:29,154   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::const_iterator’ changed in GCC 7.1
2021-07-28T20:45:29,154     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:45:29,154         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:29,156   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:29,156     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:45:29,156         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:29,450   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator<gemmi::Restraints::Torsion>]’:
2021-07-28T20:45:29,450   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Torsion>::iterator’ changed in GCC 7.1
2021-07-28T20:45:29,451     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:45:29,451         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,085   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:30,085                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:30,085                    from python/monlib.cpp:3:
2021-07-28T20:45:30,085   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::ChemMod::apply_to(gemmi::ChemComp&) const’:
2021-07-28T20:45:30,085   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:30,086    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:30,086         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,086   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-07-28T20:45:30,087    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:30,087         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,088   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-07-28T20:45:30,089    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:30,089         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,091   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:45:30,091                    from /usr/include/c++/10/string:40,
2021-07-28T20:45:30,091                    from include/gemmi/chemcomp.hpp:9,
2021-07-28T20:45:30,092                    from python/monlib.cpp:3:
2021-07-28T20:45:30,092   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:30,092    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:30,092         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,092    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:30,092         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,092   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:30,092                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:30,093                    from python/monlib.cpp:3:
2021-07-28T20:45:30,093   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:30,093    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:30,093         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:30,093   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:30,093    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:45:30,093         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,094   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Angle*, std::vector<gemmi::Restraints::Angle> >’ changed in GCC 7.1
2021-07-28T20:45:30,094    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:30,095         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:30,096   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Torsion*, std::vector<gemmi::Restraints::Torsion> >’ changed in GCC 7.1
2021-07-28T20:45:30,096    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:30,096         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:30,100   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:45:30,101                    from /usr/include/c++/10/string:40,
2021-07-28T20:45:30,101                    from include/gemmi/chemcomp.hpp:9,
2021-07-28T20:45:30,101                    from python/monlib.cpp:3:
2021-07-28T20:45:30,101   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:30,101    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:30,101         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,101    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:30,102         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,102   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:30,102    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:30,102         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:30,102    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:30,102         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:31,748   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:45:31,748                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:31,748                    from python/monlib.cpp:3:
2021-07-28T20:45:31,748   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; _ForwardIterator = gemmi::Restraints::Bond*; bool _TrivialValueTypes = false]’:
2021-07-28T20:45:31,748   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:31,748      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:45:31,749         |         ^~~~~~~~~~~~~
2021-07-28T20:45:31,749   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:31,824   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator<gemmi::Restraints::Bond>]’:
2021-07-28T20:45:31,824   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:31,824     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:45:31,825         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:31,825     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:45:31,825         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:31,825     149 |            && __assignable>::
2021-07-28T20:45:31,825         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:31,825     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:45:31,825         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:31,903   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’:
2021-07-28T20:45:31,904   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:31,904      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:45:31,904         |         ^~~~~~~~~~~~~
2021-07-28T20:45:31,904   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:32,010   /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator<gemmi::Restraints::Plane>]’:
2021-07-28T20:45:32,010   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:32,010     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:45:32,011         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:32,011     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:45:32,011         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:32,011     149 |            && __assignable>::
2021-07-28T20:45:32,011         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:32,011     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:45:32,011         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,597   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:37,597                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:37,598                    from python/monlib.cpp:3:
2021-07-28T20:45:37,598   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, pybind11::slice)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:37,598   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:37,598    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:45:37,598         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,753   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:45:37,753                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:37,753                    from python/monlib.cpp:3:
2021-07-28T20:45:37,753   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const std::vector<gemmi::Restraints::Bond>&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:37,754   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:37,754     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:45:37,754         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,754     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:45:37,754         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,754     149 |            && __assignable>::
2021-07-28T20:45:37,754         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,754     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:45:37,755         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,755   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:37,755     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:45:37,755         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,755     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:45:37,755         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,755     149 |            && __assignable>::
2021-07-28T20:45:37,755         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,756     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:45:37,756         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:37,816   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:37,816                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:37,817                    from python/monlib.cpp:3:
