2021-07-28T22:25:58,230 Created temporary directory: /tmp/pip-ephem-wheel-cache-lfjgen13 2021-07-28T22:25:58,232 Created temporary directory: /tmp/pip-req-tracker-vphy6jnf 2021-07-28T22:25:58,233 Initialized build tracking at /tmp/pip-req-tracker-vphy6jnf 2021-07-28T22:25:58,233 Created build tracker: /tmp/pip-req-tracker-vphy6jnf 2021-07-28T22:25:58,233 Entered build tracker: /tmp/pip-req-tracker-vphy6jnf 2021-07-28T22:25:58,234 Created temporary directory: /tmp/pip-wheel-0a_dvymx 2021-07-28T22:25:58,265 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-28T22:25:58,265 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-28T22:25:58,266 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-28T22:25:58,266 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-28T22:25:58,266 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-28T22:25:58,269 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-28T22:25:58,402 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-28T22:25:58,403 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-28T22:25:58,403 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-28T22:25:58,403 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-28T22:25:58,403 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-28T22:25:58,404 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-28T22:25:58,404 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-28T22:25:58,404 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-28T22:25:58,404 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-28T22:25:58,405 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-28T22:25:58,405 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-28T22:25:58,405 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-28T22:25:58,405 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-28T22:25:58,406 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-28T22:25:58,406 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-28T22:25:58,406 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-28T22:25:58,406 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-28T22:25:58,407 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-28T22:25:58,432 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-28T22:25:58,449 Collecting jcvi==1.1.7 2021-07-28T22:25:58,450 Created temporary directory: /tmp/pip-unpack-nfa7g4cp 2021-07-28T22:25:58,852 Downloading jcvi-1.1.7.tar.gz (819 kB) 2021-07-28T22:25:59,617 Added jcvi==1.1.7 from https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 to build tracker '/tmp/pip-req-tracker-vphy6jnf' 2021-07-28T22:25:59,618 Running setup.py (path:/tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6/setup.py) egg_info for package jcvi 2021-07-28T22:25:59,618 Created temporary directory: /tmp/pip-pip-egg-info-ij4g2qb9 2021-07-28T22:25:59,619 Running command python setup.py egg_info 2021-07-28T22:26:01,040 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.7' to '1.1.7' 2021-07-28T22:26:01,041 warnings.warn(tmpl.format(**locals())) 2021-07-28T22:26:01,092 running egg_info 2021-07-28T22:26:01,094 creating /tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info 2021-07-28T22:26:01,095 writing /tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/PKG-INFO 2021-07-28T22:26:01,098 writing dependency_links to /tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/dependency_links.txt 2021-07-28T22:26:01,100 writing requirements to /tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/requires.txt 2021-07-28T22:26:01,101 writing top-level names to /tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/top_level.txt 2021-07-28T22:26:01,102 writing manifest file '/tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/SOURCES.txt' 2021-07-28T22:26:01,127 reading manifest file '/tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/SOURCES.txt' 2021-07-28T22:26:01,128 reading manifest template 'MANIFEST.in' 2021-07-28T22:26:01,132 adding license file 'LICENSE' 2021-07-28T22:26:01,140 writing manifest file '/tmp/pip-pip-egg-info-ij4g2qb9/jcvi.egg-info/SOURCES.txt' 2021-07-28T22:26:01,239 Source in /tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6 has version 1.1.7, which satisfies requirement jcvi==1.1.7 from https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 2021-07-28T22:26:01,240 Removed jcvi==1.1.7 from https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 from build tracker '/tmp/pip-req-tracker-vphy6jnf' 2021-07-28T22:26:01,245 Created temporary directory: /tmp/pip-unpack-_g77pt4_ 2021-07-28T22:26:01,245 Building wheels for collected packages: jcvi 2021-07-28T22:26:01,249 Created temporary directory: /tmp/pip-wheel-pg26qj8u 2021-07-28T22:26:01,250 Building wheel for jcvi (setup.py): started 2021-07-28T22:26:01,250 Destination directory: /tmp/pip-wheel-pg26qj8u 2021-07-28T22:26:01,250 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pg26qj8u 2021-07-28T22:26:02,628 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.7' to '1.1.7' 2021-07-28T22:26:02,629 warnings.warn(tmpl.format(**locals())) 2021-07-28T22:26:02,693 running bdist_wheel 2021-07-28T22:26:02,697 running build 2021-07-28T22:26:02,697 running build_py 2021-07-28T22:26:02,702 creating build 2021-07-28T22:26:02,703 creating build/lib.linux-armv7l-3.9 2021-07-28T22:26:02,703 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-28T22:26:02,705 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T22:26:02,706 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-28T22:26:02,709 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,710 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,712 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,715 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,718 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,720 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,722 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,725 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,727 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,729 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,732 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-28T22:26:02,735 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,735 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,739 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,741 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,743 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,746 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,749 