2021-07-29T09:29:11,519 Created temporary directory: /tmp/pip-ephem-wheel-cache-p2s1_om4 2021-07-29T09:29:11,522 Created temporary directory: /tmp/pip-req-tracker-vuapgceh 2021-07-29T09:29:11,522 Initialized build tracking at /tmp/pip-req-tracker-vuapgceh 2021-07-29T09:29:11,523 Created build tracker: /tmp/pip-req-tracker-vuapgceh 2021-07-29T09:29:11,523 Entered build tracker: /tmp/pip-req-tracker-vuapgceh 2021-07-29T09:29:11,523 Created temporary directory: /tmp/pip-wheel-u4s3u2r3 2021-07-29T09:29:11,551 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T09:29:11,551 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T09:29:11,551 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T09:29:11,552 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T09:29:11,552 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T09:29:11,554 WARNING: Location '/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:29:11,555 WARNING: Location 't/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:29:11,555 WARNING: Location 'm/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:29:11,555 WARNING: Location 'p/jcvi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:29:11,556 1 location(s) to search for versions of jcvi: 2021-07-29T09:29:11,556 * https://pypi.org/simple/jcvi/ 2021-07-29T09:29:11,556 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-07-29T09:29:11,557 Getting page https://pypi.org/simple/jcvi/ 2021-07-29T09:29:11,558 Found index url https://pypi.org/simple 2021-07-29T09:29:11,675 Found link 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-29T09:29:11,688 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-29T09:29:11,688 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-29T09:29:11,689 Found link 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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-29T09:29:11,690 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-29T09:29:11,690 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-29T09:29:11,690 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-29T09:29:11,691 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-29T09:29:11,691 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-29T09:29:11,691 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-29T09:29:11,691 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-29T09:29:11,692 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-29T09:29:11,692 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-29T09:29:11,692 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-29T09:29:11,693 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-29T09:29:11,693 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-29T09:29:11,719 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-29T09:29:11,738 Collecting jcvi==1.1.10 2021-07-29T09:29:11,740 Created temporary directory: /tmp/pip-unpack-spykkx6t 2021-07-29T09:29:12,225 Downloading jcvi-1.1.10.tar.gz (819 kB) 2021-07-29T09:29:12,988 Added jcvi==1.1.10 from https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a to build tracker '/tmp/pip-req-tracker-vuapgceh' 2021-07-29T09:29:12,989 Running setup.py (path:/tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251/setup.py) egg_info for package jcvi 2021-07-29T09:29:12,990 Created temporary directory: /tmp/pip-pip-egg-info-xdz_4eku 2021-07-29T09:29:12,990 Running command python setup.py egg_info 2021-07-29T09:29:14,453 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.10' to '1.1.10' 2021-07-29T09:29:14,454 warnings.warn(tmpl.format(**locals())) 2021-07-29T09:29:14,505 running egg_info 2021-07-29T09:29:14,508 creating /tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info 2021-07-29T09:29:14,509 writing /tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/PKG-INFO 2021-07-29T09:29:14,512 writing dependency_links to /tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/dependency_links.txt 2021-07-29T09:29:14,514 writing requirements to /tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/requires.txt 2021-07-29T09:29:14,515 writing top-level names to /tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/top_level.txt 2021-07-29T09:29:14,517 writing manifest file '/tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:14,541 reading manifest file '/tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:14,543 reading manifest template 'MANIFEST.in' 2021-07-29T09:29:14,546 adding license file 'LICENSE' 2021-07-29T09:29:14,555 writing manifest file '/tmp/pip-pip-egg-info-xdz_4eku/jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:14,653 Source in /tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251 has version 1.1.10, which satisfies requirement jcvi==1.1.10 from https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a 2021-07-29T09:29:14,654 Removed jcvi==1.1.10 from https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a from build tracker '/tmp/pip-req-tracker-vuapgceh' 2021-07-29T09:29:14,659 Created temporary directory: /tmp/pip-unpack-z4os9pju 2021-07-29T09:29:14,660 Building wheels for collected packages: jcvi 2021-07-29T09:29:14,664 Created temporary directory: /tmp/pip-wheel-x4siesor 2021-07-29T09:29:14,665 Building wheel for jcvi (setup.py): started 2021-07-29T09:29:14,665 Destination directory: /tmp/pip-wheel-x4siesor 2021-07-29T09:29:14,666 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x4siesor 2021-07-29T09:29:16,072 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.10' to '1.1.10' 2021-07-29T09:29:16,072 warnings.warn(tmpl.format(**locals())) 2021-07-29T09:29:16,137 running bdist_wheel 2021-07-29T09:29:16,142 running build 2021-07-29T09:29:16,142 running build_py 2021-07-29T09:29:16,147 creating build 2021-07-29T09:29:16,148 creating build/lib.linux-armv7l-3.9 2021-07-29T09:29:16,148 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:16,149 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:16,151 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T09:29:16,155 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,155 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,157 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,160 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,162 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,164 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,167 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,170 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,174 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,177 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,179 