2021-07-29T09:39:30,141 Created temporary directory: /tmp/pip-ephem-wheel-cache-svmy5_4o 2021-07-29T09:39:30,144 Created temporary directory: /tmp/pip-req-tracker-__jpi94o 2021-07-29T09:39:30,144 Initialized build tracking at /tmp/pip-req-tracker-__jpi94o 2021-07-29T09:39:30,144 Created build tracker: /tmp/pip-req-tracker-__jpi94o 2021-07-29T09:39:30,144 Entered build tracker: /tmp/pip-req-tracker-__jpi94o 2021-07-29T09:39:30,145 Created temporary directory: /tmp/pip-wheel-umt9ka0k 2021-07-29T09:39:30,181 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T09:39:30,181 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T09:39:30,181 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T09:39:30,182 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T09:39:30,182 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T09:39:30,185 WARNING: Location '/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:39:30,185 WARNING: Location 't/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:39:30,185 WARNING: Location 'm/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:39:30,186 WARNING: Location 'p/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T09:39:30,186 1 location(s) to search for versions of asap3: 2021-07-29T09:39:30,186 * https://pypi.org/simple/asap3/ 2021-07-29T09:39:30,186 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-29T09:39:30,187 Getting page https://pypi.org/simple/asap3/ 2021-07-29T09:39:30,188 Found index url https://pypi.org/simple 2021-07-29T09:39:30,288 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-29T09:39:30,289 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-29T09:39:30,289 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-29T09:39:30,289 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-29T09:39:30,290 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-29T09:39:30,290 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-29T09:39:30,290 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-29T09:39:30,291 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-29T09:39:30,291 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-29T09:39:30,291 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-29T09:39:30,291 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-29T09:39:30,292 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-29T09:39:30,292 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-29T09:39:30,292 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-29T09:39:30,293 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-29T09:39:30,293 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-29T09:39:30,293 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-29T09:39:30,293 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-29T09:39:30,294 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-29T09:39:30,294 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-29T09:39:30,294 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-29T09:39:30,315 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-29T09:39:30,333 Collecting asap3==3.12.3 2021-07-29T09:39:30,334 Created temporary directory: /tmp/pip-unpack-2ob3uvf4 2021-07-29T09:39:30,812 Downloading asap3-3.12.3.tar.gz (840 kB) 2021-07-29T09:39:32,324 Added asap3==3.12.3 from https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 to build tracker '/tmp/pip-req-tracker-__jpi94o' 2021-07-29T09:39:32,325 Running setup.py (path:/tmp/pip-wheel-umt9ka0k/asap3_38178fe17f634fcc9aa6f905ecaea6ff/setup.py) egg_info for package asap3 2021-07-29T09:39:32,326 Created temporary directory: /tmp/pip-pip-egg-info-j2qq6hn4 2021-07-29T09:39:32,326 Running command python setup.py egg_info 2021-07-29T09:39:33,567 Asap version number: 3.12.3 2021-07-29T09:39:33,568 customize-local.py not found - this is OK. 2021-07-29T09:39:33,568 customize-piwheels38.py not found - this is OK. 2021-07-29T09:39:33,568 Reading customization from customize.py 2021-07-29T09:39:33,568 Setting CC=mpicxx -pthread 2021-07-29T09:39:33,568 Setting CXX=mpicxx -pthread 2021-07-29T09:39:33,569 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T09:39:33,569 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T09:39:33,569 Recording version info into VersionInfo_autogen 2021-07-29T09:39:33,569 CC = mpicxx -pthread 2021-07-29T09:39:33,569 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-29T09:39:33,569 Identifying source files 2021-07-29T09:39:33,569 Identifying Python submodules 2021-07-29T09:39:33,570 running egg_info 2021-07-29T09:39:33,570 creating /tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info 2021-07-29T09:39:33,570 writing /tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/PKG-INFO 2021-07-29T09:39:33,572 writing dependency_links to /tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/dependency_links.txt 2021-07-29T09:39:33,575 writing top-level names to /tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/top_level.txt 2021-07-29T09:39:33,576 writing manifest file '/tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/SOURCES.txt' 2021-07-29T09:39:33,951 reading manifest file '/tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/SOURCES.txt' 2021-07-29T09:39:33,953 reading manifest template 'MANIFEST.in' 2021-07-29T09:39:34,020 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T09:39:34,020 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T09:39:34,021 adding license file 'LICENSE' 2021-07-29T09:39:34,021 adding license file 'LICENSE.LESSER' 2021-07-29T09:39:34,041 writing manifest file '/tmp/pip-pip-egg-info-j2qq6hn4/asap3.egg-info/SOURCES.txt' 2021-07-29T09:39:34,150 Source in /tmp/pip-wheel-umt9ka0k/asap3_38178fe17f634fcc9aa6f905ecaea6ff has version 3.12.3, which satisfies requirement asap3==3.12.3 from https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 2021-07-29T09:39:34,151 Removed asap3==3.12.3 from https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 from build tracker '/tmp/pip-req-tracker-__jpi94o' 2021-07-29T09:39:34,155 Created temporary directory: /tmp/pip-unpack-5j2zkq42 2021-07-29T09:39:34,156 Building wheels for collected packages: asap3 2021-07-29T09:39:34,161 Created temporary directory: /tmp/pip-wheel-rbvpf_74 2021-07-29T09:39:34,161 Building wheel for asap3 (setup.py): started 2021-07-29T09:39:34,162 Destination directory: /tmp/pip-wheel-rbvpf_74 2021-07-29T09:39:34,162 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-umt9ka0k/asap3_38178fe17f634fcc9aa6f905ecaea6ff/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-umt9ka0k/asap3_38178fe17f634fcc9aa6f905ecaea6ff/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rbvpf_74 2021-07-29T09:39:35,072 Asap version number: 3.12.3 2021-07-29T09:39:35,072 customize-local.py not found - this is OK. 2021-07-29T09:39:35,073 customize-piwheels38.py not found - this is OK. 2021-07-29T09:39:35,073 Reading customization from customize.py 2021-07-29T09:39:35,075 Setting CC=mpicxx -pthread 2021-07-29T09:39:35,076 Setting CXX=mpicxx -pthread 2021-07-29T09:39:35,076 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T09:39:35,076 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T09:39:35,089 Identifying source files 2021-07-29T09:39:35,093 Identifying Python submodules 2021-07-29T09:39:35,249 running bdist_wheel 2021-07-29T09:39:35,445 running build 2021-07-29T09:39:35,445 running build_py 2021-07-29T09:39:35,583 creating build 2021-07-29T09:39:35,584 creating build/lib.linux-armv7l-3.9 2021-07-29T09:39:35,584 creating build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,586 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,588 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,590 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,591 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,593 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,596 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,598 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,601 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,602 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,604 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,606 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,608 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T09:39:35,610 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,611 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,613 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,614 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,616 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,618 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T09:39:35,621 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T09:39:35,622 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T09:39:35,630 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T09:39:35,636 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T09:39:35,641 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T09:39:35,642 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T09:39:35,644 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T09:39:35,652 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T09:39:35,659 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,662 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,675 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,686 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,688 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,691 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T09:39:35,696 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,697 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,700 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,703 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,705 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,707 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,710 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,711 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,713 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T09:39:35,715 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T09:39:35,716 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T09:39:35,718 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T09:39:35,720 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T09:39:35,721 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T09:39:35,724 creating build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T09:39:35,724 copying Python/asap3/visualize/fieldplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T09:39:35,727 copying Python/asap3/visualize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T09:39:35,728 copying Python/asap3/visualize/primiplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T09:39:35,732 copying Python/asap3/visualize/colortable.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T09:39:35,736 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,737 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,739 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,741 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,743 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,745 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,746 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,748 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,750 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,752 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,754 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T09:39:35,757 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,758 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,760 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,762 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,764 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,766 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,768 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,772 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,775 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,776 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,779 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,781 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T09:39:35,787 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,788 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,789 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,791 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,793 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,797 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,799 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,801 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,803 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,804 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T09:39:35,807 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,808 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,810 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,812 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,814 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,816 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T09:39:35,819 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,820 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,823 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,824 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,826 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,828 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,831 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,833 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,834 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,836 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T09:39:35,840 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,841 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,842 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,845 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,847 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,850 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,852 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,853 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,855 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,857 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,859 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,861 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,863 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,865 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,867 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T09:39:35,870 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T09:39:35,871 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T09:39:35,873 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,874 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,876 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,878 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,879 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,881 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,885 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,886 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,888 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,890 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T09:39:35,894 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T09:39:35,894 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T09:39:35,897 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T09:39:35,899 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T09:39:35,901 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T09:39:35,904 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:39:35,905 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:39:35,908 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:39:35,910 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:39:35,929 running build_ext 2021-07-29T09:39:35,936 building '_asap' extension 2021-07-29T09:39:35,938 creating build/temp.linux-armv7l-3.9 2021-07-29T09:39:35,938 creating build/temp.linux-armv7l-3.9/Basics 2021-07-29T09:39:35,940 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-29T09:39:35,941 creating build/temp.linux-armv7l-3.9/Interface 2021-07-29T09:39:35,942 creating build/temp.linux-armv7l-3.9/PTM 2021-07-29T09:39:35,943 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-29T09:39:35,943 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-29T09:39:35,944 creating build/temp.linux-armv7l-3.9/Parallel 2021-07-29T09:39:35,945 creating build/temp.linux-armv7l-3.9/ParallelInterface 2021-07-29T09:39:35,945 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-29T09:39:35,946 creating build/temp.linux-armv7l-3.9/Tools 2021-07-29T09:39:35,947 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-29T09:39:35,948 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-29T09:39:37,429 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-29T09:39:39,014 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-29T09:39:41,743 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-29T09:39:44,174 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-29T09:39:45,728 In file included from Basics/AsapPython.h:44, 2021-07-29T09:39:45,728 from Basics/ImageAtoms.h:31, 2021-07-29T09:39:45,728 from Basics/ImageAtoms.cpp:27: 2021-07-29T09:39:45,728 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-29T09:39:45,729 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-29T09:39:45,729 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T09:39:45,729 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:39:45,729 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T09:39:45,729 52 | ASSERT(refcount == 0); 2021-07-29T09:39:45,729 | ^~~~~~ 2021-07-29T09:39:45,729 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-29T09:39:45,730 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T09:39:45,730 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:39:45,730 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T09:39:45,730 52 | ASSERT(refcount == 0); 2021-07-29T09:39:45,730 | ^~~~~~ 2021-07-29T09:39:45,732 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T09:39:45,732 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,732 82 | if (pos.capacity() < nTot) 2021-07-29T09:39:45,732 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T09:39:45,733 In file included from Basics/AsapPython.h:44, 2021-07-29T09:39:45,733 from Basics/ImageAtoms.h:31, 2021-07-29T09:39:45,733 from Basics/ImageAtoms.cpp:27: 2021-07-29T09:39:45,733 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,734 84 | ASSERT(allpositions.size() >= nTot); 2021-07-29T09:39:45,734 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:39:45,734 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,734 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,734 | ^~ 2021-07-29T09:39:45,739 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,740 86 | ASSERT(pos.size() == nTot); 2021-07-29T09:39:45,740 | ~~~~~~~~~~~^~~~~~~ 2021-07-29T09:39:45,740 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,740 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,740 | ^~ 2021-07-29T09:39:45,741 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T09:39:45,742 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,742 95 | ASSERT(allpositions.size() >= n); 2021-07-29T09:39:45,742 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T09:39:45,742 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,742 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,742 | ^~ 2021-07-29T09:39:45,743 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,743 97 | if (pos.capacity() < n) 2021-07-29T09:39:45,743 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T09:39:45,764 In file included from Basics/AsapPython.h:44, 2021-07-29T09:39:45,764 from Basics/ImageAtoms.h:31, 2021-07-29T09:39:45,764 from Basics/ImageAtoms.cpp:27: 2021-07-29T09:39:45,764 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-29T09:39:45,764 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,764 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-29T09:39:45,764 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:39:45,765 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,765 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,765 | ^~ 2021-07-29T09:39:45,769 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,769 221 | if (allpositions.capacity() < nSize) 2021-07-29T09:39:45,770 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:39:45,770 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,770 223 | if (allnumbers.capacity() < nSize) 2021-07-29T09:39:45,770 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:39:45,772 In file included from Basics/AsapPython.h:44, 2021-07-29T09:39:45,773 from Basics/ImageAtoms.h:31, 2021-07-29T09:39:45,773 from Basics/ImageAtoms.cpp:27: 2021-07-29T09:39:45,773 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-29T09:39:45,773 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,773 238 | ASSERT(allpositions.size() <= nSize); 2021-07-29T09:39:45,773 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:39:45,773 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,773 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,774 | ^~ 2021-07-29T09:39:45,774 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:39:45,775 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-29T09:39:45,775 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:39:45,775 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:45,775 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:45,775 | ^~ 2021-07-29T09:39:48,274 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-29T09:39:49,924 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-29T09:39:49,924 Basics/ImagePotential.cpp:93:38: required from here 2021-07-29T09:39:49,924 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:39:49,924 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-29T09:39:49,924 | ~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:39:49,931 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-29T09:39:49,931 Basics/ImagePotential.cpp:118:45: required from here 2021-07-29T09:39:49,931 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:39:51,431 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-29T09:39:53,990 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-29T09:39:55,123 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-29T09:39:56,595 In file included from Basics/AsapPython.h:44, 2021-07-29T09:39:56,596 from Basics/MolecularDynamics.h:30, 2021-07-29T09:39:56,596 from Basics/MolecularDynamics.cpp:27: 2021-07-29T09:39:56,596 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-29T09:39:56,596 Basics/MolecularDynamics.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:39:56,596 237 | ASSERT(n == obs_kwargs.size()); 2021-07-29T09:39:56,597 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:39:56,597 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:39:56,597 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:39:56,597 | ^~ 2021-07-29T09:39:57,932 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-29T09:40:00,544 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-29T09:40:02,324 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-29T09:40:02,324 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:02,324 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T09:40:02,324 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:02,327 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:02,327 from Basics/NeighborCellLocator.h:35, 2021-07-29T09:40:02,328 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T09:40:02,328 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-29T09:40:02,328 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,328 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T09:40:02,328 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T09:40:02,328 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,329 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,329 | ^~ 2021-07-29T09:40:02,339 Basics/NeighborCellLocator.cpp:324:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,339 324 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-29T09:40:02,339 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:40:02,340 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:02,340 from Basics/NeighborCellLocator.h:35, 2021-07-29T09:40:02,340 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T09:40:02,340 Basics/NeighborCellLocator.cpp:335:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,340 335 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-29T09:40:02,340 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:40:02,341 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,341 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,341 | ^~ 2021-07-29T09:40:02,341 Basics/NeighborCellLocator.cpp:336:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:02,341 336 | for (int i = 0; i < cells.size(); i++) 2021-07-29T09:40:02,341 | ~~^~~~~~~~~~~~~~ 2021-07-29T09:40:02,342 Basics/NeighborCellLocator.cpp:372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:02,342 372 | for (int i = 0; i < cells.size(); i++) 2021-07-29T09:40:02,342 | ~~^~~~~~~~~~~~~~ 2021-07-29T09:40:02,359 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-29T09:40:02,359 Basics/NeighborCellLocator.cpp:487:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:02,359 487 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T09:40:02,359 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:02,359 Basics/NeighborCellLocator.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:02,360 490 | for (int i = 0; i < cells.size(); i++) 2021-07-29T09:40:02,360 | ~~^~~~~~~~~~~~~~ 2021-07-29T09:40:02,419 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:02,420 from Basics/NeighborCellLocator.h:35, 2021-07-29T09:40:02,420 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T09:40:02,420 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-29T09:40:02,420 Basics/NeighborCellLocator.cpp:1041:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,420 1041 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T09:40:02,420 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T09:40:02,421 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,421 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,421 | ^~ 2021-07-29T09:40:02,421 Basics/NeighborCellLocator.cpp:1048:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,421 1048 | if (wrappedPositions.capacity() < spsz) 2021-07-29T09:40:02,421 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T09:40:02,422 Basics/NeighborCellLocator.cpp:1051:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,422 1051 | if (offsetPositions.capacity() < spsz) 2021-07-29T09:40:02,422 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T09:40:02,423 Basics/NeighborCellLocator.cpp:1088:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,423 1088 | if (wrappedPositions.capacity() < spsz) 2021-07-29T09:40:02,423 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T09:40:02,424 Basics/NeighborCellLocator.cpp:1091:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,424 1091 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-29T09:40:02,424 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T09:40:02,439 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:02,439 from Basics/NeighborCellLocator.h:35, 2021-07-29T09:40:02,440 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T09:40:02,440 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-29T09:40:02,440 Basics/NeighborCellLocator.cpp:1263:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,440 1263 | ASSERT(referencePositions.size() == nAtoms); 2021-07-29T09:40:02,440 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:40:02,440 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,440 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,441 | ^~ 2021-07-29T09:40:02,441 Basics/NeighborCellLocator.cpp:1264:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,441 1264 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-29T09:40:02,441 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T09:40:02,441 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,441 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,441 | ^~ 2021-07-29T09:40:02,443 Basics/NeighborCellLocator.cpp:1281:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,444 1281 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-29T09:40:02,444 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T09:40:02,444 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:02,444 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:02,444 | ^~ 2021-07-29T09:40:02,459 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-29T09:40:02,460 Basics/NeighborCellLocator.cpp:1412:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,460 1412 | if (referencePositions.size() > n) 2021-07-29T09:40:02,460 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:02,461 Basics/NeighborCellLocator.cpp:1414:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,461 1414 | if (wrappedPositions.size() > n) 2021-07-29T09:40:02,461 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:02,462 Basics/NeighborCellLocator.cpp:1416:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,463 1416 | if (scaledPositions.size() > n) 2021-07-29T09:40:02,463 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:02,464 Basics/NeighborCellLocator.cpp:1418:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,464 1418 | if (offsetPositions.size() > n) 2021-07-29T09:40:02,464 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:02,465 Basics/NeighborCellLocator.cpp:1420:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,465 1420 | if (scaledOffsetPositions.size() > n) 2021-07-29T09:40:02,465 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:02,470 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-29T09:40:02,471 Basics/NeighborCellLocator.cpp:1452:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:02,471 1452 | if (i->size() > longest) 2021-07-29T09:40:02,471 | ~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:40:03,084 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:03,084 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:40:03,084 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T09:40:03,084 Interface/Templates.h: At global scope: 2021-07-29T09:40:03,085 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:03,085 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:03,085 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:09,364 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-29T09:40:11,079 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-29T09:40:11,079 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,079 126 | if (nAllAtoms != nbList.size()) 2021-07-29T09:40:11,079 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,080 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,080 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-29T09:40:11,080 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,098 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,099 200 | if (nbList[i].capacity() < reservedLength) 2021-07-29T09:40:11,099 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,099 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,099 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-29T09:40:11,099 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,106 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T09:40:11,106 Basics/NeighborList.cpp:357:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,106 357 | if (size < nbList[a1].size()) 2021-07-29T09:40:11,106 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,115 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T09:40:11,115 Basics/NeighborList.cpp:477:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,115 477 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-29T09:40:11,115 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,152 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-29T09:40:11,152 Basics/NeighborList.cpp:624:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T09:40:11,152 624 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T09:40:11,155 Basics/NeighborList.cpp:654:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T09:40:11,155 654 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T09:40:11,171 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-29T09:40:11,171 Basics/NeighborList.cpp:756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,171 756 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T09:40:11,171 Basics/NeighborList.cpp:758:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,172 758 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T09:40:11,183 Basics/NeighborList.cpp:795:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,183 795 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T09:40:11,183 Basics/NeighborList.cpp:797:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:40:11,184 797 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T09:40:11,194 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-29T09:40:11,194 Basics/NeighborList.cpp:834:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,194 834 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-29T09:40:11,194 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,196 Basics/NeighborList.cpp:840:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,196 840 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-29T09:40:11,196 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,206 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-29T09:40:11,206 Basics/NeighborList.cpp:910:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:11,206 910 | for (int i = 0; i < translationTable.size(); i++) 2021-07-29T09:40:11,207 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:11,678 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:11,678 from Basics/NeighborList.h:37, 2021-07-29T09:40:11,678 from Basics/NeighborList.cpp:29: 2021-07-29T09:40:11,678 Interface/Templates.h: At global scope: 2021-07-29T09:40:11,679 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:11,679 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:11,679 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:12,792 In file included from /usr/include/c++/10/vector:72, 2021-07-29T09:40:12,792 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:12,792 from Basics/Atoms.h:36, 2021-07-29T09:40:12,793 from Basics/NeighborLocator.h:41, 2021-07-29T09:40:12,793 from Basics/NeighborList.h:37, 2021-07-29T09:40:12,793 from Basics/NeighborList.cpp:29: 2021-07-29T09:40:12,793 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T09:40:12,793 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:12,793 721 | vector<_Tp, _Alloc>:: 2021-07-29T09:40:12,793 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:12,794 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:12,794 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:12,884 In file included from /usr/include/c++/10/vector:67, 2021-07-29T09:40:12,884 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:12,884 from Basics/Atoms.h:36, 2021-07-29T09:40:12,885 from Basics/NeighborLocator.h:41, 2021-07-29T09:40:12,885 from Basics/NeighborList.h:37, 2021-07-29T09:40:12,885 from Basics/NeighborList.cpp:29: 2021-07-29T09:40:12,885 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T09:40:12,885 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:12,885 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:12,885 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:12,886 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:12,886 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:12,886 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:12,900 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T09:40:12,900 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:12,900 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:12,900 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:12,901 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:12,901 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:12,901 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:15,789 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-29T09:40:17,500 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T09:40:17,500 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:40:17,500 33 | if (size < nbList[a1].size()) 2021-07-29T09:40:17,500 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:17,709 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:17,709 from Basics/NeighborList.h:37, 2021-07-29T09:40:17,709 from Basics/NeighborList2013.h:11, 2021-07-29T09:40:17,709 from Basics/NeighborList2013.cpp:8: 2021-07-29T09:40:17,709 Interface/Templates.h: At global scope: 2021-07-29T09:40:17,710 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:17,710 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:17,710 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:18,134 In file included from /usr/include/c++/10/vector:72, 2021-07-29T09:40:18,134 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:18,134 from Basics/Atoms.h:36, 2021-07-29T09:40:18,134 from Basics/NeighborLocator.h:41, 2021-07-29T09:40:18,134 from Basics/NeighborList.h:37, 2021-07-29T09:40:18,134 from Basics/NeighborList2013.h:11, 2021-07-29T09:40:18,134 from Basics/NeighborList2013.cpp:8: 2021-07-29T09:40:18,135 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T09:40:18,135 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:18,135 721 | vector<_Tp, _Alloc>:: 2021-07-29T09:40:18,135 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:18,135 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:18,136 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:18,227 In file included from /usr/include/c++/10/vector:67, 2021-07-29T09:40:18,227 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:18,228 from Basics/Atoms.h:36, 2021-07-29T09:40:18,228 from Basics/NeighborLocator.h:41, 2021-07-29T09:40:18,228 from Basics/NeighborList.h:37, 2021-07-29T09:40:18,228 from Basics/NeighborList2013.h:11, 