2021-07-28T20:45:37,817   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const T&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:37,817   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:37,817    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:37,817         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:38,799   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:45:38,799                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:38,799                    from python/monlib.cpp:3:
2021-07-28T20:45:38,799   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, const pybind11::iterable&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:38,800   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:38,800     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:45:38,800         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:38,800   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:38,800                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:38,800                    from python/monlib.cpp:3:
2021-07-28T20:45:38,800   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:38,800    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:45:38,801         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:40,473   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:45:40,473                    from /usr/include/c++/10/string:40,
2021-07-28T20:45:40,474                    from include/gemmi/chemcomp.hpp:9,
2021-07-28T20:45:40,474                    from python/monlib.cpp:3:
2021-07-28T20:45:40,474   /usr/include/c++/10/bits/stl_algobase.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_monlib(pybind11::module&)::<lambda(gemmi::Restraints&, const string&, const string&)>, gemmi::Restraints::Bond&, {gemmi::Restraints&, const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::return_value_policy}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:40,474   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:40,474    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:45:40,474         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:40,474    1975 |          std::__iterator_category(__first));
2021-07-28T20:45:40,474         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:40,536   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:40,536                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:40,537                    from python/monlib.cpp:3:
2021-07-28T20:45:40,537   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(const std::vector<gemmi::Restraints::Bond>&, pybind11::slice)>, std::vector<gemmi::Restraints::Bond>*, {const std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:40,537   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:40,537    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:40,537         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:45,418   In file included from python/common.h:3,
2021-07-28T20:45:45,418                    from python/monlib.cpp:9:
2021-07-28T20:45:45,419   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >; ValueType = gemmi::Restraints::Bond&; Extra = {}]’:
2021-07-28T20:45:45,419   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:45,419    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:45:45,419         |          ^~~~~~~~~~~~~
2021-07-28T20:45:45,419   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:45,499   In file included from python/monlib.cpp:11:
2021-07-28T20:45:45,499   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&)>, pybind11::iterator, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:45,499   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:45,499     318 |                    v.begin(), v.end());
2021-07-28T20:45:45,499         |                                      ^
2021-07-28T20:45:54,781   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:45:54,781                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:54,781                    from python/monlib.cpp:3:
2021-07-28T20:45:54,781   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’:
2021-07-28T20:45:54,781   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:45:54,781     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:45:54,782         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:54,782     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:45:54,782         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:54,782     149 |            && __assignable>::
2021-07-28T20:45:54,782         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:54,782     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:45:54,782         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:55,367   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:55,368                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:55,368                    from python/monlib.cpp:3:
2021-07-28T20:45:55,368   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Topo::initialize_refmac_topology(const gemmi::Structure&, gemmi::Model&, gemmi::MonLib&)’:
2021-07-28T20:45:55,368   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:55,368    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:45:55,368         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:45:56,742   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType)>, gemmi::Restraints::Bond, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:56,742   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:56,742    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:45:56,742         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:45:56,787   In file included from python/monlib.cpp:11:
2021-07-28T20:45:56,788   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType, const T&)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:56,788   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Restraints::Bond>::const_iterator’ changed in GCC 7.1
2021-07-28T20:45:56,788     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:45:56,788         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:45:57,172   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:45:57,172                    from include/gemmi/chemcomp.hpp:10,
2021-07-28T20:45:57,172                    from python/monlib.cpp:3:
2021-07-28T20:45:57,172   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Restraints::Bond>, pybind11::class_<std::vector<gemmi::Restraints::Bond>, std::unique_ptr<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >, std::default_delete<std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> > > > > >::<lambda(std::vector<gemmi::Restraints::Bond>&, DiffType)>, void, {std::vector<gemmi::Restraints::Bond, std::allocator<gemmi::Restraints::Bond> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:45:57,173   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Restraints::Bond*, std::vector<gemmi::Restraints::Bond> >’ changed in GCC 7.1
2021-07-28T20:45:57,173    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:45:57,173         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:00,583   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mtz.cpp -o build/temp.linux-armv7l-3.9/python/mtz.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:46:42,459   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:46:42,459                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:42,459                    from python/mtz.cpp:3:
2021-07-28T20:46:42,459   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:42,459   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:42,460     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:46:42,460         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:42,460   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:42,536   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:42,536   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:42,536     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:42,536         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:42,563   /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::Mtz::Dataset& gemmi::Mtz::add_dataset(const string&)’:
2021-07-28T20:46:42,563   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:42,563     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:42,563         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:42,615   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:46:42,616   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:46:42,616     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:46:42,616         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:42,696   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’:
2021-07-28T20:46:42,697   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:46:42,697     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:42,697         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:44,213   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Mtz::Dataset&}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:44,213   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:44,213     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:46:44,213         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:44,213   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:44,356   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:44,356   /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::const_iterator’ changed in GCC 7.1
