2021-07-29T12:01:48,054 Created temporary directory: /tmp/pip-ephem-wheel-cache-5oxrujak
2021-07-29T12:01:48,057 Created temporary directory: /tmp/pip-req-tracker-v_12j_kn
2021-07-29T12:01:48,058 Initialized build tracking at /tmp/pip-req-tracker-v_12j_kn
2021-07-29T12:01:48,058 Created build tracker: /tmp/pip-req-tracker-v_12j_kn
2021-07-29T12:01:48,058 Entered build tracker: /tmp/pip-req-tracker-v_12j_kn
2021-07-29T12:01:48,059 Created temporary directory: /tmp/pip-wheel-bly_0m13
2021-07-29T12:01:48,091 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T12:01:48,091 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T12:01:48,092 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T12:01:48,092 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T12:01:48,092 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T12:01:48,095 WARNING: Location '/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T12:01:48,095 WARNING: Location 't/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T12:01:48,096 WARNING: Location 'm/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T12:01:48,096 WARNING: Location 'p/cytohmm/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T12:01:48,096 1 location(s) to search for versions of cytohmm:
2021-07-29T12:01:48,096 * https://pypi.org/simple/cytohmm/
2021-07-29T12:01:48,097 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-07-29T12:01:48,097 Getting page https://pypi.org/simple/cytohmm/
2021-07-29T12:01:48,099 Found index url https://pypi.org/simple
2021-07-29T12:01:48,188   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-07-29T12:01:48,189   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-07-29T12:01:48,189   Found link https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 (from https://pypi.org/simple/cytohmm/), version: 0.0.3
2021-07-29T12:01:48,190   Found link https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.0
2021-07-29T12:01:48,191   Found link https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.1
2021-07-29T12:01:48,191 Skipping link: not a file: https://pypi.org/simple/cytohmm/
2021-07-29T12:01:48,209 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-07-29T12:01:48,227 Collecting cytohmm==0.1.1
2021-07-29T12:01:48,229   Created temporary directory: /tmp/pip-unpack-a_wme6cj
2021-07-29T12:01:48,279   Downloading cytohmm-0.1.1.tar.gz (220 kB)
2021-07-29T12:01:48,400   Added cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 to build tracker '/tmp/pip-req-tracker-v_12j_kn'
2021-07-29T12:01:48,401     Running setup.py (path:/tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f/setup.py) egg_info for package cytohmm
2021-07-29T12:01:48,402     Created temporary directory: /tmp/pip-pip-egg-info-rufieeec
2021-07-29T12:01:48,402     Running command python setup.py egg_info
2021-07-29T12:01:50,253     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f/src/cytohmm/likelihood.pyx
2021-07-29T12:01:50,254       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T12:01:51,890     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f/src/cytohmm/markov_chain.pyx
2021-07-29T12:01:51,890       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T12:01:53,772     Compiling src/cytohmm/markov_chain.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T12:01:53,772     Compiling src/cytohmm/likelihood.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-29T12:01:53,772     [1/2] Cythonizing src/cytohmm/likelihood.pyx
2021-07-29T12:01:53,772     [2/2] Cythonizing src/cytohmm/markov_chain.pyx
2021-07-29T12:01:53,950     running egg_info
2021-07-29T12:01:53,952     creating /tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info
2021-07-29T12:01:53,953     writing /tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/PKG-INFO
2021-07-29T12:01:53,956     writing dependency_links to /tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/dependency_links.txt
2021-07-29T12:01:53,958     writing requirements to /tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/requires.txt
2021-07-29T12:01:53,959     writing top-level names to /tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/top_level.txt
2021-07-29T12:01:53,961     writing manifest file '/tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/SOURCES.txt'
2021-07-29T12:01:54,107     reading manifest file '/tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/SOURCES.txt'
2021-07-29T12:01:54,108     reading manifest template 'MANIFEST.in'
2021-07-29T12:01:54,117     adding license file 'LICENSE'
2021-07-29T12:01:54,119     writing manifest file '/tmp/pip-pip-egg-info-rufieeec/cytohmm.egg-info/SOURCES.txt'
2021-07-29T12:01:54,323   Source in /tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f has version 0.1.1, which satisfies requirement cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6
2021-07-29T12:01:54,324   Removed cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 from build tracker '/tmp/pip-req-tracker-v_12j_kn'
2021-07-29T12:01:54,330 Created temporary directory: /tmp/pip-unpack-upyoci5w
2021-07-29T12:01:54,331 Building wheels for collected packages: cytohmm
2021-07-29T12:01:54,335   Created temporary directory: /tmp/pip-wheel-4dt5crpw
2021-07-29T12:01:54,336   Building wheel for cytohmm (setup.py): started
2021-07-29T12:01:54,336   Destination directory: /tmp/pip-wheel-4dt5crpw
2021-07-29T12:01:54,337   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bly_0m13/cytohmm_ce3709af37c84cca903aabe686406a4f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4dt5crpw
2021-07-29T12:01:56,103   running bdist_wheel
2021-07-29T12:01:56,108   running build