2021-07-29T09:40:18,228 from Basics/NeighborList2013.cpp:8: 2021-07-29T09:40:18,228 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T09:40:18,228 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:18,228 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:18,229 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:18,229 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:18,229 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:18,229 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:18,243 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T09:40:18,243 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:18,243 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:18,244 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:18,244 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:18,244 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:18,244 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:18,737 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-29T09:40:20,262 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T09:40:20,263 Basics/NormalAtoms.cpp:426:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,263 426 | if (numbers.size() != nAtoms+nGhosts) 2021-07-29T09:40:20,263 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:40:20,266 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T09:40:20,266 Basics/NormalAtoms.cpp:471:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,267 471 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-29T09:40:20,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:40:20,270 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:20,270 from Basics/NormalAtoms.cpp:27: 2021-07-29T09:40:20,270 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T09:40:20,271 Basics/NormalAtoms.cpp:529:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,271 529 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-29T09:40:20,271 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:20,271 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:20,271 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:20,271 | ^~ 2021-07-29T09:40:20,271 Basics/NormalAtoms.cpp:530:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,272 530 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-29T09:40:20,272 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:20,275 Basics/NormalAtoms.cpp:536:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T09:40:20,276 536 | if (pos.capacity() < nAtoms) 2021-07-29T09:40:20,276 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:40:20,276 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:20,276 from Basics/NormalAtoms.cpp:27: 2021-07-29T09:40:20,277 Basics/NormalAtoms.cpp:539:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T09:40:20,277 539 | ASSERT(pos.size() == nAtoms); 2021-07-29T09:40:20,277 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:40:20,277 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:20,277 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:20,277 | ^~ 2021-07-29T09:40:20,277 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T09:40:20,278 Basics/NormalAtoms.cpp:551:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,278 551 | ASSERT(positions.size() >= n); 2021-07-29T09:40:20,278 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T09:40:20,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:20,278 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:20,278 | ^~ 2021-07-29T09:40:20,279 Basics/NormalAtoms.cpp:553:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:40:20,279 553 | if (pos.capacity() < n) 2021-07-29T09:40:20,279 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T09:40:21,747 In file included from /usr/include/c++/10/vector:72, 2021-07-29T09:40:21,748 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:21,748 from Basics/NormalAtoms.h:33, 2021-07-29T09:40:21,748 from Basics/NormalAtoms.cpp:29: 2021-07-29T09:40:21,748 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T09:40:21,748 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:21,748 721 | vector<_Tp, _Alloc>:: 2021-07-29T09:40:21,749 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:21,749 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:21,749 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:22,876 In file included from /usr/include/c++/10/vector:67, 2021-07-29T09:40:22,876 from Basics/AtomsBasis.h:33, 2021-07-29T09:40:22,877 from Basics/NormalAtoms.h:33, 2021-07-29T09:40:22,877 from Basics/NormalAtoms.cpp:29: 2021-07-29T09:40:22,877 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T09:40:22,877 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:22,877 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:22,877 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:22,877 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:22,878 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:22,878 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:22,878 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:40:22,878 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T09:40:22,878 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:22,878 1666 | std::__iterator_category(__first)); 2021-07-29T09:40:22,878 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:40:22,878 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:40:24,042 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-29T09:40:25,850 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-29T09:40:27,539 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-29T09:40:28,641 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-29T09:40:30,935 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-29T09:40:32,961 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:32,961 from Basics/NeighborList.h:37, 2021-07-29T09:40:32,961 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:32,961 from Brenner/BrennerPotential.cpp:26: 2021-07-29T09:40:32,961 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:32,961 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:32,962 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:34,099 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-29T09:40:36,000 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:36,000 from Basics/NeighborList.h:37, 2021-07-29T09:40:36,001 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:36,001 from Brenner/bcuint.cpp:27: 2021-07-29T09:40:36,001 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:36,001 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:36,001 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:36,565 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-29T09:40:38,546 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:38,547 from Basics/NeighborList.h:37, 2021-07-29T09:40:38,547 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:38,547 from Brenner/caguts.cpp:44: 2021-07-29T09:40:38,547 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:38,547 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:38,547 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:39,425 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-29T09:40:40,657 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-29T09:40:40,780 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-29T09:40:42,666 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:42,667 from Basics/NeighborList.h:37, 2021-07-29T09:40:42,667 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:42,667 from Brenner/mtable.cpp:7: 2021-07-29T09:40:42,667 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:42,667 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:42,667 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:43,265 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-29T09:40:45,314 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:45,314 from Basics/NeighborList.h:37, 2021-07-29T09:40:45,314 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:45,314 from Brenner/pibond.cpp:7: 2021-07-29T09:40:45,314 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:45,314 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:45,314 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:47,674 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-29T09:40:49,539 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:49,540 from Basics/NeighborList.h:37, 2021-07-29T09:40:49,540 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:49,540 from Brenner/asapbrenner.h:7, 2021-07-29T09:40:49,540 from Brenner/radic.cpp:27: 2021-07-29T09:40:49,540 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:49,540 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:49,541 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:50,081 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-29T09:40:50,561 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-29T09:40:52,551 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:52,551 from Basics/NeighborList.h:37, 2021-07-29T09:40:52,551 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:52,551 from Brenner/sili_germ.cpp:7: 2021-07-29T09:40:52,551 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:52,551 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:52,552 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:53,167 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-29T09:40:55,025 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:40:55,026 from Basics/NeighborList.h:37, 2021-07-29T09:40:55,026 from Brenner/BrennerPotential.h:32, 2021-07-29T09:40:55,026 from Brenner/asapbrenner.h:7, 2021-07-29T09:40:55,026 from Brenner/spgch.h:4, 2021-07-29T09:40:55,026 from Brenner/spgch.cpp:1: 2021-07-29T09:40:55,026 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:40:55,026 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:40:55,026 | ^~~~~~~~~~~~~~ 2021-07-29T09:40:55,155 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-29T09:40:56,672 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:56,672 from Interface/DynamicsInterface.h:29, 2021-07-29T09:40:56,672 from Interface/DynamicsInterface.cpp:26: 2021-07-29T09:40:56,672 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:40:56,672 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:56,673 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:40:56,673 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:56,673 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:56,673 | ^~ 2021-07-29T09:40:56,675 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:40:56,675 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:56,675 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:40:56,675 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:56,676 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:56,676 | ^~ 2021-07-29T09:40:56,684 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:40:56,684 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:56,684 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:40:56,685 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:56,685 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:56,685 | ^~ 2021-07-29T09:40:56,687 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:40:56,687 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:56,687 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:40:56,687 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:56,687 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:56,688 | ^~ 2021-07-29T09:40:56,698 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:40:56,699 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:56,699 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:40:56,699 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:56,699 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:56,699 | ^~ 2021-07-29T09:40:56,705 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,705 Interface/DynamicsInterface.cpp:72:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,706 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T09:40:56,706 | ^~~~~~~ 2021-07-29T09:40:56,706 Interface/DynamicsInterface.cpp:72:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,706 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T09:40:56,706 | ^~~~~~ 2021-07-29T09:40:56,706 Interface/DynamicsInterface.cpp:72:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,707 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T09:40:56,707 | ^~~~~~~~~~ 2021-07-29T09:40:56,709 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,709 Interface/DynamicsInterface.cpp:111:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,709 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,709 | ^~~~~~~ 2021-07-29T09:40:56,710 Interface/DynamicsInterface.cpp:111:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,710 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,710 | ^~~~~~ 2021-07-29T09:40:56,710 Interface/DynamicsInterface.cpp:111:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,710 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,710 | ^~~~~~~~~~ 2021-07-29T09:40:56,711 Interface/DynamicsInterface.cpp:111:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,711 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,711 | ^~~~~~~ 2021-07-29T09:40:56,711 Interface/DynamicsInterface.cpp:111:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,711 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,711 | ^~~~~~~ 2021-07-29T09:40:56,712 Interface/DynamicsInterface.cpp:111:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,712 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,712 | ^~~~ 2021-07-29T09:40:56,712 Interface/DynamicsInterface.cpp:111:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,712 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,712 | ^~~~ 2021-07-29T09:40:56,713 Interface/DynamicsInterface.cpp:111:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,713 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,713 | ^~~~~~~ 2021-07-29T09:40:56,713 Interface/DynamicsInterface.cpp:111:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,713 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T09:40:56,713 | ^~~~~~ 2021-07-29T09:40:56,715 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,716 Interface/DynamicsInterface.cpp:157:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,716 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T09:40:56,716 | ^~~~~~~ 2021-07-29T09:40:56,716 Interface/DynamicsInterface.cpp:157:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,716 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T09:40:56,717 | ^~~~~~~~~~~ 2021-07-29T09:40:56,717 Interface/DynamicsInterface.cpp:157:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,717 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T09:40:56,717 | ^~~~~ 2021-07-29T09:40:56,717 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,717 Interface/DynamicsInterface.cpp:185:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,717 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,718 | ^~~~~~ 2021-07-29T09:40:56,718 Interface/DynamicsInterface.cpp:185:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,718 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,718 | ^~~~ 2021-07-29T09:40:56,718 Interface/DynamicsInterface.cpp:185:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,718 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,718 | ^~~~ 2021-07-29T09:40:56,719 Interface/DynamicsInterface.cpp:185:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,719 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,719 | ^~~~~~~ 2021-07-29T09:40:56,719 Interface/DynamicsInterface.cpp:185:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,719 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,719 | ^~~~~~ 2021-07-29T09:40:56,719 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,720 Interface/DynamicsInterface.cpp:209:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,720 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,720 | ^~~~~~ 2021-07-29T09:40:56,720 Interface/DynamicsInterface.cpp:209:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,720 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,720 | ^~~~ 2021-07-29T09:40:56,720 Interface/DynamicsInterface.cpp:209:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,721 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,721 | ^~~~ 2021-07-29T09:40:56,721 Interface/DynamicsInterface.cpp:209:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,721 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,721 | ^~~~~~~ 2021-07-29T09:40:56,721 Interface/DynamicsInterface.cpp:209:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,722 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T09:40:56,722 | ^~~~~~ 2021-07-29T09:40:56,722 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T09:40:56,722 Interface/DynamicsInterface.cpp:246:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:40:56,722 246 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-29T09:40:56,722 | ^~~~~~~~~~ 2021-07-29T09:40:57,453 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-29T09:40:59,064 In file included from Basics/AsapPython.h:44, 2021-07-29T09:40:59,064 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-29T09:40:59,064 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:40:59,064 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:59,064 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:40:59,065 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:59,065 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:59,065 | ^~ 2021-07-29T09:40:59,076 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:40:59,076 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:59,076 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:40:59,076 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:59,076 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:59,076 | ^~ 2021-07-29T09:40:59,085 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:40:59,086 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:59,086 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:40:59,086 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:59,086 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:59,086 | ^~ 2021-07-29T09:40:59,097 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:40:59,097 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:59,097 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:40:59,098 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:59,098 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:59,098 | ^~ 2021-07-29T09:40:59,108 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:40:59,109 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:40:59,109 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:40:59,109 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:40:59,109 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:40:59,109 | ^~ 2021-07-29T09:40:59,527 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-29T09:41:01,029 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-29T09:41:02,589 