2021-07-29T13:54:48,148 Created temporary directory: /tmp/pip-ephem-wheel-cache-9dsa9nmo 2021-07-29T13:54:48,151 Created temporary directory: /tmp/pip-req-tracker-zfcucm8y 2021-07-29T13:54:48,151 Initialized build tracking at /tmp/pip-req-tracker-zfcucm8y 2021-07-29T13:54:48,151 Created build tracker: /tmp/pip-req-tracker-zfcucm8y 2021-07-29T13:54:48,152 Entered build tracker: /tmp/pip-req-tracker-zfcucm8y 2021-07-29T13:54:48,152 Created temporary directory: /tmp/pip-wheel-s9j6g6yl 2021-07-29T13:54:48,179 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T13:54:48,180 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T13:54:48,180 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T13:54:48,180 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T13:54:48,181 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T13:54:48,183 WARNING: Location '/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T13:54:48,183 WARNING: Location 't/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T13:54:48,184 WARNING: Location 'm/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T13:54:48,184 WARNING: Location 'p/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T13:54:48,184 1 location(s) to search for versions of asap3: 2021-07-29T13:54:48,184 * https://pypi.org/simple/asap3/ 2021-07-29T13:54:48,185 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-29T13:54:48,185 Getting page https://pypi.org/simple/asap3/ 2021-07-29T13:54:48,187 Found index url https://pypi.org/simple 2021-07-29T13:54:48,284 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-29T13:54:48,284 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-29T13:54:48,285 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-29T13:54:48,285 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-29T13:54:48,285 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-29T13:54:48,286 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-29T13:54:48,286 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-29T13:54:48,286 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-29T13:54:48,287 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-29T13:54:48,287 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-29T13:54:48,287 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-29T13:54:48,287 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-29T13:54:48,288 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-29T13:54:48,288 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-29T13:54:48,288 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-29T13:54:48,288 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-29T13:54:48,289 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-29T13:54:48,289 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-29T13:54:48,289 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-29T13:54:48,289 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-29T13:54:48,290 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-29T13:54:48,310 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-29T13:54:48,329 Collecting asap3==3.12.7 2021-07-29T13:54:48,330 Created temporary directory: /tmp/pip-unpack-3xobhcyt 2021-07-29T13:54:49,152 Downloading asap3-3.12.7.tar.gz (851 kB) 2021-07-29T13:54:50,452 Added asap3==3.12.7 from https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 to build tracker '/tmp/pip-req-tracker-zfcucm8y' 2021-07-29T13:54:50,453 Running setup.py (path:/tmp/pip-wheel-s9j6g6yl/asap3_21868aeb13d14794988d7c88a1445ea2/setup.py) egg_info for package asap3 2021-07-29T13:54:50,454 Created temporary directory: /tmp/pip-pip-egg-info-ixaz6jt1 2021-07-29T13:54:50,454 Running command python setup.py egg_info 2021-07-29T13:54:51,626 Asap version number: 3.12.7 2021-07-29T13:54:51,626 customize-local.py not found - this is OK. 2021-07-29T13:54:51,627 customize-piwheels34.py not found - this is OK. 2021-07-29T13:54:51,627 Reading customization from customize.py 2021-07-29T13:54:51,627 Setting CC=mpicxx -pthread 2021-07-29T13:54:51,627 Setting CXX=mpicxx -pthread 2021-07-29T13:54:51,627 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T13:54:51,627 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T13:54:51,627 Recording version info into VersionInfo_autogen 2021-07-29T13:54:51,627 CC = mpicxx -pthread 2021-07-29T13:54:51,628 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-29T13:54:51,628 Identifying source files 2021-07-29T13:54:51,628 Identifying Python submodules 2021-07-29T13:54:51,628 running egg_info 2021-07-29T13:54:51,628 creating /tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info 2021-07-29T13:54:51,629 writing /tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/PKG-INFO 2021-07-29T13:54:51,631 writing dependency_links to /tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/dependency_links.txt 2021-07-29T13:54:51,633 writing top-level names to /tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/top_level.txt 2021-07-29T13:54:51,635 writing manifest file '/tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/SOURCES.txt' 2021-07-29T13:54:52,006 reading manifest file '/tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/SOURCES.txt' 2021-07-29T13:54:52,008 reading manifest template 'MANIFEST.in' 2021-07-29T13:54:52,066 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T13:54:52,067 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T13:54:52,067 adding license file 'LICENSE' 2021-07-29T13:54:52,067 adding license file 'LICENSE.LESSER' 2021-07-29T13:54:52,088 writing manifest file '/tmp/pip-pip-egg-info-ixaz6jt1/asap3.egg-info/SOURCES.txt' 2021-07-29T13:54:52,197 Source in /tmp/pip-wheel-s9j6g6yl/asap3_21868aeb13d14794988d7c88a1445ea2 has version 3.12.7, which satisfies requirement asap3==3.12.7 from https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 2021-07-29T13:54:52,198 Removed asap3==3.12.7 from https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 from build tracker '/tmp/pip-req-tracker-zfcucm8y' 2021-07-29T13:54:52,202 Created temporary directory: /tmp/pip-unpack-en8gjjpz 2021-07-29T13:54:52,202 Building wheels for collected packages: asap3 2021-07-29T13:54:52,206 Created temporary directory: /tmp/pip-wheel-991ixflu 2021-07-29T13:54:52,207 Building wheel for asap3 (setup.py): started 2021-07-29T13:54:52,207 Destination directory: /tmp/pip-wheel-991ixflu 2021-07-29T13:54:52,207 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s9j6g6yl/asap3_21868aeb13d14794988d7c88a1445ea2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s9j6g6yl/asap3_21868aeb13d14794988d7c88a1445ea2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-991ixflu 2021-07-29T13:54:53,174 Asap version number: 3.12.7 2021-07-29T13:54:53,175 customize-local.py not found - this is OK. 2021-07-29T13:54:53,175 customize-piwheels34.py not found - this is OK. 2021-07-29T13:54:53,175 Reading customization from customize.py 2021-07-29T13:54:53,178 Setting CC=mpicxx -pthread 2021-07-29T13:54:53,178 Setting CXX=mpicxx -pthread 2021-07-29T13:54:53,178 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T13:54:53,179 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T13:54:53,192 Identifying source files 2021-07-29T13:54:53,195 Identifying Python submodules 2021-07-29T13:54:53,356 running bdist_wheel 2021-07-29T13:54:53,549 running build 2021-07-29T13:54:53,549 running build_py 2021-07-29T13:54:53,681 creating build 2021-07-29T13:54:53,681 creating build/lib.linux-armv7l-3.9 2021-07-29T13:54:53,682 creating build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,683 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,684 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,686 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,689 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,691 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,693 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,695 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,697 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,698 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,700 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,702 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,704 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T13:54:53,707 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,708 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,710 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,712 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,714 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,716 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,718 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,721 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,722 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T13:54:53,725 creating build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T13:54:53,726 copying Python/asap3/visualize/fieldplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T13:54:53,729 copying Python/asap3/visualize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T13:54:53,730 copying Python/asap3/visualize/colortable.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T13:54:53,734 copying Python/asap3/visualize/primiplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T13:54:53,738 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,739 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,741 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,744 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,746 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,749 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,750 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,753 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,755 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,757 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T13:54:53,761 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,762 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,765 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,767 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,769 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,771 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,773 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,775 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,777 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,778 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,781 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,783 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,786 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,787 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,789 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T13:54:53,792 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T13:54:53,793 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T13:54:53,796 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,796 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,799 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,801 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,802 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,804 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T13:54:53,808 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,809 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,811 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,813 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,815 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,818 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,820 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,822 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,824 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,826 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T13:54:53,829 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,830 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,832 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,835 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,837 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,840 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T13:54:53,842 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,843 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,845 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,847 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,849 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,851 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T13:54:53,854 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T13:54:53,855 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T13:54:53,858 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T13:54:53,860 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T13:54:53,863 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T13:54:53,864 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T13:54:53,867 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T13:54:53,869 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T13:54:53,871 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T13:54:53,872 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T13:54:53,874 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T13:54:53,876 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T13:54:53,877 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T13:54:53,880 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,881 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,883 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,886 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,888 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,891 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,892 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,894 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,896 