2021-07-29T02:02:15,236 Created temporary directory: /tmp/pip-ephem-wheel-cache-mc43jkf2 2021-07-29T02:02:15,239 Created temporary directory: /tmp/pip-req-tracker-wlx_5ynh 2021-07-29T02:02:15,240 Initialized build tracking at /tmp/pip-req-tracker-wlx_5ynh 2021-07-29T02:02:15,240 Created build tracker: /tmp/pip-req-tracker-wlx_5ynh 2021-07-29T02:02:15,240 Entered build tracker: /tmp/pip-req-tracker-wlx_5ynh 2021-07-29T02:02:15,241 Created temporary directory: /tmp/pip-wheel-ghrzw8y3 2021-07-29T02:02:15,272 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T02:02:15,272 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T02:02:15,273 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T02:02:15,273 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T02:02:15,273 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T02:02:15,276 WARNING: Location '/py-cortex-api/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T02:02:15,277 WARNING: Location 't/py-cortex-api/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T02:02:15,277 WARNING: Location 'm/py-cortex-api/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T02:02:15,277 WARNING: Location 'p/py-cortex-api/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T02:02:15,277 1 location(s) to search for versions of py-cortex-api: 2021-07-29T02:02:15,277 * https://pypi.org/simple/py-cortex-api/ 2021-07-29T02:02:15,278 Fetching project page and analyzing links: https://pypi.org/simple/py-cortex-api/ 2021-07-29T02:02:15,278 Getting page https://pypi.org/simple/py-cortex-api/ 2021-07-29T02:02:15,280 Found index url https://pypi.org/simple 2021-07-29T02:02:15,375 Found link https://files.pythonhosted.org/packages/10/9a/15dd2926e462ede2596498e7fdaff6177f47a0a3e0e7d55809a295c7c2e0/py-cortex-api-1.0.tar.gz#sha256=9bf62eb4e0ac6862644c7b7842a3e381a5b72474331ce885c612ac2302c69bfa (from https://pypi.org/simple/py-cortex-api/), version: 1.0 2021-07-29T02:02:15,375 Found link https://files.pythonhosted.org/packages/4f/9b/5df6d4526ebcc12ee6d6a932150243ea6d74e7749b813b898504c51e8fd4/py-cortex-api-2.0.0.tar.gz#sha256=050f4f91430ad306a67334e83571b08dcd0826e32c6b76243471e4598e64277b (from https://pypi.org/simple/py-cortex-api/), version: 2.0.0 2021-07-29T02:02:15,376 Found link https://files.pythonhosted.org/packages/0f/73/39f8d4af8a1819908811755effc9ef16e8a650360e4d9a97aa9f57a24010/py-cortex-api-2.1.0.tar.gz#sha256=8ccc15baf69b10614b917c557a62e6badf3e765da07c80b5fcf5306e6351ddd9 (from https://pypi.org/simple/py-cortex-api/), version: 2.1.0 2021-07-29T02:02:15,376 Found link https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz#sha256=390c8678419572d82656c07f0eb3e44ee2b862ae775ab514ef6dd2677de0fd8c (from https://pypi.org/simple/py-cortex-api/), version: 2.2.0 2021-07-29T02:02:15,376 Skipping link: not a file: https://pypi.org/simple/py-cortex-api/ 2021-07-29T02:02:15,394 Given no hashes to check 1 links for project 'py-cortex-api': discarding no candidates 2021-07-29T02:02:15,412 Collecting py-cortex-api==2.2.0 2021-07-29T02:02:15,414 Created temporary directory: /tmp/pip-unpack-r_nlaw57 2021-07-29T02:02:15,610 Downloading py-cortex-api-2.2.0.tar.gz (16 kB) 2021-07-29T02:02:15,683 Added py-cortex-api==2.2.0 from https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz#sha256=390c8678419572d82656c07f0eb3e44ee2b862ae775ab514ef6dd2677de0fd8c to build tracker '/tmp/pip-req-tracker-wlx_5ynh' 2021-07-29T02:02:15,685 Running setup.py (path:/tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0/setup.py) egg_info for package py-cortex-api 2021-07-29T02:02:15,686 Created temporary directory: /tmp/pip-pip-egg-info-rblmu6ca 2021-07-29T02:02:15,686 Running command python setup.py egg_info 2021-07-29T02:02:17,801 running egg_info 2021-07-29T02:02:17,804 creating /tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info 2021-07-29T02:02:17,805 writing /tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/PKG-INFO 2021-07-29T02:02:17,808 writing dependency_links to /tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/dependency_links.txt 2021-07-29T02:02:17,810 writing requirements to /tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/requires.txt 