2021-07-29T03:14:58,265 Created temporary directory: /tmp/pip-ephem-wheel-cache-7v2xaw5p 2021-07-29T03:14:58,269 Created temporary directory: /tmp/pip-req-tracker-ls98mb_g 2021-07-29T03:14:58,270 Initialized build tracking at /tmp/pip-req-tracker-ls98mb_g 2021-07-29T03:14:58,270 Created build tracker: /tmp/pip-req-tracker-ls98mb_g 2021-07-29T03:14:58,270 Entered build tracker: /tmp/pip-req-tracker-ls98mb_g 2021-07-29T03:14:58,271 Created temporary directory: /tmp/pip-wheel-k6o89zt3 2021-07-29T03:14:58,307 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T03:14:58,308 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T03:14:58,308 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T03:14:58,308 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T03:14:58,308 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T03:14:58,311 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-29T03:14:58,480 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-29T03:14:58,480 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-29T03:14:58,480 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-29T03:14:58,481 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-29T03:14:58,481 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-29T03:14:58,481 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-29T03:14:58,481 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-29T03:14:58,482 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-29T03:14:58,482 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-29T03:14:58,482 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-29T03:14:58,483 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-29T03:14:58,483 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-29T03:14:58,483 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-29T03:14:58,483 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-29T03:14:58,484 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-29T03:14:58,484 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-29T03:14:58,484 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-29T03:14:58,484 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-29T03:14:58,510 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-29T03:14:58,528 Collecting jcvi==1.1.8 2021-07-29T03:14:58,529 Created temporary directory: /tmp/pip-unpack-7hsq_z5i 2021-07-29T03:14:59,025 Downloading jcvi-1.1.8.tar.gz (819 kB) 2021-07-29T03:14:59,995 Added jcvi==1.1.8 from https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 to build tracker '/tmp/pip-req-tracker-ls98mb_g' 2021-07-29T03:14:59,996 Running setup.py (path:/tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f/setup.py) egg_info for package jcvi 2021-07-29T03:14:59,997 Created temporary directory: /tmp/pip-pip-egg-info-x529iw3k 2021-07-29T03:14:59,997 Running command python setup.py egg_info 2021-07-29T03:15:01,603 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.8' to '1.1.8' 2021-07-29T03:15:01,604 warnings.warn(tmpl.format(**locals())) 2021-07-29T03:15:01,655 running egg_info 2021-07-29T03:15:01,657 creating /tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info 2021-07-29T03:15:01,658 writing /tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/PKG-INFO 2021-07-29T03:15:01,662 writing dependency_links to /tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/dependency_links.txt 2021-07-29T03:15:01,664 writing requirements to /tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/requires.txt 2021-07-29T03:15:01,665 writing top-level names to /tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/top_level.txt 2021-07-29T03:15:01,667 writing manifest file '/tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/SOURCES.txt' 2021-07-29T03:15:01,695 reading manifest file '/tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/SOURCES.txt' 2021-07-29T03:15:01,697 reading manifest template 'MANIFEST.in' 2021-07-29T03:15:01,701 adding license file 'LICENSE' 2021-07-29T03:15:01,710 writing manifest file '/tmp/pip-pip-egg-info-x529iw3k/jcvi.egg-info/SOURCES.txt' 2021-07-29T03:15:01,809 Source in /tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f has version 1.1.8, which satisfies requirement jcvi==1.1.8 from https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 2021-07-29T03:15:01,810 Removed jcvi==1.1.8 from https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 from build tracker '/tmp/pip-req-tracker-ls98mb_g' 2021-07-29T03:15:01,814 Created temporary directory: /tmp/pip-unpack-nwy4p6_1 2021-07-29T03:15:01,815 Building wheels for collected packages: jcvi 2021-07-29T03:15:01,819 Created temporary directory: /tmp/pip-wheel-jwam0mri 2021-07-29T03:15:01,820 Building wheel for jcvi (setup.py): started 2021-07-29T03:15:01,820 Destination directory: /tmp/pip-wheel-jwam0mri 2021-07-29T03:15:01,820 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jwam0mri 2021-07-29T03:15:03,221 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.8' to '1.1.8' 2021-07-29T03:15:03,222 warnings.warn(tmpl.format(**locals())) 2021-07-29T03:15:03,288 running bdist_wheel 2021-07-29T03:15:03,292 running build 2021-07-29T03:15:03,292 running build_py 2021-07-29T03:15:03,297 creating build 2021-07-29T03:15:03,298 creating build/lib.linux-armv7l-3.9 2021-07-29T03:15:03,302 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-29T03:15:03,304 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T03:15:03,305 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T03:15:03,308 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,309 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,311 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,315 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,318 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,320 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,322 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,324 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,327 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,330 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,332 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T03:15:03,335 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,336 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,340 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,342 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,344 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,347 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,350 