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,897 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T13:54:53,900 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T13:54:53,901 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T13:54:53,903 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T13:54:53,905 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T13:54:53,907 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T13:54:53,910 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:54:53,911 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:54:53,914 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:54:53,917 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:54:53,920 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,921 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,923 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,926 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,928 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,930 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,932 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,934 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,936 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,938 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,940 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T13:54:53,944 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,944 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,947 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,951 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,953 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,956 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,958 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,960 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,962 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,966 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,968 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,970 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T13:54:53,987 running build_ext 2021-07-29T13:54:53,994 building '_asap' extension 2021-07-29T13:54:53,996 creating build/temp.linux-armv7l-3.9 2021-07-29T13:54:53,996 creating build/temp.linux-armv7l-3.9/Basics 2021-07-29T13:54:53,998 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-29T13:54:53,999 creating build/temp.linux-armv7l-3.9/Interface 2021-07-29T13:54:54,000 creating build/temp.linux-armv7l-3.9/PTM 2021-07-29T13:54:54,001 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-29T13:54:54,001 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-29T13:54:54,002 creating build/temp.linux-armv7l-3.9/Parallel 2021-07-29T13:54:54,003 creating build/temp.linux-armv7l-3.9/ParallelInterface 2021-07-29T13:54:54,003 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-29T13:54:54,004 creating build/temp.linux-armv7l-3.9/Tools 2021-07-29T13:54:54,005 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-29T13:54:54,005 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-29T13:54:55,310 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-29T13:54:56,903 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-29T13:54:59,629 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-29T13:55:01,874 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-29T13:55:03,417 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:03,417 from Basics/ImageAtoms.h:31, 2021-07-29T13:55:03,417 from Basics/ImageAtoms.cpp:27: 2021-07-29T13:55:03,417 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-29T13:55:03,417 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-29T13:55:03,417 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T13:55:03,417 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:03,418 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T13:55:03,418 52 | ASSERT(refcount == 0); 2021-07-29T13:55:03,418 | ^~~~~~ 2021-07-29T13:55:03,418 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-29T13:55:03,418 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T13:55:03,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:03,418 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T13:55:03,419 52 | ASSERT(refcount == 0); 2021-07-29T13:55:03,419 | ^~~~~~ 2021-07-29T13:55:03,421 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T13:55:03,421 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,421 82 | if (pos.capacity() < nTot) 2021-07-29T13:55:03,421 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T13:55:03,422 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:03,422 from Basics/ImageAtoms.h:31, 2021-07-29T13:55:03,422 from Basics/ImageAtoms.cpp:27: 2021-07-29T13:55:03,422 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,422 84 | ASSERT(allpositions.size() >= nTot); 2021-07-29T13:55:03,422 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:55:03,422 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,423 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,423 | ^~ 2021-07-29T13:55:03,428 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,428 86 | ASSERT(pos.size() == nTot); 2021-07-29T13:55:03,428 | ~~~~~~~~~~~^~~~~~~ 2021-07-29T13:55:03,428 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,429 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,429 | ^~ 2021-07-29T13:55:03,430 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T13:55:03,430 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,430 95 | ASSERT(allpositions.size() >= n); 2021-07-29T13:55:03,430 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T13:55:03,431 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,431 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,431 | ^~ 2021-07-29T13:55:03,432 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,432 97 | if (pos.capacity() < n) 2021-07-29T13:55:03,432 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:03,452 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:03,452 from Basics/ImageAtoms.h:31, 2021-07-29T13:55:03,452 from Basics/ImageAtoms.cpp:27: 2021-07-29T13:55:03,453 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-29T13:55:03,453 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,453 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-29T13:55:03,453 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:03,453 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,453 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,453 | ^~ 2021-07-29T13:55:03,458 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,458 221 | if (allpositions.capacity() < nSize) 2021-07-29T13:55:03,458 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:55:03,458 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,459 223 | if (allnumbers.capacity() < nSize) 2021-07-29T13:55:03,459 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:55:03,461 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:03,461 