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,182 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,184 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,186 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,189 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,193 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,195 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,198 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,201 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,204 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,205 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,209 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,211 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,213 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,216 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,219 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,221 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,224 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,229 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,230 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,233 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,235 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,238 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,240 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,243 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,245 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,248 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,251 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,253 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,256 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,259 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,261 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,264 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,266 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,269 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,272 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,274 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,276 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,279 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,280 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,282 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,284 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T09:29:16,288 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,289 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,292 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,294 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,297 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,299 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,302 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,304 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,307 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,310 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,312 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,314 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,318 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,322 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,324 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,327 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,329 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,331 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,334 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,336 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,339 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,340 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,343 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,345 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,347 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,349 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,351 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T09:29:16,355 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,356 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,358 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,361 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,363 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,365 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,368 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,370 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,373 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,376 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,377 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,380 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,382 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T09:29:16,386 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,387 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,390 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,396 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,398 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,401 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,404 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,407 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,409 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,412 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,414 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,416 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,420 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,422 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,425 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,427 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,431 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,433 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,436 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,440 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,443 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,444 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,446 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,448 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,450 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,452 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,454 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,457 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,458 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,461 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,463 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,467 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,468 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,470 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,473 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,475 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,479 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,481 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,485 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,486 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,488 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,490 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T09:29:16,493 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,494 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,496 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,498 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,500 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,502 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,505 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,507 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,509 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,511 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,513 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,515 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,517 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,519 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T09:29:16,522 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,523 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,526 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,529 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,531 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,533 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,536 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,539 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,542 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,544 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,549 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,551 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,553 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,555 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,557 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,559 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,561 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,563 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T09:29:16,567 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,568 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,570 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,573 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,575 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,577 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,579 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,582 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,583 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,585 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,588 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,591 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T09:29:16,596 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,597 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,600 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,603 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,605 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,608 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,609 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,612 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,614 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,616 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,618 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,621 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,624 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T09:29:16,627 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,628 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,629 running egg_info 2021-07-29T09:29:16,661 writing jcvi.egg-info/PKG-INFO 2021-07-29T09:29:16,663 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-29T09:29:16,665 writing requirements to jcvi.egg-info/requires.txt 2021-07-29T09:29:16,666 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-29T09:29:16,685 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:16,691 reading manifest template 'MANIFEST.in' 2021-07-29T09:29:16,695 adding license file 'LICENSE' 2021-07-29T09:29:16,706 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T09:29:16,713 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:16,715 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:16,717 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,720 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,724 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,727 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,730 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,734 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,736 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,738 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,740 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,742 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,746 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,749 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T09:29:16,767 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-29T09:29:16,768 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.10' 2021-07-29T09:29:16,768 running build_ext 2021-07-29T09:29:16,833 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-29T09:29:17,441 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251/jcvi/assembly/chic.pyx 2021-07-29T09:29:17,442 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T09:29:20,361 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-29T09:29:20,368 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-u4s3u2r3/jcvi_4faca5acd5c8411a853e26fc7120d251/jcvi/formats/cblast.pyx 2021-07-29T09:29:20,368 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T09:29:21,315 building 'jcvi.assembly.chic' extension 2021-07-29T09:29:21,316 creating build/temp.linux-armv7l-3.9 2021-07-29T09:29:21,316 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-29T09:29:21,317 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-29T09:29:21,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-29T09:29:21,730 