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,353 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,355 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,358 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,361 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,364 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,366 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,368 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,371 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,374 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,376 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,378 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,381 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,384 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,386 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,388 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,391 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,396 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T03:15:03,399 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,400 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,403 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,405 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,408 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,411 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,414 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,416 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,421 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,423 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,426 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,429 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T03:15:03,433 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,434 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,436 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,440 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,444 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,448 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,456 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,503 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,507 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,511 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,515 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,520 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,523 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,526 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,529 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,531 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,535 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,538 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,540 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,543 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,547 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,550 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,552 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,555 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,557 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,559 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,561 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,564 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,568 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,569 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,571 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,574 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,576 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,579 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,582 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,585 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,588 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,593 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,603 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,606 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,608 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T03:15:03,612 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,613 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,615 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,618 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,621 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,625 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,628 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,631 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,634 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,637 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,641 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,644 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,648 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,651 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,653 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,656 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,659 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,662 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T03:15:03,665 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,666 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,670 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,672 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,675 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,678 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,680 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,682 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,685 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,688 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,690 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,693 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,696 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T03:15:03,699 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,700 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,703 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,707 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,709 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,712 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,717 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,719 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,721 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,725 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,727 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,730 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,732 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,735 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,738 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,740 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,743 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,746 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,748 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,750 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,753 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,756 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,758 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,763 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,766 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,768 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,771 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T03:15:03,773 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,774 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,777 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,779 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,782 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,785 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,787 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,790 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,792 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,796 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,798 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,801 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,803 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,805 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T03:15:03,809 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,810 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,812 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,814 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,818 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,820 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,823 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,825 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,828 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,832 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,835 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,838 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,841 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,844 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,847 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,849 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,851 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,854 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,859 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,862 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,864 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,867 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,869 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,872 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,874 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,878 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,881 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,885 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,887 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,890 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,894 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,896 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:03,897 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:03,899 running egg_info 2021-07-29T03:15:03,931 writing jcvi.egg-info/PKG-INFO 2021-07-29T03:15:03,933 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-29T03:15:03,936 writing requirements to jcvi.egg-info/requires.txt 2021-07-29T03:15:03,937 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-29T03:15:03,956 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T03:15:03,963 reading manifest template 'MANIFEST.in' 2021-07-29T03:15:03,967 adding license file 'LICENSE' 2021-07-29T03:15:03,979 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T03:15:03,986 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:03,988 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:03,991 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:03,994 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:03,999 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,003 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,006 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,010 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,013 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,015 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,019 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,021 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,026 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,029 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T03:15:04,046 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-29T03:15:04,048 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.8' 2021-07-29T03:15:04,048 running build_ext 2021-07-29T03:15:04,116 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-29T03:15:04,725 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f/jcvi/assembly/chic.pyx 2021-07-29T03:15:04,725 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T03:15:07,599 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-29T03:15:07,605 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-k6o89zt3/jcvi_b216f074f96944199f18f8b171ba476f/jcvi/formats/cblast.pyx 2021-07-29T03:15:07,605 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T03:15:08,550 building 'jcvi.assembly.chic' extension 2021-07-29T03:15:08,551 creating build/temp.linux-armv7l-3.9 2021-07-29T03:15:08,551 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-29T03:15:08,552 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-29T03:15:08,553 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-29T03:15:08,991 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-29T03:15:08,991 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-29T03:15:08,992 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-29T03:15:08,992 from jcvi/assembly/chic.c:620: 2021-07-29T03:15:08,992 