from Basics/ImageAtoms.h:31, 2021-07-29T13:55:03,461 from Basics/ImageAtoms.cpp:27: 2021-07-29T13:55:03,461 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-29T13:55:03,461 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,461 238 | ASSERT(allpositions.size() <= nSize); 2021-07-29T13:55:03,462 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:55:03,462 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,462 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,462 | ^~ 2021-07-29T13:55:03,463 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:03,463 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-29T13:55:03,463 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:03,463 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:03,463 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:03,463 | ^~ 2021-07-29T13:55:05,987 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-29T13:55:07,648 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-29T13:55:07,648 Basics/ImagePotential.cpp:93:38: required from here 2021-07-29T13:55:07,648 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:07,648 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-29T13:55:07,649 | ~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:55:07,655 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-29T13:55:07,655 Basics/ImagePotential.cpp:118:45: required from here 2021-07-29T13:55:07,655 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:09,176 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-29T13:55:11,734 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-29T13:55:12,856 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-29T13:55:14,319 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:14,320 from Basics/MolecularDynamics.h:30, 2021-07-29T13:55:14,320 from Basics/MolecularDynamics.cpp:27: 2021-07-29T13:55:14,320 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-29T13:55:14,320 Basics/MolecularDynamics.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:14,320 237 | ASSERT(n == obs_kwargs.size()); 2021-07-29T13:55:14,320 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:14,320 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:14,321 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:14,321 | ^~ 2021-07-29T13:55:15,648 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-29T13:55:18,244 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-29T13:55:19,973 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-29T13:55:19,973 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:19,974 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T13:55:19,974 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:19,977 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:19,977 from Basics/NeighborCellLocator.h:35, 2021-07-29T13:55:19,977 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T13:55:19,977 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-29T13:55:19,977 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:19,978 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T13:55:19,978 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T13:55:19,978 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:19,978 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:19,978 | ^~ 2021-07-29T13:55:19,988 Basics/NeighborCellLocator.cpp:324:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:19,989 324 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-29T13:55:19,989 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:55:19,989 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:19,989 from Basics/NeighborCellLocator.h:35, 2021-07-29T13:55:19,989 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T13:55:19,990 Basics/NeighborCellLocator.cpp:335:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:19,990 335 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-29T13:55:19,990 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:55:19,990 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:19,990 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:19,990 | ^~ 2021-07-29T13:55:19,990 Basics/NeighborCellLocator.cpp:336:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:19,991 336 | for (int i = 0; i < cells.size(); i++) 2021-07-29T13:55:19,991 | ~~^~~~~~~~~~~~~~ 2021-07-29T13:55:19,991 Basics/NeighborCellLocator.cpp:372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:19,992 372 | for (int i = 0; i < cells.size(); i++) 2021-07-29T13:55:19,992 | ~~^~~~~~~~~~~~~~ 2021-07-29T13:55:20,008 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-29T13:55:20,009 Basics/NeighborCellLocator.cpp:487:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:20,009 487 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T13:55:20,009 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:20,009 Basics/NeighborCellLocator.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:20,009 490 | for (int i = 0; i < cells.size(); i++) 2021-07-29T13:55:20,009 | ~~^~~~~~~~~~~~~~ 2021-07-29T13:55:20,070 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:20,070 from Basics/NeighborCellLocator.h:35, 2021-07-29T13:55:20,071 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T13:55:20,071 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-29T13:55:20,071 Basics/NeighborCellLocator.cpp:1041:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,071 1041 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T13:55:20,071 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T13:55:20,071 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:20,071 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:20,072 | ^~ 2021-07-29T13:55:20,072 Basics/NeighborCellLocator.cpp:1048:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,072 1048 | if (wrappedPositions.capacity() < spsz) 2021-07-29T13:55:20,072 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T13:55:20,072 Basics/NeighborCellLocator.cpp:1051:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,072 1051 | if (offsetPositions.capacity() < spsz) 2021-07-29T13:55:20,073 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T13:55:20,074 Basics/NeighborCellLocator.cpp:1088:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,074 1088 | if (wrappedPositions.capacity() < spsz) 2021-07-29T13:55:20,074 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T13:55:20,074 Basics/NeighborCellLocator.cpp:1091:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,074 1091 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-29T13:55:20,075 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T13:55:20,090 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:20,090 from Basics/NeighborCellLocator.h:35, 2021-07-29T13:55:20,090 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T13:55:20,090 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-29T13:55:20,091 Basics/NeighborCellLocator.cpp:1263:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,091 