2021-07-28T20:46:44,356     130 |     vector<_Tp, _Alloc>::
2021-07-28T20:46:44,356         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:44,358   /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:44,358     161 |  _M_realloc_insert(begin() + (__position - cbegin()), __x);
2021-07-28T20:46:44,358         |  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:44,486   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:44,487   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:44,487     184 |     vector<_Tp, _Alloc>::
2021-07-28T20:46:44,487         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:44,487   /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:44,594   /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:44,594   /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:44,594     171 |     vector<_Tp, _Alloc>::
2021-07-28T20:46:44,594         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:45,316   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:45,317   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::iterator’ changed in GCC 7.1
2021-07-28T20:46:45,317     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:46:45,317         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:45,407   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator<gemmi::Mtz::Dataset>]’:
2021-07-28T20:46:45,408   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:45,408     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:45,408         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:51,634   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:46:51,635                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:51,635                    from python/mtz.cpp:3:
2021-07-28T20:46:51,635   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, pybind11::slice)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:46:51,635   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:51,635    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:46:51,635         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:51,770   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const T&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:46:51,770   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:51,770    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:46:51,770         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:46:52,252   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:46:52,252                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:52,252                    from python/mtz.cpp:3:
2021-07-28T20:46:52,252   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const pybind11::iterable&)>’:
2021-07-28T20:46:52,252   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:52,252     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:52,253         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:52,254   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:46:52,254                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:52,254                    from python/mtz.cpp:3:
2021-07-28T20:46:52,254   /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:52,254    1461 |  return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
2021-07-28T20:46:52,254         |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:52,464   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:46:52,465                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:52,465                    from python/mtz.cpp:3:
2021-07-28T20:46:52,465   /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(const pybind11::iterable&)>’:
2021-07-28T20:46:52,465   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:52,465     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:46:52,465         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:46:54,341   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:46:54,342                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:46:54,342                    from python/mtz.cpp:3:
2021-07-28T20:46:54,342   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(const std::vector<gemmi::Mtz::Dataset>&, pybind11::slice)>, std::vector<gemmi::Mtz::Dataset>*, {const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:46:54,342   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:54,342    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:46:54,342         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:46:57,974   In file included from python/common.h:3,
2021-07-28T20:46:57,974                    from python/mtz.cpp:8:
2021-07-28T20:46:57,974   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; Sentinel = __gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; ValueType = gemmi::Mtz::Dataset&; Extra = {}]’:
2021-07-28T20:46:57,974   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:57,975    1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) {
2021-07-28T20:46:57,975         |          ^~~~~~~~~~~~~
2021-07-28T20:46:57,975   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:58,056   In file included from python/mtz.cpp:10:
2021-07-28T20:46:58,056   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_accessor<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&)>, pybind11::iterator, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:46:58,057   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:46:58,057     318 |                    v.begin(), v.end());
2021-07-28T20:46:58,057         |                                      ^
2021-07-28T20:47:06,004   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType, const T&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:47:06,004   /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector<gemmi::Mtz::Dataset>::const_iterator’ changed in GCC 7.1
2021-07-28T20:47:06,004     184 |             v.insert(v.begin() + i, x);
2021-07-28T20:47:06,004         |             ~~~~~~~~^~~~~~~~~~~~~~~~~~
2021-07-28T20:47:06,494   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:47:06,495                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:47:06,495                    from python/mtz.cpp:3:
2021-07-28T20:47:06,495   /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:47:06,495   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:06,495    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:47:06,495         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:06,638   /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, DiffType)>, gemmi::Mtz::Dataset, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::<lambda(pybind11::detail::function_call&)>’:
2021-07-28T20:47:06,639   /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:06,639    1431 |       { return _M_erase(begin() + (__position - cbegin())); }
2021-07-28T20:47:06,639         |                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,288   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:47:08,289                    from include/gemmi/mtz.hpp:16,
2021-07-28T20:47:08,289                    from python/mtz.cpp:3:
2021-07-28T20:47:08,289   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >; _ForwardIterator = gemmi::Mtz::Dataset*; bool _TrivialValueTypes = false]’:
2021-07-28T20:47:08,289   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,289      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:47:08,289         |         ^~~~~~~~~~~~~
2021-07-28T20:47:08,290   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,366   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::initimpl::constructor<Args>::execute<pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > >, {char [17]}, 0>::<lambda(pybind11::detail::value_and_holder&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {pybind11::detail::value_and_holder&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:47:08,367   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,367     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:47:08,367         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,367     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:47:08,367         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,367     149 |            && __assignable>::
2021-07-28T20:47:08,367         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,367     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:47:08,367         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,427   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::detail::vector_modifiers<std::vector<gemmi::Mtz::Dataset>, pybind11::class_<std::vector<gemmi::Mtz::Dataset>, std::unique_ptr<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >, std::default_delete<std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> > > > > >::<lambda(std::vector<gemmi::Mtz::Dataset>&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:47:08,427   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,427     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:47:08,427         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,427     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:47:08,427         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,428     149 |            && __assignable>::