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,751 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,754 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,757 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,759 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,762 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,764 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,766 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,769 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,772 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,775 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,776 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,779 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,781 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,784 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,786 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,788 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,791 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-28T22:26:02,793 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,794 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,796 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,799 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,801 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,804 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,807 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,809 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,813 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,816 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,818 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,821 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-28T22:26:02,824 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,825 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,827 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,829 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,832 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,834 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,838 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,841 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,843 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,845 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,848 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,851 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,853 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,856 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,858 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,860 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,863 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,866 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,868 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,871 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,874 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,877 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,880 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,882 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,884 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,886 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,888 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,891 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:02,894 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,895 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,897 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,900 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,903 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,905 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,908 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,910 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,913 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,915 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,918 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,921 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,923 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-28T22:26:02,927 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,927 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,929 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,932 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,934 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,938 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,941 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,943 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,946 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,948 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,951 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,953 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,956 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,958 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,961 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,966 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,969 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,972 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-28T22:26:02,975 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,975 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,979 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,980 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,983 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,985 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,987 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,989 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,992 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,994 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,997 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:02,999 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:03,001 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-28T22:26:03,004 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,005 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,008 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,011 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,013 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,016 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,020 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,022 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,024 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,027 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,029 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,032 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,034 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,037 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,039 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,041 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,044 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,046 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,048 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,050 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,053 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,054 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,057 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,060 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,062 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,064 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,066 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-28T22:26:03,069 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,070 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,072 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,074 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,077 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,079 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,081 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,085 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,088 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,100 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,103 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,105 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,108 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,110 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-28T22:26:03,113 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,114 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,116 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,118 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,121 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,124 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,126 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,128 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,131 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,135 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,137 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,140 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,143 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,146 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,148 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,150 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,152 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,155 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,159 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,162 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,164 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,166 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,168 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,170 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,172 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,176 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,179 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,183 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,185 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,187 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,191 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,193 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,193 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,195 running egg_info 2021-07-28T22:26:03,227 writing jcvi.egg-info/PKG-INFO 2021-07-28T22:26:03,229 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-28T22:26:03,231 writing requirements to jcvi.egg-info/requires.txt 2021-07-28T22:26:03,233 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-28T22:26:03,253 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T22:26:03,259 reading manifest template 'MANIFEST.in' 2021-07-28T22:26:03,263 adding license file 'LICENSE' 2021-07-28T22:26:03,274 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-28T22:26:03,281 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:03,283 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:03,285 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,288 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,293 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,296 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,300 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,303 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,305 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,307 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,310 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,312 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,316 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,319 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-28T22:26:03,338 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-28T22:26:03,339 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.7' 2021-07-28T22:26:03,339 running build_ext 2021-07-28T22:26:03,398 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-28T22:26:04,016 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6/jcvi/assembly/chic.pyx 2021-07-28T22:26:04,017 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T22:26:06,957 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-28T22:26:06,964 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0a_dvymx/jcvi_d6a694b540d84cd7bc3aa14ffe8bacc6/jcvi/formats/cblast.pyx 2021-07-28T22:26:06,964 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-28T22:26:07,912 building 'jcvi.assembly.chic' extension 2021-07-28T22:26:07,912 creating build/temp.linux-armv7l-3.9 2021-07-28T22:26:07,912 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-28T22:26:07,913 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-28T22:26:07,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-28T22:26:08,379 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-28T22:26:08,380 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-28T22:26:08,380 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-28T22:26:08,381 from jcvi/assembly/chic.c:620: 2021-07-28T22:26:08,381 