2021-07-29T09:28:59,507 Created temporary directory: /tmp/pip-ephem-wheel-cache-_xwk1nf_ 2021-07-29T09:28:59,510 Created temporary directory: /tmp/pip-req-tracker-3zro_6b3 2021-07-29T09:28:59,511 Initialized build tracking at /tmp/pip-req-tracker-3zro_6b3 2021-07-29T09:28:59,511 Created build tracker: /tmp/pip-req-tracker-3zro_6b3 2021-07-29T09:28:59,511 Entered build tracker: /tmp/pip-req-tracker-3zro_6b3 2021-07-29T09:28:59,512 Created temporary directory: /tmp/pip-wheel-4fzmb8qz 2021-07-29T09:28:59,543 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T09:28:59,543 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T09:28:59,544 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T09:28:59,544 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T09:28:59,544 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T09:28:59,547 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-29T09:28:59,682 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-29T09:28:59,682 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-29T09:28:59,683 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-29T09:28:59,683 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-29T09:28:59,683 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-29T09:28:59,683 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-29T09:28:59,684 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-29T09:28:59,684 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-29T09:28:59,684 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-29T09:28:59,684 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-29T09:28:59,685 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-29T09:28:59,685 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-29T09:28:59,685 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-29T09:28:59,686 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-29T09:28:59,686 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-29T09:28:59,686 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-29T09:28:59,686 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-29T09:28:59,687 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-29T09:28:59,713 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-29T09:28:59,731 Collecting jcvi==1.1.9 2021-07-29T09:28:59,733 Created temporary directory: /tmp/pip-unpack-kxsg2_s1 2021-07-29T09:29:00,181 Downloading jcvi-1.1.9.tar.gz (819 kB) 2021-07-29T09:29:00,940 Added jcvi==1.1.9 from https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 to build tracker '/tmp/pip-req-tracker-3zro_6b3' 2021-07-29T09:29:00,941 Running setup.py (path:/tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381/setup.py) egg_info for package jcvi 2021-07-29T09:29:00,942 Created temporary directory: /tmp/pip-pip-egg-info-9kwplyni 2021-07-29T09:29:00,942 Running command python setup.py egg_info 2021-07-29T09:29:02,387 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.9' to '1.1.9' 2021-07-29T09:29:02,387 warnings.warn(tmpl.format(**locals())) 2021-07-29T09:29:02,452 running egg_info 2021-07-29T09:29:02,455 creating /tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info 2021-07-29T09:29:02,456 writing /tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/PKG-INFO 2021-07-29T09:29:02,459 writing dependency_links to /tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/dependency_links.txt 2021-07-29T09:29:02,462 writing requirements to /tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/requires.txt 2021-07-29T09:29:02,465 writing top-level names to /tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/top_level.txt 2021-07-29T09:29:02,468 writing manifest file '/tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:02,492 reading manifest file '/tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:02,494 reading manifest template 'MANIFEST.in' 2021-07-29T09:29:02,498 adding license file 'LICENSE' 2021-07-29T09:29:02,507 writing manifest file '/tmp/pip-pip-egg-info-9kwplyni/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:02,607 Source in /tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381 has version 1.1.9, which satisfies requirement jcvi==1.1.9 from https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 2021-07-29T09:29:02,608 Removed jcvi==1.1.9 from https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 from build tracker '/tmp/pip-req-tracker-3zro_6b3' 2021-07-29T09:29:02,613 Created temporary directory: /tmp/pip-unpack-gw_cpza2 2021-07-29T09:29:02,613 Building wheels for collected packages: jcvi 2021-07-29T09:29:02,618 Created temporary directory: /tmp/pip-wheel-6vtaycon 2021-07-29T09:29:02,618 Building wheel for jcvi (setup.py): started 2021-07-29T09:29:02,619 Destination directory: /tmp/pip-wheel-6vtaycon 2021-07-29T09:29:02,619 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6vtaycon 2021-07-29T09:29:04,064 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.9' to '1.1.9' 2021-07-29T09:29:04,065 warnings.warn(tmpl.format(**locals())) 2021-07-29T09:29:04,131 running bdist_wheel 2021-07-29T09:29:04,135 running build 2021-07-29T09:29:04,135 running build_py 2021-07-29T09:29:04,141 creating build 2021-07-29T09:29:04,141 creating build/lib.linux-armv7l-3.9 2021-07-29T09:29:04,142 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:04,143 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:04,146 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:04,149 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,150 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,152 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,154 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,157 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,159 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,161 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,164 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,167 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,171 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,174 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,177 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,181 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:04,185 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,186 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,189 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,192 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,195 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,198 