2021-07-28T20:47:08,428         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,428     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:47:08,428         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,429   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,429     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:47:08,429         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,429     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:47:08,429         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,429     149 |            && __assignable>::
2021-07-28T20:47:08,429         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,430     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:47:08,430         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,535   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<pybind11::class_<type_, options>::def_readwrite<gemmi::Mtz, std::vector<gemmi::Mtz::Dataset>, {}>::<lambda(pybind11::class_<gemmi::Mtz>::type&, const std::vector<gemmi::Mtz::Dataset>&)>, void, {gemmi::Mtz&, const std::vector<gemmi::Mtz::Dataset, std::allocator<gemmi::Mtz::Dataset> >&}, {pybind11::is_method}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:47:08,535   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Mtz::Dataset*, std::vector<gemmi::Mtz::Dataset> >’ changed in GCC 7.1
2021-07-28T20:47:08,536     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:47:08,536         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,536     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:47:08,536         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,536     149 |            && __assignable>::
2021-07-28T20:47:08,536         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:08,536     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:47:08,536         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:17,959   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/read.cpp -o build/temp.linux-armv7l-3.9/python/read.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:47:49,992   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:47:49,992                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/rule_info.hpp:8,
2021-07-28T20:47:49,992                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:14,
2021-07-28T20:47:49,992                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:47:49,992                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:47:49,992                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:47:49,993                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:47:49,993                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:47:49,993                    from include/gemmi/numb.hpp:13,
2021-07-28T20:47:49,993                    from python/read.cpp:3:
2021-07-28T20:47:49,993   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:47:49,993   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:47:49,993     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:49,993         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:50,032   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:47:50,032   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:47:50,834   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:47:50,835   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:47:50,889   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:47:50,889   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:47:50,889     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:50,889         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,104   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
2021-07-28T20:47:51,104   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:51,104     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:51,105         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,255   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator<gemmi::RefinementInfo>]’:
2021-07-28T20:47:51,255   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:47:51,255     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:51,255         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,307   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
2021-07-28T20:47:51,308   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ExperimentInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:51,308     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:51,308         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,372   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator<gemmi::ExperimentInfo>]’:
2021-07-28T20:47:51,372   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:47:51,372     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:51,372         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,439   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-07-28T20:47:51,439   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::CrystalInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:51,439     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:51,439         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,505   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator<gemmi::CrystalInfo>]’:
2021-07-28T20:47:51,505   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:47:51,505     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:51,505         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,674   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
2021-07-28T20:47:51,674   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::DiffractionInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:51,674     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:51,675         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:51,872   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator<gemmi::DiffractionInfo>]’:
2021-07-28T20:47:51,872   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::DiffractionInfo*, std::vector<gemmi::DiffractionInfo> >’ changed in GCC 7.1
2021-07-28T20:47:51,873     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:51,873         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,296   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:47:52,297   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Atom>::iterator’ changed in GCC 7.1
2021-07-28T20:47:52,297     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:52,297         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,371   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator<gemmi::Atom>]’:
2021-07-28T20:47:52,371   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Atom*, std::vector<gemmi::Atom> >’ changed in GCC 7.1
2021-07-28T20:47:52,372     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:52,372         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,578   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator<gemmi::SmallStructure::AtomType>]’:
2021-07-28T20:47:52,578   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::AtomType>::iterator’ changed in GCC 7.1
2021-07-28T20:47:52,578     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:52,579         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,656   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
2021-07-28T20:47:52,656   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::TlsGroup>::iterator’ changed in GCC 7.1
2021-07-28T20:47:52,712   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator<gemmi::TlsGroup>]’:
2021-07-28T20:47:52,712   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:47:52,713     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:52,713         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,828   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator<gemmi::BasicRefinementInfo>]’:
2021-07-28T20:47:52,828   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::BasicRefinementInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:52,828     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:52,829         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:52,875   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator<gemmi::ReflectionsInfo>]’:
2021-07-28T20:47:52,875   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::ReflectionsInfo>::iterator’ changed in GCC 7.1
2021-07-28T20:47:53,002   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’:
2021-07-28T20:47:53,002   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::ReflectionsInfo*, std::vector<gemmi::ReflectionsInfo> >’ changed in GCC 7.1
2021-07-28T20:47:53,002     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:53,002         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:54,717   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:47:54,717   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:47:54,717     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:54,717         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:54,717   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:47:54,798   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’:
2021-07-28T20:47:54,798   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:47:54,798     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:54,798         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:54,925   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Structure::setup_cell_images()’:
2021-07-28T20:47:54,926   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:47:54,926     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:54,926         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:54,926   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:47:54,926     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:54,926         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:55,412   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:47:55,412   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Connection>::iterator’ changed in GCC 7.1
2021-07-28T20:47:55,412     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:55,412         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:55,577   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator<gemmi::Connection>]’:
2021-07-28T20:47:55,578   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:47:55,578     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:55,578         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:55,965   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:47:55,965   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly>::iterator’ changed in GCC 7.1
2021-07-28T20:47:55,965     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:55,965         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:56,036   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >}; _Tp = gemmi::Assembly; _Alloc = std::allocator<gemmi::Assembly>]’:
2021-07-28T20:47:56,036   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:47:56,037     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:56,037         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:56,162   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:47:56,162   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::NcsOp>::iterator’ changed in GCC 7.1
2021-07-28T20:47:56,163     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:47:56,163         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:56,197   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator<gemmi::NcsOp>]’:
2021-07-28T20:47:56,197   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::NcsOp*, std::vector<gemmi::NcsOp> >’ changed in GCC 7.1
2021-07-28T20:47:56,198     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:56,198         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:47:57,676   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::read_connectivity(gemmi::cif::Block&, gemmi::Structure&)’:
2021-07-28T20:47:57,676   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Connection*, std::vector<gemmi::Connection> >’ changed in GCC 7.1
2021-07-28T20:47:57,676     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:47:57,676         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:05,494   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator<gemmi::Assembly::Operator>]’:
2021-07-28T20:48:05,494   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Assembly::Operator>::iterator’ changed in GCC 7.1
2021-07-28T20:48:05,494     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:48:05,494         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:05,698   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:48:05,698                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/rule_info.hpp:8,
2021-07-28T20:48:05,698                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:14,
2021-07-28T20:48:05,698                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:05,698                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:05,698                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:05,699                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:05,699                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:05,699                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:05,699                    from python/read.cpp:3:
2021-07-28T20:48:05,699   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<gemmi::Assembly> gemmi::impl::read_assemblies(gemmi::cif::Block&)’:
2021-07-28T20:48:05,699   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Assembly::Operator*, std::vector<gemmi::Assembly::Operator> >’ changed in GCC 7.1
2021-07-28T20:48:05,699    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:48:05,700         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:48:06,461   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/rule_info.hpp:8,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:14,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:06,462                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:06,463                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:06,463                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:06,463                    from python/read.cpp:3:
2021-07-28T20:48:06,463   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator<gemmi::SmallStructure::Site>]’:
2021-07-28T20:48:06,463   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::SmallStructure::Site>::iterator’ changed in GCC 7.1
2021-07-28T20:48:06,463     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:48:06,463         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:06,727   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:48:06,727                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/rule_info.hpp:8,
2021-07-28T20:48:06,727                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:14,
2021-07-28T20:48:06,728                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:06,728                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:06,728                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:06,728                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:06,728                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:06,728                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:06,728                    from python/read.cpp:3:
2021-07-28T20:48:06,728   /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’:
2021-07-28T20:48:06,729   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::Site*, std::vector<gemmi::SmallStructure::Site> >’ changed in GCC 7.1
2021-07-28T20:48:06,729    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:48:06,729         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:48:06,732   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::SmallStructure::AtomType*, std::vector<gemmi::SmallStructure::AtomType> >’ changed in GCC 7.1
2021-07-28T20:48:06,732    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:48:06,732         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:48:08,406   In file included from /usr/include/c++/10/memory:66,
2021-07-28T20:48:08,406                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/../internal/demangle_cxxabi.hpp:9,
2021-07-28T20:48:08,406                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/../internal/demangle.hpp:13,
2021-07-28T20:48:08,406                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:12,
2021-07-28T20:48:08,406                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:08,406                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:08,407                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:08,407                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:08,407                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:08,407                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:08,407                    from python/read.cpp:3:
2021-07-28T20:48:08,407   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:48:08,407   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:48:08,407      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:48:08,408         |         ^~~~~~~~~~~~~
2021-07-28T20:48:08,408   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:48:11,141   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/rule_info.hpp:8,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:14,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:11,142                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:11,143                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:11,143                    from python/read.cpp:3:
2021-07-28T20:48:11,143   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
2021-07-28T20:48:11,143   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
2021-07-28T20:48:11,143     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:48:11,143         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:11,215   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)’:
2021-07-28T20:48:11,215   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