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-28T22:26:08,381 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-28T22:26:08,382 | ^~~~~~~ 2021-07-28T22:26:12,140 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-28T22:26:12,274 building 'jcvi.formats.cblast' extension 2021-07-28T22:26:12,275 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-28T22:26:12,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-28T22:26:21,722 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-28T22:26:21,883 installing to build/bdist.linux-armv7l/wheel 2021-07-28T22:26:21,883 running install 2021-07-28T22:26:21,884 running install_lib 2021-07-28T22:26:21,888 creating build/bdist.linux-armv7l 2021-07-28T22:26:21,888 creating build/bdist.linux-armv7l/wheel 2021-07-28T22:26:21,890 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T22:26:21,891 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,892 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,894 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,897 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,901 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,903 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,905 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,907 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,909 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,912 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,914 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-28T22:26:21,917 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,918 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,921 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,923 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,925 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,928 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,931 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,934 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,937 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,940 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,943 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,946 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,948 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,951 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,954 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,957 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,960 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,962 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,964 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,967 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,969 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,971 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,974 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,976 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-28T22:26:21,979 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,980 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,982 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,985 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,988 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,991 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,994 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:21,996 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:22,000 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:22,003 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:22,006 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:22,009 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-28T22:26:22,012 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,013 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,015 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,017 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,020 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,022 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,025 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,029 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,033 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,035 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,038 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,041 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,045 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,056 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,058 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,061 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,064 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,065 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,069 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,071 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,073 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,076 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,081 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,083 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,086 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,089 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,091 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,094 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,095 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,099 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-28T22:26:22,102 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,103 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,105 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,108 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,111 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,114 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,116 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,119 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,122 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,124 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,128 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,131 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,132 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-28T22:26:22,136 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,137 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,139 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,142 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,144 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,148 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,151 