2021-07-29T12:01:56,108   running build_py
2021-07-29T12:01:56,246   creating build
2021-07-29T12:01:56,246   creating build/lib.linux-armv7l-3.9
2021-07-29T12:01:56,247   creating build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T12:01:56,248   copying src/cytohmm/sequence_segmenter.py -> build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T12:01:56,250   copying src/cytohmm/__init__.py -> build/lib.linux-armv7l-3.9/cytohmm
2021-07-29T12:01:56,252   running build_ext
2021-07-29T12:01:56,257   building 'cytohmm.markov_chain' extension
2021-07-29T12:01:56,258   creating build/temp.linux-armv7l-3.9
2021-07-29T12:01:56,258   creating build/temp.linux-armv7l-3.9/src
2021-07-29T12:01:56,259   creating build/temp.linux-armv7l-3.9/src/cytohmm
2021-07-29T12:01:56,260   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/cytohmm/markov_chain.c -o build/temp.linux-armv7l-3.9/src/cytohmm/markov_chain.o
2021-07-29T12:01:56,670   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T12:01:56,671                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T12:01:56,671                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T12:01:56,671                    from src/cytohmm/markov_chain.c:642:
2021-07-29T12:01:56,671   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T12:01:56,671      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T12:01:56,671         |  ^~~~~~~
2021-07-29T12:02:07,124   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cytohmm/markov_chain.o -o build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so
2021-07-29T12:02:07,275   building 'cytohmm.likelihood' extension
2021-07-29T12:02:07,275   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/cytohmm/likelihood.c -o build/temp.linux-armv7l-3.9/src/cytohmm/likelihood.o
2021-07-29T12:02:07,651   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T12:02:07,651                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T12:02:07,652                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T12:02:07,652                    from src/cytohmm/likelihood.c:642:
2021-07-29T12:02:07,652   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T12:02:07,652      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T12:02:07,652         |  ^~~~~~~
2021-07-29T12:02:14,303   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/cytohmm/likelihood.o -o build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so
2021-07-29T12:02:14,440   installing to build/bdist.linux-armv7l/wheel
2021-07-29T12:02:14,441   running install
2021-07-29T12:02:14,443   running install_lib
2021-07-29T12:02:14,448   creating build/bdist.linux-armv7l
2021-07-29T12:02:14,449   creating build/bdist.linux-armv7l/wheel
2021-07-29T12:02:14,451   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T12:02:14,452   copying build/lib.linux-armv7l-3.9/cytohmm/sequence_segmenter.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T12:02:14,454   copying build/lib.linux-armv7l-3.9/cytohmm/__init__.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T12:02:14,457   copying build/lib.linux-armv7l-3.9/cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T12:02:14,481   copying build/lib.linux-armv7l-3.9/cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-07-29T12:02:14,492   running install_egg_info
2021-07-29T12:02:14,513   running egg_info
2021-07-29T12:02:14,514   writing cytohmm.egg-info/PKG-INFO
2021-07-29T12:02:14,516   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-07-29T12:02:14,518   writing requirements to cytohmm.egg-info/requires.txt
2021-07-29T12:02:14,519   writing top-level names to cytohmm.egg-info/top_level.txt
2021-07-29T12:02:14,524   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T12:02:14,526   reading manifest template 'MANIFEST.in'
2021-07-29T12:02:14,534   adding license file 'LICENSE'
2021-07-29T12:02:14,537   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-07-29T12:02:14,538   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.1.1-py3.9.egg-info
2021-07-29T12:02:14,551   running install_scripts
2021-07-29T12:02:14,592   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-29T12:02:14,597   creating build/bdist.linux-armv7l/wheel/cytohmm-0.1.1.dist-info/WHEEL
2021-07-29T12:02:14,600   creating '/tmp/pip-wheel-4dt5crpw/cytohmm-0.1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-29T12:02:14,602   adding 'cytohmm/__init__.py'
2021-07-29T12:02:14,690   adding 'cytohmm/likelihood.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T12:02:14,812   adding 'cytohmm/markov_chain.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T12:02:14,818   adding 'cytohmm/sequence_segmenter.py'
2021-07-29T12:02:14,820   adding 'cytohmm-0.1.1.dist-info/LICENSE'
2021-07-29T12:02:14,821   adding 'cytohmm-0.1.1.dist-info/METADATA'
2021-07-29T12:02:14,822   adding 'cytohmm-0.1.1.dist-info/WHEEL'
2021-07-29T12:02:14,823   adding 'cytohmm-0.1.1.dist-info/top_level.txt'
2021-07-29T12:02:14,823   adding 'cytohmm-0.1.1.dist-info/RECORD'
2021-07-29T12:02:14,830   removing build/bdist.linux-armv7l/wheel
2021-07-29T12:02:14,978   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-07-29T12:02:14,985   Created wheel for cytohmm: filename=cytohmm-0.1.1-cp39-cp39-linux_armv7l.whl size=365352 sha256=cfe954eb2284bed9471bea9b5d7649fcee6b7223558be31b35dcb6643483e383
2021-07-29T12:02:14,985   Stored in directory: /tmp/pip-ephem-wheel-cache-5oxrujak/wheels/29/57/e6/f40c71c93f06eca5b1bd4df08ea1b188f278b486a4a86c9b66
2021-07-29T12:02:14,996 Successfully built cytohmm
2021-07-29T12:02:15,017 Removed build tracker: '/tmp/pip-req-tracker-v_12j_kn'