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-29T03:15:08,992 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-29T03:15:08,992 | ^~~~~~~ 2021-07-29T03:15:12,719 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-29T03:15:12,851 building 'jcvi.formats.cblast' extension 2021-07-29T03:15:12,852 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-29T03:15:12,852 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-29T03:15:22,301 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-29T03:15:22,463 installing to build/bdist.linux-armv7l/wheel 2021-07-29T03:15:22,463 running install 2021-07-29T03:15:22,465 running install_lib 2021-07-29T03:15:22,469 creating build/bdist.linux-armv7l 2021-07-29T03:15:22,470 creating build/bdist.linux-armv7l/wheel 2021-07-29T03:15:22,472 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T03:15:22,473 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,475 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,477 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,480 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,483 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,485 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,487 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,489 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,492 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,495 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,497 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T03:15:22,500 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,501 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,504 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,506 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,508 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,511 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,516 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,519 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,522 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,525 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,528 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,531 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,534 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,543 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,546 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,550 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,553 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,555 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,558 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,561 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,564 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,567 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,570 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,573 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T03:15:22,575 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,576 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,579 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,582 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,585 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,588 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,591 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,593 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,597 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,600 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,603 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,605 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T03:15:22,608 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,609 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,612 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,614 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,616 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,619 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,621 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,625 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,629 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,632 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,634 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,637 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,641 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,651 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,653 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,656 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,659 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,661 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,664 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,667 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,670 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,672 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,676 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,679 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,682 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,685 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,687 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,689 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,691 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,695 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T03:15:22,698 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,699 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,701 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,703 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,706 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,709 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,712 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,714 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,717 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,720 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,724 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,727 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,729 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T03:15:22,732 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,733 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,735 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,737 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,740 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,745 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,748 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,751 