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,154 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,157 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,160 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,163 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,166 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,169 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,172 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,174 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,177 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,179 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,183 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-28T22:26:22,186 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,187 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,191 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,193 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,196 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,198 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,201 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,203 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,206 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,209 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,211 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,214 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,216 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-28T22:26:22,219 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,220 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,223 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,226 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,228 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,231 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,235 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,238 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,240 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,244 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,246 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,249 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,252 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,254 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,257 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,260 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,263 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,266 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,268 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,270 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,274 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,276 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,279 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,283 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,286 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,288 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,290 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-28T22:26:22,293 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,294 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,296 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,298 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,301 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,305 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,308 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,311 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,313 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,317 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,318 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,323 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,325 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,327 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,330 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,333 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,335 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,337 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,341 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,346 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,348 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,351 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,354 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-28T22:26:22,355 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,358 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,361 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,363 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,365 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-28T22:26:22,368 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,369 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,371 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,373 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,377 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,379 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,399 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,402 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,404 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,406 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,411 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,412 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,415 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,418 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,421 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,424 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,426 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,428 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,431 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,433 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,438 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,441 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,443 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,445 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,447 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,450 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,452 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,456 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,458 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,462 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,465 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,467 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,470 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-28T22:26:22,472 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T22:26:22,474 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-28T22:26:22,476 running install_egg_info 2021-07-28T22:26:22,485 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.7-py3.9.egg-info 2021-07-28T22:26:22,501 running install_scripts 2021-07-28T22:26:22,567 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-28T22:26:22,572 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.7.dist-info/WHEEL 2021-07-28T22:26:22,575 creating '/tmp/pip-wheel-pg26qj8u/jcvi-1.1.