2021-07-29T13:38:47,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-9rnudj0y 2021-07-29T13:38:47,867 Created temporary directory: /tmp/pip-req-tracker-wt4qgly5 2021-07-29T13:38:47,868 Initialized build tracking at /tmp/pip-req-tracker-wt4qgly5 2021-07-29T13:38:47,868 Created build tracker: /tmp/pip-req-tracker-wt4qgly5 2021-07-29T13:38:47,868 Entered build tracker: /tmp/pip-req-tracker-wt4qgly5 2021-07-29T13:38:47,869 Created temporary directory: /tmp/pip-wheel-7win5ve0 2021-07-29T13:38:47,900 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T13:38:47,901 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T13:38:47,901 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T13:38:47,901 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T13:38:47,901 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T13:38:47,904 WARNING: Location '/jcvi/' is ignored: it is 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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-29T13:38:48,037 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-29T13:38:48,037 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-29T13:38:48,037 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-07-29T13:38:48,038 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-07-29T13:38:48,038 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-07-29T13:38:48,038 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-29T13:38:48,039 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-29T13:38:48,039 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-29T13:38:48,039 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-29T13:38:48,039 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-29T13:38:48,040 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-29T13:38:48,040 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-29T13:38:48,040 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-29T13:38:48,040 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-29T13:38:48,041 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-29T13:38:48,041 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-29T13:38:48,041 Found link https://files.pythonhosted.org/packages/95/94/db0f2759b6f1e6f6e4f7e66f8168b95c846a4ba233a6b71a1bc5352f4014/jcvi-1.1.17.tar.gz#sha256=e8bccf025ce08acdb89bb9f9b3017e38c6ed65f55785edd298338af8adfe3769 (from https://pypi.org/simple/jcvi/), version: 1.1.17 2021-07-29T13:38:48,042 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-29T13:38:48,067 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-29T13:38:48,084 Collecting jcvi==1.1.12 2021-07-29T13:38:48,085 Created temporary directory: /tmp/pip-unpack-mqlvnxu5 2021-07-29T13:38:48,491 Downloading jcvi-1.1.12.tar.gz (820 kB) 2021-07-29T13:38:49,217 Added jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe to build tracker '/tmp/pip-req-tracker-wt4qgly5' 2021-07-29T13:38:49,218 Running setup.py (path:/tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2/setup.py) egg_info for package jcvi 2021-07-29T13:38:49,219 Created temporary directory: /tmp/pip-pip-egg-info-yseuha_6 2021-07-29T13:38:49,219 Running command python setup.py egg_info 2021-07-29T13:38:50,632 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-07-29T13:38:50,632 warnings.warn(tmpl.format(**locals())) 2021-07-29T13:38:50,684 running egg_info 2021-07-29T13:38:50,686 creating /tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info 2021-07-29T13:38:50,687 writing /tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/PKG-INFO 2021-07-29T13:38:50,690 writing dependency_links to /tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/dependency_links.txt 2021-07-29T13:38:50,692 writing requirements to /tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/requires.txt 2021-07-29T13:38:50,693 writing top-level names to /tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/top_level.txt 2021-07-29T13:38:50,694 writing manifest file '/tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/SOURCES.txt' 2021-07-29T13:38:50,719 reading manifest file '/tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/SOURCES.txt' 2021-07-29T13:38:50,721 reading manifest template 'MANIFEST.in' 2021-07-29T13:38:50,725 adding license file 'LICENSE' 2021-07-29T13:38:50,733 writing manifest file '/tmp/pip-pip-egg-info-yseuha_6/jcvi.egg-info/SOURCES.txt' 2021-07-29T13:38:50,833 Source in /tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2 has version 1.1.12, which satisfies requirement jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe 2021-07-29T13:38:50,834 Removed jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe from build tracker '/tmp/pip-req-tracker-wt4qgly5' 2021-07-29T13:38:50,839 Created temporary directory: /tmp/pip-unpack-51df3_ne 2021-07-29T13:38:50,839 Building wheels for collected packages: jcvi 2021-07-29T13:38:50,844 Created temporary directory: /tmp/pip-wheel-x59kuxeg 2021-07-29T13:38:50,844 Building wheel for jcvi (setup.py): started 2021-07-29T13:38:50,844 Destination directory: /tmp/pip-wheel-x59kuxeg 2021-07-29T13:38:50,844 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x59kuxeg 2021-07-29T13:38:52,158 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-07-29T13:38:52,159 warnings.warn(tmpl.format(**locals())) 2021-07-29T13:38:52,225 running bdist_wheel 2021-07-29T13:38:52,230 running build 2021-07-29T13:38:52,231 running build_py 2021-07-29T13:38:52,237 creating build 2021-07-29T13:38:52,238 creating build/lib.linux-armv7l-3.9 2021-07-29T13:38:52,239 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-29T13:38:52,241 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T13:38:52,243 copying jcvi/_version.