2021-07-29T08:35:47,130 Created temporary directory: /tmp/pip-ephem-wheel-cache-bo33bb_d
2021-07-29T08:35:47,133 Created temporary directory: /tmp/pip-req-tracker-diivxxtw
2021-07-29T08:35:47,134 Initialized build tracking at /tmp/pip-req-tracker-diivxxtw
2021-07-29T08:35:47,134 Created build tracker: /tmp/pip-req-tracker-diivxxtw
2021-07-29T08:35:47,134 Entered build tracker: /tmp/pip-req-tracker-diivxxtw
2021-07-29T08:35:47,135 Created temporary directory: /tmp/pip-wheel-7idflrex
2021-07-29T08:35:47,165 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T08:35:47,166 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T08:35:47,166 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T08:35:47,166 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T08:35:47,166 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T08:35:47,169 WARNING: Location '/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T08:35:47,169 WARNING: Location 't/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T08:35:47,170 WARNING: Location 'm/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T08:35:47,170 WARNING: Location 'p/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T08:35:47,170 1 location(s) to search for versions of cytohmm:
2021-07-29T08:35:47,170 * https://pypi.org/simple/cytohmm/
2021-07-29T08:35:47,171 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-07-29T08:35:47,171 Getting page https://pypi.org/simple/cytohmm/
2021-07-29T08:35:47,173 Found index url https://pypi.org/simple
2021-07-29T08:35:47,263   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-07-29T08:35:47,264   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-07-29T08:35:47,264   Found link https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 (from https://pypi.org/simple/cytohmm/), version: 0.0.3
2021-07-29T08:35:47,265   Found link https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.0
2021-07-29T08:35:47,266   Found link https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.1
2021-07-29T08:35:47,266 Skipping link: not a file: https://pypi.org/simple/cytohmm/
2021-07-29T08:35:47,283 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-07-29T08:35:47,299 Collecting cytohmm==0.0.2
2021-07-29T08:35:47,301   Created temporary directory: /tmp/pip-unpack-_setg22k
2021-07-29T08:35:47,341   Downloading cytohmm-0.0.2.tar.gz (143 kB)
2021-07-29T08:35:47,447   Added cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 to build tracker '/tmp/pip-req-tracker-diivxxtw'
2021-07-29T08:35:47,448     Running setup.py (path:/tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512/setup.py) egg_info for package cytohmm
2021-07-29T08:35:47,449     Created temporary directory: /tmp/pip-pip-egg-info-u2r1vahs
2021-07-29T08:35:47,449     Running command python setup.py egg_info
2021-07-29T08:35:49,231     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512/src/likelihood.pyx
2021-07-29T08:35:49,231       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T08:35:50,859     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512/src/markov_chain.pyx
2021-07-29T08:35:50,860       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T08:35:52,717     Compiling src/markov_chain.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T08:35:52,717     Compiling src/likelihood.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T08:35:52,717     [1/2] Cythonizing src/likelihood.pyx
2021-07-29T08:35:52,717     [2/2] Cythonizing src/markov_chain.pyx
2021-07-29T08:35:52,863     running egg_info
2021-07-29T08:35:52,866     creating /tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info
2021-07-29T08:35:52,867     writing /tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/PKG-INFO
2021-07-29T08:35:52,869     writing dependency_links to /tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/dependency_links.txt
2021-07-29T08:35:52,872     writing top-level names to /tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/top_level.txt
2021-07-29T08:35:52,873     writing manifest file '/tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/SOURCES.txt'
2021-07-29T08:35:52,882     reading manifest file '/tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/SOURCES.txt'
2021-07-29T08:35:52,883     reading manifest template 'MANIFEST.in'
2021-07-29T08:35:52,894     adding license file 'LICENSE'
2021-07-29T08:35:52,896     writing manifest file '/tmp/pip-pip-egg-info-u2r1vahs/cytohmm.egg-info/SOURCES.txt'
2021-07-29T08:35:53,096   Source in /tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512 has version 0.0.2, which satisfies requirement cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32
2021-07-29T08:35:53,097   Removed cytohmm==0.0.2 from https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 from build tracker '/tmp/pip-req-tracker-diivxxtw'
2021-07-29T08:35:53,101 Created temporary directory: /tmp/pip-unpack-ue9at46k
2021-07-29T08:35:53,101 Building wheels for collected packages: cytohmm
2021-07-29T08:35:53,105   Created temporary directory: /tmp/pip-wheel-3m6ryh6l
2021-07-29T08:35:53,106   Building wheel for cytohmm (setup.py): started
2021-07-29T08:35:53,107   Destination directory: /tmp/pip-wheel-3m6ryh6l
2021-07-29T08:35:53,107   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7idflrex/cytohmm_ea6dca7b81644d1095721f9c6b0c4512/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3m6ryh6l