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,200 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,202 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,206 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,208 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,211 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:04,215 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,216 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,218 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,220 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,223 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,225 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,227 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,230 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,232 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,235 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,238 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,241 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,244 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:04,249 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,250 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,252 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,254 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,257 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,259 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,262 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,264 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,267 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,269 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,271 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,273 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,275 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,278 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,280 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,283 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,285 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,287 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,290 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,293 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,296 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,300 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,302 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,305 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,309 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,312 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,315 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:04,321 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,322 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,325 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,328 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,329 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,331 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,333 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,336 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,338 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,341 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,343 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,345 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,347 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,351 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,354 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,356 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,358 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,361 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,366 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,368 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,373 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,378 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,382 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,384 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,387 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,389 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,393 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,396 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,400 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,402 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,406 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,410 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,411 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,414 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,416 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,418 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,421 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,423 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,425 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,427 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,430 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,432 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,435 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,438 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,440 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:04,444 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,445 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,446 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,449 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,452 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,454 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,456 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,459 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,462 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,465 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,466 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,469 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,473 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,475 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,477 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,480 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,483 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,486 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,488 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,491 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,494 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,496 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,499 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,502 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:04,506 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,507 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,510 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,513 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,515 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,517 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,520 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,521 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,523 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,526 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,529 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,532 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,534 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,537 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,540 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,544 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,547 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,549 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:04,554 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,555 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,558 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,560 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,562 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,566 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,569 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,571 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,573 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,576 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,578 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,580 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:04,585 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,586 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,589 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,590 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,592 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,595 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,599 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,603 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,606 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,609 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,612 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,615 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,618 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,621 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,624 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,627 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,630 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,634 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,637 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,641 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,644 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,648 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,652 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,656 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,660 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,663 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,667 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,671 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,676 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,677 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,679 running egg_info 2021-07-29T09:29:04,713 writing jcvi.egg-info/PKG-INFO 2021-07-29T09:29:04,715 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-29T09:29:04,717 writing requirements to jcvi.egg-info/requires.txt 2021-07-29T09:29:04,718 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-29T09:29:04,736 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:04,743 reading manifest template 'MANIFEST.in' 2021-07-29T09:29:04,746 adding license file 'LICENSE' 2021-07-29T09:29:04,758 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:04,765 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:04,768 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:04,770 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,773 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,778 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,781 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,784 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,788 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,790 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,792 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,795 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,798 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,802 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,806 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:04,826 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-29T09:29:04,828 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.9' 2021-07-29T09:29:04,828 running build_ext 2021-07-29T09:29:04,889 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-29T09:29:05,484 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381/jcvi/assembly/chic.pyx 2021-07-29T09:29:05,484 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T09:29:08,324 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-29T09:29:08,331 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4fzmb8qz/jcvi_55b0faf8cd4840f9a5bf9f3159c1d381/jcvi/formats/cblast.pyx 2021-07-29T09:29:08,332 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T09:29:09,285 building 'jcvi.assembly.chic' extension 2021-07-29T09:29:09,285 creating build/temp.linux-armv7l-3.9 2021-07-29T09:29:09,286 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-29T09:29:09,287 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:09,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-29T09:29:09,724 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-29T09:29:09,724 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-29T09:29:09,724 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-29T09:29:09,725 from jcvi/assembly/chic.c:612: 2021-07-29T09:29:09,725 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-29T09:29:09,725 