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-29T13:38:52,246 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,247 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,251 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,253 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,255 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,257 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,259 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,260 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,263 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,266 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,270 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,273 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-29T13:38:52,276 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,277 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,280 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,284 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,287 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,290 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,292 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,294 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,295 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,297 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,300 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-29T13:38:52,304 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,305 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,307 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,310 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,313 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,315 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,317 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,319 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,322 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,324 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,326 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,329 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,330 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,333 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-29T13:38:52,337 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,338 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,341 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,343 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,346 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,348 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,351 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,354 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,358 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,360 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,363 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,365 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,368 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,370 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,373 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,378 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,380 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,382 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,384 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,387 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,389 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,392 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,397 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,402 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,404 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,406 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,408 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,411 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,413 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,415 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,418 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,423 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,424 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,428 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,430 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,432 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,434 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,435 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,437 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,440 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,442 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,444 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,447 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,449 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-29T13:38:52,454 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,454 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,457 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,460 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,462 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,465 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,469 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,471 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,475 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,478 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,481 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,483 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,485 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,487 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,490 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,492 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,496 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,498 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,500 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,502 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,503 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,505 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,508 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,510 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,512 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,515 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,517 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,521 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,524 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,525 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,527 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,529 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,531 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,532 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,534 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,536 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,538 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,541 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,543 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,545 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,547 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-29T13:38:52,551 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,552 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,555 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,558 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,562 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,565 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,568 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,570 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,573 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,576 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,577 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,580 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,582 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,584 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,586 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,588 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,592 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,595 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-29T13:38:52,599 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,600 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,602 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,605 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,607 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,610 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,613 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,616 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,618 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,620 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,623 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,624 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,628 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,632 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,634 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,636 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,639 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,643 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,645 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,648 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,651 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,653 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,657 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,660 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-29T13:38:52,664 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,665 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,667 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,669 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,672 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,674 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,678 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,681 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,683 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,685 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,688 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,690 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,693 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,695 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,698 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,700 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,702 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,703 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,706 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,708 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,711 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,714 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,717 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,719 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,722 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,726 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,728 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-29T13:38:52,732 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,732 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,734 running egg_info 2021-07-29T13:38:52,767 writing jcvi.egg-info/PKG-INFO 2021-07-29T13:38:52,769 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-29T13:38:52,771 writing requirements to jcvi.egg-info/requires.txt 2021-07-29T13:38:52,772 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-29T13:38:52,792 