1263 | ASSERT(referencePositions.size() == nAtoms); 2021-07-29T13:55:20,091 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:55:20,091 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:20,091 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:20,091 | ^~ 2021-07-29T13:55:20,091 Basics/NeighborCellLocator.cpp:1264:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,092 1264 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-29T13:55:20,092 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T13:55:20,092 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:20,092 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:20,092 | ^~ 2021-07-29T13:55:20,094 Basics/NeighborCellLocator.cpp:1281:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,094 1281 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-29T13:55:20,095 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T13:55:20,095 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:20,095 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:20,095 | ^~ 2021-07-29T13:55:20,110 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-29T13:55:20,110 Basics/NeighborCellLocator.cpp:1412:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,111 1412 | if (referencePositions.size() > n) 2021-07-29T13:55:20,111 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:20,112 Basics/NeighborCellLocator.cpp:1414:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,112 1414 | if (wrappedPositions.size() > n) 2021-07-29T13:55:20,112 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:20,113 Basics/NeighborCellLocator.cpp:1416:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,113 1416 | if (scaledPositions.size() > n) 2021-07-29T13:55:20,114 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:20,114 Basics/NeighborCellLocator.cpp:1418:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,115 1418 | if (offsetPositions.size() > n) 2021-07-29T13:55:20,115 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:20,116 Basics/NeighborCellLocator.cpp:1420:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,116 1420 | if (scaledOffsetPositions.size() > n) 2021-07-29T13:55:20,116 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:20,121 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-29T13:55:20,121 Basics/NeighborCellLocator.cpp:1452:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:20,122 1452 | if (i->size() > longest) 2021-07-29T13:55:20,122 | ~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:55:20,737 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:20,737 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:55:20,737 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T13:55:20,737 Interface/Templates.h: At global scope: 2021-07-29T13:55:20,738 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:20,738 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:20,738 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:27,095 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-29T13:55:28,802 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-29T13:55:28,802 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,802 126 | if (nAllAtoms != nbList.size()) 2021-07-29T13:55:28,803 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,803 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,803 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-29T13:55:28,803 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,823 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,823 200 | if (nbList[i].capacity() < reservedLength) 2021-07-29T13:55:28,823 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,824 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,824 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-29T13:55:28,824 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,831 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T13:55:28,832 Basics/NeighborList.cpp:359:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,832 359 | if (size < nbList[a1].size()) 2021-07-29T13:55:28,832 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,841 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T13:55:28,842 Basics/NeighborList.cpp:479:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,842 479 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-29T13:55:28,842 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,879 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-29T13:55:28,879 Basics/NeighborList.cpp:626:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T13:55:28,879 626 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T13:55:28,882 Basics/NeighborList.cpp:656:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T13:55:28,883 656 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T13:55:28,899 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-29T13:55:28,899 Basics/NeighborList.cpp:757:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,899 757 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T13:55:28,900 Basics/NeighborList.cpp:759:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,900 759 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T13:55:28,912 Basics/NeighborList.cpp:796:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,912 796 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T13:55:28,913 Basics/NeighborList.cpp:798:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:55:28,913 798 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T13:55:28,924 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-29T13:55:28,924 Basics/NeighborList.cpp:835:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,925 835 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-29T13:55:28,925 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,927 Basics/NeighborList.cpp:841:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,927 841 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-29T13:55:28,927 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:28,937 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-29T13:55:28,938 Basics/NeighborList.cpp:911:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:28,938 911 | for (int i = 0; i < translationTable.size(); i++) 2021-07-29T13:55:28,938 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:29,411 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:29,411 from Basics/NeighborList.h:37, 2021-07-29T13:55:29,412 from Basics/NeighborList.cpp:29: 2021-07-29T13:55:29,412 Interface/Templates.h: At global scope: 2021-07-29T13:55:29,412 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:29,412 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:29,412 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:30,527 In file included from /usr/include/c++/10/vector:72, 2021-07-29T13:55:30,527 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:30,527 from Basics/Atoms.h:36, 