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-29T09:29:09,725 | ^~~~~~~ 2021-07-29T09:29:13,458 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-29T09:29:13,589 building 'jcvi.formats.cblast' extension 2021-07-29T09:29:13,590 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:13,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-29T09:29:23,081 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-29T09:29:23,249 installing to build/bdist.linux-armv7l/wheel 2021-07-29T09:29:23,249 running install 2021-07-29T09:29:23,251 running install_lib 2021-07-29T09:29:23,256 creating build/bdist.linux-armv7l 2021-07-29T09:29:23,256 creating build/bdist.linux-armv7l/wheel 2021-07-29T09:29:23,258 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:23,260 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,262 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,264 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,266 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,269 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,271 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,273 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,275 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,278 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,280 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,283 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,285 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,288 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:23,291 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:23,295 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,296 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,297 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,300 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,303 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,305 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,308 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,311 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,315 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,318 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,320 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:23,325 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,326 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,328 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,332 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,335 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,337 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,339 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,343 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,346 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,349 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,352 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,356 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,358 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:23,361 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:23,364 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,365 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,368 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,369 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,372 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,375 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,378 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,380 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,382 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,385 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,387 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,390 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,392 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,394 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,397 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,400 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,402 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,404 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,408 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,411 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,413 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,417 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,420 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,422 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,426 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,429 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,433 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:23,438 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,439 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,441 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,444 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,445 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,448 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,450 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,452 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,454 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,457 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,459 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,461 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,464 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,467 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,470 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,471 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,474 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,477 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,484 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,486 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,490 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,516 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,520 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,523 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,526 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,528 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,530 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,533 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,535 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,538 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,544 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,546 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,549 