2021-07-28T20:48:11,215     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:48:11,215         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:11,277   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator<gemmi::RefinementInfo::Restr>]’:
2021-07-28T20:48:11,278   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::RefinementInfo::Restr>::iterator’ changed in GCC 7.1
2021-07-28T20:48:11,278     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:48:11,278         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:11,356   /usr/include/c++/10/bits/vector.tcc: In function ‘T& gemmi::impl::find_or_add(std::vector<Value>&, const string&) [with T = gemmi::RefinementInfo::Restr]’:
2021-07-28T20:48:11,357   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::RefinementInfo::Restr*, std::vector<gemmi::RefinementInfo::Restr> >’ changed in GCC 7.1
2021-07-28T20:48:11,357     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:48:11,357         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:11,497   /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’:
2021-07-28T20:48:11,497   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::BasicRefinementInfo*, std::vector<gemmi::BasicRefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:48:11,497     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:48:11,497         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,536   In file included from /usr/include/c++/10/memory:66,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/../internal/demangle_cxxabi.hpp:9,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/../internal/demangle.hpp:13,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/grammar_info.hpp:12,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/internal/../analysis/generic.hpp:9,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/internal/eol.hpp:11,
2021-07-28T20:48:16,536                    from include/gemmi/third_party/tao/pegtl/eol.hpp:9,
2021-07-28T20:48:16,537                    from include/gemmi/third_party/tao/pegtl/ascii.hpp:8,
2021-07-28T20:48:16,537                    from include/gemmi/third_party/tao/pegtl.hpp:10,
2021-07-28T20:48:16,537                    from include/gemmi/numb.hpp:13,
2021-07-28T20:48:16,537                    from python/read.cpp:3:
2021-07-28T20:48:16,537   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’:
2021-07-28T20:48:16,537   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:48:16,537      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:48:16,537         |         ^~~~~~~~~~~~~
2021-07-28T20:48:16,538   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:48:16,589   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’:
2021-07-28T20:48:16,589   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:48:16,589   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:48:16,681   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:48:16,681   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,681   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,682   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::TlsGroup*, std::vector<gemmi::TlsGroup> >’ changed in GCC 7.1
2021-07-28T20:48:16,682     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:48:16,683         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,683     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:48:16,683         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,683     149 |            && __assignable>::
2021-07-28T20:48:16,683         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,683     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:48:16,683         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,865   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’:
2021-07-28T20:48:16,865   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,865      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:48:16,865         |         ^~~~~~~~~~~~~
2021-07-28T20:48:16,865   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,930   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’:
2021-07-28T20:48:16,930   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::ExperimentInfo*, std::vector<gemmi::ExperimentInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,930     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:48:16,931         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,931     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:48:16,931         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,931     149 |            && __assignable>::
2021-07-28T20:48:16,931         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,931     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:48:16,931         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,932   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::CrystalInfo*, std::vector<gemmi::CrystalInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,932     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:48:16,932         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,932     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:48:16,932         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,932     149 |            && __assignable>::
2021-07-28T20:48:16,932         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,932     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:48:16,932         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,933   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:48:16,933     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:48:16,933         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,933     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:48:16,933         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,933     149 |            && __assignable>::
2021-07-28T20:48:16,933         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:16,933     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:48:16,933         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:17,089   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’:
2021-07-28T20:48:17,089   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Assembly*, std::vector<gemmi::Assembly> >’ changed in GCC 7.1
2021-07-28T20:48:17,089     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:48:17,090         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:17,090     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:48:17,090         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:17,090     149 |            && __assignable>::
2021-07-28T20:48:17,090         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:17,090     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:48:17,090         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:22,689   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/recgrid.cpp -o build/temp.linux-armv7l-3.9/python/recgrid.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:48:56,094   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:48:56,094                    from include/gemmi/unitcell.hpp:9,
2021-07-28T20:48:56,094                    from include/gemmi/asudata.hpp:11,
2021-07-28T20:48:56,095                    from include/gemmi/recgrid.hpp:8,
2021-07-28T20:48:56,095                    from python/recgrid.cpp:3:
2021-07-28T20:48:56,095   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator<gemmi::FTransform>]’:
2021-07-28T20:48:56,095   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:48:56,095     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:48:56,095         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:48:56,095   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::FTransform>::iterator’ changed in GCC 7.1
2021-07-28T20:48:56,181   /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’:
2021-07-28T20:48:56,182   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::FTransform*, std::vector<gemmi::FTransform> >’ changed in GCC 7.1
2021-07-28T20:48:56,182     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:48:56,182         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:49:21,529   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/search.cpp -o build/temp.linux-armv7l-3.9/python/search.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:49:51,564   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:49:51,564                    from include/gemmi/neighbor.hpp:9,
2021-07-28T20:49:51,564                    from python/search.cpp:3:
2021-07-28T20:49:51,564   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator<gemmi::Fractional>]’:
2021-07-28T20:49:51,564   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<gemmi::Fractional>::iterator’ changed in GCC 7.1
2021-07-28T20:49:51,565     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:49:51,565         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:49:51,658   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:49:51,658                    from include/gemmi/neighbor.hpp:9,
2021-07-28T20:49:51,658                    from python/search.cpp:3:
2021-07-28T20:49:51,659   /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::add_site(const gemmi::SmallStructure::Site&, int)’:
2021-07-28T20:49:51,659   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<gemmi::Fractional*, std::vector<gemmi::Fractional> >’ changed in GCC 7.1