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:02,589 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-29T09:41:02,589 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:41:02,590 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:02,590 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:41:02,590 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:02,590 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:02,590 | ^~ 2021-07-29T09:41:02,599 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:41:02,600 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:02,600 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:41:02,600 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:02,600 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:02,600 | ^~ 2021-07-29T09:41:02,608 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:41:02,608 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:02,609 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:41:02,609 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:02,609 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:02,609 | ^~ 2021-07-29T09:41:02,619 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:41:02,619 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:02,619 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:41:02,620 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:02,620 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:02,620 | ^~ 2021-07-29T09:41:02,629 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:41:02,630 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:02,630 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:41:02,630 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:02,630 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:02,630 | ^~ 2021-07-29T09:41:02,829 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:02,830 Interface/NeighborLocatorInterface.cpp:166:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,830 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T09:41:02,830 | ^~~~~~ 2021-07-29T09:41:02,830 Interface/NeighborLocatorInterface.cpp:166:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,830 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T09:41:02,831 | ^~~~~~~ 2021-07-29T09:41:02,831 Interface/NeighborLocatorInterface.cpp:166:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,831 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T09:41:02,831 | ^~~~~~~~~~~~~ 2021-07-29T09:41:02,831 Interface/NeighborLocatorInterface.cpp:166:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,831 166 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T09:41:02,831 | ^~~~~~ 2021-07-29T09:41:02,832 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:02,833 Interface/NeighborLocatorInterface.cpp:218:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,833 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:41:02,833 | ^~~~~~ 2021-07-29T09:41:02,833 Interface/NeighborLocatorInterface.cpp:218:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,833 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:41:02,833 | ^~~~~~~ 2021-07-29T09:41:02,833 Interface/NeighborLocatorInterface.cpp:218:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,834 218 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:41:02,834 | ^~~~~~~~~~~~~ 2021-07-29T09:41:02,867 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNBQuery(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:02,867 Interface/NeighborLocatorInterface.cpp:397:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,867 397 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T09:41:02,867 | ^~~~~~~~~~~~~~ 2021-07-29T09:41:02,867 Interface/NeighborLocatorInterface.cpp:397:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,868 397 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T09:41:02,868 | ^~~~~~ 2021-07-29T09:41:02,873 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:02,873 Interface/NeighborLocatorInterface.cpp:488:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,873 488 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T09:41:02,874 | ^~~ 2021-07-29T09:41:02,874 Interface/NeighborLocatorInterface.cpp:488:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:02,874 488 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T09:41:02,874 | ^~~~~~ 2021-07-29T09:41:05,332 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-29T09:41:06,630 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:06,630 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:06,631 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T09:41:06,631 | ^~~ 2021-07-29T09:41:06,631 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:06,631 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T09:41:06,631 | ^~~~~~~~~~~~ 2021-07-29T09:41:06,875 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-29T09:41:08,541 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:08,541 Interface/PTMInterface.cpp:95:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,541 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T09:41:08,541 | ^~~~~~~ 2021-07-29T09:41:08,541 Interface/PTMInterface.cpp:95:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,542 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T09:41:08,542 | ^~~~~~~~ 2021-07-29T09:41:08,542 Interface/PTMInterface.cpp:95:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,542 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T09:41:08,542 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:08,542 Interface/PTMInterface.cpp:96:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,543 96 | "calculate_strains", "quick", 2021-07-29T09:41:08,543 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:08,543 Interface/PTMInterface.cpp:96:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,543 96 | "calculate_strains", "quick", 2021-07-29T09:41:08,543 | ^~~~~~~ 2021-07-29T09:41:08,543 Interface/PTMInterface.cpp:97:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,544 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T09:41:08,544 | ^~~~~~~~~~~~~~~ 2021-07-29T09:41:08,544 Interface/PTMInterface.cpp:97:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:08,544 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T09:41:08,544 | ^~~~~~~~~~~~~~~~~ 2021-07-29T09:41:08,570 In file included from /usr/include/python3.9/Python.h:61, 2021-07-29T09:41:08,570 from Basics/AsapPython.h:38, 2021-07-29T09:41:08,570 from Interface/PTMInterface.h:30, 2021-07-29T09:41:08,570 from Interface/PTMInterface.cpp:1: 2021-07-29T09:41:08,570 Interface/PTMInterface.cpp:299:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:08,570 299 | assert(m < indices.size()); 2021-07-29T09:41:08,571 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T09:41:08,571 Interface/PTMInterface.cpp:301:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:08,571 301 | assert(idx >= 0 && idx < indices.size()); 2021-07-29T09:41:08,572 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:41:08,795 Interface/PTMInterface.cpp: At global scope: 2021-07-29T09:41:08,795 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-29T09:41:08,796 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-29T09:41:08,796 | ^~~~~ 2021-07-29T09:41:08,797 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:41:08,797 from Interface/PTMInterface.cpp:4: 2021-07-29T09:41:08,797 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:41:08,797 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:41:08,797 | ^~~~~~~~~~~~~~ 2021-07-29T09:41:10,345 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-29T09:41:11,863 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:11,863 from Interface/PotentialInterface.cpp:29: 2021-07-29T09:41:11,863 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:41:11,864 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:11,864 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:41:11,864 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:11,864 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:11,864 | ^~ 2021-07-29T09:41:11,874 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:41:11,874 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:11,874 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:41:11,874 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:11,874 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:11,874 | ^~ 2021-07-29T09:41:11,882 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:41:11,882 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:11,883 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:41:11,883 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:11,883 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:11,883 | ^~ 2021-07-29T09:41:11,893 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:41:11,893 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:11,893 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:41:11,894 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:11,894 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:11,894 | ^~ 2021-07-29T09:41:11,903 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:41:11,904 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:11,904 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:41:11,904 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:11,904 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:11,904 | ^~ 2021-07-29T09:41:12,159 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,159 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,160 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T09:41:12,160 | ^~~~~~ 2021-07-29T09:41:12,160 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,160 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T09:41:12,160 | ^~~~~~~~~ 2021-07-29T09:41:12,162 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,162 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,162 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T09:41:12,162 | ^~~~~~~~~~~~ 2021-07-29T09:41:12,162 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,162 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T09:41:12,163 | ^~~~~~~~~~~~~~~~~ 2021-07-29T09:41:12,163 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,163 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T09:41:12,163 | ^~~~~~~~~ 2021-07-29T09:41:12,164 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,164 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,164 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T09:41:12,164 | ^~~~~~ 2021-07-29T09:41:12,164 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,165 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T09:41:12,165 | ^~~~~~~~~ 2021-07-29T09:41:12,165 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,166 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,166 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,166 | ^~~~~~~~~~ 2021-07-29T09:41:12,166 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,166 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,166 | ^~~ 2021-07-29T09:41:12,166 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,167 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,167 | ^~~ 2021-07-29T09:41:12,167 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,167 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,167 | ^~~ 2021-07-29T09:41:12,167 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,167 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,167 | ^~~~~~ 2021-07-29T09:41:12,168 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,168 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T09:41:12,168 | ^~~~ 2021-07-29T09:41:12,168 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,168 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,168 | ^~~~ 2021-07-29T09:41:12,168 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,169 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,169 | ^~~~ 2021-07-29T09:41:12,169 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,169 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,169 | ^~~~ 2021-07-29T09:41:12,169 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,169 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,169 | ^~~~ 2021-07-29T09:41:12,170 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,170 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,170 | ^~~~ 2021-07-29T09:41:12,170 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,170 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T09:41:12,170 | ^~~~ 2021-07-29T09:41:12,170 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,171 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T09:41:12,171 | ^~~~~ 2021-07-29T09:41:12,171 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,171 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T09:41:12,171 | ^~~~~ 2021-07-29T09:41:12,171 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,171 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T09:41:12,171 | ^~~~~~~~~ 2021-07-29T09:41:12,173 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,173 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,174 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T09:41:12,174 | ^~~~~~~~~~~~~ 2021-07-29T09:41:12,174 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,174 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T09:41:12,174 | ^~~~~~~~~~ 2021-07-29T09:41:12,174 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,175 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T09:41:12,175 | ^~~~~~~~~ 2021-07-29T09:41:12,175 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,175 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T09:41:12,175 | ^~~~~~~ 2021-07-29T09:41:12,175 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,175 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,176 | ^~~~~~~~ 2021-07-29T09:41:12,176 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,176 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,176 | ^~~~~~ 2021-07-29T09:41:12,176 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,176 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,176 | ^~~~~~~~~~ 2021-07-29T09:41:12,176 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,177 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,177 | ^~~~~~~~~ 2021-07-29T09:41:12,179 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,179 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,180 394 | static char *kwlist[] = {"numElements", 2021-07-29T09:41:12,180 | ^~~~~~~~~~~~~ 2021-07-29T09:41:12,180 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,180 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,180 | ^~~~ 2021-07-29T09:41:12,180 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,180 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,180 | ^~~~ 2021-07-29T09:41:12,181 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,181 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,181 | ^~~ 2021-07-29T09:41:12,181 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,181 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,181 | ^~~~ 2021-07-29T09:41:12,181 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,181 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,182 | ^~~~ 2021-07-29T09:41:12,182 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,182 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T09:41:12,182 | ^~~~ 2021-07-29T09:41:12,182 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,182 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,182 | ^~~~ 2021-07-29T09:41:12,182 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,183 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,183 | ^~~~ 2021-07-29T09:41:12,183 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,183 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,183 | ^~~~ 2021-07-29T09:41:12,183 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,183 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,183 | ^~~~ 2021-07-29T09:41:12,184 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,184 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,184 | ^~~~ 2021-07-29T09:41:12,184 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,184 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T09:41:12,184 | ^~~~ 2021-07-29T09:41:12,184 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,184 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T09:41:12,185 | ^~~~~~~~~~ 2021-07-29T09:41:12,185 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,185 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T09:41:12,185 | ^~~~~~~~ 2021-07-29T09:41:12,185 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,185 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T09:41:12,185 | ^~~~~~ 2021-07-29T09:41:12,186 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,186 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T09:41:12,186 | ^~~~~~~~~ 2021-07-29T09:41:12,186 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,186 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,186 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,186 | ^~~ 2021-07-29T09:41:12,187 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,187 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,187 | ^~~ 2021-07-29T09:41:12,187 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,187 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,187 | ^~~ 2021-07-29T09:41:12,187 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,187 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,187 | ^~~~ 2021-07-29T09:41:12,188 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,188 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,188 | ^~~~ 2021-07-29T09:41:12,188 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,188 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,188 | ^~~~~~~~~ 2021-07-29T09:41:12,188 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,189 501 | "q", "kappa", 2021-07-29T09:41:12,189 | ^~~ 2021-07-29T09:41:12,189 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,189 501 | "q", "kappa", 2021-07-29T09:41:12,189 | ^~~~~~~ 2021-07-29T09:41:12,189 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,189 502 | "D", "alpha", "R0", 2021-07-29T09:41:12,189 | ^~~ 2021-07-29T09:41:12,189 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,190 502 | "D", "alpha", "R0", 2021-07-29T09:41:12,190 | ^~~~~~~ 2021-07-29T09:41:12,190 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,190 502 | "D", "alpha", "R0", 2021-07-29T09:41:12,190 | ^~~~ 2021-07-29T09:41:12,190 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,190 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,190 | ^~~ 2021-07-29T09:41:12,191 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,191 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,191 | ^~~ 2021-07-29T09:41:12,191 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,191 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,191 | ^~~~ 2021-07-29T09:41:12,191 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,191 