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:23,554 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,555 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,558 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,560 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,562 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,565 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,567 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,570 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,572 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,576 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,578 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,581 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,585 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,587 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:23,591 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,592 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,595 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,596 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,598 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,601 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,603 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,609 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,612 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,615 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,619 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,622 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,624 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,627 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:23,631 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,632 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,634 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,637 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,639 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,642 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,644 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,648 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,652 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,655 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,657 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,660 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,663 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,666 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,668 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,671 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,674 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,677 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,680 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,683 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,687 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,689 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,692 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,695 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:23,699 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,700 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,704 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,707 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,709 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,711 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,714 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,716 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,718 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,722 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,725 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,728 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,731 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,735 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,738 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,743 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,746 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,749 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:23,753 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,754 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,758 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,760 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,762 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,767 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,770 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,772 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,775 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,778 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,781 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,783 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:23,788 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,789 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,792 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,794 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,796 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,799 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,804 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,806 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,809 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,812 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,813 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,816 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,819 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,821 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,823 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,825 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,828 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,833 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,835 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,838 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,849 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,852 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,856 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,859 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,862 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,865 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,868 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,871 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,873 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,875 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:23,880 running install_egg_info 2021-07-29T09:29:23,889 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.9-py3.9.egg-info 2021-07-29T09:29:23,905 running install_scripts 2021-07-29T09:29:23,985 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T09:29:23,991 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.9.dist-info/WHEEL 2021-07-29T09:29:23,994 creating '/tmp/pip-wheel-6vtaycon/jcvi-1.1.