2021-07-29T02:02:17,811 writing top-level names to /tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/top_level.txt 2021-07-29T02:02:17,814 writing manifest file '/tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/SOURCES.txt' 2021-07-29T02:02:17,820 reading manifest file '/tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/SOURCES.txt' 2021-07-29T02:02:17,822 reading manifest template 'MANIFEST.in' 2021-07-29T02:02:17,826 warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c1' 2021-07-29T02:02:17,826 warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c2' 2021-07-29T02:02:17,827 warning: no previously-included files matching '*~' found anywhere in distribution 2021-07-29T02:02:17,828 warning: no previously-included files matching '*.swp' found anywhere in distribution 2021-07-29T02:02:17,830 writing manifest file '/tmp/pip-pip-egg-info-rblmu6ca/py_cortex_api.egg-info/SOURCES.txt' 2021-07-29T02:02:17,900 Source in /tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0 has version 2.2.0, which satisfies requirement py-cortex-api==2.2.0 from https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz#sha256=390c8678419572d82656c07f0eb3e44ee2b862ae775ab514ef6dd2677de0fd8c 2021-07-29T02:02:17,901 Removed py-cortex-api==2.2.0 from https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz#sha256=390c8678419572d82656c07f0eb3e44ee2b862ae775ab514ef6dd2677de0fd8c from build tracker '/tmp/pip-req-tracker-wlx_5ynh' 2021-07-29T02:02:17,905 Created temporary directory: /tmp/pip-unpack-dwb_kq49 2021-07-29T02:02:17,906 Building wheels for collected packages: py-cortex-api 2021-07-29T02:02:17,910 Created temporary directory: /tmp/pip-wheel-6yg__4ge 2021-07-29T02:02:17,910 Building wheel for py-cortex-api (setup.py): started 2021-07-29T02:02:17,911 Destination directory: /tmp/pip-wheel-6yg__4ge 2021-07-29T02:02:17,911 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6yg__4ge 2021-07-29T02:02:20,380 running bdist_wheel 2021-07-29T02:02:20,602 running build 2021-07-29T02:02:20,602 running build_py 2021-07-29T02:02:20,603 START: Building backend dependencies 2021-07-29T02:05:52,830 Cloning into 'minimap2'... 2021-07-29T02:05:52,831 fatal: transport 'https' not allowed 2021-07-29T02:05:52,831 ./cortex/ext/install_dependencies.sh: line 15: cd: minimap2_dir: No such file or directory 2021-07-29T02:05:52,831 mv: cannot stat 'minimap2_dir/minimap2': No such file or directory 2021-07-29T02:05:52,831 --2021-07-29 02:02:20-- https://github.com/vcftools/vcftools/releases/download/v0.1.15/vcftools-0.1.15.tar.gz 2021-07-29T02:05:52,832 Resolving github.com (github.com)... 64:ff9b::8c52:7903, 140.82.121.3 2021-07-29T02:05:52,832 Connecting to github.com (github.com)|64:ff9b::8c52:7903|:443... connected. 2021-07-29T02:05:52,832 HTTP request sent, awaiting response... 302 Found 2021-07-29T02:05:52,832 Location: https://github-releases.githubusercontent.com/38052058/2e0f4764-22d4-11e7-8512-08df6111866d?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210729%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210729T020221Z&X-Amz-Expires=300&X-Amz-Signature=7a42964fe770673df061106093669b974b4af744713829a197d399c3955ec816&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=38052058&response-content-disposition=attachment%3B%20filename%3Dvcftools-0.1.15.tar.gz&response-content-type=application%2Foctet-stream [following] 2021-07-29T02:05:52,832 --2021-07-29 02:02:21-- https://github-releases.githubusercontent.com/38052058/2e0f4764-22d4-11e7-8512-08df6111866d?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20210729%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210729T020221Z&X-Amz-Expires=300&X-Amz-Signature=7a42964fe770673df061106093669b974b4af744713829a197d399c3955ec816&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=38052058&response-content-disposition=attachment%3B%20filename%3Dvcftools-0.1.15.tar.gz&response-content-type=application%2Foctet-stream 2021-07-29T02:05:52,833 Resolving github-releases.githubusercontent.com (github-releases.githubusercontent.com)... 64:ff9b::b9c7:6e9a, 64:ff9b::b9c7:6f9a, 64:ff9b::b9c7:6c9a, ... 