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,192 | ^~~~~~~~~~~ 2021-07-29T09:41:12,192 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,192 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,192 | ^~~~~~ 2021-07-29T09:41:12,192 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,192 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,192 | ^~~~~~~ 2021-07-29T09:41:12,192 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,193 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,193 | ^~~~~~~~~~~~~~~ 2021-07-29T09:41:12,193 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,193 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,193 | ^~~~~~~~~ 2021-07-29T09:41:12,193 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,193 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,194 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,194 | ^~~ 2021-07-29T09:41:12,194 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,194 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,194 | ^~~ 2021-07-29T09:41:12,194 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,194 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,194 | ^~~ 2021-07-29T09:41:12,195 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,195 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,195 | ^~~~ 2021-07-29T09:41:12,195 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,195 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,195 | ^~~~ 2021-07-29T09:41:12,195 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,196 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T09:41:12,196 | ^~~~~~~~~ 2021-07-29T09:41:12,196 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,196 566 | "q", "kappa", 2021-07-29T09:41:12,196 | ^~~ 2021-07-29T09:41:12,196 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,196 566 | "q", "kappa", 2021-07-29T09:41:12,196 | ^~~~~~~ 2021-07-29T09:41:12,197 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,197 567 | "D", "alpha", "R0", 2021-07-29T09:41:12,197 | ^~~ 2021-07-29T09:41:12,197 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,197 567 | "D", "alpha", "R0", 2021-07-29T09:41:12,197 | ^~~~~~~ 2021-07-29T09:41:12,197 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,198 567 | "D", "alpha", "R0", 2021-07-29T09:41:12,198 | ^~~~ 2021-07-29T09:41:12,198 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,198 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,198 | ^~~ 2021-07-29T09:41:12,198 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,198 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,198 | ^~~ 2021-07-29T09:41:12,199 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,199 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,199 | ^~~~ 2021-07-29T09:41:12,199 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,199 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T09:41:12,199 | ^~~~~~~~~~~ 2021-07-29T09:41:12,199 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,200 569 | "E", "rho0", "l0", 2021-07-29T09:41:12,200 | ^~~ 2021-07-29T09:41:12,200 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,200 569 | "E", "rho0", "l0", 2021-07-29T09:41:12,200 | ^~~~~~ 2021-07-29T09:41:12,200 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,200 569 | "E", "rho0", "l0", 2021-07-29T09:41:12,200 | ^~~~ 2021-07-29T09:41:12,201 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,201 570 | "B", "C", 2021-07-29T09:41:12,201 | ^~~ 2021-07-29T09:41:12,201 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,201 570 | "B", "C", 2021-07-29T09:41:12,201 | ^~~ 2021-07-29T09:41:12,201 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,202 571 | "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,202 | ^~~~~~~~~~~~~~~ 2021-07-29T09:41:12,202 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,202 571 | "interface_cut", "verbose", NULL}; 2021-07-29T09:41:12,202 | ^~~~~~~~~ 2021-07-29T09:41:12,202 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,202 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,203 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T09:41:12,203 | ^~~~~~~~~~ 2021-07-29T09:41:12,203 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,203 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T09:41:12,203 | ^~~~~~~~~ 2021-07-29T09:41:12,203 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,203 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T09:41:12,203 | ^~~~~~~ 2021-07-29T09:41:12,204 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,204 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T09:41:12,204 | ^~~~~~ 2021-07-29T09:41:12,204 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,204 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,204 | ^~~~~~ 2021-07-29T09:41:12,204 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,205 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,205 | ^~~~~~~~~~ 2021-07-29T09:41:12,205 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,205 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T09:41:12,205 | ^~~~~~~~~ 2021-07-29T09:41:12,205 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:12,206 Interface/PotentialInterface.cpp:710:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,206 710 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T09:41:12,206 | ^~~~~~~ 2021-07-29T09:41:12,206 Interface/PotentialInterface.cpp:710:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:12,206 710 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T09:41:12,206 | ^~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:12,212 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-29T09:41:12,212 Interface/PotentialInterface.cpp:862:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:12,212 862 | for (int i = 0; i < s1.size(); i++) 2021-07-29T09:41:12,212 | ~~^~~~~~~~~~~ 2021-07-29T09:41:14,876 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-29T09:41:16,360 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:16,360 from Interface/PythonConversions.h:30, 2021-07-29T09:41:16,360 from Interface/PythonConversions.cpp:24: 2021-07-29T09:41:16,361 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:41:16,361 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:16,361 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:41:16,361 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:16,361 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:16,361 | ^~ 2021-07-29T09:41:16,370 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:41:16,371 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:16,371 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:41:16,371 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:16,371 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:16,371 | ^~ 2021-07-29T09:41:16,379 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:41:16,380 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:16,380 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:41:16,380 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:16,380 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:16,380 | ^~ 2021-07-29T09:41:16,390 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:41:16,390 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:16,390 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:41:16,391 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:16,391 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:16,391 | ^~ 2021-07-29T09:41:16,400 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:41:16,401 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:16,401 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:41:16,401 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:16,401 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:16,401 | ^~ 2021-07-29T09:41:17,271 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-29T09:41:18,859 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:18,860 from Interface/RDFInterface.h:30, 2021-07-29T09:41:18,860 from Interface/RDFInterface.cpp:27: 2021-07-29T09:41:18,860 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:41:18,860 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:18,860 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:41:18,861 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:18,861 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:18,861 | ^~ 2021-07-29T09:41:18,870 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:41:18,870 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:18,870 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:41:18,871 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:18,871 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:18,871 | ^~ 2021-07-29T09:41:18,878 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:41:18,878 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:18,879 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:41:18,879 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:18,879 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:18,879 | ^~ 2021-07-29T09:41:18,889 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:41:18,889 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:18,889 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:41:18,890 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:18,890 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:18,890 | ^~ 2021-07-29T09:41:18,899 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:41:18,900 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:18,900 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:41:18,900 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:18,900 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:18,900 | ^~ 2021-07-29T09:41:20,817 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-29T09:41:22,562 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:22,562 from Interface/ToolsInterface.cpp:27: 2021-07-29T09:41:22,562 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:41:22,563 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:22,563 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:41:22,563 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:22,563 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:22,563 | ^~ 2021-07-29T09:41:22,574 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:41:22,574 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:22,574 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:41:22,574 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:22,574 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:22,574 | ^~ 2021-07-29T09:41:22,583 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:41:22,583 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:22,584 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:41:22,584 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:22,584 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:22,584 | ^~ 2021-07-29T09:41:22,595 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:41:22,595 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:22,595 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:41:22,595 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:22,595 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:22,596 | ^~ 2021-07-29T09:41:22,606 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:41:22,606 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:41:22,606 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:41:22,606 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:22,607 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:22,607 | ^~ 2021-07-29T09:41:22,805 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-29T09:41:22,805 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:22,805 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T09:41:22,805 | ^~~~~~~ 2021-07-29T09:41:22,806 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:41:22,806 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T09:41:22,806 | ^~~~~~~~ 2021-07-29T09:41:23,535 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-29T09:41:25,177 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-29T09:41:27,028 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-29T09:41:29,075 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-29T09:41:30,642 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-29T09:41:32,305 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-29T09:41:34,390 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-29T09:41:36,125 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-29T09:41:37,553 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-29T09:41:37,899 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-29T09:41:38,805 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-29T09:41:39,355 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-29T09:41:42,806 In file included from /usr/include/c++/10/vector:72, 2021-07-29T09:41:42,806 from PTM/voronoi/cell.hpp:15, 2021-07-29T09:41:42,806 from PTM/voronoi/cell.cpp:16: 2021-07-29T09:41:42,806 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T09:41:42,806 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T09:41:42,806 426 | vector<_Tp, _Alloc>:: 2021-07-29T09:41:42,806 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:42,868 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-29T09:41:42,868 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:41:42,869 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T09:41:42,869 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:43,130 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/AsapMPI.cpp -o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o 2021-07-29T09:41:44,977 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:44,977 from Parallel/AsapMPI.cpp:27: 2021-07-29T09:41:44,978 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-29T09:41:44,978 Parallel/AsapMPI.cpp:313:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:41:44,978 313 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-29T09:41:44,978 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:44,978 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:44,978 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:44,978 | ^~ 2021-07-29T09:41:44,980 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-29T09:41:44,980 Parallel/AsapMPI.cpp:329:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:41:44,980 329 | ASSERT(sendbuf.size() == size); 2021-07-29T09:41:44,980 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:41:44,980 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:44,980 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:44,981 | ^~ 2021-07-29T09:41:46,145 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelAtoms.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o 2021-07-29T09:41:48,147 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:48,147 from Parallel/ParallelAtoms.h:28, 2021-07-29T09:41:48,148 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T09:41:48,148 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-29T09:41:48,148 Parallel/ParallelAtoms.cpp:248:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:41:48,148 248 | (sendlist->size() < nProcessors)); 2021-07-29T09:41:48,148 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-29T09:41:48,148 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:48,148 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:48,148 | ^~ 2021-07-29T09:41:48,184 Parallel/ParallelAtoms.cpp:325:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,185 325 | for (int j = 0; j < arrays.size(); j++) 2021-07-29T09:41:48,185 | ~~^~~~~~~~~~~~~~~ 2021-07-29T09:41:48,186 Parallel/ParallelAtoms.cpp:345:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,186 345 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-29T09:41:48,187 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,187 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:48,188 from Parallel/ParallelAtoms.h:28, 2021-07-29T09:41:48,188 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T09:41:48,188 Parallel/ParallelAtoms.cpp:352:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,188 352 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-29T09:41:48,188 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,188 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:48,188 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:48,188 | ^~ 2021-07-29T09:41:48,234 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-29T09:41:48,234 Parallel/ParallelAtoms.cpp:616:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,234 616 | for (int i = 0; i < array_names.size(); i++) 2021-07-29T09:41:48,234 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,237 Parallel/ParallelAtoms.cpp:637:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,237 637 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T09:41:48,237 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,238 Parallel/ParallelAtoms.cpp:644:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,238 644 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T09:41:48,238 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,246 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:48,246 from Parallel/ParallelAtoms.h:28, 2021-07-29T09:41:48,246 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T09:41:48,246 Parallel/ParallelAtoms.cpp:656:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,246 656 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-29T09:41:48,246 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,247 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:48,247 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:48,247 | ^~ 2021-07-29T09:41:48,248 Parallel/ParallelAtoms.cpp:666:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,248 666 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T09:41:48,248 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,255 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-29T09:41:48,255 Parallel/ParallelAtoms.cpp:730:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,255 730 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T09:41:48,255 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,293 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:48,293 from Parallel/ParallelAtoms.h:28, 2021-07-29T09:41:48,293 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T09:41:48,294 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T09:41:48,294 Parallel/ParallelAtoms.cpp:1117:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:41:48,294 1117 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T09:41:48,294 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,294 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:48,294 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:48,295 | ^~ 2021-07-29T09:41:48,295 Parallel/ParallelAtoms.cpp:1123:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,295 1123 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T09:41:48,295 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,306 In file included from Basics/AsapPython.h:44, 2021-07-29T09:41:48,306 from Parallel/ParallelAtoms.h:28, 2021-07-29T09:41:48,306 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T09:41:48,306 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T09:41:48,306 Parallel/ParallelAtoms.cpp:1150:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:41:48,307 1150 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T09:41:48,307 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:48,307 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:41:48,307 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:41:48,307 | ^~ 2021-07-29T09:41:48,307 Parallel/ParallelAtoms.cpp:1156:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:41:48,308 1156 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T09:41:48,308 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:41:53,572 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelPotential.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o 2021-07-29T09:41:57,501 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/RegularGridDecomposition.cpp -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o 2021-07-29T09:42:02,256 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/AsapParallel.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o 2021-07-29T09:42:04,462 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelAtomsInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o 2021-07-29T09:42:06,011 ParallelInterface/ParallelAtomsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DistributeAtoms(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:06,011 ParallelInterface/ParallelAtomsInterface.cpp:39:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:06,011 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T09:42:06,011 | ^~~~~~~ 2021-07-29T09:42:06,012 ParallelInterface/ParallelAtomsInterface.cpp:39:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:06,012 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T09:42:06,012 | ^~~~~~~~~ 2021-07-29T09:42:06,436 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelNeighborListInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o 2021-07-29T09:42:07,933 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:07,933 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-29T09:42:07,933 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T09:42:07,934 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:42:07,934 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T09:42:07,934 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:07,934 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:07,934 | ^~ 2021-07-29T09:42:07,943 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T09:42:07,944 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:42:07,944 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T09:42:07,944 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:07,944 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:07,944 | ^~ 2021-07-29T09:42:07,952 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T09:42:07,952 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:42:07,953 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T09:42:07,953 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:07,953 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:07,953 | ^~ 2021-07-29T09:42:07,963 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T09:42:07,963 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:42:07,963 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T09:42:07,963 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:07,964 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:07,964 | ^~ 2021-07-29T09:42:07,973 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T09:42:07,973 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:42:07,974 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T09:42:07,974 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:07,974 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:07,974 | ^~ 2021-07-29T09:42:08,165 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:08,165 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:08,165 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:42:08,165 | ^~~~~~ 2021-07-29T09:42:08,165 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:08,166 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:42:08,166 | ^~~~~~~ 2021-07-29T09:42:08,166 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:08,166 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T09:42:08,166 | ^~~~~~~~~~~~~ 2021-07-29T09:42:08,318 In file included from ParallelInterface/ParallelNeighborListInterface.cpp:7: 2021-07-29T09:42:08,319 Interface/Templates.h: At global scope: 2021-07-29T09:42:08,319 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:08,319 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:08,319 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:08,611 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelPotentialInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o 2021-07-29T09:42:10,080 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:10,080 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:10,081 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T09:42:10,081 | ^~~~~~~~~~~ 2021-07-29T09:42:10,081 ParallelInterface/ParallelPotentialInterface.cpp:48:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:10,081 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T09:42:10,081 | ^~~~~~~~~ 2021-07-29T09:42:10,492 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/mpimodule.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o 2021-07-29T09:42:12,497 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_receive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:12,497 ParallelInterface/mpimodule.cpp:193:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,497 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T09:42:12,497 | ^~~ 2021-07-29T09:42:12,498 ParallelInterface/mpimodule.cpp:193:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,498 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T09:42:12,498 | ^~~~~ 2021-07-29T09:42:12,498 ParallelInterface/mpimodule.cpp:193:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,498 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T09:42:12,498 | ^~~~~ 2021-07-29T09:42:12,499 ParallelInterface/mpimodule.cpp:193:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,499 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T09:42:12,499 | ^~~~~~~ 2021-07-29T09:42:12,500 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_probe(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:12,500 ParallelInterface/mpimodule.cpp:241:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,500 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T09:42:12,500 | ^~~~~ 2021-07-29T09:42:12,500 ParallelInterface/mpimodule.cpp:241:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,501 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T09:42:12,501 | ^~~~~ 2021-07-29T09:42:12,501 ParallelInterface/mpimodule.cpp:241:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,501 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T09:42:12,501 | ^~~~~~~ 2021-07-29T09:42:12,501 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_send(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:12,502 ParallelInterface/mpimodule.cpp:289:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,502 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T09:42:12,502 | ^~~ 2021-07-29T09:42:12,502 ParallelInterface/mpimodule.cpp:289:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,502 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T09:42:12,502 | ^~~~~~ 2021-07-29T09:42:12,503 ParallelInterface/mpimodule.cpp:289:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,503 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T09:42:12,503 | ^~~~~ 2021-07-29T09:42:12,503 ParallelInterface/mpimodule.cpp:289:48: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,503 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T09:42:12,503 | ^~~~~~~ 2021-07-29T09:42:12,504 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_sendreceive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T09:42:12,504 ParallelInterface/mpimodule.cpp:331:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,505 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,505 | ^~~ 2021-07-29T09:42:12,505 ParallelInterface/mpimodule.cpp:331:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,505 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,505 | ^~~~~~ 2021-07-29T09:42:12,506 ParallelInterface/mpimodule.cpp:331:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,506 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,506 | ^~~ 2021-07-29T09:42:12,506 ParallelInterface/mpimodule.cpp:331:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,506 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,506 | ^~~~~ 2021-07-29T09:42:12,506 ParallelInterface/mpimodule.cpp:331:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,507 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,507 | ^~~~~~~~~ 2021-07-29T09:42:12,507 ParallelInterface/mpimodule.cpp:331:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,507 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T09:42:12,507 | ^~~~~~~~~ 2021-07-29T09:42:12,515 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_reduce(AsapNS::MPIObject*, PyObject*, PyObject*, MPI_Op, int)’: 2021-07-29T09:42:12,516 ParallelInterface/mpimodule.cpp:567:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,516 567 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T09:42:12,516 | ^~~ 2021-07-29T09:42:12,516 ParallelInterface/mpimodule.cpp:567:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T09:42:12,516 567 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T09:42:12,516 | ^~~~~~ 2021-07-29T09:42:13,780 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-29T09:42:15,713 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-29T09:42:15,713 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,713 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-29T09:42:15,713 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:15,727 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-29T09:42:15,727 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,727 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T09:42:15,727 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-29T09:42:15,728 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,728 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T09:42:15,728 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-29T09:42:15,728 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,728 251 | if (force.capacity() < nSize) 2021-07-29T09:42:15,728 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:42:15,729 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,729 262 | if (Eas.capacity() < nAtoms) 2021-07-29T09:42:15,729 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:15,730 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-29T09:42:15,730 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,730 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-29T09:42:15,730 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T09:42:15,733 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:15,733 from Potentials/EMT.h:34, 2021-07-29T09:42:15,734 from Potentials/EMT.cpp:34: 2021-07-29T09:42:15,734 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-29T09:42:15,734 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,734 324 | ASSERT(nelements == elements_set.size()); 2021-07-29T09:42:15,734 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:15,734 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,734 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,735 | ^~ 2021-07-29T09:42:15,751 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-29T09:42:15,751 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,751 538 | ASSERT(Epot.size() == nAtoms); 2021-07-29T09:42:15,751 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:42:15,752 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,752 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,752 | ^~ 2021-07-29T09:42:15,787 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T09:42:15,787 Potentials/EMT.cpp:1259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,787 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T09:42:15,787 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:42:15,788 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,788 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,788 | ^~ 2021-07-29T09:42:15,788 Potentials/EMT.cpp:1259:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,788 1259 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T09:42:15,788 | ~~~~~~~^~~~~~~~~~~~ 2021-07-29T09:42:15,788 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,789 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,789 | ^~ 2021-07-29T09:42:15,789 Potentials/EMT.cpp:1260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:15,789 1260 | nSize == dEds.size()); 2021-07-29T09:42:15,789 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-29T09:42:15,789 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,789 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,789 | ^~ 2021-07-29T09:42:15,800 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-29T09:42:15,800 Potentials/EMT.cpp:1425:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,800 1425 | ASSERT(virials.size() == nSize); 2021-07-29T09:42:15,800 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:15,800 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,801 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,801 | ^~ 2021-07-29T09:42:15,809 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-29T09:42:15,809 Potentials/EMT.cpp:1544:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,809 1544 | ASSERT(this->force.size() >= nSize); 2021-07-29T09:42:15,810 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:15,810 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,810 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,810 | ^~ 2021-07-29T09:42:15,810 Potentials/EMT.cpp:1547:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:15,810 1547 | ASSERT(virials.size() == nSize); 2021-07-29T09:42:15,811 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:15,811 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:15,811 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:15,811 | ^~ 2021-07-29T09:42:16,366 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:16,367 from Potentials/EMT.cpp:39: 2021-07-29T09:42:16,367 Interface/Templates.h: At global scope: 2021-07-29T09:42:16,367 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:16,367 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:16,367 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:22,395 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-29T09:42:24,287 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:24,287 from Potentials/EMT.h:34, 2021-07-29T09:42:24,288 from Potentials/EMT2013.h:13, 2021-07-29T09:42:24,288 from Potentials/EMT2013.cpp:8: 2021-07-29T09:42:24,288 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-29T09:42:24,288 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:24,288 105 | ASSERT(nelements == elements_set.size()); 2021-07-29T09:42:24,288 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:24,288 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:24,288 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:24,289 | ^~ 2021-07-29T09:42:24,325 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T09:42:24,325 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:24,325 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T09:42:24,325 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:24,326 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:24,326 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:24,326 | ^~ 2021-07-29T09:42:24,326 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:24,326 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T09:42:24,326 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:24,327 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:24,327 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:24,327 | ^~ 2021-07-29T09:42:24,327 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:24,327 569 | nSize == this->dEds.size()); 2021-07-29T09:42:24,327 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:24,327 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:24,327 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:24,328 | ^~ 2021-07-29T09:42:24,698 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:24,699 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:42:24,699 from Potentials/EMT2013.cpp:13: 2021-07-29T09:42:24,699 Interface/Templates.h: At global scope: 2021-07-29T09:42:24,699 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:24,699 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:24,699 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:27,004 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-29T09:42:29,465 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-29T09:42:31,706 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-29T09:42:33,681 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-29T09:42:35,544 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-29T09:42:35,544 Potentials/LennardJones.cpp:376:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:35,544 376 | if (nAtoms != virials.size()) 2021-07-29T09:42:35,544 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:42:35,551 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:35,551 from Potentials/LennardJones.cpp:43: 2021-07-29T09:42:35,551 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-29T09:42:35,551 Potentials/LennardJones.cpp:486:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:35,551 486 | ASSERT(forces.size() == nSize); 2021-07-29T09:42:35,552 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:35,552 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:35,552 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:35,552 | ^~ 2021-07-29T09:42:35,556 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-29T09:42:35,557 Potentials/LennardJones.cpp:582:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:35,557 582 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T09:42:35,557 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:42:35,557 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:35,557 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:35,557 | ^~ 2021-07-29T09:42:35,841 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:35,842 from Basics/NeighborList.h:37, 2021-07-29T09:42:35,842 from Potentials/LennardJones.cpp:46: 2021-07-29T09:42:35,842 Interface/Templates.h: At global scope: 2021-07-29T09:42:35,842 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:35,842 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:35,842 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:38,211 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-29T09:42:40,076 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:40,076 from Potentials/MetalOxideInterface.cpp:29: 2021-07-29T09:42:40,076 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-29T09:42:40,077 Potentials/MetalOxideInterface.cpp:316:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:40,077 316 | ASSERT(forces.size() == nSize); 2021-07-29T09:42:40,077 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:40,077 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:40,077 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:40,077 | ^~ 2021-07-29T09:42:40,093 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-29T09:42:40,093 Potentials/MetalOxideInterface.cpp:571:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:40,094 571 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T09:42:40,094 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:42:40,094 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:40,094 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:40,094 | ^~ 2021-07-29T09:42:40,433 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:40,433 from Basics/NeighborList.h:37, 2021-07-29T09:42:40,433 from Potentials/MetalOxideInterface.cpp:32: 2021-07-29T09:42:40,433 Interface/Templates.h: At global scope: 2021-07-29T09:42:40,433 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:40,433 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:40,434 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:43,645 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-29T09:42:45,497 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:45,497 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-29T09:42:45,498 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-29T09:42:45,498 Potentials/MetalOxideInterface2.