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-29T09:29:21,730 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-29T09:29:21,730 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-29T09:29:21,731 from jcvi/assembly/chic.c:620: 2021-07-29T09:29:21,731 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-29T09:29:21,731 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-29T09:29:21,731 | ^~~~~~~ 2021-07-29T09:29:25,465 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-29T09:29:25,598 building 'jcvi.formats.cblast' extension 2021-07-29T09:29:25,599 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-29T09:29:25,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-29T09:29:35,053 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-29T09:29:35,212 installing to build/bdist.linux-armv7l/wheel 2021-07-29T09:29:35,213 running install 2021-07-29T09:29:35,214 running install_lib 2021-07-29T09:29:35,218 creating build/bdist.linux-armv7l 2021-07-29T09:29:35,218 creating build/bdist.linux-armv7l/wheel 2021-07-29T09:29:35,220 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:35,222 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,223 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,225 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,228 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,230 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,232 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,234 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,238 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,242 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,244 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,247 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,249 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,252 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,254 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,257 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,267 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,271 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,273 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,276 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,279 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,282 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,283 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,285 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,288 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,290 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,292 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,295 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,297 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,300 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,302 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T09:29:35,306 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,307 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,310 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,312 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,315 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,317 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,320 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,323 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,326 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,329 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,332 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,335 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,338 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,340 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,344 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,347 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,350 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,353 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,356 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,359 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,362 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,364 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,366 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,368 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T09:29:35,372 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,373 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,377 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,379 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,382 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,385 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,388 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,391 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,394 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,397 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,399 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,402 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,406 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,410 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,413 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,415 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,419 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,421 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,423 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,426 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,429 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,431 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,434 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,436 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,439 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,441 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,443 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T09:29:35,447 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,448 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,451 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,453 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,456 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,459 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,461 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,464 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,467 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,470 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,472 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,475 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,477 