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-28T22:26:22,577 adding 'jcvi/__init__.py' 2021-07-28T22:26:22,579 adding 'jcvi/_version.py' 2021-07-28T22:26:22,581 adding 'jcvi/algorithms/__init__.py' 2021-07-28T22:26:22,582 adding 'jcvi/algorithms/__main__.py' 2021-07-28T22:26:22,584 adding 'jcvi/algorithms/ec.py' 2021-07-28T22:26:22,585 adding 'jcvi/algorithms/formula.py' 2021-07-28T22:26:22,588 adding 'jcvi/algorithms/graph.py' 2021-07-28T22:26:22,590 adding 'jcvi/algorithms/lis.py' 2021-07-28T22:26:22,593 adding 'jcvi/algorithms/lpsolve.py' 2021-07-28T22:26:22,595 adding 'jcvi/algorithms/matrix.py' 2021-07-28T22:26:22,597 adding 'jcvi/algorithms/maxsum.py' 2021-07-28T22:26:22,598 adding 'jcvi/algorithms/ml.py' 2021-07-28T22:26:22,599 adding 'jcvi/algorithms/supermap.py' 2021-07-28T22:26:22,602 adding 'jcvi/algorithms/tsp.py' 2021-07-28T22:26:22,604 adding 'jcvi/annotation/__init__.py' 2021-07-28T22:26:22,605 adding 'jcvi/annotation/__main__.py' 2021-07-28T22:26:22,608 adding 'jcvi/annotation/ahrd.py' 2021-07-28T22:26:22,610 adding 'jcvi/annotation/automaton.py' 2021-07-28T22:26:22,612 adding 'jcvi/annotation/depth.py' 2021-07-28T22:26:22,613 adding 'jcvi/annotation/evm.py' 2021-07-28T22:26:22,616 adding 'jcvi/annotation/maker.py' 2021-07-28T22:26:22,618 adding 'jcvi/annotation/pasa.py' 2021-07-28T22:26:22,621 adding 'jcvi/annotation/qc.py' 2021-07-28T22:26:22,627 adding 'jcvi/annotation/reformat.py' 2021-07-28T22:26:22,629 adding 'jcvi/annotation/stats.py' 2021-07-28T22:26:22,631 adding 'jcvi/annotation/train.py' 2021-07-28T22:26:22,634 adding 'jcvi/apps/__init__.py' 2021-07-28T22:26:22,635 adding 'jcvi/apps/__main__.py' 2021-07-28T22:26:22,637 adding 'jcvi/apps/align.py' 2021-07-28T22:26:22,646 adding 'jcvi/apps/base.py' 2021-07-28T22:26:22,648 adding 'jcvi/apps/biomart.py' 2021-07-28T22:26:22,650 adding 'jcvi/apps/blastplus.py' 2021-07-28T22:26:22,651 adding 'jcvi/apps/bowtie.py' 2021-07-28T22:26:22,653 adding 'jcvi/apps/bwa.py' 2021-07-28T22:26:22,655 adding 'jcvi/apps/cap3.py' 2021-07-28T22:26:22,657 adding 'jcvi/apps/cdhit.py' 2021-07-28T22:26:22,658 adding 'jcvi/apps/emboss.py' 2021-07-28T22:26:22,661 adding 'jcvi/apps/fetch.py' 2021-07-28T22:26:22,664 adding 'jcvi/apps/gbsubmit.py' 2021-07-28T22:26:22,666 adding 'jcvi/apps/gmap.py' 2021-07-28T22:26:22,669 adding 'jcvi/apps/grid.py' 2021-07-28T22:26:22,674 adding 'jcvi/apps/ks.py' 2021-07-28T22:26:22,676 adding 'jcvi/apps/lastz.py' 2021-07-28T22:26:22,677 adding 'jcvi/apps/mask.py' 2021-07-28T22:26:22,682 adding 'jcvi/apps/phylo.py' 2021-07-28T22:26:22,684 adding 'jcvi/apps/r.py' 2021-07-28T22:26:22,685 adding 'jcvi/apps/restriction.py' 2021-07-28T22:26:22,687 adding 'jcvi/apps/script.py' 2021-07-28T22:26:22,688 adding 'jcvi/apps/softlink.py' 2021-07-28T22:26:22,693 adding 'jcvi/apps/uclust.py' 2021-07-28T22:26:22,695 adding 'jcvi/apps/uniprot.py' 2021-07-28T22:26:22,696 adding 'jcvi/apps/vecscreen.py' 2021-07-28T22:26:22,699 adding 'jcvi/assembly/__init__.py' 2021-07-28T22:26:22,700 adding 'jcvi/assembly/__main__.py' 2021-07-28T22:26:22,710 adding 'jcvi/assembly/allmaps.py' 2021-07-28T22:26:22,713 adding 'jcvi/assembly/allpaths.py' 2021-07-28T22:26:22,715 adding 'jcvi/assembly/amos.py' 2021-07-28T22:26:22,717 adding 'jcvi/assembly/automaton.py' 2021-07-28T22:26:22,719 adding 'jcvi/assembly/bambus.py' 2021-07-28T22:26:22,720 adding 'jcvi/assembly/base.py' 2021-07-28T22:26:22,725 adding 'jcvi/assembly/ca.py' 2021-07-28T22:26:22,773 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T22:26:22,776 adding 'jcvi/assembly/chic.pyx' 2021-07-28T22:26:22,778 adding 'jcvi/assembly/coverage.py' 2021-07-28T22:26:22,780 adding 'jcvi/assembly/gaps.py' 2021-07-28T22:26:22,783 adding 'jcvi/assembly/geneticmap.py' 2021-07-28T22:26:22,787 adding 'jcvi/assembly/goldenpath.py' 2021-07-28T22:26:22,796 adding 'jcvi/assembly/hic.py' 2021-07-28T22:26:22,801 adding 'jcvi/assembly/kmer.py' 2021-07-28T22:26:22,803 adding 'jcvi/assembly/meraculous.py' 2021-07-28T22:26:22,805 adding 'jcvi/assembly/opticalmap.py' 2021-07-28T22:26:22,810 adding 'jcvi/assembly/patch.py' 2021-07-28T22:26:22,812 adding 'jcvi/assembly/pbjelly.py' 2021-07-28T22:26:22,814 adding 'jcvi/assembly/postprocess.py' 2021-07-28T22:26:22,817 adding 'jcvi/assembly/preprocess.py' 2021-07-28T22:26:22,819 adding 'jcvi/assembly/sim.py' 2021-07-28T22:26:22,821 adding 'jcvi/assembly/soap.py' 2021-07-28T22:26:22,823 adding 'jcvi/assembly/sspace.py' 2021-07-28T22:26:22,826 adding 'jcvi/assembly/syntenypath.py' 2021-07-28T22:26:22,827 adding 'jcvi/assembly/trinity.py' 2021-07-28T22:26:22,830 adding 'jcvi/assembly/unitig.py' 2021-07-28T22:26:22,832 adding 'jcvi/compara/__init__.py' 2021-07-28T22:26:22,833 adding 'jcvi/compara/__main__.py' 2021-07-28T22:26:22,835 adding 'jcvi/compara/blastfilter.py' 2021-07-28T22:26:22,839 adding 'jcvi/compara/catalog.py' 2021-07-28T22:26:22,843 adding 'jcvi/compara/fractionation.py' 2021-07-28T22:26:22,845 adding 'jcvi/compara/pad.py' 2021-07-28T22:26:22,846 adding 'jcvi/compara/phylogeny.py' 2021-07-28T22:26:22,848 adding 'jcvi/compara/quota.py' 2021-07-28T22:26:22,850 adding 'jcvi/compara/reconstruct.py' 2021-07-28T22:26:22,852 adding 'jcvi/compara/synfind.py' 2021-07-28T22:26:22,861 adding 'jcvi/compara/synteny.py' 2021-07-28T22:26:22,864 adding 'jcvi/formats/__init__.py' 2021-07-28T22:26:22,865 adding 'jcvi/formats/__main__.py' 2021-07-28T22:26:22,866 adding 'jcvi/formats/ace.py' 2021-07-28T22:26:22,874 adding 'jcvi/formats/agp.py' 2021-07-28T22:26:22,879 adding 'jcvi/formats/base.py' 2021-07-28T22:26:22,889 adding 'jcvi/formats/bed.py' 2021-07-28T22:26:22,896 adding 'jcvi/formats/blast.py' 2021-07-28T22:26:22,898 adding 'jcvi/formats/btab.py' 2021-07-28T22:26:23,040 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-28T22:26:23,047 adding 'jcvi/formats/cblast.pyx' 2021-07-28T22:26:23,049 adding 'jcvi/formats/cdt.py' 2021-07-28T22:26:23,051 