2021-07-29T07:55:35,470 Created temporary directory: /tmp/pip-ephem-wheel-cache-02ksw78d
2021-07-29T07:55:35,473 Created temporary directory: /tmp/pip-req-tracker-c9ih62ml
2021-07-29T07:55:35,474 Initialized build tracking at /tmp/pip-req-tracker-c9ih62ml
2021-07-29T07:55:35,474 Created build tracker: /tmp/pip-req-tracker-c9ih62ml
2021-07-29T07:55:35,474 Entered build tracker: /tmp/pip-req-tracker-c9ih62ml
2021-07-29T07:55:35,474 Created temporary directory: /tmp/pip-wheel-uij9plhy
2021-07-29T07:55:35,505 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T07:55:35,506 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T07:55:35,506 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T07:55:35,506 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T07:55:35,507 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T07:55:35,509 WARNING: Location '/isambard/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T07:55:35,510 WARNING: Location 't/isambard/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T07:55:35,510 WARNING: Location 'm/isambard/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T07:55:35,510 WARNING: Location 'p/isambard/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T07:55:35,510 1 location(s) to search for versions of isambard:
2021-07-29T07:55:35,510 * https://pypi.org/simple/isambard/
2021-07-29T07:55:35,511 Fetching project page and analyzing links: https://pypi.org/simple/isambard/
2021-07-29T07:55:35,511 Getting page https://pypi.org/simple/isambard/
2021-07-29T07:55:35,513 Found index url https://pypi.org/simple
2021-07-29T07:55:35,696   Found link https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 (from https://pypi.org/simple/isambard/), version: 2.0.1
2021-07-29T07:55:35,696   Found link https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/), version: 2.2.0
2021-07-29T07:55:35,697   Found link https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c (from https://pypi.org/simple/isambard/), version: 2.3.1
2021-07-29T07:55:35,697 Skipping link: not a file: https://pypi.org/simple/isambard/
2021-07-29T07:55:35,715 Given no hashes to check 1 links for project 'isambard': discarding no candidates
2021-07-29T07:55:35,732 Collecting isambard==2.3.1
2021-07-29T07:55:35,734   Created temporary directory: /tmp/pip-unpack-yn5lxvrn
2021-07-29T07:55:36,049   Downloading ISAMBARD-2.3.1.tar.gz (370 kB)
2021-07-29T07:55:36,268   Added isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c to build tracker '/tmp/pip-req-tracker-c9ih62ml'
2021-07-29T07:55:36,270     Running setup.py (path:/tmp/pip-wheel-uij9plhy/isambard_62482a590a5c43a08f062d128c61f9de/setup.py) egg_info for package isambard
2021-07-29T07:55:36,271     Created temporary directory: /tmp/pip-pip-egg-info-sdsbk9dv
2021-07-29T07:55:36,271     Running command python setup.py egg_info
2021-07-29T07:55:37,704     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uij9plhy/isambard_62482a590a5c43a08f062d128c61f9de/src/isambard/specifications/ta_polypeptide.pyx
2021-07-29T07:55:37,704       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T07:55:38,517     Compiling src/isambard/specifications/ta_polypeptide.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-29T07:55:38,517     [1/1] Cythonizing src/isambard/specifications/ta_polypeptide.pyx
2021-07-29T07:55:38,664     running egg_info
2021-07-29T07:55:38,669     creating /tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info
2021-07-29T07:55:38,673     writing /tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/PKG-INFO
2021-07-29T07:55:38,677     writing dependency_links to /tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/dependency_links.txt
2021-07-29T07:55:38,680     writing requirements to /tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/requires.txt
2021-07-29T07:55:38,681     writing top-level names to /tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/top_level.txt
2021-07-29T07:55:38,683     writing manifest file '/tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/SOURCES.txt'
2021-07-29T07:55:38,851     reading manifest file '/tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/SOURCES.txt'
2021-07-29T07:55:38,852     reading manifest template 'MANIFEST.in'
2021-07-29T07:55:38,880     adding license file 'LICENSE.txt'
2021-07-29T07:55:38,885     writing manifest file '/tmp/pip-pip-egg-info-sdsbk9dv/ISAMBARD.egg-info/SOURCES.txt'
2021-07-29T07:55:39,009   Source in /tmp/pip-wheel-uij9plhy/isambard_62482a590a5c43a08f062d128c61f9de has version 2.3.1, which satisfies requirement isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c
2021-07-29T07:55:39,010   Removed isambard==2.3.1 from https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c from build tracker '/tmp/pip-req-tracker-c9ih62ml'
2021-07-29T07:55:39,014 Created temporary directory: /tmp/pip-unpack-kznmbijt
2021-07-29T07:55:39,015 Building wheels for collected packages: isambard
2021-07-29T07:55:39,019   Created temporary directory: /tmp/pip-wheel-z24ermi9
2021-07-29T07:55:39,019   Building wheel for isambard (setup.py): started
2021-07-29T07:55:39,020   Destination directory: /tmp/pip-wheel-z24ermi9
2021-07-29T07:55:39,020   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uij9plhy/isambard_62482a590a5c43a08f062d128c61f9de/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uij9plhy/isambard_62482a590a5c43a08f062d128c61f9de/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-z24ermi9