2021-07-28T20:49:51,659    1198 |    _M_realloc_insert(end(), __x);
2021-07-28T20:49:51,659         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-28T20:50:09,878   In file included from /usr/include/c++/10/vector:66,
2021-07-28T20:50:09,878                    from include/gemmi/neighbor.hpp:9,
2021-07-28T20:50:09,878                    from python/search.cpp:3:
2021-07-28T20:50:09,879   /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’:
2021-07-28T20:50:09,879   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:50:09,879      84 |         __uninit_copy(_InputIterator __first, _InputIterator __last,
2021-07-28T20:50:09,879         |         ^~~~~~~~~~~~~
2021-07-28T20:50:09,879   /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:50:10,019   /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’:
2021-07-28T20:50:10,019   /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::Restraints::Plane*, std::vector<gemmi::Restraints::Plane> >’ changed in GCC 7.1
2021-07-28T20:50:10,019     147 |       return std::__uninitialized_copy<__is_trivial(_ValueType1)
2021-07-28T20:50:10,019         |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:10,019     148 |            && __is_trivial(_ValueType2)
2021-07-28T20:50:10,019         |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:10,020     149 |            && __assignable>::
2021-07-28T20:50:10,020         |            ~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:10,020     150 |  __uninit_copy(__first, __last, __result);
2021-07-28T20:50:10,020         |  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:10,800   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sf.cpp -o build/temp.linux-armv7l-3.9/python/sf.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:50:39,464   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:50:39,464                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:50:39,464                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:50:39,464                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:50:39,465                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:50:39,465                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:50:39,465                    from python/common.h:3,
2021-07-28T20:50:39,465                    from python/sf.cpp:3:
2021-07-28T20:50:39,465   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-28T20:50:39,465   /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-28T20:50:39,465     509 |     vector<_Tp, _Alloc>::
2021-07-28T20:50:39,465         |     ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:39,720   In file included from /usr/include/c++/10/vector:67,
2021-07-28T20:50:39,720                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160,
2021-07-28T20:50:39,720                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12,
2021-07-28T20:50:39,720                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13,
2021-07-28T20:50:39,721                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13,
2021-07-28T20:50:39,721                    from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44,
2021-07-28T20:50:39,721                    from python/common.h:3,
2021-07-28T20:50:39,721                    from python/sf.cpp:3:
2021-07-28T20:50:39,721   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::C4322<double>]’:
2021-07-28T20:50:39,721   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-28T20:50:39,721     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-07-28T20:50:39,722         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:39,944   /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex<double> gemmi::StructureFactorCalculator<Table>::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::IT92<double>]’:
2021-07-28T20:50:39,945   /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-28T20:50:39,945     960 |    _M_fill_insert(end(), __new_size - size(), __x);
2021-07-28T20:50:39,945         |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:50:42,345   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sym.cpp -o build/temp.linux-armv7l-3.9/python/sym.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:51:23,380   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/unitcell.cpp -o build/temp.linux-armv7l-3.9/python/unitcell.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:51:48,984   In file included from /usr/include/c++/10/vector:72,
2021-07-28T20:51:48,984                    from include/gemmi/unitcell.hpp:9,
2021-07-28T20:51:48,985                    from python/unitcell.cpp:3:
2021-07-28T20:51:48,985   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-28T20:51:48,985   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
2021-07-28T20:51:48,985     426 |       vector<_Tp, _Alloc>::
2021-07-28T20:51:48,985         |       ^~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:04,909   /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize<add_smat33<double>::<lambda(const M&, pybind11::array_t<int>)>, pybind11::array_t<double, 16>, {const gemmi::SMat33<double>&, pybind11::array_t<int, 16>}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg}>::<lambda(pybind11::detail::function_call&)>::_FUN(pybind11::detail::function_call&)’:
2021-07-28T20:52:04,909   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2021-07-28T20:52:04,910     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2021-07-28T20:52:04,910         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:05,981   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/write.cpp -o build/temp.linux-armv7l-3.9/python/write.o -DVERSION_INFO="0.4.4" -std=c++14 -fvisibility=hidden -g0
2021-07-28T20:52:25,262   In file included from /usr/include/c++/10/bits/char_traits.h:39,
2021-07-28T20:52:25,262                    from /usr/include/c++/10/string:40,
2021-07-28T20:52:25,262                    from include/gemmi/sprintf.hpp:19,
2021-07-28T20:52:25,262                    from python/write.cpp:4:
2021-07-28T20:52:25,262   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Metadata::has(std::string gemmi::RefinementInfo::*) const::<lambda(const gemmi::RefinementInfo&)> >]’:
2021-07-28T20:52:25,262   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:25,262    1921 |     __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
2021-07-28T20:52:25,263         |     ^~~~~~~~~
2021-07-28T20:52:25,263   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:25,290   /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<gemmi::Metadata::has(double gemmi::RefinementInfo::*) const::<lambda(const gemmi::RefinementInfo&)> >]’:
2021-07-28T20:52:25,291   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:25,291   /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,623   /usr/include/c++/10/bits/stl_algobase.h: In function ‘void gemmi::update_mmcif_block(const gemmi::Structure&, gemmi::cif::Block&, gemmi::MmcifOutputGroups)’:
2021-07-28T20:52:42,623   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,623    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,624         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,624    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,624         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,624   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,624    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,624         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,624    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,625         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,625   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,625    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,625         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,625    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,625         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,625   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,625    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,626         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,626    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,626         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,626   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,626    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,626         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,627    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,627         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,627   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,627    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,627         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,627    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,627         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,627   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,628    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,628         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,628    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,628         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,628   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,628    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,628         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,628    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,629         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,629   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,629    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,629         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,629    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,629         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,629   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,630    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,630         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,630    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,630         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,630   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,630    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,630         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,630    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,631         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,631   /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const gemmi::RefinementInfo*, std::vector<gemmi::RefinementInfo> >’ changed in GCC 7.1