2021-07-29T08:35:54,862   running bdist_wheel
2021-07-29T08:35:54,866   running build
2021-07-29T08:35:54,866   running build_ext
2021-07-29T08:35:54,872   building 'cytohmm.markov_chain' extension
2021-07-29T08:35:54,872   creating build
2021-07-29T08:35:54,873   creating build/temp.linux-armv7l-3.9
2021-07-29T08:35:54,873   creating build/temp.linux-armv7l-3.9/src
2021-07-29T08:35:54,874   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/markov_chain.c -o build/temp.linux-armv7l-3.9/src/markov_chain.o
2021-07-29T08:35:55,289   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T08:35:55,289                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T08:35:55,289                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T08:35:55,289                    from src/markov_chain.c:634:
2021-07-29T08:35:55,289   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T08:35:55,290      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T08:35:55,290         |  ^~~~~~~
2021-07-29T08:36:05,564   creating build/lib.linux-armv7l-3.9
2021-07-29T08:36:05,564   creating build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T08:36:05,565   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/markov_chain.o -o build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so
2021-07-29T08:36:05,723   building 'cytohmm.likelihood' extension
2021-07-29T08:36:05,723   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/likelihood.c -o build/temp.linux-armv7l-3.9/src/likelihood.o
2021-07-29T08:36:06,107   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T08:36:06,107                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T08:36:06,107                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T08:36:06,107                    from src/likelihood.c:634:
2021-07-29T08:36:06,108   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T08:36:06,108      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T08:36:06,108         |  ^~~~~~~
2021-07-29T08:36:12,729   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/likelihood.o -o build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so
2021-07-29T08:36:12,865   building 'cytohmm.sequence_segmenter' extension
2021-07-29T08:36:12,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/sequence_segmenter.c -o build/temp.linux-armv7l-3.9/src/sequence_segmenter.o
2021-07-29T08:36:17,421   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/sequence_segmenter.o -o build/lib.linux-armv7l-3.9/cytohmm/sequence_segmenter.cpython-39-arm-linux-gnueabihf.so
2021-07-29T08:36:17,562   installing to build/bdist.linux-armv7l/wheel
2021-07-29T08:36:17,562   running install
2021-07-29T08:36:17,563   running install_lib
2021-07-29T08:36:17,568   creating build/bdist.linux-armv7l
2021-07-29T08:36:17,569   creating build/bdist.linux-armv7l/wheel
2021-07-29T08:36:17,570   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T08:36:17,572   copying build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T08:36:17,595   copying build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T08:36:17,607   copying build/lib.linux-armv7l-3.9/cytohmm/sequence_segmenter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T08:36:17,615   running install_egg_info
2021-07-29T08:36:17,640   running egg_info
2021-07-29T08:36:17,641   writing cytohmm.egg-info/PKG-INFO
2021-07-29T08:36:17,643   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-07-29T08:36:17,645   writing top-level names to cytohmm.egg-info/top_level.txt
2021-07-29T08:36:17,650   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T08:36:17,652   reading manifest template 'MANIFEST.in'
2021-07-29T08:36:17,660   adding license file 'LICENSE'
2021-07-29T08:36:17,663   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T08:36:17,665   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.0.2-py3.9.egg-info
2021-07-29T08:36:17,676   running install_scripts
2021-07-29T08:36:17,714   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-29T08:36:17,719   creating build/bdist.linux-armv7l/wheel/cytohmm-0.0.2.dist-info/WHEEL
2021-07-29T08:36:17,722   creating '/tmp/pip-wheel-3m6ryh6l/cytohmm-0.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-29T08:36:17,811   adding 'cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T08:36:17,932   adding 'cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T08:36:18,000   adding 'cytohmm/sequence_segmenter.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T08:36:18,005   adding 'cytohmm-0.0.2.dist-info/LICENSE'
2021-07-29T08:36:18,006   adding 'cytohmm-0.0.2.dist-info/METADATA'
2021-07-29T08:36:18,007   adding 'cytohmm-0.0.2.dist-info/WHEEL'
2021-07-29T08:36:18,008   adding 'cytohmm-0.0.2.dist-info/top_level.txt'
2021-07-29T08:36:18,009   adding 'cytohmm-0.0.2.dist-info/RECORD'
2021-07-29T08:36:18,017   removing build/bdist.linux-armv7l/wheel
2021-07-29T08:36:18,162   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-07-29T08:36:18,170   Created wheel for cytohmm: filename=cytohmm-0.0.2-cp39-cp39-linux_armv7l.whl size=476136 sha256=bdd452e10b8f7526188b72709f6bba8332476b511b5eadf916ee630b85ce6370
2021-07-29T08:36:18,170   Stored in directory: /tmp/pip-ephem-wheel-cache-bo33bb_d/wheels/69/23/fc/c1af568f8e6834baeae9cb36657bf848ac54ddc18295102e8a
2021-07-29T08:36:18,179 Successfully built cytohmm
2021-07-29T08:36:18,198 Removed build tracker: '/tmp/pip-req-tracker-diivxxtw'