2021-07-29T01:58:01,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-2c6_8b5m
2021-07-29T01:58:01,078 Created temporary directory: /tmp/pip-req-tracker-2w01iyb7
2021-07-29T01:58:01,079 Initialized build tracking at /tmp/pip-req-tracker-2w01iyb7
2021-07-29T01:58:01,079 Created build tracker: /tmp/pip-req-tracker-2w01iyb7
2021-07-29T01:58:01,079 Entered build tracker: /tmp/pip-req-tracker-2w01iyb7
2021-07-29T01:58:01,080 Created temporary directory: /tmp/pip-wheel-dbszemkx
2021-07-29T01:58:01,115 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T01:58:01,115 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T01:58:01,115 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T01:58:01,116 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T01:58:01,116 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T01:58:01,118 WARNING: Location '/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T01:58:01,119 WARNING: Location 't/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T01:58:01,119 WARNING: Location 'm/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T01:58:01,119 WARNING: Location 'p/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T01:58:01,120 1 location(s) to search for versions of adaptivepele:
2021-07-29T01:58:01,120 * https://pypi.org/simple/adaptivepele/
2021-07-29T01:58:01,120 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-07-29T01:58:01,121 Getting page https://pypi.org/simple/adaptivepele/
2021-07-29T01:58:01,122 Found index url https://pypi.org/simple
2021-07-29T01:58:01,304   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-07-29T01:58:01,305   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-07-29T01:58:01,305   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-07-29T01:58:01,306   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-07-29T01:58:01,306   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-07-29T01:58:01,306   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-07-29T01:58:01,306   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-07-29T01:58:01,307 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2021-07-29T01:58:01,324 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-07-29T01:58:01,340 Collecting adaptivepele==1.7
2021-07-29T01:58:01,342   Created temporary directory: /tmp/pip-unpack-1_qxa4tt
2021-07-29T01:58:01,389   Downloading AdaptivePELE-1.7.tar.gz (7.0 MB)
2021-07-29T01:58:03,540   Added adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb to build tracker '/tmp/pip-req-tracker-2w01iyb7'
2021-07-29T01:58:03,541     Running setup.py (path:/tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/setup.py) egg_info for package adaptivepele
2021-07-29T01:58:03,542     Created temporary directory: /tmp/pip-pip-egg-info-pdbvabek
2021-07-29T01:58:03,542     Running command python setup.py egg_info
2021-07-29T01:58:04,770     Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-29T01:58:04,891     running egg_info
2021-07-29T01:58:04,894     creating /tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info
2021-07-29T01:58:04,894     writing /tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/PKG-INFO
2021-07-29T01:58:04,897     writing dependency_links to /tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/dependency_links.txt
2021-07-29T01:58:04,898     writing requirements to /tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/requires.txt
2021-07-29T01:58:04,899     writing top-level names to /tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/top_level.txt
2021-07-29T01:58:04,901     writing manifest file '/tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T01:58:05,061     reading manifest file '/tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T01:58:05,062     reading manifest template 'MANIFEST.in'
2021-07-29T01:58:05,113     writing manifest file '/tmp/pip-pip-egg-info-pdbvabek/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T01:58:05,220   Source in /tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e has version 1.7, which satisfies requirement adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb
2021-07-29T01:58:05,221   Removed adaptivepele==1.7 from https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb from build tracker '/tmp/pip-req-tracker-2w01iyb7'
2021-07-29T01:58:05,225 Created temporary directory: /tmp/pip-unpack-su0g6ym3
2021-07-29T01:58:05,226 Building wheels for collected packages: adaptivepele
2021-07-29T01:58:05,231   Created temporary directory: /tmp/pip-wheel-0siq0b55
2021-07-29T01:58:05,231   Building wheel for adaptivepele (setup.py): started
2021-07-29T01:58:05,232   Destination directory: /tmp/pip-wheel-0siq0b55
2021-07-29T01:58:05,232   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0siq0b55
2021-07-29T01:58:06,362   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-29T01:58:06,499   running bdist_wheel
2021-07-29T01:58:06,504   running build
2021-07-29T01:58:06,504   running build_py
2021-07-29T01:58:06,638   creating build
2021-07-29T01:58:06,638   creating build/lib.linux-armv7l-3.9
2021-07-29T01:58:06,639   creating build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,640   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,642   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,644   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,646   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,648   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:06,651   creating build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,652   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,654   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,656   copying AdaptivePELE/constants/buildEnvironments.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,658   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,660   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T01:58:06,663   creating build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T01:58:06,664   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T01:58:06,666   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T01:58:06,669   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T01:58:06,673   creating build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,674   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,677   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,679   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,682   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,685   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,687   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,689   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,691   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,693   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,695   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,697   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,699   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,701   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,704   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,707   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,709   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,711   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,714   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T01:58:06,718   creating build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T01:58:06,719   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T01:58:06,721   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T01:58:06,724   creating build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,724   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,726   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,730   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,733   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,735   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T01:58:06,738   creating build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,739   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,741   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,743   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,745   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,747   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T01:58:06,753   creating build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,754   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,757   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,758   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,760   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,762   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,765   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,768   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T01:58:06,772   creating build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,773   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,776   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,777   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,779   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,782   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,784   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,787   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,790   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,792   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,794   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T01:58:06,798   creating build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T01:58:06,799   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T01:58:06,801   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T01:58:06,805   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T01:58:06,807   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T01:58:06,816   creating build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,817   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,820   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,822   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,824   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,827   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,828   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,831   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,834   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,836   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,838   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,840   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,842   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,844   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,846   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,848   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,850   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,852   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,855   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,857   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,859   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,862   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,864   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,866   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,869   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,870   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,873   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,876   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,879   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,881   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,884   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,886   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,888   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,890   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,893   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,895   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,898   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,900   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,901   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,904   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,906   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,907   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,910   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,911   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,913   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,916   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,918   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T01:58:06,933   running build_ext