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T13:38:52,799 reading manifest template 'MANIFEST.in' 2021-07-29T13:38:52,803 adding license file 'LICENSE' 2021-07-29T13:38:52,814 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-29T13:38:52,821 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:38:52,824 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:52,826 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,829 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,834 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,836 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,840 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,843 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,845 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,848 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,851 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,853 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,857 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,860 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-29T13:38:52,878 UPDATING build/lib.linux-armv7l-3.9/jcvi/_version.py 2021-07-29T13:38:52,880 set build/lib.linux-armv7l-3.9/jcvi/_version.py to 'v1.1.12' 2021-07-29T13:38:52,880 running build_ext 2021-07-29T13:38:52,944 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-29T13:38:53,544 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2/jcvi/assembly/chic.pyx 2021-07-29T13:38:53,544 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T13:38:56,434 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-29T13:38:56,440 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-7win5ve0/jcvi_7b8861331a874fdd8312b549d244f6e2/jcvi/formats/cblast.pyx 2021-07-29T13:38:56,440 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-29T13:38:57,384 building 'jcvi.assembly.chic' extension 2021-07-29T13:38:57,385 creating build/temp.linux-armv7l-3.9 2021-07-29T13:38:57,385 creating build/temp.linux-armv7l-3.9/jcvi 2021-07-29T13:38:57,386 creating build/temp.linux-armv7l-3.9/jcvi/assembly 2021-07-29T13:38:57,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -O3 2021-07-29T13:38:57,773 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-29T13:38:57,773 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-29T13:38:57,773 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-29T13:38:57,774 from jcvi/assembly/chic.c:612: 2021-07-29T13:38:57,774 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-29T13:38:57,774 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-29T13:38:57,774 | ^~~~~~~ 2021-07-29T13:39:01,529 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-29T13:39:01,670 building 'jcvi.formats.cblast' extension 2021-07-29T13:39:01,671 creating build/temp.linux-armv7l-3.9/jcvi/formats 2021-07-29T13:39:01,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -O3 2021-07-29T13:39:11,163 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so 2021-07-29T13:39:11,320 installing to build/bdist.linux-armv7l/wheel 2021-07-29T13:39:11,321 running install 2021-07-29T13:39:11,322 running install_lib 2021-07-29T13:39:11,326 creating build/bdist.linux-armv7l 2021-07-29T13:39:11,326 creating build/bdist.linux-armv7l/wheel 2021-07-29T13:39:11,328 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T13:39:11,330 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,331 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,334 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,336 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,339 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,340 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,343 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,344 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,347 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,350 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,354 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,357 copying build/lib.linux-armv7l-3.9/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-29T13:39:11,360 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,361 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,364 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,368 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,371 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,374 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,377 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,379 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,380 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,383 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,385 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-29T13:39:11,389 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T13:39:11,393 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,394 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,396 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,399 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,402 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,404 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,406 copying build/lib.linux-armv7l-3.9/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,408 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,412 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,413 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,416 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,418 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,420 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,425 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,428 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,431 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,432 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,436 