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,754 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,757 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,760 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,763 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,766 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,769 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,771 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,775 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,778 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,781 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T03:15:22,784 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,785 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,789 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,791 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,794 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,800 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,817 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,831 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,842 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,851 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,857 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,866 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,878 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T03:15:22,895 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,900 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,906 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,911 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,915 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,927 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,947 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,954 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,962 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,971 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,980 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,991 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:22,999 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,002 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,006 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,008 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,012 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,015 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,018 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,020 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,023 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,025 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,027 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,031 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,033 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,036 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,038 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T03:15:23,040 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,041 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,044 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,046 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,049 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,051 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,054 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,056 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,059 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,063 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,064 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,068 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,071 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,074 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,077 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,079 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,081 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,084 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,087 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,093 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,096 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,098 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,102 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T03:15:23,104 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,107 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,109 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,112 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,115 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T03:15:23,118 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,119 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,122 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,124 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,128 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,132 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,153 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,155 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,157 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,160 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,164 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,166 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,169 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,172 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,175 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,178 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,180 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,182 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,185 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,187 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,193 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,195 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,198 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,200 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,203 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,206 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,209 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,215 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,218 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,224 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,226 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,229 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,233 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T03:15:23,234 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T03:15:23,237 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T03:15:23,239 running install_egg_info 2021-07-29T03:15:23,248 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.8-py3.9.egg-info 2021-07-29T03:15:23,264 running install_scripts 2021-07-29T03:15:23,331 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T03:15:23,336 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.8.dist-info/WHEEL 2021-07-29T03:15:23,339 creating '/tmp/pip-wheel-jwam0mri/jcvi-1.1.