2021-07-29T02:05:52,833 Connecting to github-releases.githubusercontent.com (github-releases.githubusercontent.com)|64:ff9b::b9c7:6e9a|:443... connected. 2021-07-29T02:05:52,833 HTTP request sent, awaiting response... 200 OK 2021-07-29T02:05:52,833 Length: 481398 (470K) [application/octet-stream] 2021-07-29T02:05:52,833 Saving to: ‘vcftools-0.1.15.tar.gz’ 2021-07-29T02:05:52,834 0K .......... .......... .......... .......... .......... 10% 2.88M 0s 2021-07-29T02:05:52,834 50K .......... .......... .......... .......... .......... 21% 865K 0s 2021-07-29T02:05:52,834 100K .......... .......... .......... .......... .......... 31% 2.83M 0s 2021-07-29T02:05:52,834 150K .......... .......... .......... .......... .......... 42% 4.48M 0s 2021-07-29T02:05:52,834 200K .......... .......... .......... .......... .......... 53% 4.98M 0s 2021-07-29T02:05:52,834 250K .......... .......... .......... .......... .......... 63% 1.31M 0s 2021-07-29T02:05:52,835 300K .......... .......... .......... .......... .......... 74% 6.24M 0s 2021-07-29T02:05:52,835 350K .......... .......... .......... .......... .......... 85% 7.93M 0s 2021-07-29T02:05:52,835 400K .......... .......... .......... .......... .......... 95% 5.83M 0s 2021-07-29T02:05:52,835 450K .......... .......... 100% 39.5M=0.2s 2021-07-29T02:05:52,835 2021-07-29 02:02:21 (2.66 MB/s) - ‘vcftools-0.1.15.tar.gz’ saved [481398/481398] 2021-07-29T02:05:52,836 In file included from /usr/include/c++/10/vector:72, 2021-07-29T02:05:52,836 from entry.h:12, 2021-07-29T02:05:52,836 from bcf_entry.h:10, 2021-07-29T02:05:52,836 from bcf_entry_setters.cpp:9: 2021-07-29T02:05:52,836 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-29T02:05:52,836 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T02:05:52,837 509 | vector<_Tp, _Alloc>:: 2021-07-29T02:05:52,837 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,837 In file included from /usr/include/c++/10/vector:67, 2021-07-29T02:05:52,837 from entry.h:12, 2021-07-29T02:05:52,837 from bcf_entry.h:10, 2021-07-29T02:05:52,838 from bcf_entry_setters.cpp:9: 2021-07-29T02:05:52,838 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const float&)’: 2021-07-29T02:05:52,838 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T02:05:52,838 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T02:05:52,839 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,839 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const std::vector&)’: 2021-07-29T02:05:52,839 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T02:05:52,840 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T02:05:52,840 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,840 In file included from /usr/include/c++/10/vector:72, 2021-07-29T02:05:52,841 from variant_file.h:35, 2021-07-29T02:05:52,841 from variant_file_output.cpp:8: 2021-07-29T02:05:52,841 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-29T02:05:52,841 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-29T02:05:52,842 509 | vector<_Tp, _Alloc>:: 2021-07-29T02:05:52,842 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,842 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-29T02:05:52,843 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-29T02:05:52,843 426 | vector<_Tp, _Alloc>:: 2021-07-29T02:05:52,843 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,843 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: 2021-07-29T02:05:52,844 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-29T02:05:52,844 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T02:05:52,844 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,845 In file included from /usr/include/c++/10/set:60, 2021-07-29T02:05:52,845 from variant_file.h:26, 2021-07-29T02:05:52,845 from variant_file_output.cpp:8: 2021-07-29T02:05:52,845 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: 2021-07-29T02:05:52,846 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2021-07-29T02:05:52,846 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T02:05:52,846 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,847 In file included from /usr/include/c++/10/map:61, 2021-07-29T02:05:52,847 from