adding 'jcvi/formats/chain.py' 2021-07-28T22:26:23,052 adding 'jcvi/formats/contig.py' 2021-07-28T22:26:23,054 adding 'jcvi/formats/coords.py' 2021-07-28T22:26:23,056 adding 'jcvi/formats/excel.py' 2021-07-28T22:26:23,066 adding 'jcvi/formats/fasta.py' 2021-07-28T22:26:23,071 adding 'jcvi/formats/fastq.py' 2021-07-28T22:26:23,072 adding 'jcvi/formats/fpc.py' 2021-07-28T22:26:23,074 adding 'jcvi/formats/genbank.py' 2021-07-28T22:26:23,089 adding 'jcvi/formats/gff.py' 2021-07-28T22:26:23,091 adding 'jcvi/formats/html.py' 2021-07-28T22:26:23,093 adding 'jcvi/formats/maf.py' 2021-07-28T22:26:23,094 adding 'jcvi/formats/obo.py' 2021-07-28T22:26:23,096 adding 'jcvi/formats/paf.py' 2021-07-28T22:26:23,097 adding 'jcvi/formats/pdf.py' 2021-07-28T22:26:23,099 adding 'jcvi/formats/posmap.py' 2021-07-28T22:26:23,101 adding 'jcvi/formats/psl.py' 2021-07-28T22:26:23,103 adding 'jcvi/formats/pyblast.py' 2021-07-28T22:26:23,106 adding 'jcvi/formats/sam.py' 2021-07-28T22:26:23,108 adding 'jcvi/formats/sbt.py' 2021-07-28T22:26:23,110 adding 'jcvi/formats/sizes.py' 2021-07-28T22:26:23,113 adding 'jcvi/formats/vcf.py' 2021-07-28T22:26:23,115 adding 'jcvi/graphics/__init__.py' 2021-07-28T22:26:23,117 adding 'jcvi/graphics/__main__.py' 2021-07-28T22:26:23,119 adding 'jcvi/graphics/align.py' 2021-07-28T22:26:23,122 adding 'jcvi/graphics/assembly.py' 2021-07-28T22:26:23,125 adding 'jcvi/graphics/base.py' 2021-07-28T22:26:23,127 adding 'jcvi/graphics/blastplot.py' 2021-07-28T22:26:23,130 adding 'jcvi/graphics/chromosome.py' 2021-07-28T22:26:23,132 adding 'jcvi/graphics/coverage.py' 2021-07-28T22:26:23,135 adding 'jcvi/graphics/dotplot.py' 2021-07-28T22:26:23,138 adding 'jcvi/graphics/glyph.py' 2021-07-28T22:26:23,142 adding 'jcvi/graphics/grabseeds.py' 2021-07-28T22:26:23,143 adding 'jcvi/graphics/graph.py' 2021-07-28T22:26:23,145 adding 'jcvi/graphics/heatmap.py' 2021-07-28T22:26:23,147 adding 'jcvi/graphics/histogram.py' 2021-07-28T22:26:23,149 adding 'jcvi/graphics/karyotype.py' 2021-07-28T22:26:23,154 adding 'jcvi/graphics/landscape.py' 2021-07-28T22:26:23,155 adding 'jcvi/graphics/logo.py' 2021-07-28T22:26:23,156 adding 'jcvi/graphics/mummerplot.py' 2021-07-28T22:26:23,159 adding 'jcvi/graphics/synteny.py' 2021-07-28T22:26:23,161 adding 'jcvi/graphics/table.py' 2021-07-28T22:26:23,164 adding 'jcvi/graphics/tree.py' 2021-07-28T22:26:23,165 adding 'jcvi/graphics/wheel.py' 2021-07-28T22:26:23,167 adding 'jcvi/graphics/whisker.py' 2021-07-28T22:26:23,169 adding 'jcvi/projects/__init__.py' 2021-07-28T22:26:23,170 adding 'jcvi/projects/__main__.py' 2021-07-28T22:26:23,173 adding 'jcvi/projects/age.py' 2021-07-28T22:26:23,174 adding 'jcvi/projects/alfalfa.py' 2021-07-28T22:26:23,177 adding 'jcvi/projects/allmaps.py' 2021-07-28T22:26:23,179 adding 'jcvi/projects/bites.py' 2021-07-28T22:26:23,181 adding 'jcvi/projects/heterosis.py' 2021-07-28T22:26:23,183 adding 'jcvi/projects/ies.py' 2021-07-28T22:26:23,186 adding 'jcvi/projects/misc.py' 2021-07-28T22:26:23,190 adding 'jcvi/projects/napus.py' 2021-07-28T22:26:23,192 adding 'jcvi/projects/pineapple.py' 2021-07-28T22:26:23,194 adding 'jcvi/projects/pistachio.py' 2021-07-28T22:26:23,202 adding 'jcvi/projects/str.py' 2021-07-28T22:26:23,205 adding 'jcvi/projects/sugarcane.py' 2021-07-28T22:26:23,209 adding 'jcvi/projects/synfind.py' 2021-07-28T22:26:23,212 adding 'jcvi/projects/tgbs.py' 2021-07-28T22:26:23,214 adding 'jcvi/projects/vanilla.py' 2021-07-28T22:26:23,216 adding 'jcvi/utils/__init__.py' 2021-07-28T22:26:23,217 adding 'jcvi/utils/__main__.py' 2021-07-28T22:26:23,220 adding 'jcvi/utils/aws.py' 2021-07-28T22:26:23,222 adding 'jcvi/utils/cbook.py' 2021-07-28T22:26:23,224 adding 'jcvi/utils/console.py' 2021-07-28T22:26:23,225 adding 'jcvi/utils/db.py' 2021-07-28T22:26:23,227 adding 'jcvi/utils/ez_setup.py' 2021-07-28T22:26:23,228 adding 'jcvi/utils/grouper.py' 2021-07-28T22:26:23,230 adding 'jcvi/utils/orderedcollections.py' 2021-07-28T22:26:23,233 adding 'jcvi/utils/range.py' 2021-07-28T22:26:23,234 adding 'jcvi/utils/table.py' 2021-07-28T22:26:23,236 adding 'jcvi/utils/taxonomy.py' 2021-07-28T22:26:23,237 adding 'jcvi/utils/webcolors.py' 2021-07-28T22:26:23,241 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-28T22:26:23,258 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-28T22:26:23,262 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-28T22:26:23,268 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-28T22:26:23,272 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-28T22:26:23,273 adding 'jcvi/utils/data/__init__.py' 2021-07-28T22:26:23,274 adding 'jcvi/utils/data/adapters.fasta' 2021-07-28T22:26:23,275 adding 'jcvi/utils/data/blosum80.mat' 2021-07-28T22:26:23,277 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-28T22:26:23,278 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-28T22:26:23,285 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-28T22:26:23,287 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-28T22:26:23,289 adding 'jcvi/utils/data/instance.json' 2021-07-28T22:26:23,290 adding 'jcvi/variation/__init__.py' 2021-07-28T22:26:23,292 adding 'jcvi/variation/__main__.py' 2021-07-28T22:26:23,297 adding 'jcvi/variation/cnv.py' 2021-07-28T22:26:23,299 adding 'jcvi/variation/deconvolute.py' 2021-07-28T22:26:23,301 adding 'jcvi/variation/delly.py' 2021-07-28T22:26:23,303 adding 'jcvi/variation/impute.py' 2021-07-28T22:26:23,305 adding 'jcvi/variation/phase.py' 2021-07-28T22:26:23,307 adding 'jcvi/variation/snp.py' 2021-07-28T22:26:23,313 adding 'jcvi/variation/str.py' 2021-07-28T22:26:23,315 adding 'jcvi/variation/tassel.py' 2021-07-28T22:26:23,318 adding 'jcvi-1.1.7.dist-info/LICENSE' 2021-07-28T22:26:23,319 adding 'jcvi-1.1.7.dist-info/METADATA' 2021-07-28T22:26:23,321 adding 'jcvi-1.1.7.dist-info/WHEEL' 2021-07-28T22:26:23,321 adding 'jcvi-1.1.7.dist-info/top_level.txt' 2021-07-28T22:26:23,325 adding 'jcvi-1.1.7.dist-info/RECORD' 2021-07-28T22:26:23,349 removing build/bdist.linux-armv7l/wheel 2021-07-28T22:26:23,642 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-28T22:26:23,659 Created wheel for jcvi: filename=jcvi-1.1.7-cp39-cp39-linux_armv7l.whl size=1231986 sha256=42d3da47ae47d9724fe2cd2b77234107d13b8b704e4a770369ab14cdb500bcc5 2021-07-28T22:26:23,660 Stored in directory: /tmp/pip-ephem-wheel-cache-lfjgen13/wheels/3d/ac/ee/5b9c8f699f6583adcac0efa30db8d933827068213bf510a748 2021-07-28T22:26:23,676 Successfully built jcvi 2021-07-28T22:26:23,730 Removed build tracker: '/tmp/pip-req-tracker-vphy6jnf'