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:45,498 330 | ASSERT(forces.size() == nSize); 2021-07-29T09:42:45,498 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:42:45,498 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:45,498 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:45,498 | ^~ 2021-07-29T09:42:45,514 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-29T09:42:45,514 Potentials/MetalOxideInterface2.cpp:552:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:45,514 552 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T09:42:45,515 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:42:45,515 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:45,515 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:45,515 | ^~ 2021-07-29T09:42:45,879 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:45,879 from Basics/NeighborList.h:37, 2021-07-29T09:42:45,879 from Potentials/MetalOxideInterface2.cpp:46: 2021-07-29T09:42:45,879 Interface/Templates.h: At global scope: 2021-07-29T09:42:45,879 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:45,879 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:45,880 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:49,259 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-29T09:42:51,418 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:51,418 from Basics/NeighborList.h:37, 2021-07-29T09:42:51,418 from Potentials/MonteCarloEMT.cpp:25: 2021-07-29T09:42:51,418 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:51,418 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:51,419 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:53,109 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-29T09:42:54,978 In file included from Basics/AsapPython.h:44, 2021-07-29T09:42:54,978 from Potentials/Morse.cpp:43: 2021-07-29T09:42:54,979 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-29T09:42:54,979 Potentials/Morse.cpp:472:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:42:54,979 472 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T09:42:54,979 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:42:54,979 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:42:54,979 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:42:54,980 | ^~ 2021-07-29T09:42:55,262 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:42:55,262 from Basics/NeighborList.h:37, 2021-07-29T09:42:55,262 from Potentials/Morse.cpp:46: 2021-07-29T09:42:55,262 Interface/Templates.h: At global scope: 2021-07-29T09:42:55,263 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:42:55,263 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:42:55,263 | ^~~~~~~~~~~~~~ 2021-07-29T09:42:56,954 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T09:42:56,954 from Potentials/Morse.cpp:54: 2021-07-29T09:42:56,955 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T09:42:56,955 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,955 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-29T09:42:56,955 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:56,955 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,955 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,956 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,976 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-29T09:42:56,977 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,977 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-29T09:42:56,977 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:56,992 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T09:42:56,992 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:56,993 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-29T09:42:56,993 | ^~~~~~~~~~~~~~~~ 2021-07-29T09:42:56,993 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,022 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-29T09:42:57,022 from /usr/include/c++/10/algorithm:62, 2021-07-29T09:42:57,022 from Potentials/Morse.cpp:54: 2021-07-29T09:42:57,022 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T09:42:57,022 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,022 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-29T09:42:57,023 | ^~~~~~~~~~~~~ 2021-07-29T09:42:57,062 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T09:42:57,063 from Potentials/Morse.cpp:54: 2021-07-29T09:42:57,063 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T09:42:57,063 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,063 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-29T09:42:57,063 | ^~~~~~~~~~~~~ 2021-07-29T09:42:57,063 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,063 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,064 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,097 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T09:42:57,097 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,097 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-29T09:42:57,097 | ^~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,098 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,098 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,098 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,098 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-29T09:42:57,098 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,098 1925 | __comp); 2021-07-29T09:42:57,098 | ~~~~~~~ 2021-07-29T09:42:57,098 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,099 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,099 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-29T09:42:57,099 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,099 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,099 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-29T09:42:57,099 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,137 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-29T09:42:57,138 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,138 1974 | std::__introsort_loop(__first, __last, 2021-07-29T09:42:57,138 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,138 1975 | std::__lg(__last - __first) * 2, 2021-07-29T09:42:57,138 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,138 1976 | __comp); 2021-07-29T09:42:57,138 | ~~~~~~~ 2021-07-29T09:42:57,139 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,139 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-29T09:42:57,139 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,139 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T09:42:57,139 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-29T09:42:57,139 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:42:57,523 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-29T09:42:59,051 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-29T09:42:59,051 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:42:59,052 52 | for (int i = 0; i < virials.size(); i++) 2021-07-29T09:42:59,052 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T09:42:59,469 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-29T09:43:01,324 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-29T09:43:01,325 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:43:01,325 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T09:43:01,325 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T09:43:01,325 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T09:43:01,326 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T09:43:01,326 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-29T09:43:01,649 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:01,650 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:43:01,650 from Potentials/RGL.cpp:5: 2021-07-29T09:43:01,650 Interface/Templates.h: At global scope: 2021-07-29T09:43:01,650 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:01,650 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:01,650 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:04,069 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-29T09:43:05,948 In file included from Basics/AsapPython.h:44, 2021-07-29T09:43:05,948 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-29T09:43:05,948 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-29T09:43:05,949 Potentials/RahmanStillingerLemberg.cpp:355:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:43:05,949 355 | ASSERT(forces.size() == nSize); 2021-07-29T09:43:05,949 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T09:43:05,949 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:43:05,949 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:43:05,949 | ^~ 2021-07-29T09:43:05,958 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-29T09:43:05,958 Potentials/RahmanStillingerLemberg.cpp:452:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:43:05,958 452 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T09:43:05,958 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T09:43:05,958 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:43:05,959 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:43:05,959 | ^~ 2021-07-29T09:43:06,244 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:06,244 from Basics/NeighborList.h:37, 2021-07-29T09:43:06,245 from Potentials/RahmanStillingerLemberg.cpp:46: 2021-07-29T09:43:06,245 Interface/Templates.h: At global scope: 2021-07-29T09:43:06,245 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:06,245 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:06,245 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:08,791 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-29T09:43:10,464 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-29T09:43:10,465 Tools/CNA.cpp:54:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:43:10,465 54 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-29T09:43:10,465 | ~~~^~~~~~~~ 2021-07-29T09:43:10,468 Tools/CNA.cpp:62:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-29T09:43:10,468 62 | if (a1 < a2) 2021-07-29T09:43:10,468 | ~~~^~~~ 2021-07-29T09:43:10,469 Tools/CNA.cpp:82:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T09:43:10,469 82 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-29T09:43:10,469 | ~~~^~~~ 2021-07-29T09:43:10,697 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:10,697 from Basics/NeighborList.h:37, 2021-07-29T09:43:10,697 from Tools/CNA.cpp:27: 2021-07-29T09:43:10,697 Interface/Templates.h: At global scope: 2021-07-29T09:43:10,697 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:10,697 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:10,698 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:11,523 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-29T09:43:13,231 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:13,231 from Tools/CoordinationNumbers.cpp:27: 2021-07-29T09:43:13,232 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:13,232 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:13,232 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:13,822 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-29T09:43:16,519 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:16,519 from Basics/NeighborList.h:37, 2021-07-29T09:43:16,519 from Tools/FullCNA.cpp:27: 2021-07-29T09:43:16,519 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:16,519 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:16,520 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:18,326 In file included from /usr/include/c++/10/map:60, 2021-07-29T09:43:18,326 from Tools/FullCNA.h:35, 2021-07-29T09:43:18,326 from Tools/FullCNA.cpp:24: 2021-07-29T09:43:18,326 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T09:43:18,326 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T09:43:18,327 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T09:43:18,327 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,692 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T09:43:18,692 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T09:43:18,692 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T09:43:18,692 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,737 In file included from /usr/include/c++/10/map:61, 2021-07-29T09:43:18,738 from Tools/FullCNA.h:35, 2021-07-29T09:43:18,738 from Tools/FullCNA.cpp:24: 2021-07-29T09:43:18,738 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-29T09:43:18,738 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T09:43:18,738 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T09:43:18,738 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,738 502 | std::tuple(__k), 2021-07-29T09:43:18,738 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,739 503 | std::tuple<>()); 2021-07-29T09:43:18,739 | ~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,739 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T09:43:18,739 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T09:43:18,739 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,739 502 | std::tuple(__k), 2021-07-29T09:43:18,739 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T09:43:18,740 503 | std::tuple<>()); 2021-07-29T09:43:18,740 | ~~~~~~~~~~~~~~~ 2021-07-29T09:43:19,655 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-29T09:43:21,531 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:21,531 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:43:21,531 from Tools/GetNeighborList.cpp:28: 2021-07-29T09:43:21,531 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:21,531 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:21,532 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:21,985 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-29T09:43:23,689 In file included from Basics/AsapPython.h:44, 2021-07-29T09:43:23,689 from Tools/RawRadialDistribution.cpp:29: 2021-07-29T09:43:23,689 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-29T09:43:23,689 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:43:23,690 55 | ASSERT(result.size() == nGroups); 2021-07-29T09:43:23,690 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T09:43:23,690 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:43:23,690 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:43:23,690 | ^~ 2021-07-29T09:43:23,698 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T09:43:23,698 56 | ASSERT(counts.size() == nGroups); 2021-07-29T09:43:23,699 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T09:43:23,699 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T09:43:23,699 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T09:43:23,699 | ^~ 2021-07-29T09:43:24,121 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:24,122 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:43:24,122 from Tools/RawRadialDistribution.cpp:33: 2021-07-29T09:43:24,122 Interface/Templates.h: At global scope: 2021-07-29T09:43:24,122 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:24,122 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:24,122 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:25,284 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-29T09:43:27,126 In file included from Basics/NeighborLocator.h:39, 2021-07-29T09:43:27,126 from Basics/NeighborCellLocator.h:38, 2021-07-29T09:43:27,126 from Tools/SecondaryNeighborLocator.h:43, 2021-07-29T09:43:27,126 from Tools/SecondaryNeighborLocator.cpp:40: 2021-07-29T09:43:27,126 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T09:43:27,126 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T09:43:27,126 | ^~~~~~~~~~~~~~ 2021-07-29T09:43:27,885 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels38_p.