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T09:29:35,481 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,482 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,486 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,492 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,495 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,498 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,501 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,505 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,507 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,510 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,512 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,515 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,519 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,522 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,526 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,528 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,533 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,536 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,539 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,544 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,547 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,549 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,552 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,554 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,557 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,559 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,561 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,563 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,566 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,569 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,572 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,575 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,578 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T09:29:35,599 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,600 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,602 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,605 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,608 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,612 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,616 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,620 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,622 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,624 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,627 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T09:29:35,630 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:35,633 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,634 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,637 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,640 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,642 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,644 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,647 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,650 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,653 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,657 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,660 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,665 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,667 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,671 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,672 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,676 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,679 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T09:29:35,684 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,686 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,690 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,693 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,695 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,699 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,702 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,704 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,706 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,709 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,711 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T09:29:35,713 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,714 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,718 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,720 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,723 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,725 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,729 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,732 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,734 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,738 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,743 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,746 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,747 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,750 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,753 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,755 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,758 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,760 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T09:29:35,765 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,766 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,769 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,771 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,774 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,776 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,779 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,781 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,783 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,785 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,788 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,791 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T09:29:35,797 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,798 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,801 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,804 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,807 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,810 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,812 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,815 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,818 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,820 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,823 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,826 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,830 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T09:29:35,832 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T09:29:35,834 running install_egg_info 2021-07-29T09:29:35,846 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.10-py3.9.egg-info 2021-07-29T09:29:35,861 running install_scripts 2021-07-29T09:29:35,929 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T09:29:35,933 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.10.dist-info/WHEEL 2021-07-29T09:29:35,936 creating '/tmp/pip-wheel-x4siesor/jcvi-1.1.