variant_file.h:28, 2021-07-29T02:05:52,847 from variant_file_output.cpp:8: 2021-07-29T02:05:52,848 /usr/include/c++/10/bits/stl_map.h: In member function ‘void variant_file::output_TsTv_by_quality(const parameters&)’: 2021-07-29T02:05:52,848 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2021-07-29T02:05:52,848 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T02:05:52,849 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,849 502 | std::tuple(__k), 2021-07-29T02:05:52,849 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,849 503 | std::tuple<>()); 2021-07-29T02:05:52,850 | ~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,850 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2021-07-29T02:05:52,850 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T02:05:52,850 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,851 502 | std::tuple(__k), 2021-07-29T02:05:52,851 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,851 503 | std::tuple<>()); 2021-07-29T02:05:52,851 | ~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,851 In file included from /usr/include/c++/10/vector:67, 2021-07-29T02:05:52,852 from variant_file.h:35, 2021-07-29T02:05:52,852 from variant_file_output.cpp:8: 2021-07-29T02:05:52,852 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void variant_file::output_Tajima_D(const parameters&)’: 2021-07-29T02:05:52,852 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2021-07-29T02:05:52,853 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T02:05:52,853 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,853 In file included from /usr/include/c++/10/vector:72, 2021-07-29T02:05:52,853 from entry.h:12, 2021-07-29T02:05:52,853 from vcf_entry.h:12, 2021-07-29T02:05:52,854 from vcf_entry_setters.cpp:9: 2021-07-29T02:05:52,854 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-29T02:05:52,854 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T02:05:52,854 509 | vector<_Tp, _Alloc>:: 2021-07-29T02:05:52,855 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,855 In file included from /usr/include/c++/10/vector:67, 2021-07-29T02:05:52,855 from entry.h:12, 2021-07-29T02:05:52,855 from vcf_entry.h:12, 2021-07-29T02:05:52,856 from vcf_entry_setters.cpp:9: 2021-07-29T02:05:52,856 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void vcf_entry::set_indv_GQUALITY(unsigned int, double)’: 2021-07-29T02:05:52,856 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T02:05:52,856 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T02:05:52,857 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T02:05:52,857 Cloning into 'cortex'... 2021-07-29T02:05:52,857 fatal: transport 'https' not allowed 2021-07-29T02:05:52,857 ERROR: backend compilation failed 128 2021-07-29T02:05:52,924 Building wheel for py-cortex-api (setup.py): finished with status 'error' 2021-07-29T02:05:52,925 ERROR: Failed building wheel for py-cortex-api 2021-07-29T02:05:52,926 Running setup.py clean for py-cortex-api 2021-07-29T02:05:52,926 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ghrzw8y3/py-cortex-api_00c8ffaffdc542bda9d4ca997f340fd0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-29T02:05:54,034 running clean 2021-07-29T02:05:54,036 'build/lib' does not exist -- can't clean it 2021-07-29T02:05:54,037 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-29T02:05:54,037 'build/scripts-3.9' does not exist -- can't clean it 2021-07-29T02:05:54,104 Failed to build py-cortex-api 2021-07-29T02:05:54,104 ERROR: Failed to build one or more wheels 2021-07-29T02:05:54,105 Exception information: 2021-07-29T02:05:54,105 Traceback (most recent call last): 2021-07-29T02:05:54,105 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-29T02:05:54,105 status = self.run(options, args) 2021-07-29T02:05:54,105 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-29T02:05:54,105 return func(self, options, args) 2021-07-29T02:05:54,105 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-29T02:05:54,105 raise CommandError( 2021-07-29T02:05:54,105 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-29T02:05:54,108 Removed build tracker: '/tmp/pip-req-tracker-wlx_5ynh'