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,438 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,441 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,445 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,448 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-29T13:39:11,450 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,453 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,456 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,459 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,460 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,463 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-29T13:39:11,466 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,467 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,471 copying build/lib.linux-armv7l-3.9/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,473 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,476 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,478 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,481 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,484 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,488 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,490 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,493 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,496 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,499 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,501 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,504 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,524 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,528 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,530 copying build/lib.linux-armv7l-3.9/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,532 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,533 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,536 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,538 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,541 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,547 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,552 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,554 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,556 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,559 copying build/lib.linux-armv7l-3.9/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,562 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,564 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,567 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,569 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,573 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-29T13:39:11,577 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,578 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,582 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,585 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,588 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,590 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,591 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,594 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,596 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,599 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,601 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,604 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,607 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-29T13:39:11,611 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,612 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,615 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,618 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,621 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,624 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,627 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,629 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,633 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,637 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,640 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,642 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,651 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,653 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,655 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,658 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,661 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,664 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,667 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,670 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,672 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,674 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,676 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,678 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,681 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,684 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,686 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,689 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,692 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,697 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-29T13:39:11,700 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,701 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,703 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,706 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,708 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,710 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,712 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,714 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,717 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,720 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,723 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,725 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,728 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-29T13:39:11,731 copying build/lib.linux-armv7l-3.9/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-29T13:39:11,733 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,734 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,737 copying build/lib.linux-armv7l-3.9/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,740 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,745 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,748 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,750 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,753 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,756 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,759 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,761 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,764 copying build/lib.linux-armv7l-3.9/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,766 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,768 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,770 copying build/lib.linux-armv7l-3.9/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,773 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,776 copying build/lib.linux-armv7l-3.9/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,779 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-29T13:39:11,782 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,783 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,786 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,788 copying build/lib.linux-armv7l-3.9/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,790 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,793 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,796 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,799 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,801 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,803 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,806 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,808 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,811 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,814 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,816 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,818 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,822 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,825 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,828 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,831 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,834 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,836 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,839 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,842 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-29T13:39:11,845 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,846 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,849 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,851 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,854 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,857 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,860 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,863 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,865 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,867 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,870 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,873 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,876 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,879 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,882 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,884 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,886 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,888 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,891 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,893 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,896 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,900 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,903 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,905 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,909 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,914 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,916 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-29T13:39:11,919 running install_egg_info 2021-07-29T13:39:11,929 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.12-py3.9.egg-info 2021-07-29T13:39:11,947 running install_scripts 2021-07-29T13:39:12,013 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T13:39:12,017 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.12.dist-info/WHEEL 2021-07-29T13:39:12,020 creating '/tmp/pip-wheel-x59kuxeg/jcvi-1.1.12-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T13:39:12,023 adding 'jcvi/__init__.py' 2021-07-29T13:39:12,024 adding 'jcvi/_version.py' 2021-07-29T13:39:12,026 adding 'jcvi/algorithms/__init__.py' 2021-07-29T13:39:12,027 adding 'jcvi/algorithms/__main__.py' 2021-07-29T13:39:12,029 adding 'jcvi/algorithms/ec.py' 2021-07-29T13:39:12,031 adding 'jcvi/algorithms/formula.py' 2021-07-29T13:39:12,033 adding 'jcvi/algorithms/graph.py' 2021-07-29T13:39:12,035 adding 'jcvi/algorithms/lis.py' 2021-07-29T13:39:12,039 adding 'jcvi/algorithms/lpsolve.py' 2021-07-29T13:39:12,041 adding 'jcvi/algorithms/matrix.py' 2021-07-29T13:39:12,043 adding 'jcvi/algorithms/maxsum.py' 2021-07-29T13:39:12,044 adding 'jcvi/algorithms/ml.py' 2021-07-29T13:39:12,045 adding 'jcvi/algorithms/supermap.py' 2021-07-29T13:39:12,047 adding 'jcvi/algorithms/tsp.py' 2021-07-29T13:39:12,049 