2021-07-29T07:55:40,479   running bdist_wheel
2021-07-29T07:55:40,483   running build
2021-07-29T07:55:40,483   running build_py
2021-07-29T07:55:40,623   creating build
2021-07-29T07:55:40,623   creating build/lib.linux-armv7l-3.9
2021-07-29T07:55:40,624   creating build/lib.linux-armv7l-3.9/isambard
2021-07-29T07:55:40,625   copying src/isambard/__init__.py -> build/lib.linux-armv7l-3.9/isambard
2021-07-29T07:55:40,627   creating build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,628   copying src/isambard/specifications/__init__.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,630   copying src/isambard/specifications/solenoid.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,632   copying src/isambard/specifications/coiledcoil.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,634   copying src/isambard/specifications/nucleic_acid_duplex.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,636   copying src/isambard/specifications/nucleic_acid_strand.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,638   copying src/isambard/specifications/helix.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,642   creating build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-29T07:55:40,643   copying src/isambard/modelling/scwrl.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-29T07:55:40,645   copying src/isambard/modelling/non_canonical.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-29T07:55:40,647   copying src/isambard/modelling/__init__.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-29T07:55:40,650   creating build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,651   copying src/isambard/evaluation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,653   copying src/isambard/evaluation/hydrophobic_fitness.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,655   copying src/isambard/evaluation/contact_order.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,657   copying src/isambard/evaluation/packing_density.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,658   copying src/isambard/evaluation/dssp.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,661   copying src/isambard/evaluation/pacc.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-29T07:55:40,664   creating build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-29T07:55:40,665   copying src/isambard/optimisation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-29T07:55:40,667   copying src/isambard/optimisation/evo_optimizers.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-29T07:55:40,670   copying src/isambard/optimisation/base_evo_opt.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-29T07:55:40,672   copying src/isambard/optimisation/mmc_optimizer.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-29T07:55:40,675   running egg_info
2021-07-29T07:55:40,689   writing src/ISAMBARD.egg-info/PKG-INFO
2021-07-29T07:55:40,692   writing dependency_links to src/ISAMBARD.egg-info/dependency_links.txt
2021-07-29T07:55:40,694   writing requirements to src/ISAMBARD.egg-info/requires.txt
2021-07-29T07:55:40,695   writing top-level names to src/ISAMBARD.egg-info/top_level.txt
2021-07-29T07:55:40,704   reading manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-29T07:55:40,706   reading manifest template 'MANIFEST.in'
2021-07-29T07:55:40,730   adding license file 'LICENSE.txt'
2021-07-29T07:55:40,735   writing manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-29T07:55:40,740   creating build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-29T07:55:40,741   copying src/isambard/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-29T07:55:40,743   copying src/isambard/specifications/ta_polypeptide.c -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,760   copying src/isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,788   copying src/isambard/specifications/ta_polypeptide.pyx -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-29T07:55:40,790   creating build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,791   copying src/isambard/modelling/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,793   copying src/isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,796   copying src/isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,799   copying src/isambard/modelling/__pycache__/non_canonical.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,803   copying src/isambard/modelling/__pycache__/scwrl.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-29T07:55:40,806   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-29T07:55:40,807   copying src/isambard/modelling/reference_ampals/README.md -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-29T07:55:40,810   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-29T07:55:40,811   copying src/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-29T07:55:40,813   creating build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,814   copying src/isambard/evaluation/__pycache__/__init__.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,817   copying src/isambard/evaluation/__pycache__/contact_order.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,819   copying src/isambard/evaluation/__pycache__/dssp.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,822   copying src/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,825   copying src/isambard/evaluation/__pycache__/pacc.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,828   copying src/isambard/evaluation/__pycache__/packing_density.cpython-37.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-29T07:55:40,834   running build_ext