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T09:29:35,938 adding 'jcvi/__init__.py' 2021-07-29T09:29:35,940 adding 'jcvi/_version.py' 2021-07-29T09:29:35,942 adding 'jcvi/algorithms/__init__.py' 2021-07-29T09:29:35,943 adding 'jcvi/algorithms/__main__.py' 2021-07-29T09:29:35,945 adding 'jcvi/algorithms/ec.py' 2021-07-29T09:29:35,947 adding 'jcvi/algorithms/formula.py' 2021-07-29T09:29:35,950 adding 'jcvi/algorithms/graph.py' 2021-07-29T09:29:35,951 adding 'jcvi/algorithms/lis.py' 2021-07-29T09:29:35,956 adding 'jcvi/algorithms/lpsolve.py' 2021-07-29T09:29:35,958 adding 'jcvi/algorithms/matrix.py' 2021-07-29T09:29:35,959 adding 'jcvi/algorithms/maxsum.py' 2021-07-29T09:29:35,960 adding 'jcvi/algorithms/ml.py' 2021-07-29T09:29:35,962 adding 'jcvi/algorithms/supermap.py' 2021-07-29T09:29:35,964 adding 'jcvi/algorithms/tsp.py' 2021-07-29T09:29:35,966 adding 'jcvi/annotation/__init__.py' 2021-07-29T09:29:35,967 adding 'jcvi/annotation/__main__.py' 2021-07-29T09:29:35,971 adding 'jcvi/annotation/ahrd.py' 2021-07-29T09:29:35,972 adding 'jcvi/annotation/automaton.py' 2021-07-29T09:29:35,974 adding 'jcvi/annotation/depth.py' 2021-07-29T09:29:35,976 adding 'jcvi/annotation/evm.py' 2021-07-29T09:29:35,979 adding 'jcvi/annotation/maker.py' 2021-07-29T09:29:35,981 adding 'jcvi/annotation/pasa.py' 2021-07-29T09:29:35,984 adding 'jcvi/annotation/qc.py' 2021-07-29T09:29:35,990 adding 'jcvi/annotation/reformat.py' 2021-07-29T09:29:35,992 adding 'jcvi/annotation/stats.py' 2021-07-29T09:29:35,994 adding 'jcvi/annotation/train.py' 2021-07-29T09:29:35,996 adding 'jcvi/apps/__init__.py' 2021-07-29T09:29:35,997 adding 'jcvi/apps/__main__.py' 2021-07-29T09:29:36,000 adding 'jcvi/apps/align.py' 2021-07-29T09:29:36,009 adding 'jcvi/apps/base.py' 2021-07-29T09:29:36,012 adding 'jcvi/apps/biomart.py' 2021-07-29T09:29:36,013 adding 'jcvi/apps/blastplus.py' 2021-07-29T09:29:36,015 adding 'jcvi/apps/bowtie.py' 2021-07-29T09:29:36,017 adding 'jcvi/apps/bwa.py' 2021-07-29T09:29:36,018 adding 'jcvi/apps/cap3.py' 2021-07-29T09:29:36,020 adding 'jcvi/apps/cdhit.py' 2021-07-29T09:29:36,021 adding 'jcvi/apps/emboss.py' 2021-07-29T09:29:36,024 adding 'jcvi/apps/fetch.py' 2021-07-29T09:29:36,027 adding 'jcvi/apps/gbsubmit.py' 2021-07-29T09:29:36,029 adding 'jcvi/apps/gmap.py' 2021-07-29T09:29:36,032 adding 'jcvi/apps/grid.py' 2021-07-29T09:29:36,037 adding 'jcvi/apps/ks.py' 2021-07-29T09:29:36,039 adding 'jcvi/apps/lastz.py' 2021-07-29T09:29:36,040 adding 'jcvi/apps/mask.py' 2021-07-29T09:29:36,045 adding 'jcvi/apps/phylo.py' 2021-07-29T09:29:36,047 adding 'jcvi/apps/r.py' 2021-07-29T09:29:36,048 adding 'jcvi/apps/restriction.py' 2021-07-29T09:29:36,049 adding 'jcvi/apps/script.py' 2021-07-29T09:29:36,051 adding 'jcvi/apps/softlink.py' 2021-07-29T09:29:36,056 adding 'jcvi/apps/uclust.py' 2021-07-29T09:29:36,057 adding 'jcvi/apps/uniprot.py' 2021-07-29T09:29:36,059 adding 'jcvi/apps/vecscreen.py' 2021-07-29T09:29:36,061 adding 'jcvi/assembly/__init__.py' 2021-07-29T09:29:36,062 adding 'jcvi/assembly/__main__.py' 2021-07-29T09:29:36,072 adding 'jcvi/assembly/allmaps.py' 2021-07-29T09:29:36,075 adding 'jcvi/assembly/allpaths.py' 2021-07-29T09:29:36,077 adding 'jcvi/assembly/amos.py' 2021-07-29T09:29:36,079 adding 'jcvi/assembly/automaton.py' 2021-07-29T09:29:36,081 adding 'jcvi/assembly/bambus.py' 2021-07-29T09:29:36,082 adding 'jcvi/assembly/base.py' 2021-07-29T09:29:36,087 adding 'jcvi/assembly/ca.py' 2021-07-29T09:29:36,135 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T09:29:36,138 adding 'jcvi/assembly/chic.pyx' 2021-07-29T09:29:36,140 adding 'jcvi/assembly/coverage.py' 2021-07-29T09:29:36,142 adding 'jcvi/assembly/gaps.py' 2021-07-29T09:29:36,145 adding 'jcvi/assembly/geneticmap.py' 2021-07-29T09:29:36,149 adding 'jcvi/assembly/goldenpath.py' 2021-07-29T09:29:36,158 adding 'jcvi/assembly/hic.py' 2021-07-29T09:29:36,164 adding 'jcvi/assembly/kmer.py' 2021-07-29T09:29:36,165 adding 'jcvi/assembly/meraculous.py' 2021-07-29T09:29:36,168 adding 'jcvi/assembly/opticalmap.py' 2021-07-29T09:29:36,172 adding 'jcvi/assembly/patch.py' 2021-07-29T09:29:36,174 adding 'jcvi/assembly/pbjelly.py' 2021-07-29T09:29:36,177 adding 'jcvi/assembly/postprocess.py' 2021-07-29T09:29:36,180 adding 'jcvi/assembly/preprocess.py' 2021-07-29T09:29:36,182 adding 'jcvi/assembly/sim.py' 2021-07-29T09:29:36,184 adding 'jcvi/assembly/soap.py' 2021-07-29T09:29:36,186 adding 'jcvi/assembly/sspace.py' 2021-07-29T09:29:36,189 adding 'jcvi/assembly/syntenypath.py' 2021-07-29T09:29:36,191 adding 'jcvi/assembly/trinity.py' 2021-07-29T09:29:36,193 adding 'jcvi/assembly/unitig.py' 2021-07-29T09:29:36,195 adding 'jcvi/compara/__init__.py' 2021-07-29T09:29:36,196 adding 'jcvi/compara/__main__.py' 2021-07-29T09:29:36,198 adding 'jcvi/compara/blastfilter.py' 2021-07-29T09:29:36,201 adding 'jcvi/compara/catalog.py' 2021-07-29T09:29:36,205 adding 'jcvi/compara/fractionation.py' 2021-07-29T09:29:36,208 adding 'jcvi/compara/pad.py' 2021-07-29T09:29:36,209 adding 'jcvi/compara/phylogeny.py' 2021-07-29T09:29:36,211 adding 'jcvi/compara/quota.py' 2021-07-29T09:29:36,213 adding 'jcvi/compara/reconstruct.py' 2021-07-29T09:29:36,215 adding 'jcvi/compara/synfind.py' 2021-07-29T09:29:36,223 adding 'jcvi/compara/synteny.py' 2021-07-29T09:29:36,226 adding 'jcvi/formats/__init__.py' 2021-07-29T09:29:36,227 adding 'jcvi/formats/__main__.py' 2021-07-29T09:29:36,229 adding 'jcvi/formats/ace.py' 2021-07-29T09:29:36,236 adding 'jcvi/formats/agp.py' 2021-07-29T09:29:36,242 adding 'jcvi/formats/base.py' 2021-07-29T09:29:36,252 adding 'jcvi/formats/bed.py' 2021-07-29T09:29:36,258 adding 'jcvi/formats/blast.py' 2021-07-29T09:29:36,260 adding 'jcvi/formats/btab.py' 2021-07-29T09:29:36,397 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T09:29:36,404 adding 'jcvi/formats/cblast.pyx' 2021-07-29T09:29:36,405 