adding 'jcvi/annotation/__init__.py' 2021-07-29T13:39:12,050 adding 'jcvi/annotation/__main__.py' 2021-07-29T13:39:12,053 adding 'jcvi/annotation/ahrd.py' 2021-07-29T13:39:12,055 adding 'jcvi/annotation/automaton.py' 2021-07-29T13:39:12,057 adding 'jcvi/annotation/depth.py' 2021-07-29T13:39:12,058 adding 'jcvi/annotation/evm.py' 2021-07-29T13:39:12,061 adding 'jcvi/annotation/maker.py' 2021-07-29T13:39:12,063 adding 'jcvi/annotation/pasa.py' 2021-07-29T13:39:12,066 adding 'jcvi/annotation/qc.py' 2021-07-29T13:39:12,072 adding 'jcvi/annotation/reformat.py' 2021-07-29T13:39:12,074 adding 'jcvi/annotation/stats.py' 2021-07-29T13:39:12,076 adding 'jcvi/annotation/train.py' 2021-07-29T13:39:12,078 adding 'jcvi/apps/__init__.py' 2021-07-29T13:39:12,079 adding 'jcvi/apps/__main__.py' 2021-07-29T13:39:12,082 adding 'jcvi/apps/align.py' 2021-07-29T13:39:12,091 adding 'jcvi/apps/base.py' 2021-07-29T13:39:12,094 adding 'jcvi/apps/biomart.py' 2021-07-29T13:39:12,095 adding 'jcvi/apps/blastplus.py' 2021-07-29T13:39:12,097 adding 'jcvi/apps/bowtie.py' 2021-07-29T13:39:12,099 adding 'jcvi/apps/bwa.py' 2021-07-29T13:39:12,101 adding 'jcvi/apps/cap3.py' 2021-07-29T13:39:12,102 adding 'jcvi/apps/cdhit.py' 2021-07-29T13:39:12,104 adding 'jcvi/apps/emboss.py' 2021-07-29T13:39:12,107 adding 'jcvi/apps/fetch.py' 2021-07-29T13:39:12,110 adding 'jcvi/apps/gbsubmit.py' 2021-07-29T13:39:12,111 adding 'jcvi/apps/gmap.py' 2021-07-29T13:39:12,114 adding 'jcvi/apps/grid.py' 2021-07-29T13:39:12,119 adding 'jcvi/apps/ks.py' 2021-07-29T13:39:12,121 adding 'jcvi/apps/lastz.py' 2021-07-29T13:39:12,122 adding 'jcvi/apps/mask.py' 2021-07-29T13:39:12,127 adding 'jcvi/apps/phylo.py' 2021-07-29T13:39:12,129 adding 'jcvi/apps/r.py' 2021-07-29T13:39:12,130 adding 'jcvi/apps/restriction.py' 2021-07-29T13:39:12,132 adding 'jcvi/apps/script.py' 2021-07-29T13:39:12,133 adding 'jcvi/apps/softlink.py' 2021-07-29T13:39:12,138 adding 'jcvi/apps/uclust.py' 2021-07-29T13:39:12,140 adding 'jcvi/apps/uniprot.py' 2021-07-29T13:39:12,141 adding 'jcvi/apps/vecscreen.py' 2021-07-29T13:39:12,143 adding 'jcvi/assembly/__init__.py' 2021-07-29T13:39:12,144 adding 'jcvi/assembly/__main__.py' 2021-07-29T13:39:12,154 adding 'jcvi/assembly/allmaps.py' 2021-07-29T13:39:12,157 adding 'jcvi/assembly/allpaths.py' 2021-07-29T13:39:12,159 adding 'jcvi/assembly/amos.py' 2021-07-29T13:39:12,161 adding 'jcvi/assembly/automaton.py' 2021-07-29T13:39:12,163 adding 'jcvi/assembly/bambus.py' 2021-07-29T13:39:12,164 adding 'jcvi/assembly/base.py' 2021-07-29T13:39:12,169 adding 'jcvi/assembly/ca.py' 2021-07-29T13:39:12,217 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T13:39:12,220 adding 'jcvi/assembly/chic.pyx' 2021-07-29T13:39:12,222 adding 'jcvi/assembly/coverage.py' 2021-07-29T13:39:12,224 adding 'jcvi/assembly/gaps.py' 2021-07-29T13:39:12,226 adding 'jcvi/assembly/geneticmap.py' 2021-07-29T13:39:12,231 adding 'jcvi/assembly/goldenpath.py' 2021-07-29T13:39:12,239 adding 'jcvi/assembly/hic.py' 2021-07-29T13:39:12,245 adding 'jcvi/assembly/kmer.py' 2021-07-29T13:39:12,247 adding 'jcvi/assembly/meraculous.py' 2021-07-29T13:39:12,249 adding 'jcvi/assembly/opticalmap.py' 2021-07-29T13:39:12,253 adding 'jcvi/assembly/patch.py' 2021-07-29T13:39:12,255 adding 'jcvi/assembly/pbjelly.py' 2021-07-29T13:39:12,258 adding 'jcvi/assembly/postprocess.py' 2021-07-29T13:39:12,261 adding 'jcvi/assembly/preprocess.py' 2021-07-29T13:39:12,263 adding 'jcvi/assembly/sim.py' 2021-07-29T13:39:12,265 adding 'jcvi/assembly/soap.py' 2021-07-29T13:39:12,267 adding 'jcvi/assembly/sspace.py' 2021-07-29T13:39:12,269 adding 'jcvi/assembly/syntenypath.py' 2021-07-29T13:39:12,271 adding 'jcvi/assembly/trinity.py' 2021-07-29T13:39:12,273 adding 'jcvi/assembly/unitig.py' 2021-07-29T13:39:12,275 adding 'jcvi/compara/__init__.py' 2021-07-29T13:39:12,276 adding 'jcvi/compara/__main__.py' 2021-07-29T13:39:12,278 adding 'jcvi/compara/blastfilter.py' 2021-07-29T13:39:12,282 adding 'jcvi/compara/catalog.py' 2021-07-29T13:39:12,285 adding 'jcvi/compara/fractionation.py' 2021-07-29T13:39:12,288 adding 'jcvi/compara/pad.py' 2021-07-29T13:39:12,289 adding 'jcvi/compara/phylogeny.py' 2021-07-29T13:39:12,291 adding 'jcvi/compara/quota.py' 2021-07-29T13:39:12,293 adding 'jcvi/compara/reconstruct.py' 2021-07-29T13:39:12,295 adding 'jcvi/compara/synfind.py' 2021-07-29T13:39:12,304 adding 'jcvi/compara/synteny.py' 2021-07-29T13:39:12,306 adding 'jcvi/formats/__init__.py' 2021-07-29T13:39:12,307 adding 'jcvi/formats/__main__.py' 2021-07-29T13:39:12,309 adding 'jcvi/formats/ace.py' 2021-07-29T13:39:12,317 adding 'jcvi/formats/agp.py' 2021-07-29T13:39:12,322 adding 'jcvi/formats/base.py' 2021-07-29T13:39:12,332 adding 'jcvi/formats/bed.py' 2021-07-29T13:39:12,338 adding 'jcvi/formats/blast.py' 2021-07-29T13:39:12,340 adding 'jcvi/formats/btab.py' 2021-07-29T13:39:12,476 adding 'jcvi/formats/cblast.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T13:39:12,483 adding 'jcvi/formats/cblast.pyx' 2021-07-29T13:39:12,484 adding 'jcvi/formats/cdt.py' 2021-07-29T13:39:12,486 adding 'jcvi/formats/chain.py' 2021-07-29T13:39:12,487 adding 'jcvi/formats/contig.py' 2021-07-29T13:39:12,490 adding 'jcvi/formats/coords.py' 2021-07-29T13:39:12,491 adding 'jcvi/formats/excel.py' 2021-07-29T13:39:12,502 adding 'jcvi/formats/fasta.py' 2021-07-29T13:39:12,506 adding 'jcvi/formats/fastq.py' 2021-07-29T13:39:12,508 adding 'jcvi/formats/fpc.py' 2021-07-29T13:39:12,510 adding 'jcvi/formats/genbank.py' 2021-07-29T13:39:12,526 adding 'jcvi/formats/gff.py' 2021-07-29T13:39:12,528 adding 'jcvi/formats/html.py' 2021-07-29T13:39:12,530 adding 'jcvi/formats/maf.py' 2021-07-29T13:39:12,531 adding 'jcvi/formats/obo.py' 2021-07-29T13:39:12,532 adding 'jcvi/formats/paf.py' 2021-07-29T13:39:12,534 adding 'jcvi/formats/pdf.py' 