2021-07-29T07:55:40,842   building 'isambard.specifications.ta_polypeptide' extension
2021-07-29T07:55:40,843   creating build/temp.linux-armv7l-3.9
2021-07-29T07:55:40,843   creating build/temp.linux-armv7l-3.9/src
2021-07-29T07:55:40,844   creating build/temp.linux-armv7l-3.9/src/isambard
2021-07-29T07:55:40,844   creating build/temp.linux-armv7l-3.9/src/isambard/specifications
2021-07-29T07:55:40,845   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/isambard/specifications/ta_polypeptide.c -o build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o
2021-07-29T07:55:51,864   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o -o build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so
2021-07-29T07:55:52,017   installing to build/bdist.linux-armv7l/wheel
2021-07-29T07:55:52,017   running install
2021-07-29T07:55:52,018   running install_lib
2021-07-29T07:55:52,022   creating build/bdist.linux-armv7l
2021-07-29T07:55:52,023   creating build/bdist.linux-armv7l/wheel
2021-07-29T07:55:52,025   creating build/bdist.linux-armv7l/wheel/isambard
2021-07-29T07:55:52,026   copying build/lib.linux-armv7l-3.9/isambard/__init__.py -> build/bdist.linux-armv7l/wheel/isambard
2021-07-29T07:55:52,029   creating build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,030   copying build/lib.linux-armv7l-3.9/isambard/specifications/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,033   copying build/lib.linux-armv7l-3.9/isambard/specifications/solenoid.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,035   copying build/lib.linux-armv7l-3.9/isambard/specifications/coiledcoil.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,038   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_duplex.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,041   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,060   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_strand.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,063   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.pyx -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,066   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,092   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.c -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,108   copying build/lib.linux-armv7l-3.9/isambard/specifications/helix.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-29T07:55:52,112   creating build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-29T07:55:52,113   copying build/lib.linux-armv7l-3.9/isambard/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-29T07:55:52,115   creating build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-29T07:55:52,116   copying build/lib.linux-armv7l-3.9/isambard/modelling/scwrl.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-29T07:55:52,119   copying build/lib.linux-armv7l-3.9/isambard/modelling/non_canonical.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-29T07:55:52,121   copying build/lib.linux-armv7l-3.9/isambard/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-29T07:55:52,123   creating build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,124   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/non_canonical.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,126   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/scwrl.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,129   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,132   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,135   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-29T07:55:52,137   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-29T07:55:52,138   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-29T07:55:52,141   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-29T07:55:52,142   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-29T07:55:52,145   creating build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,146   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,149   creating build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,150   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/packing_density.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,152   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/dssp.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,154   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/contact_order.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,156   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/pacc.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,159   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,161   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-29T07:55:52,163   copying build/lib.linux-armv7l-3.9/isambard/evaluation/hydrophobic_fitness.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,166   copying build/lib.linux-armv7l-3.9/isambard/evaluation/contact_order.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,168   copying build/lib.linux-armv7l-3.9/isambard/evaluation/packing_density.