2021-07-29T01:58:06,939   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2021-07-29T01:58:07,573   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/AdaptivePELE/atomset/atomset.pxd
2021-07-29T01:58:07,573     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T01:58:12,218   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-07-29T01:58:12,218   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-07-29T01:58:12,219   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-07-29T01:58:12,220   building 'AdaptivePELE.atomset.atomset' extension
2021-07-29T01:58:12,220   creating build/temp.linux-armv7l-3.9
2021-07-29T01:58:12,221   creating build/temp.linux-armv7l-3.9/AdaptivePELE
2021-07-29T01:58:12,221   creating build/temp.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T01:58:12,222   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o
2021-07-29T01:58:12,650   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T01:58:12,650                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T01:58:12,650                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T01:58:12,650                    from AdaptivePELE/atomset/atomset.c:620:
2021-07-29T01:58:12,651   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T01:58:12,651      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T01:58:12,651         |  ^~~~~~~
2021-07-29T01:58:43,640   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so
2021-07-29T01:58:43,864   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2021-07-29T01:58:43,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2021-07-29T01:58:44,257   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T01:58:44,257                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T01:58:44,257                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T01:58:44,258                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2021-07-29T01:58:44,258   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T01:58:44,258      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T01:58:44,258         |  ^~~~~~~
2021-07-29T01:58:44,494   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c: In function ‘__Pyx_modinit_type_init_code’:
2021-07-29T01:58:44,499   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:10925:95: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-29T01:58:44,500   10925 |   __pyx_type_12AdaptivePELE_7atomset_27SymmetryContactMapEvaluator_SymmetryContactMapEvaluator.tp_print = 0;
2021-07-29T01:58:44,500         |                                                                                               ^
2021-07-29T01:58:44,547   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-29T01:58:44,553   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,553   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,553         |                     ^
2021-07-29T01:58:44,553   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,554                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,554                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,554   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,554     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,554         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,561   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,561   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,561         |                     ^
2021-07-29T01:58:44,561   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,561                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,561                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,561   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-29T01:58:44,562     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-29T01:58:44,562         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,568   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,568   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,568         |                     ^
2021-07-29T01:58:44,568   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,568                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,568                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,569   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,569     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,569         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,575   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,575   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,575         |                     ^
2021-07-29T01:58:44,575   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,576                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,576                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,576   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,576     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,576         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,582   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,582   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,582         |                     ^
2021-07-29T01:58:44,583   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,583                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,583                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,583   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-29T01:58:44,583     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-29T01:58:44,583         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,589   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11414:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,589   11414 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,590         |                     ^
2021-07-29T01:58:44,590   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,590                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,590                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,590   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,590     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,590         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,598   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,598   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,599         |                         ^
2021-07-29T01:58:44,599   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,599                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,599                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,599   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,599     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,599         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,605   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,606   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,606         |                         ^
2021-07-29T01:58:44,606   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,606                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,606                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,606   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-29T01:58:44,606     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-29T01:58:44,607         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,613   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,613   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,613         |                         ^
2021-07-29T01:58:44,613   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,613                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,614                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,614   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,614     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,614         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,620   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,620   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,621         |                         ^
2021-07-29T01:58:44,621   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,621                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,621                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,621   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,621     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,621         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,627   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,628   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,628         |                         ^
2021-07-29T01:58:44,628   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,628                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,628                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,628   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-29T01:58:44,628     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-29T01:58:44,628         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:44,635   AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:11430:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-29T01:58:44,635   11430 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-29T01:58:44,635         |                         ^
2021-07-29T01:58:44,635   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-29T01:58:44,635                    from /usr/include/python3.9/Python.h:97,
2021-07-29T01:58:44,635                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:4:
2021-07-29T01:58:44,636   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-29T01:58:44,636     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-29T01:58:44,636         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-29T01:58:45,139   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-29T01:58:45,403   Building wheel for adaptivepele (setup.py): finished with status 'error'
2021-07-29T01:58:45,403   ERROR: Failed building wheel for adaptivepele
2021-07-29T01:58:45,404   Running setup.py clean for adaptivepele
2021-07-29T01:58:45,404   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dbszemkx/adaptivepele_aef5ce62233f45c49b9804a430eaab5e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-29T01:58:46,552   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-29T01:58:46,664   running clean
2021-07-29T01:58:46,666   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-29T01:58:46,670   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-29T01:58:46,715   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-29T01:58:46,716   'build/scripts-3.9' does not exist -- can't clean it
2021-07-29T01:58:46,716   removing 'build'
2021-07-29T01:58:46,815 Failed to build adaptivepele
2021-07-29T01:58:46,816 ERROR: Failed to build one or more wheels
2021-07-29T01:58:46,817 Exception information:
2021-07-29T01:58:46,817 Traceback (most recent call last):
2021-07-29T01:58:46,817   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-29T01:58:46,817     status = self.run(options, args)
2021-07-29T01:58:46,817   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-29T01:58:46,817     return func(self, options, args)
2021-07-29T01:58:46,817   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-29T01:58:46,817     raise CommandError(
2021-07-29T01:58:46,817 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-29T01:58:46,820 Removed build tracker: '/tmp/pip-req-tracker-2w01iyb7'