2021-07-29T13:39:12,535 adding 'jcvi/formats/posmap.py' 2021-07-29T13:39:12,537 adding 'jcvi/formats/psl.py' 2021-07-29T13:39:12,539 adding 'jcvi/formats/pyblast.py' 2021-07-29T13:39:12,543 adding 'jcvi/formats/sam.py' 2021-07-29T13:39:12,544 adding 'jcvi/formats/sbt.py' 2021-07-29T13:39:12,546 adding 'jcvi/formats/sizes.py' 2021-07-29T13:39:12,550 adding 'jcvi/formats/vcf.py' 2021-07-29T13:39:12,552 adding 'jcvi/graphics/__init__.py' 2021-07-29T13:39:12,553 adding 'jcvi/graphics/__main__.py' 2021-07-29T13:39:12,555 adding 'jcvi/graphics/align.py' 2021-07-29T13:39:12,558 adding 'jcvi/graphics/assembly.py' 2021-07-29T13:39:12,561 adding 'jcvi/graphics/base.py' 2021-07-29T13:39:12,563 adding 'jcvi/graphics/blastplot.py' 2021-07-29T13:39:12,566 adding 'jcvi/graphics/chromosome.py' 2021-07-29T13:39:12,568 adding 'jcvi/graphics/coverage.py' 2021-07-29T13:39:12,571 adding 'jcvi/graphics/dotplot.py' 2021-07-29T13:39:12,574 adding 'jcvi/graphics/glyph.py' 2021-07-29T13:39:12,577 adding 'jcvi/graphics/grabseeds.py' 2021-07-29T13:39:12,579 adding 'jcvi/graphics/graph.py' 2021-07-29T13:39:12,581 adding 'jcvi/graphics/heatmap.py' 2021-07-29T13:39:12,582 adding 'jcvi/graphics/histogram.py' 2021-07-29T13:39:12,585 adding 'jcvi/graphics/karyotype.py' 2021-07-29T13:39:12,590 adding 'jcvi/graphics/landscape.py' 2021-07-29T13:39:12,591 adding 'jcvi/graphics/logo.py' 2021-07-29T13:39:12,593 adding 'jcvi/graphics/mummerplot.py' 2021-07-29T13:39:12,595 adding 'jcvi/graphics/synteny.py' 2021-07-29T13:39:12,597 adding 'jcvi/graphics/table.py' 2021-07-29T13:39:12,600 adding 'jcvi/graphics/tree.py' 2021-07-29T13:39:12,602 adding 'jcvi/graphics/wheel.py' 2021-07-29T13:39:12,603 adding 'jcvi/graphics/whisker.py' 2021-07-29T13:39:12,605 adding 'jcvi/projects/__init__.py' 2021-07-29T13:39:12,606 adding 'jcvi/projects/__main__.py' 2021-07-29T13:39:12,609 adding 'jcvi/projects/age.py' 2021-07-29T13:39:12,611 adding 'jcvi/projects/alfalfa.py' 2021-07-29T13:39:12,613 adding 'jcvi/projects/allmaps.py' 2021-07-29T13:39:12,615 adding 'jcvi/projects/bites.py' 2021-07-29T13:39:12,617 adding 'jcvi/projects/heterosis.py' 2021-07-29T13:39:12,619 adding 'jcvi/projects/ies.py' 2021-07-29T13:39:12,622 adding 'jcvi/projects/misc.py' 2021-07-29T13:39:12,625 adding 'jcvi/projects/napus.py' 2021-07-29T13:39:12,628 adding 'jcvi/projects/pineapple.py' 2021-07-29T13:39:12,629 adding 'jcvi/projects/pistachio.py' 2021-07-29T13:39:12,638 adding 'jcvi/projects/str.py' 2021-07-29T13:39:12,641 adding 'jcvi/projects/sugarcane.py' 2021-07-29T13:39:12,644 adding 'jcvi/projects/synfind.py' 2021-07-29T13:39:12,647 adding 'jcvi/projects/tgbs.py' 2021-07-29T13:39:12,649 adding 'jcvi/projects/vanilla.py' 2021-07-29T13:39:12,651 adding 'jcvi/utils/__init__.py' 2021-07-29T13:39:12,652 adding 'jcvi/utils/__main__.py' 2021-07-29T13:39:12,656 adding 'jcvi/utils/aws.py' 2021-07-29T13:39:12,658 adding 'jcvi/utils/cbook.py' 2021-07-29T13:39:12,659 adding 'jcvi/utils/console.py' 2021-07-29T13:39:12,661 adding 'jcvi/utils/db.py' 2021-07-29T13:39:12,663 adding 'jcvi/utils/ez_setup.py' 2021-07-29T13:39:12,664 adding 'jcvi/utils/grouper.py' 2021-07-29T13:39:12,666 adding 'jcvi/utils/orderedcollections.py' 2021-07-29T13:39:12,668 adding 'jcvi/utils/range.py' 2021-07-29T13:39:12,670 adding 'jcvi/utils/table.py' 2021-07-29T13:39:12,672 adding 'jcvi/utils/taxonomy.py' 2021-07-29T13:39:12,673 adding 'jcvi/utils/webcolors.py' 2021-07-29T13:39:12,676 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-29T13:39:12,693 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-29T13:39:12,698 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-29T13:39:12,704 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-29T13:39:12,708 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-29T13:39:12,709 adding 'jcvi/utils/data/__init__.py' 2021-07-29T13:39:12,710 adding 'jcvi/utils/data/adapters.fasta' 2021-07-29T13:39:12,712 adding 'jcvi/utils/data/blosum80.mat' 2021-07-29T13:39:12,713 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-29T13:39:12,715 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-29T13:39:12,721 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-29T13:39:12,724 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-29T13:39:12,725 adding 'jcvi/utils/data/instance.json' 2021-07-29T13:39:12,727 adding 'jcvi/variation/__init__.py' 2021-07-29T13:39:12,728 adding 'jcvi/variation/__main__.py' 2021-07-29T13:39:12,733 adding 'jcvi/variation/cnv.py' 2021-07-29T13:39:12,735 adding 'jcvi/variation/deconvolute.py' 2021-07-29T13:39:12,737 adding 'jcvi/variation/delly.py' 2021-07-29T13:39:12,739 adding 'jcvi/variation/impute.py' 2021-07-29T13:39:12,740 adding 'jcvi/variation/phase.py' 2021-07-29T13:39:12,742 adding 'jcvi/variation/snp.py' 2021-07-29T13:39:12,749 adding 'jcvi/variation/str.py' 2021-07-29T13:39:12,751 adding 'jcvi/variation/tassel.py' 2021-07-29T13:39:12,753 adding 'jcvi-1.1.12.dist-info/LICENSE' 2021-07-29T13:39:12,755 adding 'jcvi-1.1.12.dist-info/METADATA' 2021-07-29T13:39:12,756 adding 'jcvi-1.1.12.dist-info/WHEEL' 2021-07-29T13:39:12,756 adding 'jcvi-1.1.12.dist-info/top_level.txt' 2021-07-29T13:39:12,760 adding 'jcvi-1.1.12.dist-info/RECORD' 2021-07-29T13:39:12,787 removing build/bdist.linux-armv7l/wheel 2021-07-29T13:39:13,088 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-29T13:39:13,106 Created wheel for jcvi: filename=jcvi-1.1.12-cp39-cp39-linux_armv7l.whl size=1233115 sha256=2f11dff6ca173bf1865858b1837ab30d4b8767e3da64b604962d8dee57008d10 2021-07-29T13:39:13,106 Stored in directory: /tmp/pip-ephem-wheel-cache-9rnudj0y/wheels/9a/c6/d4/27befeab983134209151b4852a5a99a113be1dbb2dce25c885 2021-07-29T13:39:13,123 Successfully built jcvi 2021-07-29T13:39:13,171 Removed build tracker: '/tmp/pip-req-tracker-wt4qgly5'