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,170   copying build/lib.linux-armv7l-3.9/isambard/evaluation/dssp.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,172   copying build/lib.linux-armv7l-3.9/isambard/evaluation/pacc.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-29T07:55:52,175   creating build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-29T07:55:52,176   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-29T07:55:52,178   copying build/lib.linux-armv7l-3.9/isambard/optimisation/evo_optimizers.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-29T07:55:52,182   copying build/lib.linux-armv7l-3.9/isambard/optimisation/base_evo_opt.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-29T07:55:52,184   copying build/lib.linux-armv7l-3.9/isambard/optimisation/mmc_optimizer.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-29T07:55:52,187   running install_egg_info
2021-07-29T07:55:52,224   Copying src/ISAMBARD.egg-info to build/bdist.linux-armv7l/wheel/ISAMBARD-2.3.1-py3.9.egg-info
2021-07-29T07:55:52,237   running install_scripts
2021-07-29T07:55:52,280   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-29T07:55:52,285   creating build/bdist.linux-armv7l/wheel/ISAMBARD-2.3.1.dist-info/WHEEL
2021-07-29T07:55:52,287   creating '/tmp/pip-wheel-z24ermi9/ISAMBARD-2.3.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-29T07:55:52,291   adding 'isambard/__init__.py'
2021-07-29T07:55:52,292   adding 'isambard/__pycache__/__init__.cpython-37.pyc'
2021-07-29T07:55:52,294   adding 'isambard/evaluation/__init__.py'
2021-07-29T07:55:52,296   adding 'isambard/evaluation/contact_order.py'
2021-07-29T07:55:52,297   adding 'isambard/evaluation/dssp.py'
2021-07-29T07:55:52,299   adding 'isambard/evaluation/hydrophobic_fitness.py'
2021-07-29T07:55:52,301   adding 'isambard/evaluation/pacc.py'
2021-07-29T07:55:52,302   adding 'isambard/evaluation/packing_density.py'
2021-07-29T07:55:52,304   adding 'isambard/evaluation/__pycache__/__init__.cpython-37.pyc'
2021-07-29T07:55:52,306   adding 'isambard/evaluation/__pycache__/contact_order.cpython-37.pyc'
2021-07-29T07:55:52,307   adding 'isambard/evaluation/__pycache__/dssp.cpython-37.pyc'
2021-07-29T07:55:52,309   adding 'isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-37.pyc'
2021-07-29T07:55:52,311   adding 'isambard/evaluation/__pycache__/pacc.cpython-37.pyc'
2021-07-29T07:55:52,312   adding 'isambard/evaluation/__pycache__/packing_density.cpython-37.pyc'
2021-07-29T07:55:52,314   adding 'isambard/modelling/__init__.py'
2021-07-29T07:55:52,315   adding 'isambard/modelling/non_canonical.py'
2021-07-29T07:55:52,317   adding 'isambard/modelling/scwrl.py'
2021-07-29T07:55:52,319   adding 'isambard/modelling/__pycache__/__init__.cpython-37.pyc'
2021-07-29T07:55:52,321   adding 'isambard/modelling/__pycache__/create_loop_database.cpython-37.pyc'
2021-07-29T07:55:52,323   adding 'isambard/modelling/__pycache__/extract_loop_data.cpython-37.pyc'
2021-07-29T07:55:52,324   adding 'isambard/modelling/__pycache__/non_canonical.cpython-37.pyc'
2021-07-29T07:55:52,326   adding 'isambard/modelling/__pycache__/scwrl.cpython-37.pyc'
2021-07-29T07:55:52,328   adding 'isambard/modelling/reference_ampals/README.md'
2021-07-29T07:55:52,329   adding 'isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2021-07-29T07:55:52,331   adding 'isambard/optimisation/__init__.py'
2021-07-29T07:55:52,333   adding 'isambard/optimisation/base_evo_opt.py'
2021-07-29T07:55:52,336   adding 'isambard/optimisation/evo_optimizers.py'
2021-07-29T07:55:52,339   adding 'isambard/optimisation/mmc_optimizer.py'
2021-07-29T07:55:52,341   adding 'isambard/specifications/__init__.py'
2021-07-29T07:55:52,342   adding 'isambard/specifications/coiledcoil.py'
2021-07-29T07:55:52,345   adding 'isambard/specifications/helix.py'
2021-07-29T07:55:52,347   adding 'isambard/specifications/nucleic_acid_duplex.py'
2021-07-29T07:55:52,349   adding 'isambard/specifications/nucleic_acid_strand.py'
2021-07-29T07:55:52,350   adding 'isambard/specifications/solenoid.py'
2021-07-29T07:55:52,388   adding 'isambard/specifications/ta_polypeptide.c'
2021-07-29T07:55:52,519   adding 'isambard/specifications/ta_polypeptide.cpython-37m-x86_64-linux-gnu.so'
2021-07-29T07:55:52,653   adding 'isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T07:55:52,659   adding 'isambard/specifications/ta_polypeptide.pyx'
2021-07-29T07:55:52,660   adding 'ISAMBARD-2.3.1.dist-info/LICENSE.txt'
2021-07-29T07:55:52,662   adding 'ISAMBARD-2.3.1.dist-info/METADATA'
2021-07-29T07:55:52,663   adding 'ISAMBARD-2.3.1.dist-info/WHEEL'
2021-07-29T07:55:52,664   adding 'ISAMBARD-2.3.1.dist-info/top_level.txt'
2021-07-29T07:55:52,665   adding 'ISAMBARD-2.3.1.dist-info/RECORD'
2021-07-29T07:55:52,676   removing build/bdist.linux-armv7l/wheel
2021-07-29T07:55:52,799   Building wheel for isambard (setup.py): finished with status 'done'
2021-07-29T07:55:52,810   Created wheel for isambard: filename=ISAMBARD-2.3.1-cp39-cp39-linux_armv7l.whl size=622930 sha256=697398715022626b617288089a4d8f169aba9b6a2741bb64a57baf0008f4a682
2021-07-29T07:55:52,810   Stored in directory: /tmp/pip-ephem-wheel-cache-02ksw78d/wheels/7b/73/36/8f746ec4b52b181d9c8dfd590eee0b1408aa020c669ce6ae0f
2021-07-29T07:55:52,823 Successfully built isambard
2021-07-29T07:55:52,854 Removed build tracker: '/tmp/pip-req-tracker-c9ih62ml'