adding 'jcvi/formats/cdt.py' 2021-07-29T09:29:36,407 adding 'jcvi/formats/chain.py' 2021-07-29T09:29:36,408 adding 'jcvi/formats/contig.py' 2021-07-29T09:29:36,410 adding 'jcvi/formats/coords.py' 2021-07-29T09:29:36,412 adding 'jcvi/formats/excel.py' 2021-07-29T09:29:36,422 adding 'jcvi/formats/fasta.py' 2021-07-29T09:29:36,427 adding 'jcvi/formats/fastq.py' 2021-07-29T09:29:36,428 adding 'jcvi/formats/fpc.py' 2021-07-29T09:29:36,431 adding 'jcvi/formats/genbank.py' 2021-07-29T09:29:36,446 adding 'jcvi/formats/gff.py' 2021-07-29T09:29:36,448 adding 'jcvi/formats/html.py' 2021-07-29T09:29:36,450 adding 'jcvi/formats/maf.py' 2021-07-29T09:29:36,451 adding 'jcvi/formats/obo.py' 2021-07-29T09:29:36,452 adding 'jcvi/formats/paf.py' 2021-07-29T09:29:36,454 adding 'jcvi/formats/pdf.py' 2021-07-29T09:29:36,455 adding 'jcvi/formats/posmap.py' 2021-07-29T09:29:36,457 adding 'jcvi/formats/psl.py' 2021-07-29T09:29:36,459 adding 'jcvi/formats/pyblast.py' 2021-07-29T09:29:36,463 adding 'jcvi/formats/sam.py' 2021-07-29T09:29:36,465 adding 'jcvi/formats/sbt.py' 2021-07-29T09:29:36,466 adding 'jcvi/formats/sizes.py' 2021-07-29T09:29:36,470 adding 'jcvi/formats/vcf.py' 2021-07-29T09:29:36,472 adding 'jcvi/graphics/__init__.py' 2021-07-29T09:29:36,473 adding 'jcvi/graphics/__main__.py' 2021-07-29T09:29:36,476 adding 'jcvi/graphics/align.py' 2021-07-29T09:29:36,478 adding 'jcvi/graphics/assembly.py' 2021-07-29T09:29:36,482 adding 'jcvi/graphics/base.py' 2021-07-29T09:29:36,484 adding 'jcvi/graphics/blastplot.py' 2021-07-29T09:29:36,487 adding 'jcvi/graphics/chromosome.py' 2021-07-29T09:29:36,489 adding 'jcvi/graphics/coverage.py' 2021-07-29T09:29:36,492 adding 'jcvi/graphics/dotplot.py' 2021-07-29T09:29:36,495 adding 'jcvi/graphics/glyph.py' 2021-07-29T09:29:36,499 adding 'jcvi/graphics/grabseeds.py' 2021-07-29T09:29:36,500 adding 'jcvi/graphics/graph.py' 2021-07-29T09:29:36,502 adding 'jcvi/graphics/heatmap.py' 2021-07-29T09:29:36,504 adding 'jcvi/graphics/histogram.py' 2021-07-29T09:29:36,506 adding 'jcvi/graphics/karyotype.py' 2021-07-29T09:29:36,510 adding 'jcvi/graphics/landscape.py' 2021-07-29T09:29:36,512 adding 'jcvi/graphics/logo.py' 2021-07-29T09:29:36,513 adding 'jcvi/graphics/mummerplot.py' 2021-07-29T09:29:36,516 adding 'jcvi/graphics/synteny.py' 2021-07-29T09:29:36,518 adding 'jcvi/graphics/table.py' 2021-07-29T09:29:36,521 adding 'jcvi/graphics/tree.py' 2021-07-29T09:29:36,523 adding 'jcvi/graphics/wheel.py' 2021-07-29T09:29:36,524 adding 'jcvi/graphics/whisker.py' 2021-07-29T09:29:36,526 adding 'jcvi/projects/__init__.py' 2021-07-29T09:29:36,527 adding 'jcvi/projects/__main__.py' 2021-07-29T09:29:36,530 adding 'jcvi/projects/age.py' 2021-07-29T09:29:36,532 adding 'jcvi/projects/alfalfa.py' 2021-07-29T09:29:36,534 adding 'jcvi/projects/allmaps.py' 2021-07-29T09:29:36,536 adding 'jcvi/projects/bites.py' 2021-07-29T09:29:36,538 adding 'jcvi/projects/heterosis.py' 2021-07-29T09:29:36,540 adding 'jcvi/projects/ies.py' 2021-07-29T09:29:36,543 adding 'jcvi/projects/misc.py' 2021-07-29T09:29:36,547 adding 'jcvi/projects/napus.py' 2021-07-29T09:29:36,549 adding 'jcvi/projects/pineapple.py' 2021-07-29T09:29:36,551 adding 'jcvi/projects/pistachio.py' 2021-07-29T09:29:36,559 adding 'jcvi/projects/str.py' 2021-07-29T09:29:36,562 adding 'jcvi/projects/sugarcane.py' 2021-07-29T09:29:36,566 adding 'jcvi/projects/synfind.py' 2021-07-29T09:29:36,569 adding 'jcvi/projects/tgbs.py' 2021-07-29T09:29:36,571 adding 'jcvi/projects/vanilla.py' 2021-07-29T09:29:36,573 adding 'jcvi/utils/__init__.py' 2021-07-29T09:29:36,574 adding 'jcvi/utils/__main__.py' 2021-07-29T09:29:36,577 adding 'jcvi/utils/aws.py' 2021-07-29T09:29:36,580 adding 'jcvi/utils/cbook.py' 2021-07-29T09:29:36,581 adding 'jcvi/utils/console.py' 2021-07-29T09:29:36,583 adding 'jcvi/utils/db.py' 2021-07-29T09:29:36,584 adding 'jcvi/utils/ez_setup.py' 2021-07-29T09:29:36,586 adding 'jcvi/utils/grouper.py' 2021-07-29T09:29:36,588 adding 'jcvi/utils/orderedcollections.py' 2021-07-29T09:29:36,591 adding 'jcvi/utils/range.py' 2021-07-29T09:29:36,592 adding 'jcvi/utils/table.py' 2021-07-29T09:29:36,594 adding 'jcvi/utils/taxonomy.py' 2021-07-29T09:29:36,595 adding 'jcvi/utils/webcolors.py' 2021-07-29T09:29:36,598 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-29T09:29:36,615 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-29T09:29:36,620 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-29T09:29:36,626 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-29T09:29:36,630 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-29T09:29:36,631 adding 'jcvi/utils/data/__init__.py' 2021-07-29T09:29:36,632 adding 'jcvi/utils/data/adapters.fasta' 2021-07-29T09:29:36,634 adding 'jcvi/utils/data/blosum80.mat' 2021-07-29T09:29:36,636 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-29T09:29:36,637 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-29T09:29:36,643 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-29T09:29:36,646 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-29T09:29:36,647 adding 'jcvi/utils/data/instance.json' 2021-07-29T09:29:36,649 adding 'jcvi/variation/__init__.py' 2021-07-29T09:29:36,650 adding 'jcvi/variation/__main__.py' 2021-07-29T09:29:36,655 adding 'jcvi/variation/cnv.py' 2021-07-29T09:29:36,657 adding 'jcvi/variation/deconvolute.py' 2021-07-29T09:29:36,659 adding 'jcvi/variation/delly.py' 2021-07-29T09:29:36,661 adding 'jcvi/variation/impute.py' 2021-07-29T09:29:36,663 adding 'jcvi/variation/phase.py' 2021-07-29T09:29:36,665 adding 'jcvi/variation/snp.py' 2021-07-29T09:29:36,671 adding 'jcvi/variation/str.py' 2021-07-29T09:29:36,673 adding 'jcvi/variation/tassel.py' 2021-07-29T09:29:36,676 adding 'jcvi-1.1.10.dist-info/LICENSE' 2021-07-29T09:29:36,677 adding 'jcvi-1.1.10.dist-info/METADATA' 2021-07-29T09:29:36,678 adding 'jcvi-1.1.10.dist-info/WHEEL' 2021-07-29T09:29:36,679 adding 'jcvi-1.1.10.dist-info/top_level.txt' 2021-07-29T09:29:36,682 adding 'jcvi-1.1.10.dist-info/RECORD' 2021-07-29T09:29:36,708 removing build/bdist.linux-armv7l/wheel 2021-07-29T09:29:37,000 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-29T09:29:37,017 Created wheel for jcvi: filename=jcvi-1.1.10-cp39-cp39-linux_armv7l.whl size=1232207 sha256=7b8d4a205f51501dac49cbe015dff398601f0c3bb8cf99a12529dbf83671b3ba 2021-07-29T09:29:37,017 Stored in directory: /tmp/pip-ephem-wheel-cache-p2s1_om4/wheels/ec/bb/cb/864388c9f49f31118208c0fecbd2db37d147cf432aa827d2e4 2021-07-29T09:29:37,045 Successfully built jcvi 2021-07-29T09:29:37,089 Removed build tracker: '/tmp/pip-req-tracker-vuapgceh'