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T09:29:23,997 adding 'jcvi/__init__.py' 2021-07-29T09:29:23,999 adding 'jcvi/_version.py' 2021-07-29T09:29:24,001 adding 'jcvi/algorithms/__init__.py' 2021-07-29T09:29:24,002 adding 'jcvi/algorithms/__main__.py' 2021-07-29T09:29:24,005 adding 'jcvi/algorithms/ec.py' 2021-07-29T09:29:24,007 adding 'jcvi/algorithms/formula.py' 2021-07-29T09:29:24,009 adding 'jcvi/algorithms/graph.py' 2021-07-29T09:29:24,011 adding 'jcvi/algorithms/lis.py' 2021-07-29T09:29:24,015 adding 'jcvi/algorithms/lpsolve.py' 2021-07-29T09:29:24,017 adding 'jcvi/algorithms/matrix.py' 2021-07-29T09:29:24,018 adding 'jcvi/algorithms/maxsum.py' 2021-07-29T09:29:24,019 adding 'jcvi/algorithms/ml.py' 2021-07-29T09:29:24,021 adding 'jcvi/algorithms/supermap.py' 2021-07-29T09:29:24,023 adding 'jcvi/algorithms/tsp.py' 2021-07-29T09:29:24,025 adding 'jcvi/annotation/__init__.py' 2021-07-29T09:29:24,026 adding 'jcvi/annotation/__main__.py' 2021-07-29T09:29:24,029 adding 'jcvi/annotation/ahrd.py' 2021-07-29T09:29:24,031 adding 'jcvi/annotation/automaton.py' 2021-07-29T09:29:24,032 adding 'jcvi/annotation/depth.py' 2021-07-29T09:29:24,034 adding 'jcvi/annotation/evm.py' 2021-07-29T09:29:24,036 adding 'jcvi/annotation/maker.py' 2021-07-29T09:29:24,039 adding 'jcvi/annotation/pasa.py' 2021-07-29T09:29:24,041 adding 'jcvi/annotation/qc.py' 2021-07-29T09:29:24,047 adding 'jcvi/annotation/reformat.py' 2021-07-29T09:29:24,049 adding 'jcvi/annotation/stats.py' 2021-07-29T09:29:24,051 adding 'jcvi/annotation/train.py' 2021-07-29T09:29:24,053 adding 'jcvi/apps/__init__.py' 2021-07-29T09:29:24,055 adding 'jcvi/apps/__main__.py' 2021-07-29T09:29:24,057 adding 'jcvi/apps/align.py' 2021-07-29T09:29:24,066 adding 'jcvi/apps/base.py' 2021-07-29T09:29:24,069 adding 'jcvi/apps/biomart.py' 2021-07-29T09:29:24,071 adding 'jcvi/apps/blastplus.py' 2021-07-29T09:29:24,072 adding 'jcvi/apps/bowtie.py' 2021-07-29T09:29:24,074 adding 'jcvi/apps/bwa.py' 2021-07-29T09:29:24,076 adding 'jcvi/apps/cap3.py' 2021-07-29T09:29:24,077 adding 'jcvi/apps/cdhit.py' 2021-07-29T09:29:24,079 adding 'jcvi/apps/emboss.py' 2021-07-29T09:29:24,082 adding 'jcvi/apps/fetch.py' 2021-07-29T09:29:24,085 adding 'jcvi/apps/gbsubmit.py' 2021-07-29T09:29:24,087 adding 'jcvi/apps/gmap.py' 2021-07-29T09:29:24,089 adding 'jcvi/apps/grid.py' 2021-07-29T09:29:24,094 adding 'jcvi/apps/ks.py' 2021-07-29T09:29:24,096 adding 'jcvi/apps/lastz.py' 2021-07-29T09:29:24,097 adding 'jcvi/apps/mask.py' 2021-07-29T09:29:24,102 adding 'jcvi/apps/phylo.py' 2021-07-29T09:29:24,104 adding 'jcvi/apps/r.py' 2021-07-29T09:29:24,106 adding 'jcvi/apps/restriction.py' 2021-07-29T09:29:24,107 adding 'jcvi/apps/script.py' 2021-07-29T09:29:24,108 adding 'jcvi/apps/softlink.py' 2021-07-29T09:29:24,113 adding 'jcvi/apps/uclust.py' 2021-07-29T09:29:24,115 adding 'jcvi/apps/uniprot.py' 2021-07-29T09:29:24,116 adding 'jcvi/apps/vecscreen.py' 2021-07-29T09:29:24,118 adding 'jcvi/assembly/__init__.py' 2021-07-29T09:29:24,119 adding 'jcvi/assembly/__main__.py' 2021-07-29T09:29:24,128 adding 'jcvi/assembly/allmaps.py' 2021-07-29T09:29:24,132 adding 'jcvi/assembly/allpaths.py' 2021-07-29T09:29:24,133 adding 'jcvi/assembly/amos.py' 2021-07-29T09:29:24,136 adding 'jcvi/assembly/automaton.py' 2021-07-29T09:29:24,137 adding 'jcvi/assembly/bambus.py' 2021-07-29T09:29:24,139 adding 'jcvi/assembly/base.py' 2021-07-29T09:29:24,144 adding 'jcvi/assembly/ca.py' 2021-07-29T09:29:24,192 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T09:29:24,195 adding 'jcvi/assembly/chic.pyx' 2021-07-29T09:29:24,197 adding 'jcvi/assembly/coverage.py' 2021-07-29T09:29:24,199 adding 'jcvi/assembly/gaps.py' 2021-07-29T09:29:24,201 adding 'jcvi/assembly/geneticmap.py' 2021-07-29T09:29:24,206 adding 'jcvi/assembly/goldenpath.py' 2021-07-29T09:29:24,215 adding 'jcvi/assembly/hic.py' 2021-07-29T09:29:24,220 adding 'jcvi/assembly/kmer.py' 2021-07-29T09:29:24,222 adding 'jcvi/assembly/meraculous.py' 2021-07-29T09:29:24,224 adding 'jcvi/assembly/opticalmap.py' 2021-07-29T09:29:24,229 adding 'jcvi/assembly/patch.py' 2021-07-29T09:29:24,231 adding 'jcvi/assembly/pbjelly.py' 2021-07-29T09:29:24,234 adding 'jcvi/assembly/postprocess.py' 2021-07-29T09:29:24,237 adding 'jcvi/assembly/preprocess.py' 2021-07-29T09:29:24,239 adding 'jcvi/assembly/sim.py' 2021-07-29T09:29:24,241 adding 'jcvi/assembly/soap.py' 2021-07-29T09:29:24,243 adding 'jcvi/assembly/sspace.py' 2021-07-29T09:29:24,245 adding 'jcvi/assembly/syntenypath.py' 2021-07-29T09:29:24,247 adding 'jcvi/assembly/trinity.py' 2021-07-29T09:29:24,249 adding 'jcvi/assembly/unitig.py' 2021-07-29T09:29:24,251 adding 'jcvi/compara/__init__.py' 2021-07-29T09:29:24,252 adding 'jcvi/compara/__main__.py' 2021-07-29T09:29:24,254 adding 'jcvi/compara/blastfilter.py' 2021-07-29T09:29:24,257 adding 'jcvi/compara/catalog.py' 2021-07-29T09:29:24,261 adding 'jcvi/compara/fractionation.py' 2021-07-29T09:29:24,263 adding 'jcvi/compara/pad.py' 2021-07-29T09:29:24,265 adding 'jcvi/compara/phylogeny.py' 2021-07-29T09:29:24,267 adding 'jcvi/compara/quota.py' 2021-07-29T09:29:24,269 adding 'jcvi/compara/reconstruct.py' 2021-07-29T09:29:24,271 adding 'jcvi/compara/synfind.py' 2021-07-29T09:29:24,280 adding 'jcvi/compara/synteny.py' 2021-07-29T09:29:24,282 adding 'jcvi/formats/__init__.py' 2021-07-29T09:29:24,284 adding 'jcvi/formats/__main__.py' 2021-07-29T09:29:24,285 adding 'jcvi/formats/ace.py' 2021-07-29T09:29:24,292 adding 'jcvi/formats/agp.py' 2021-07-29T09:29:24,297 adding 'jcvi/formats/base.py' 2021-07-29T09:29:24,307 adding 'jcvi/formats/bed.py' 2021-07-29T09:29:24,314 adding 'jcvi/formats/blast.py' 2021-07-29T09:29:24,316 adding 'jcvi/formats/btab.py' 2021-07-29T09:29:24,452 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T09:29:24,459 adding 'jcvi/formats/cblast.pyx' 2021-07-29T09:29:24,461 adding 'jcvi/formats/cdt.py' 2021-07-29T09:29:24,463 adding 'jcvi/formats/chain.py' 2021-07-29T09:29:24,464 