2021-07-29T11:54:53,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-_zob9fm0
2021-07-29T11:54:53,791 Created temporary directory: /tmp/pip-req-tracker-eoalcc6k
2021-07-29T11:54:53,792 Initialized build tracking at /tmp/pip-req-tracker-eoalcc6k
2021-07-29T11:54:53,792 Created build tracker: /tmp/pip-req-tracker-eoalcc6k
2021-07-29T11:54:53,792 Entered build tracker: /tmp/pip-req-tracker-eoalcc6k
2021-07-29T11:54:53,793 Created temporary directory: /tmp/pip-wheel-k0597sbj
2021-07-29T11:54:53,825 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T11:54:53,825 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T11:54:53,826 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T11:54:53,826 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T11:54:53,826 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T11:54:53,829 WARNING: Location '/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T11:54:53,829 WARNING: Location 't/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T11:54:53,830 WARNING: Location 'm/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T11:54:53,830 WARNING: Location 'p/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T11:54:53,830 1 location(s) to search for versions of cytohmm:
2021-07-29T11:54:53,830 * https://pypi.org/simple/cytohmm/
2021-07-29T11:54:53,831 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-07-29T11:54:53,831 Getting page https://pypi.org/simple/cytohmm/
2021-07-29T11:54:53,832 Found index url https://pypi.org/simple
2021-07-29T11:54:53,927   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-07-29T11:54:53,927   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-07-29T11:54:53,927   Found link https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 (from https://pypi.org/simple/cytohmm/), version: 0.0.3
2021-07-29T11:54:53,928   Found link https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.0
2021-07-29T11:54:53,929   Found link https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.1
2021-07-29T11:54:53,929 Skipping link: not a file: https://pypi.org/simple/cytohmm/
2021-07-29T11:54:53,948 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-07-29T11:54:53,966 Collecting cytohmm==0.1.0
2021-07-29T11:54:53,967   Created temporary directory: /tmp/pip-unpack-riur356v
2021-07-29T11:54:54,142   Downloading cytohmm-0.1.0.tar.gz (103 kB)
2021-07-29T11:54:54,250   Added cytohmm==0.1.0 from https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 to build tracker '/tmp/pip-req-tracker-eoalcc6k'
2021-07-29T11:54:54,251     Running setup.py (path:/tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3/setup.py) egg_info for package cytohmm
2021-07-29T11:54:54,252     Created temporary directory: /tmp/pip-pip-egg-info-7vxp_jte
2021-07-29T11:54:54,252     Running command python setup.py egg_info
2021-07-29T11:54:56,005     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3/src/cytohmm/likelihood.pyx
2021-07-29T11:54:56,006       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T11:54:57,628     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3/src/cytohmm/markov_chain.pyx
2021-07-29T11:54:57,628       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T11:54:59,493     Compiling src/cytohmm/markov_chain.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T11:54:59,493     Compiling src/cytohmm/likelihood.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T11:54:59,493     [1/2] Cythonizing src/cytohmm/likelihood.pyx
2021-07-29T11:54:59,493     [2/2] Cythonizing src/cytohmm/markov_chain.pyx
2021-07-29T11:54:59,668     running egg_info
2021-07-29T11:54:59,671     creating /tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info
2021-07-29T11:54:59,672     writing /tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/PKG-INFO
2021-07-29T11:54:59,675     writing dependency_links to /tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/dependency_links.txt
2021-07-29T11:54:59,678     writing requirements to /tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/requires.txt
2021-07-29T11:54:59,679     writing top-level names to /tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/top_level.txt
2021-07-29T11:54:59,681     writing manifest file '/tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/SOURCES.txt'
2021-07-29T11:54:59,823     reading manifest file '/tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/SOURCES.txt'
2021-07-29T11:54:59,825     reading manifest template 'MANIFEST.in'
2021-07-29T11:54:59,834     adding license file 'LICENSE'
2021-07-29T11:54:59,837     writing manifest file '/tmp/pip-pip-egg-info-7vxp_jte/cytohmm.egg-info/SOURCES.txt'
2021-07-29T11:55:00,042   Source in /tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3 has version 0.1.0, which satisfies requirement cytohmm==0.1.0 from https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253
2021-07-29T11:55:00,043   Removed cytohmm==0.1.0 from https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 from build tracker '/tmp/pip-req-tracker-eoalcc6k'
2021-07-29T11:55:00,050 Created temporary directory: /tmp/pip-unpack-c7tgjqm2
2021-07-29T11:55:00,050 Building wheels for collected packages: cytohmm
2021-07-29T11:55:00,055   Created temporary directory: /tmp/pip-wheel-4voh0_17
2021-07-29T11:55:00,055   Building wheel for cytohmm (setup.py): started
2021-07-29T11:55:00,056   Destination directory: /tmp/pip-wheel-4voh0_17
2021-07-29T11:55:00,056   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-k0597sbj/cytohmm_138ba144a5824fefb81eb4d0b91e77d3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4voh0_17