2021-07-28T20:52:42,631    1974 |       return __find_if(__first, __last, __pred,
2021-07-28T20:52:42,631         |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:42,631    1975 |          std::__iterator_category(__first));
2021-07-28T20:52:42,631         |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-28T20:52:58,471   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/python/align.o build/temp.linux-armv7l-3.9/python/ccp4.o build/temp.linux-armv7l-3.9/python/cif.o build/temp.linux-armv7l-3.9/python/elem.o build/temp.linux-armv7l-3.9/python/gemmi.o build/temp.linux-armv7l-3.9/python/grid.o build/temp.linux-armv7l-3.9/python/hkl.o build/temp.linux-armv7l-3.9/python/meta.o build/temp.linux-armv7l-3.9/python/mol.o build/temp.linux-armv7l-3.9/python/monlib.o build/temp.linux-armv7l-3.9/python/mtz.o build/temp.linux-armv7l-3.9/python/read.o build/temp.linux-armv7l-3.9/python/recgrid.o build/temp.linux-armv7l-3.9/python/search.o build/temp.linux-armv7l-3.9/python/sf.o build/temp.linux-armv7l-3.9/python/sym.o build/temp.linux-armv7l-3.9/python/unitcell.o build/temp.linux-armv7l-3.9/python/write.o -Lbuild/temp.linux-armv7l-3.9 -lgemmi_zlib -lgemmi_zlib -o build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -Wl,-s
2021-07-28T20:53:01,867   installing to build/bdist.linux-armv7l/wheel
2021-07-28T20:53:01,867   running install
2021-07-28T20:53:01,869   running install_lib
2021-07-28T20:53:01,874   creating build/bdist.linux-armv7l
2021-07-28T20:53:01,874   creating build/bdist.linux-armv7l/wheel
2021-07-28T20:53:01,876   creating build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,878   copying build/lib.linux-armv7l-3.9/gemmi-examples/weight.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,881   copying build/lib.linux-armv7l-3.9/gemmi-examples/cif_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,883   copying build/lib.linux-armv7l-3.9/gemmi-examples/col_order.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,885   copying build/lib.linux-armv7l-3.9/gemmi-examples/from_json.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,887   copying build/lib.linux-armv7l-3.9/gemmi-examples/maskdiff.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,889   copying build/lib.linux-armv7l-3.9/gemmi-examples/long_geom.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,891   copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_plot.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,894   copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_subgraph.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,896   copying build/lib.linux-armv7l-3.9/gemmi-examples/mtrix_iso.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,898   copying build/lib.linux-armv7l-3.9/gemmi-examples/map2mtz.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,900   copying build/lib.linux-armv7l-3.9/gemmi-examples/__init__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,902   copying build/lib.linux-armv7l-3.9/gemmi-examples/matthews.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,905   copying build/lib.linux-armv7l-3.9/gemmi-examples/mtz_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,907   copying build/lib.linux-armv7l-3.9/gemmi-examples/merge_mtz_mmcif.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,910   copying build/lib.linux-armv7l-3.9/gemmi-examples/aafreq.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,912   copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_gi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,914   copying build/lib.linux-armv7l-3.9/gemmi-examples/monomers.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,917   copying build/lib.linux-armv7l-3.9/gemmi-examples/sub_ccd.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,920   copying build/lib.linux-armv7l-3.9/gemmi-examples/__main__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,922   copying build/lib.linux-armv7l-3.9/gemmi-examples/simple_search.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,924   copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_gather.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,927   copying build/lib.linux-armv7l-3.9/gemmi-examples/patterson_slice.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,929   copying build/lib.linux-armv7l-3.9/gemmi-examples/hello.py -> build/bdist.linux-armv7l/wheel/gemmi-examples
2021-07-28T20:53:01,931   copying build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-28T20:53:02,025   running install_egg_info
2021-07-28T20:53:02,047   running egg_info
2021-07-28T20:53:02,048   writing gemmi.egg-info/PKG-INFO
2021-07-28T20:53:02,050   writing dependency_links to gemmi.egg-info/dependency_links.txt
2021-07-28T20:53:02,052   writing top-level names to gemmi.egg-info/top_level.txt
2021-07-28T20:53:02,067   reading manifest file 'gemmi.egg-info/SOURCES.txt'
2021-07-28T20:53:02,119   reading manifest template 'MANIFEST.in'
2021-07-28T20:53:02,254   adding license file 'LICENSE.txt'
2021-07-28T20:53:02,274   writing manifest file 'gemmi.egg-info/SOURCES.txt'
2021-07-28T20:53:02,276   Copying gemmi.egg-info to build/bdist.linux-armv7l/wheel/gemmi-0.4.4-py3.9.egg-info
2021-07-28T20:53:02,287   running install_scripts
2021-07-28T20:53:02,366   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-28T20:53:02,371   creating build/bdist.linux-armv7l/wheel/gemmi-0.4.4.dist-info/WHEEL
2021-07-28T20:53:02,374   creating '/tmp/pip-wheel-3zn6o085/gemmi-0.4.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-28T20:53:03,239   adding 'gemmi.cpython-39-arm-linux-gnueabihf.so'
2021-07-28T20:53:03,280   adding 'gemmi-examples/__init__.py'
2021-07-28T20:53:03,281   adding 'gemmi-examples/__main__.py'
2021-07-28T20:53:03,282   adding 'gemmi-examples/aafreq.py'
2021-07-28T20:53:03,283   adding 'gemmi-examples/ccd_gi.py'
2021-07-28T20:53:03,285   adding 'gemmi-examples/ccd_subgraph.py'
2021-07-28T20:53:03,286   adding 'gemmi-examples/cif_i_sigi.py'
2021-07-28T20:53:03,287   adding 'gemmi-examples/col_order.py'
2021-07-28T20:53:03,288   adding 'gemmi-examples/from_json.py'
2021-07-28T20:53:03,289   adding 'gemmi-examples/hello.py'
2021-07-28T20:53:03,290   adding 'gemmi-examples/long_geom.py'
2021-07-28T20:53:03,291   adding 'gemmi-examples/map2mtz.py'
2021-07-28T20:53:03,293   adding 'gemmi-examples/maskdiff.py'
2021-07-28T20:53:03,294   adding 'gemmi-examples/matthews.py'
2021-07-28T20:53:03,295   adding 'gemmi-examples/merge_mtz_mmcif.py'
2021-07-28T20:53:03,297   adding 'gemmi-examples/monomers.py'
2021-07-28T20:53:03,298   adding 'gemmi-examples/mtrix_iso.py'
2021-07-28T20:53:03,299   adding 'gemmi-examples/mtz_i_sigi.py'
2021-07-28T20:53:03,301   adding 'gemmi-examples/patterson_slice.py'
2021-07-28T20:53:03,302   adding 'gemmi-examples/rama_gather.py'
2021-07-28T20:53:03,303   adding 'gemmi-examples/rama_plot.py'
2021-07-28T20:53:03,304   adding 'gemmi-examples/simple_search.py'
2021-07-28T20:53:03,306   adding 'gemmi-examples/sub_ccd.py'
2021-07-28T20:53:03,307   adding 'gemmi-examples/weight.py'
2021-07-28T20:53:03,310   adding 'gemmi-0.4.4.dist-info/LICENSE.txt'
2021-07-28T20:53:03,311   adding 'gemmi-0.4.4.dist-info/METADATA'
2021-07-28T20:53:03,312   adding 'gemmi-0.4.4.dist-info/WHEEL'
2021-07-28T20:53:03,313   adding 'gemmi-0.4.4.dist-info/top_level.txt'
2021-07-28T20:53:03,314   adding 'gemmi-0.4.4.dist-info/RECORD'
2021-07-28T20:53:03,344   removing build/bdist.linux-armv7l/wheel
2021-07-28T20:53:03,447   Building wheel for gemmi (setup.py): finished with status 'done'
2021-07-28T20:53:03,477   Created wheel for gemmi: filename=gemmi-0.4.4-cp39-cp39-linux_armv7l.whl size=1884596 sha256=ecb1d58813e479b6b68b682e7ad8914e31dd13b3b301dd7204a52e89ff165e0b
2021-07-28T20:53:03,477   Stored in directory: /tmp/pip-ephem-wheel-cache-b4t6e73h/wheels/5b/67/de/e161e117522f2fd958a30502cfc461b28d2d22ac27afec28bd
2021-07-28T20:53:03,489 Successfully built gemmi
2021-07-28T20:53:03,563 Removed build tracker: '/tmp/pip-req-tracker-vizw7ff6'