adding 'jcvi/formats/contig.py' 2021-07-29T09:29:24,467 adding 'jcvi/formats/coords.py' 2021-07-29T09:29:24,468 adding 'jcvi/formats/excel.py' 2021-07-29T09:29:24,478 adding 'jcvi/formats/fasta.py' 2021-07-29T09:29:24,483 adding 'jcvi/formats/fastq.py' 2021-07-29T09:29:24,484 adding 'jcvi/formats/fpc.py' 2021-07-29T09:29:24,487 adding 'jcvi/formats/genbank.py' 2021-07-29T09:29:24,501 adding 'jcvi/formats/gff.py' 2021-07-29T09:29:24,503 adding 'jcvi/formats/html.py' 2021-07-29T09:29:24,505 adding 'jcvi/formats/maf.py' 2021-07-29T09:29:24,506 adding 'jcvi/formats/obo.py' 2021-07-29T09:29:24,507 adding 'jcvi/formats/paf.py' 2021-07-29T09:29:24,509 adding 'jcvi/formats/pdf.py' 2021-07-29T09:29:24,510 adding 'jcvi/formats/posmap.py' 2021-07-29T09:29:24,512 adding 'jcvi/formats/psl.py' 2021-07-29T09:29:24,514 adding 'jcvi/formats/pyblast.py' 2021-07-29T09:29:24,518 adding 'jcvi/formats/sam.py' 2021-07-29T09:29:24,520 adding 'jcvi/formats/sbt.py' 2021-07-29T09:29:24,522 adding 'jcvi/formats/sizes.py' 2021-07-29T09:29:24,525 adding 'jcvi/formats/vcf.py' 2021-07-29T09:29:24,528 adding 'jcvi/graphics/__init__.py' 2021-07-29T09:29:24,529 adding 'jcvi/graphics/__main__.py' 2021-07-29T09:29:24,531 adding 'jcvi/graphics/align.py' 2021-07-29T09:29:24,534 adding 'jcvi/graphics/assembly.py' 2021-07-29T09:29:24,537 adding 'jcvi/graphics/base.py' 2021-07-29T09:29:24,539 adding 'jcvi/graphics/blastplot.py' 2021-07-29T09:29:24,543 adding 'jcvi/graphics/chromosome.py' 2021-07-29T09:29:24,545 adding 'jcvi/graphics/coverage.py' 2021-07-29T09:29:24,547 adding 'jcvi/graphics/dotplot.py' 2021-07-29T09:29:24,550 adding 'jcvi/graphics/glyph.py' 2021-07-29T09:29:24,555 adding 'jcvi/graphics/grabseeds.py' 2021-07-29T09:29:24,557 adding 'jcvi/graphics/graph.py' 2021-07-29T09:29:24,558 adding 'jcvi/graphics/heatmap.py' 2021-07-29T09:29:24,560 adding 'jcvi/graphics/histogram.py' 2021-07-29T09:29:24,563 adding 'jcvi/graphics/karyotype.py' 2021-07-29T09:29:24,567 adding 'jcvi/graphics/landscape.py' 2021-07-29T09:29:24,568 adding 'jcvi/graphics/logo.py' 2021-07-29T09:29:24,570 adding 'jcvi/graphics/mummerplot.py' 2021-07-29T09:29:24,573 adding 'jcvi/graphics/synteny.py' 2021-07-29T09:29:24,574 adding 'jcvi/graphics/table.py' 2021-07-29T09:29:24,577 adding 'jcvi/graphics/tree.py' 2021-07-29T09:29:24,579 adding 'jcvi/graphics/wheel.py' 2021-07-29T09:29:24,580 adding 'jcvi/graphics/whisker.py' 2021-07-29T09:29:24,582 adding 'jcvi/projects/__init__.py' 2021-07-29T09:29:24,583 adding 'jcvi/projects/__main__.py' 2021-07-29T09:29:24,586 adding 'jcvi/projects/age.py' 2021-07-29T09:29:24,588 adding 'jcvi/projects/alfalfa.py' 2021-07-29T09:29:24,590 adding 'jcvi/projects/allmaps.py' 2021-07-29T09:29:24,592 adding 'jcvi/projects/bites.py' 2021-07-29T09:29:24,594 adding 'jcvi/projects/heterosis.py' 2021-07-29T09:29:24,596 adding 'jcvi/projects/ies.py' 2021-07-29T09:29:24,599 adding 'jcvi/projects/misc.py' 2021-07-29T09:29:24,602 adding 'jcvi/projects/napus.py' 2021-07-29T09:29:24,605 adding 'jcvi/projects/pineapple.py' 2021-07-29T09:29:24,606 adding 'jcvi/projects/pistachio.py' 2021-07-29T09:29:24,615 adding 'jcvi/projects/str.py' 2021-07-29T09:29:24,618 adding 'jcvi/projects/sugarcane.py' 2021-07-29T09:29:24,621 adding 'jcvi/projects/synfind.py' 2021-07-29T09:29:24,624 adding 'jcvi/projects/tgbs.py' 2021-07-29T09:29:24,626 adding 'jcvi/projects/vanilla.py' 2021-07-29T09:29:24,628 adding 'jcvi/utils/__init__.py' 2021-07-29T09:29:24,629 adding 'jcvi/utils/__main__.py' 2021-07-29T09:29:24,632 adding 'jcvi/utils/aws.py' 2021-07-29T09:29:24,634 adding 'jcvi/utils/cbook.py' 2021-07-29T09:29:24,635 adding 'jcvi/utils/console.py' 2021-07-29T09:29:24,637 adding 'jcvi/utils/db.py' 2021-07-29T09:29:24,639 adding 'jcvi/utils/ez_setup.py' 2021-07-29T09:29:24,640 adding 'jcvi/utils/grouper.py' 2021-07-29T09:29:24,642 adding 'jcvi/utils/orderedcollections.py' 2021-07-29T09:29:24,644 adding 'jcvi/utils/range.py' 2021-07-29T09:29:24,646 adding 'jcvi/utils/table.py' 2021-07-29T09:29:24,647 adding 'jcvi/utils/taxonomy.py' 2021-07-29T09:29:24,649 adding 'jcvi/utils/webcolors.py' 2021-07-29T09:29:24,652 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-29T09:29:24,669 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-29T09:29:24,673 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-29T09:29:24,679 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-29T09:29:24,683 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-29T09:29:24,684 adding 'jcvi/utils/data/__init__.py' 2021-07-29T09:29:24,685 adding 'jcvi/utils/data/adapters.fasta' 2021-07-29T09:29:24,686 adding 'jcvi/utils/data/blosum80.mat' 2021-07-29T09:29:24,688 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-29T09:29:24,689 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-29T09:29:24,695 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-29T09:29:24,698 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-29T09:29:24,699 adding 'jcvi/utils/data/instance.json' 2021-07-29T09:29:24,701 adding 'jcvi/variation/__init__.py' 2021-07-29T09:29:24,702 adding 'jcvi/variation/__main__.py' 2021-07-29T09:29:24,707 adding 'jcvi/variation/cnv.py' 2021-07-29T09:29:24,709 adding 'jcvi/variation/deconvolute.py' 2021-07-29T09:29:24,711 adding 'jcvi/variation/delly.py' 2021-07-29T09:29:24,713 adding 'jcvi/variation/impute.py' 2021-07-29T09:29:24,714 adding 'jcvi/variation/phase.py' 2021-07-29T09:29:24,716 adding 'jcvi/variation/snp.py' 2021-07-29T09:29:24,723 adding 'jcvi/variation/str.py' 2021-07-29T09:29:24,725 adding 'jcvi/variation/tassel.py' 2021-07-29T09:29:24,727 adding 'jcvi-1.1.9.dist-info/LICENSE' 2021-07-29T09:29:24,728 adding 'jcvi-1.1.9.dist-info/METADATA' 2021-07-29T09:29:24,729 adding 'jcvi-1.1.9.dist-info/WHEEL' 2021-07-29T09:29:24,730 adding 'jcvi-1.1.9.dist-info/top_level.txt' 2021-07-29T09:29:24,733 adding 'jcvi-1.1.9.dist-info/RECORD' 2021-07-29T09:29:24,755 removing build/bdist.linux-armv7l/wheel 2021-07-29T09:29:25,044 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-29T09:29:25,065 Created wheel for jcvi: filename=jcvi-1.1.9-cp39-cp39-linux_armv7l.whl size=1232064 sha256=35536d3ea9dbbc6e8de7df27b913c6fa6d9a35306dc7c52bf182e9f1eca0c2c3 2021-07-29T09:29:25,065 Stored in directory: /tmp/pip-ephem-wheel-cache-_xwk1nf_/wheels/61/48/2b/5f7d115c122e5ff1975183a4b6674784e42ef25bdd21570be4 2021-07-29T09:29:25,086 Successfully built jcvi 2021-07-29T09:29:25,134 Removed build tracker: '/tmp/pip-req-tracker-3zro_6b3'