2021-07-29T11:55:01,878   running bdist_wheel
2021-07-29T11:55:01,883   running build
2021-07-29T11:55:01,883   running build_py
2021-07-29T11:55:02,019   creating build
2021-07-29T11:55:02,020   creating build/lib.linux-armv7l-3.9
2021-07-29T11:55:02,021   creating build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T11:55:02,022   copying src/cytohmm/__init__.py -> build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T11:55:02,024   copying src/cytohmm/sequence_segmenter.py -> build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T11:55:02,026   running build_ext
2021-07-29T11:55:02,031   building 'cytohmm.markov_chain' extension
2021-07-29T11:55:02,032   creating build/temp.linux-armv7l-3.9
2021-07-29T11:55:02,032   creating build/temp.linux-armv7l-3.9/src
2021-07-29T11:55:02,033   creating build/temp.linux-armv7l-3.9/src/cytohmm
2021-07-29T11:55:02,033   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/cytohmm/markov_chain.c -o build/temp.linux-armv7l-3.9/src/cytohmm/markov_chain.o
2021-07-29T11:55:02,412   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T11:55:02,413                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T11:55:02,413                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T11:55:02,413                    from src/cytohmm/markov_chain.c:634:
2021-07-29T11:55:02,413   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T11:55:02,414      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T11:55:02,414         |  ^~~~~~~
2021-07-29T11:55:12,601   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cytohmm/markov_chain.o -o build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so
2021-07-29T11:55:12,746   building 'cytohmm.likelihood' extension
2021-07-29T11:55:12,747   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/cytohmm/likelihood.c -o build/temp.linux-armv7l-3.9/src/cytohmm/likelihood.o
2021-07-29T11:55:13,128   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T11:55:13,128                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T11:55:13,128                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T11:55:13,129                    from src/cytohmm/likelihood.c:634:
2021-07-29T11:55:13,129   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T11:55:13,129      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T11:55:13,129         |  ^~~~~~~
2021-07-29T11:55:19,744   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cytohmm/likelihood.o -o build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so
2021-07-29T11:55:19,881   installing to build/bdist.linux-armv7l/wheel
2021-07-29T11:55:19,881   running install
2021-07-29T11:55:19,883   running install_lib
2021-07-29T11:55:19,887   creating build/bdist.linux-armv7l
2021-07-29T11:55:19,887   creating build/bdist.linux-armv7l/wheel
2021-07-29T11:55:19,889   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T11:55:19,890   copying build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T11:55:19,905   copying build/lib.linux-armv7l-3.9/cytohmm/__init__.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T11:55:19,907   copying build/lib.linux-armv7l-3.9/cytohmm/sequence_segmenter.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T11:55:19,909   copying build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T11:55:19,925   running install_egg_info
2021-07-29T11:55:19,948   running egg_info
2021-07-29T11:55:19,949   writing cytohmm.egg-info/PKG-INFO
2021-07-29T11:55:19,951   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-07-29T11:55:19,953   writing requirements to cytohmm.egg-info/requires.txt
2021-07-29T11:55:19,954   writing top-level names to cytohmm.egg-info/top_level.txt
2021-07-29T11:55:19,960   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T11:55:19,962   reading manifest template 'MANIFEST.in'
2021-07-29T11:55:19,970   adding license file 'LICENSE'
2021-07-29T11:55:19,973   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T11:55:19,974   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.1.0-py3.9.egg-info
2021-07-29T11:55:19,987   running install_scripts
2021-07-29T11:55:20,029   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-29T11:55:20,033   creating build/bdist.linux-armv7l/wheel/cytohmm-0.1.0.dist-info/WHEEL
2021-07-29T11:55:20,036   creating '/tmp/pip-wheel-4voh0_17/cytohmm-0.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-29T11:55:20,038   adding 'cytohmm/__init__.py'
2021-07-29T11:55:20,126   adding 'cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T11:55:20,246   adding 'cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T11:55:20,253   adding 'cytohmm/sequence_segmenter.py'
2021-07-29T11:55:20,255   adding 'cytohmm-0.1.0.dist-info/LICENSE'
2021-07-29T11:55:20,256   adding 'cytohmm-0.1.0.dist-info/METADATA'
2021-07-29T11:55:20,257   adding 'cytohmm-0.1.0.dist-info/WHEEL'
2021-07-29T11:55:20,257   adding 'cytohmm-0.1.0.dist-info/top_level.txt'
2021-07-29T11:55:20,258   adding 'cytohmm-0.1.0.dist-info/RECORD'
2021-07-29T11:55:20,265   removing build/bdist.linux-armv7l/wheel
2021-07-29T11:55:20,414   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-07-29T11:55:20,421   Created wheel for cytohmm: filename=cytohmm-0.1.0-cp39-cp39-linux_armv7l.whl size=364458 sha256=1b4bd29cd882899e1c7763c57cacb8b67169ea4098bd1c5febe841183e1f603a
2021-07-29T11:55:20,421   Stored in directory: /tmp/pip-ephem-wheel-cache-_zob9fm0/wheels/b6/7b/02/8409d65598d9cb4cc5c4b91ae02eef7d5af02389bd9ece75ad
2021-07-29T11:55:20,430 Successfully built cytohmm
2021-07-29T11:55:20,449 Removed build tracker: '/tmp/pip-req-tracker-eoalcc6k'