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels38_p.o 2021-07-29T09:43:28,126 VersionInfo_autogen/version_piwheels38_p.cpp:15:63: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-29T09:43:28,126 15 | return ("ASAP version 3.12.3 parallel, compiled " __DATE__ " " __TIME__ " on piwheels38 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T09:43:28,126 | ^~~~~~~~ 2021-07-29T09:43:28,154 VersionInfo_autogen/version_piwheels38_p.cpp:15:76: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-29T09:43:28,154 15 | return ("ASAP version 3.12.3 parallel, compiled " __DATE__ " " __TIME__ " on piwheels38 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T09:43:28,154 | ^~~~~~~~ 2021-07-29T09:43:28,792 mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels38_p.o -lm -o build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so 2021-07-29T09:43:30,468 running build_scripts 2021-07-29T09:43:30,469 creating build/scripts-3.9 2021-07-29T09:43:30,470 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-29T09:43:30,472 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-29T09:43:30,474 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-29T09:43:30,475 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-29T09:43:30,484 installing to build/bdist.linux-armv7l/wheel 2021-07-29T09:43:30,484 running install 2021-07-29T09:43:30,486 running install_lib 2021-07-29T09:43:30,490 creating build/bdist.linux-armv7l 2021-07-29T09:43:30,491 creating build/bdist.linux-armv7l/wheel 2021-07-29T09:43:30,493 copying build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-29T09:43:30,759 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,759 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,762 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,763 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,765 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,766 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,768 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,771 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T09:43:30,772 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T09:43:30,774 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T09:43:30,776 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T09:43:30,780 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T09:43:30,781 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T09:43:30,783 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T09:43:30,786 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T09:43:30,789 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T09:43:30,791 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,795 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,796 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,798 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,800 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,803 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,805 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T09:43:30,810 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,811 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,814 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,816 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,818 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,821 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,823 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,825 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,827 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T09:43:30,830 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T09:43:30,831 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T09:43:30,833 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T09:43:30,836 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T09:43:30,838 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T09:43:30,840 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,842 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,845 creating build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T09:43:30,846 copying build/lib.linux-armv7l-3.9/asap3/visualize/fieldplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T09:43:30,849 copying build/lib.linux-armv7l-3.9/asap3/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T09:43:30,851 copying build/lib.linux-armv7l-3.9/asap3/visualize/primiplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T09:43:30,854 copying build/lib.linux-armv7l-3.9/asap3/visualize/colortable.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T09:43:30,858 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,859 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,861 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,864 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,867 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,869 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,870 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,872 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,876 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,877 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,879 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,882 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,884 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,887 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,889 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,893 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,896 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,899 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,902 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,904 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T09:43:30,909 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,912 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,914 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T09:43:30,918 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,919 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,921 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,923 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,926 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,929 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,931 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,934 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,937 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,939 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T09:43:30,942 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,946 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,949 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,952 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:30,955 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,956 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,958 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,961 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,962 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,966 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,968 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,971 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,974 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,977 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,980 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,983 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,985 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T09:43:30,988 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,992 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,994 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T09:43:30,997 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:31,001 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,003 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,005 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,009 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,012 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,015 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,018 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,020 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,023 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,025 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,028 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,032 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,034 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,037 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,040 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T09:43:31,042 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T09:43:31,044 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T09:43:31,048 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:31,050 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:31,053 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T09:43:31,056 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,058 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,060 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,062 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,065 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,068 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,071 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,074 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,077 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,079 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T09:43:31,084 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T09:43:31,085 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T09:43:31,088 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T09:43:31,091 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T09:43:31,093 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T09:43:31,096 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:43:31,098 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:43:31,101 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:43:31,104 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T09:43:31,107 running install_egg_info 2021-07-29T09:43:31,135 running egg_info 2021-07-29T09:43:31,136 creating asap3.egg-info 2021-07-29T09:43:31,137 writing asap3.egg-info/PKG-INFO 2021-07-29T09:43:31,139 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-29T09:43:31,142 writing top-level names to asap3.egg-info/top_level.txt 2021-07-29T09:43:31,144 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T09:43:31,200 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T09:43:31,202 reading manifest template 'MANIFEST.in' 2021-07-29T09:43:31,320 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T09:43:31,321 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T09:43:31,321 adding license file 'LICENSE' 2021-07-29T09:43:31,322 adding license file 'LICENSE.LESSER' 2021-07-29T09:43:31,348 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T09:43:31,351 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.12.3-py3.9.egg-info 2021-07-29T09:43:31,362 running install_scripts 2021-07-29T09:43:31,453 creating build/bdist.linux-armv7l/wheel/asap3-3.12.3.data 2021-07-29T09:43:31,453 creating build/bdist.linux-armv7l/wheel/asap3-3.12.3.data/scripts 2021-07-29T09:43:31,455 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.12.3.data/scripts 2021-07-29T09:43:31,457 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.12.3.data/scripts 2021-07-29T09:43:31,460 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.3.data/scripts/asap-sbatch to 755 2021-07-29T09:43:31,460 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.3.data/scripts/asap-qsub to 755 2021-07-29T09:43:31,475 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-29T09:43:31,476 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T09:43:31,486 creating build/bdist.linux-armv7l/wheel/asap3-3.12.3.dist-info/WHEEL 2021-07-29T09:43:31,489 creating '/tmp/pip-wheel-rbvpf_74/asap3-3.12.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T09:43:33,807 adding '_asap.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T09:43:33,903 adding 'asap3/EMT2011Parameters.py' 2021-07-29T09:43:33,907 adding 'asap3/EMT2011_py.py' 2021-07-29T09:43:33,909 adding 'asap3/EMT2013Parameters.py' 2021-07-29T09:43:33,910 adding 'asap3/GuptaParameters.py' 2021-07-29T09:43:33,912 adding 'asap3/__init__.py' 2021-07-29T09:43:33,914 adding 'asap3/constraints.py' 2021-07-29T09:43:33,915 adding 'asap3/fixepydoc.py' 2021-07-29T09:43:33,917 adding 'asap3/memory.py' 2021-07-29T09:43:33,919 adding 'asap3/mpi.py' 2021-07-29T09:43:33,920 adding 'asap3/testtools.py' 2021-07-29T09:43:33,922 adding 'asap3/timing.py' 2021-07-29T09:43:33,924 adding 'asap3/version.py' 2021-07-29T09:43:33,928 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-29T09:43:33,929 adding 'asap3/Internal/Builtins.py' 2021-07-29T09:43:33,931 adding 'asap3/Internal/CheckArray.py' 2021-07-29T09:43:33,933 adding 'asap3/Internal/Collector.py' 2021-07-29T09:43:33,935 adding 'asap3/Internal/EMTParameters.py' 2021-07-29T09:43:33,936 adding 'asap3/Internal/ListOfElements.py' 2021-07-29T09:43:33,938 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-29T09:43:33,941 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-29T09:43:33,944 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-29T09:43:33,946 adding 'asap3/Internal/Subject.py' 2021-07-29T09:43:33,947 adding 'asap3/Internal/Threads.py' 2021-07-29T09:43:33,949 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-29T09:43:33,951 adding 'asap3/Internal/__init__.py' 2021-07-29T09:43:33,952 adding 'asap3/Internal/checkversion.py' 2021-07-29T09:43:33,954 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-29T09:43:33,957 adding 'asap3/MonteCarlo/Base.py' 2021-07-29T09:43:33,959 adding 'asap3/MonteCarlo/Basin.py' 2021-07-29T09:43:33,960 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-29T09:43:33,962 adding 'asap3/MonteCarlo/Start.py' 2021-07-29T09:43:33,963 adding 'asap3/MonteCarlo/__init__.py' 2021-07-29T09:43:33,966 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-29T09:43:33,969 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-29T09:43:33,970 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-29T09:43:33,973 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-29T09:43:33,975 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-29T09:43:33,977 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-29T09:43:33,979 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-29T09:43:33,981 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-29T09:43:33,983 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-29T09:43:33,985 adding 'asap3/Tools/ElasticConstants.py' 2021-07-29T09:43:33,987 adding 'asap3/Tools/MaterialProperties.py' 2021-07-29T09:43:33,989 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-29T09:43:33,991 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-29T09:43:33,993 adding 'asap3/Tools/Timing.py' 2021-07-29T09:43:33,994 adding 'asap3/Tools/__init__.py' 2021-07-29T09:43:33,996 adding 'asap3/Tools/niflheim.py' 2021-07-29T09:43:33,999 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-29T09:43:34,000 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-29T09:43:34,003 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-29T09:43:34,005 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-29T09:43:34,009 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-29T09:43:34,011 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-29T09:43:34,013 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-29T09:43:34,021 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-29T09:43:34,023 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-29T09:43:34,026 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-29T09:43:34,027 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-29T09:43:34,030 adding 'asap3/analysis/__init__.py' 2021-07-29T09:43:34,031 adding 'asap3/analysis/averagepositions.py' 2021-07-29T09:43:34,033 adding 'asap3/analysis/clusterposition.py' 2021-07-29T09:43:34,035 adding 'asap3/analysis/cutcluster.py' 2021-07-29T09:43:34,037 adding 'asap3/analysis/findcluster.py' 2021-07-29T09:43:34,039 adding 'asap3/analysis/localstructure.py' 2021-07-29T09:43:34,041 adding 'asap3/analysis/particle.py' 2021-07-29T09:43:34,044 adding 'asap3/analysis/ptm.py' 2021-07-29T09:43:34,046 adding 'asap3/analysis/rdf.py' 2021-07-29T09:43:34,049 adding 'asap3/io/ReadOldFiles.py' 2021-07-29T09:43:34,050 adding 'asap3/io/__init__.py' 2021-07-29T09:43:34,053 adding 'asap3/io/bundletrajectory.py' 2021-07-29T09:43:34,055 adding 'asap3/io/cpu_setup.py' 2021-07-29T09:43:34,057 adding 'asap3/io/trajectory.py' 2021-07-29T09:43:34,059 adding 'asap3/md/__init__.py' 2021-07-29T09:43:34,061 adding 'asap3/md/langevin.py' 2021-07-29T09:43:34,063 adding 'asap3/md/md.py' 2021-07-29T09:43:34,064 adding 'asap3/md/npt.py' 2021-07-29T09:43:34,066 adding 'asap3/md/nptberendsen.py' 2021-07-29T09:43:34,067 adding 'asap3/md/nvtberendsen.py' 2021-07-29T09:43:34,069 adding 'asap3/md/velocitydistribution.py' 2021-07-29T09:43:34,071 adding 'asap3/md/verlet.py' 2021-07-29T09:43:34,073 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-29T09:43:34,074 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-29T09:43:34,076 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-29T09:43:34,078 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-29T09:43:34,081 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-29T09:43:34,083 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-29T09:43:34,084 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-29T09:43:34,086 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-29T09:43:34,088 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-29T09:43:34,090 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-29T09:43:34,091 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-29T09:43:34,093 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-29T09:43:34,095 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-29T09:43:34,097 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-29T09:43:34,102 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-29T09:43:34,105 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-29T09:43:34,108 adding 'asap3/optimize/__init__.py' 2021-07-29T09:43:34,109 adding 'asap3/optimize/fire.py' 2021-07-29T09:43:34,111 adding 'asap3/optimize/mdmin.py' 2021-07-29T09:43:34,112 adding 'asap3/optimize/optimize.py' 2021-07-29T09:43:34,114 adding 'asap3/setup/VelocityDistribution.py' 2021-07-29T09:43:34,116 adding 'asap3/setup/__init__.py' 2021-07-29T09:43:34,118 adding 'asap3/setup/dislocation.py' 2021-07-29T09:43:34,120 adding 'asap3/setup/displacementfield.py' 2021-07-29T09:43:34,122 adding 'asap3/setup/multidislocation.py' 2021-07-29T09:43:34,124 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-29T09:43:34,126 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-29T09:43:34,128 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-29T09:43:34,130 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-29T09:43:34,133 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-29T09:43:34,135 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-29T09:43:34,138 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-29T09:43:34,140 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-29T09:43:34,142 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-29T09:43:34,144 adding 'asap3/visualize/__init__.py' 2021-07-29T09:43:34,149 adding 'asap3/visualize/colortable.py' 2021-07-29T09:43:34,152 adding 'asap3/visualize/fieldplotter.py' 2021-07-29T09:43:34,157 adding 'asap3/visualize/primiplotter.py' 2021-07-29T09:43:34,160 adding 'asap3-3.12.3.data/scripts/asap-qsub' 2021-07-29T09:43:34,162 adding 'asap3-3.12.3.data/scripts/asap-sbatch' 2021-07-29T09:43:34,170 adding 'asap3-3.12.3.dist-info/LICENSE' 2021-07-29T09:43:34,173 adding 'asap3-3.12.3.dist-info/LICENSE.LESSER' 2021-07-29T09:43:34,174 adding 'asap3-3.12.3.dist-info/METADATA' 2021-07-29T09:43:34,175 adding 'asap3-3.12.3.dist-info/WHEEL' 2021-07-29T09:43:34,177 adding 'asap3-3.12.3.dist-info/top_level.txt' 2021-07-29T09:43:34,179 adding 'asap3-3.12.3.dist-info/RECORD' 2021-07-29T09:43:34,253 removing build/bdist.linux-armv7l/wheel 2021-07-29T09:43:34,425 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-29T09:43:34,486 Created wheel for asap3: filename=asap3-3.12.3-cp39-cp39-linux_armv7l.whl size=4714131 sha256=6e2530a20a19838d5eed8811ec092fcf0389bedef51a3252af6f7ddf7355abc9 2021-07-29T09:43:34,487 Stored in directory: /tmp/pip-ephem-wheel-cache-svmy5_4o/wheels/e2/b7/b2/cb3c6ddc8e2e0aec5036fd2bd2391a3aeefb9057f3f2ce57d9 2021-07-29T09:43:34,503 Successfully built asap3 2021-07-29T09:43:34,664 Removed build tracker: '/tmp/pip-req-tracker-__jpi94o'