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T03:15:23,342 adding 'jcvi/__init__.py' 2021-07-29T03:15:23,343 adding 'jcvi/_version.py' 2021-07-29T03:15:23,345 adding 'jcvi/algorithms/__init__.py' 2021-07-29T03:15:23,346 adding 'jcvi/algorithms/__main__.py' 2021-07-29T03:15:23,348 adding 'jcvi/algorithms/ec.py' 2021-07-29T03:15:23,350 adding 'jcvi/algorithms/formula.py' 2021-07-29T03:15:23,353 adding 'jcvi/algorithms/graph.py' 2021-07-29T03:15:23,354 adding 'jcvi/algorithms/lis.py' 2021-07-29T03:15:23,358 adding 'jcvi/algorithms/lpsolve.py' 2021-07-29T03:15:23,360 adding 'jcvi/algorithms/matrix.py' 2021-07-29T03:15:23,361 adding 'jcvi/algorithms/maxsum.py' 2021-07-29T03:15:23,363 adding 'jcvi/algorithms/ml.py' 2021-07-29T03:15:23,364 adding 'jcvi/algorithms/supermap.py' 2021-07-29T03:15:23,366 adding 'jcvi/algorithms/tsp.py' 2021-07-29T03:15:23,368 adding 'jcvi/annotation/__init__.py' 2021-07-29T03:15:23,369 adding 'jcvi/annotation/__main__.py' 2021-07-29T03:15:23,373 adding 'jcvi/annotation/ahrd.py' 2021-07-29T03:15:23,375 adding 'jcvi/annotation/automaton.py' 2021-07-29T03:15:23,377 adding 'jcvi/annotation/depth.py' 2021-07-29T03:15:23,379 adding 'jcvi/annotation/evm.py' 2021-07-29T03:15:23,381 adding 'jcvi/annotation/maker.py' 2021-07-29T03:15:23,384 adding 'jcvi/annotation/pasa.py' 2021-07-29T03:15:23,386 adding 'jcvi/annotation/qc.py' 2021-07-29T03:15:23,393 adding 'jcvi/annotation/reformat.py' 2021-07-29T03:15:23,395 adding 'jcvi/annotation/stats.py' 2021-07-29T03:15:23,397 adding 'jcvi/annotation/train.py' 2021-07-29T03:15:23,399 adding 'jcvi/apps/__init__.py' 2021-07-29T03:15:23,401 adding 'jcvi/apps/__main__.py' 2021-07-29T03:15:23,403 adding 'jcvi/apps/align.py' 2021-07-29T03:15:23,413 adding 'jcvi/apps/base.py' 2021-07-29T03:15:23,415 adding 'jcvi/apps/biomart.py' 2021-07-29T03:15:23,417 adding 'jcvi/apps/blastplus.py' 2021-07-29T03:15:23,418 adding 'jcvi/apps/bowtie.py' 2021-07-29T03:15:23,420 adding 'jcvi/apps/bwa.py' 2021-07-29T03:15:23,422 adding 'jcvi/apps/cap3.py' 2021-07-29T03:15:23,423 adding 'jcvi/apps/cdhit.py' 2021-07-29T03:15:23,425 adding 'jcvi/apps/emboss.py' 2021-07-29T03:15:23,428 adding 'jcvi/apps/fetch.py' 2021-07-29T03:15:23,431 adding 'jcvi/apps/gbsubmit.py' 2021-07-29T03:15:23,433 adding 'jcvi/apps/gmap.py' 2021-07-29T03:15:23,435 adding 'jcvi/apps/grid.py' 2021-07-29T03:15:23,440 adding 'jcvi/apps/ks.py' 2021-07-29T03:15:23,442 adding 'jcvi/apps/lastz.py' 2021-07-29T03:15:23,444 adding 'jcvi/apps/mask.py' 2021-07-29T03:15:23,449 adding 'jcvi/apps/phylo.py' 2021-07-29T03:15:23,450 adding 'jcvi/apps/r.py' 2021-07-29T03:15:23,452 adding 'jcvi/apps/restriction.py' 2021-07-29T03:15:23,453 adding 'jcvi/apps/script.py' 2021-07-29T03:15:23,454 adding 'jcvi/apps/softlink.py' 2021-07-29T03:15:23,459 adding 'jcvi/apps/uclust.py' 2021-07-29T03:15:23,461 adding 'jcvi/apps/uniprot.py' 2021-07-29T03:15:23,462 adding 'jcvi/apps/vecscreen.py' 2021-07-29T03:15:23,465 adding 'jcvi/assembly/__init__.py' 2021-07-29T03:15:23,466 adding 'jcvi/assembly/__main__.py' 2021-07-29T03:15:23,475 adding 'jcvi/assembly/allmaps.py' 2021-07-29T03:15:23,478 adding 'jcvi/assembly/allpaths.py' 2021-07-29T03:15:23,480 adding 'jcvi/assembly/amos.py' 2021-07-29T03:15:23,482 adding 'jcvi/assembly/automaton.py' 2021-07-29T03:15:23,484 adding 'jcvi/assembly/bambus.py' 2021-07-29T03:15:23,486 adding 'jcvi/assembly/base.py' 2021-07-29T03:15:23,490 adding 'jcvi/assembly/ca.py' 2021-07-29T03:15:23,538 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T03:15:23,541 adding 'jcvi/assembly/chic.pyx' 2021-07-29T03:15:23,542 adding 'jcvi/assembly/coverage.py' 2021-07-29T03:15:23,544 adding 'jcvi/assembly/gaps.py' 2021-07-29T03:15:23,547 adding 'jcvi/assembly/geneticmap.py' 2021-07-29T03:15:23,552 adding 'jcvi/assembly/goldenpath.py' 2021-07-29T03:15:23,561 adding 'jcvi/assembly/hic.py' 2021-07-29T03:15:23,566 adding 'jcvi/assembly/kmer.py' 2021-07-29T03:15:23,568 adding 'jcvi/assembly/meraculous.py' 2021-07-29T03:15:23,570 adding 'jcvi/assembly/opticalmap.py' 2021-07-29T03:15:23,574 adding 'jcvi/assembly/patch.py' 2021-07-29T03:15:23,576 adding 'jcvi/assembly/pbjelly.py' 2021-07-29T03:15:23,579 adding 'jcvi/assembly/postprocess.py' 2021-07-29T03:15:23,582 adding 'jcvi/assembly/preprocess.py' 2021-07-29T03:15:23,584 adding 'jcvi/assembly/sim.py' 2021-07-29T03:15:23,585 adding 'jcvi/assembly/soap.py' 2021-07-29T03:15:23,587 adding 'jcvi/assembly/sspace.py' 2021-07-29T03:15:23,590 adding 'jcvi/assembly/syntenypath.py' 2021-07-29T03:15:23,591 adding 'jcvi/assembly/trinity.py' 2021-07-29T03:15:23,593 adding 'jcvi/assembly/unitig.py' 2021-07-29T03:15:23,595 adding 'jcvi/compara/__init__.py' 2021-07-29T03:15:23,596 adding 'jcvi/compara/__main__.py' 2021-07-29T03:15:23,598 adding 'jcvi/compara/blastfilter.py' 2021-07-29T03:15:23,602 adding 'jcvi/compara/catalog.py' 2021-07-29T03:15:23,606 adding 'jcvi/compara/fractionation.py' 2021-07-29T03:15:23,608 adding 'jcvi/compara/pad.py' 2021-07-29T03:15:23,610 adding 'jcvi/compara/phylogeny.py' 2021-07-29T03:15:23,612 adding 'jcvi/compara/quota.py' 2021-07-29T03:15:23,614 adding 'jcvi/compara/reconstruct.py' 2021-07-29T03:15:23,616 adding 'jcvi/compara/synfind.py' 2021-07-29T03:15:23,625 adding 'jcvi/compara/synteny.py' 2021-07-29T03:15:23,628 adding 'jcvi/formats/__init__.py' 2021-07-29T03:15:23,629 adding 'jcvi/formats/__main__.py' 2021-07-29T03:15:23,630 adding 'jcvi/formats/ace.py' 2021-07-29T03:15:23,638 adding 'jcvi/formats/agp.py' 2021-07-29T03:15:23,643 adding 'jcvi/formats/base.py' 2021-07-29T03:15:23,654 adding 'jcvi/formats/bed.py' 2021-07-29T03:15:23,659 adding 'jcvi/formats/blast.py' 2021-07-29T03:15:23,662 adding 'jcvi/formats/btab.py' 2021-07-29T03:15:23,800 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T03:15:23,808 adding 'jcvi/formats/cblast.pyx' 2021-07-29T03:15:23,809 adding 'jcvi/formats/cdt.py' 2021-07-29T03:15:23,811 adding 'jcvi/formats/chain.py' 2021-07-29T03:15:23,812 adding 'jcvi/formats/contig.py' 2021-07-29T03:15:23,815 adding 'jcvi/formats/coords.py' 2021-07-29T03:15:23,816 adding 'jcvi/formats/excel.py' 2021-07-29T03:15:23,827 adding 'jcvi/formats/fasta.py' 2021-07-29T03:15:23,832 adding 'jcvi/formats/fastq.py' 2021-07-29T03:15:23,833 adding 'jcvi/formats/fpc.py' 2021-07-29T03:15:23,835 adding 'jcvi/formats/genbank.py' 2021-07-29T03:15:23,850 adding 'jcvi/formats/gff.py' 2021-07-29T03:15:23,853 adding 'jcvi/formats/html.py' 2021-07-29T03:15:23,854 adding 'jcvi/formats/maf.py' 2021-07-29T03:15:23,855 adding 'jcvi/formats/obo.py' 2021-07-29T03:15:23,857 adding 'jcvi/formats/paf.py' 2021-07-29T03:15:23,858 adding 'jcvi/formats/pdf.py' 2021-07-29T03:15:23,860 adding 'jcvi/formats/posmap.py' 2021-07-29T03:15:23,862 adding 'jcvi/formats/psl.py' 2021-07-29T03:15:23,864 adding 'jcvi/formats/pyblast.py' 2021-07-29T03:15:23,869 adding 'jcvi/formats/sam.py' 2021-07-29T03:15:23,871 adding 'jcvi/formats/sbt.py' 2021-07-29T03:15:23,873 adding 'jcvi/formats/sizes.py' 2021-07-29T03:15:23,876 adding 'jcvi/formats/vcf.py' 2021-07-29T03:15:23,879 adding 'jcvi/graphics/__init__.py' 2021-07-29T03:15:23,880 adding 'jcvi/graphics/__main__.py' 2021-07-29T03:15:23,882 adding 'jcvi/graphics/align.py' 2021-07-29T03:15:23,886 adding 'jcvi/graphics/assembly.py' 2021-07-29T03:15:23,890 adding 'jcvi/graphics/base.py' 2021-07-29T03:15:23,892 adding 'jcvi/graphics/blastplot.py' 2021-07-29T03:15:23,895 adding 'jcvi/graphics/chromosome.py' 2021-07-29T03:15:23,897 adding 'jcvi/graphics/coverage.py' 2021-07-29T03:15:23,899 adding 'jcvi/graphics/dotplot.py' 2021-07-29T03:15:23,903 adding 'jcvi/graphics/glyph.py' 2021-07-29T03:15:23,907 adding 'jcvi/graphics/grabseeds.py' 2021-07-29T03:15:23,908 adding 'jcvi/graphics/graph.py' 2021-07-29T03:15:23,910 adding 'jcvi/graphics/heatmap.py' 2021-07-29T03:15:23,912 adding 'jcvi/graphics/histogram.py' 2021-07-29T03:15:23,914 adding 'jcvi/graphics/karyotype.py' 2021-07-29T03:15:23,919 adding 'jcvi/graphics/landscape.py' 2021-07-29T03:15:23,920 adding 'jcvi/graphics/logo.py' 2021-07-29T03:15:23,922 adding 'jcvi/graphics/mummerplot.py' 2021-07-29T03:15:23,924 adding 'jcvi/graphics/synteny.py' 2021-07-29T03:15:23,926 adding 'jcvi/graphics/table.py' 2021-07-29T03:15:23,929 adding 'jcvi/graphics/tree.py' 2021-07-29T03:15:23,931 adding 'jcvi/graphics/wheel.py' 2021-07-29T03:15:23,932 adding 'jcvi/graphics/whisker.py' 2021-07-29T03:15:23,934 adding 'jcvi/projects/__init__.py' 2021-07-29T03:15:23,936 adding 'jcvi/projects/__main__.py' 2021-07-29T03:15:23,939 adding 'jcvi/projects/age.py' 2021-07-29T03:15:23,940 adding 'jcvi/projects/alfalfa.py' 2021-07-29T03:15:23,943 adding 'jcvi/projects/allmaps.py' 2021-07-29T03:15:23,945 adding 'jcvi/projects/bites.py' 2021-07-29T03:15:23,946 adding 'jcvi/projects/heterosis.py' 2021-07-29T03:15:23,948 adding 'jcvi/projects/ies.py' 2021-07-29T03:15:23,951 adding 'jcvi/projects/misc.py' 2021-07-29T03:15:23,955 adding 'jcvi/projects/napus.py' 2021-07-29T03:15:23,958 adding 'jcvi/projects/pineapple.py' 2021-07-29T03:15:23,959 adding 'jcvi/projects/pistachio.py' 2021-07-29T03:15:23,967 adding 'jcvi/projects/str.py' 2021-07-29T03:15:23,970 adding 'jcvi/projects/sugarcane.py' 2021-07-29T03:15:23,974 adding 'jcvi/projects/synfind.py' 2021-07-29T03:15:23,977 adding 'jcvi/projects/tgbs.py' 2021-07-29T03:15:23,979 adding 'jcvi/projects/vanilla.py' 2021-07-29T03:15:23,981 adding 'jcvi/utils/__init__.py' 2021-07-29T03:15:23,982 adding 'jcvi/utils/__main__.py' 2021-07-29T03:15:23,985 adding 'jcvi/utils/aws.py' 2021-07-29T03:15:23,988 adding 'jcvi/utils/cbook.py' 2021-07-29T03:15:23,989 adding 'jcvi/utils/console.py' 2021-07-29T03:15:23,991 adding 'jcvi/utils/db.py' 2021-07-29T03:15:23,993 adding 'jcvi/utils/ez_setup.py' 2021-07-29T03:15:23,995 adding 'jcvi/utils/grouper.py' 2021-07-29T03:15:23,997 adding 'jcvi/utils/orderedcollections.py' 2021-07-29T03:15:23,999 adding 'jcvi/utils/range.py' 2021-07-29T03:15:24,001 adding 'jcvi/utils/table.py' 2021-07-29T03:15:24,004 adding 'jcvi/utils/taxonomy.py' 2021-07-29T03:15:24,006 adding 'jcvi/utils/webcolors.py' 2021-07-29T03:15:24,010 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-29T03:15:24,030 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-29T03:15:24,034 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-29T03:15:24,040 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-29T03:15:24,043 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-29T03:15:24,045 adding 'jcvi/utils/data/__init__.py' 2021-07-29T03:15:24,046 adding 'jcvi/utils/data/adapters.fasta' 2021-07-29T03:15:24,047 adding 'jcvi/utils/data/blosum80.mat' 2021-07-29T03:15:24,049 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-29T03:15:24,050 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-29T03:15:24,056 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-29T03:15:24,059 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-29T03:15:24,061 adding 'jcvi/utils/data/instance.json' 2021-07-29T03:15:24,062 adding 'jcvi/variation/__init__.py' 2021-07-29T03:15:24,063 adding 'jcvi/variation/__main__.py' 2021-07-29T03:15:24,068 adding 'jcvi/variation/cnv.py' 2021-07-29T03:15:24,072 adding 'jcvi/variation/deconvolute.py' 2021-07-29T03:15:24,073 adding 'jcvi/variation/delly.py' 2021-07-29T03:15:24,076 adding 'jcvi/variation/impute.py' 2021-07-29T03:15:24,077 adding 'jcvi/variation/phase.py' 2021-07-29T03:15:24,079 adding 'jcvi/variation/snp.py' 2021-07-29T03:15:24,086 adding 'jcvi/variation/str.py' 2021-07-29T03:15:24,088 adding 'jcvi/variation/tassel.py' 2021-07-29T03:15:24,091 adding 'jcvi-1.1.8.dist-info/LICENSE' 2021-07-29T03:15:24,093 adding 'jcvi-1.1.8.dist-info/METADATA' 2021-07-29T03:15:24,094 adding 'jcvi-1.1.8.dist-info/WHEEL' 2021-07-29T03:15:24,095 adding 'jcvi-1.1.8.dist-info/top_level.txt' 2021-07-29T03:15:24,098 adding 'jcvi-1.1.8.dist-info/RECORD' 2021-07-29T03:15:24,153 removing build/bdist.linux-armv7l/wheel 2021-07-29T03:15:24,460 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-29T03:15:24,477 Created wheel for jcvi: filename=jcvi-1.1.8-cp39-cp39-linux_armv7l.whl size=1232016 sha256=10596f0dd8c4a8f4de426571af34f4ab9d4a4fae18af5dd96bc26dc39f651f2d 2021-07-29T03:15:24,478 Stored in directory: /tmp/pip-ephem-wheel-cache-7v2xaw5p/wheels/e3/8b/53/9b8175f56fef9042b5d5caf5896273913d56341317c2e486ae 2021-07-29T03:15:24,495 Successfully built jcvi 2021-07-29T03:15:24,542 Removed build tracker: '/tmp/pip-req-tracker-ls98mb_g'