2021-07-29T13:55:30,527 from Basics/NeighborLocator.h:41, 2021-07-29T13:55:30,528 from Basics/NeighborList.h:37, 2021-07-29T13:55:30,528 from Basics/NeighborList.cpp:29: 2021-07-29T13:55:30,528 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T13:55:30,528 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:30,528 721 | vector<_Tp, _Alloc>:: 2021-07-29T13:55:30,528 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:30,529 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:30,529 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:30,626 In file included from /usr/include/c++/10/vector:67, 2021-07-29T13:55:30,626 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:30,626 from Basics/Atoms.h:36, 2021-07-29T13:55:30,627 from Basics/NeighborLocator.h:41, 2021-07-29T13:55:30,627 from Basics/NeighborList.h:37, 2021-07-29T13:55:30,627 from Basics/NeighborList.cpp:29: 2021-07-29T13:55:30,627 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T13:55:30,627 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:30,627 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:30,627 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:30,627 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:30,628 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:30,628 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:30,644 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T13:55:30,644 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:30,644 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:30,644 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:30,644 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:30,644 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:30,645 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:33,519 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-29T13:55:35,213 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T13:55:35,214 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:55:35,214 33 | if (size < nbList[a1].size()) 2021-07-29T13:55:35,214 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,422 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:35,422 from Basics/NeighborList.h:37, 2021-07-29T13:55:35,422 from Basics/NeighborList2013.h:11, 2021-07-29T13:55:35,422 from Basics/NeighborList2013.cpp:8: 2021-07-29T13:55:35,423 Interface/Templates.h: At global scope: 2021-07-29T13:55:35,423 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:35,423 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:35,423 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:35,849 In file included from /usr/include/c++/10/vector:72, 2021-07-29T13:55:35,849 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:35,849 from Basics/Atoms.h:36, 2021-07-29T13:55:35,849 from Basics/NeighborLocator.h:41, 2021-07-29T13:55:35,849 from Basics/NeighborList.h:37, 2021-07-29T13:55:35,849 from Basics/NeighborList2013.h:11, 2021-07-29T13:55:35,849 from Basics/NeighborList2013.cpp:8: 2021-07-29T13:55:35,849 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T13:55:35,850 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:35,850 721 | vector<_Tp, _Alloc>:: 2021-07-29T13:55:35,850 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,850 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:35,850 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:35,944 In file included from /usr/include/c++/10/vector:67, 2021-07-29T13:55:35,944 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:35,944 from Basics/Atoms.h:36, 2021-07-29T13:55:35,944 from Basics/NeighborLocator.h:41, 2021-07-29T13:55:35,944 from Basics/NeighborList.h:37, 2021-07-29T13:55:35,944 from Basics/NeighborList2013.h:11, 2021-07-29T13:55:35,945 from Basics/NeighborList2013.cpp:8: 2021-07-29T13:55:35,945 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T13:55:35,945 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:35,945 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:35,945 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,945 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:35,945 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,946 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:35,961 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T13:55:35,961 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:35,961 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:35,961 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,962 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:35,962 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:35,962 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:36,456 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-29T13:55:38,011 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T13:55:38,011 Basics/NormalAtoms.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,011 427 | if (numbers.size() != nAtoms+nGhosts) 2021-07-29T13:55:38,011 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:55:38,014 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T13:55:38,015 Basics/NormalAtoms.cpp:472:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,015 472 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-29T13:55:38,015 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:55:38,018 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:38,018 from Basics/NormalAtoms.cpp:27: 2021-07-29T13:55:38,019 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T13:55:38,019 Basics/NormalAtoms.cpp:530:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,019 530 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-29T13:55:38,019 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:38,019 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:38,019 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:38,019 | ^~ 2021-07-29T13:55:38,020 Basics/NormalAtoms.cpp:531:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,020 531 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-29T13:55:38,020 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:38,023 Basics/NormalAtoms.cpp:537:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T13:55:38,024 537 | if (pos.capacity() < nAtoms) 2021-07-29T13:55:38,024 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:55:38,024 In file included from Basics/AsapPython.h:44, 2021-07-29T13:55:38,025 from Basics/NormalAtoms.cpp:27: 2021-07-29T13:55:38,025 Basics/NormalAtoms.cpp:540:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T13:55:38,025 540 | ASSERT(pos.size() == nAtoms); 2021-07-29T13:55:38,025 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:55:38,025 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:38,025 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:38,025 | ^~ 2021-07-29T13:55:38,026 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T13:55:38,026 Basics/NormalAtoms.cpp:552:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,026 552 | ASSERT(positions.size() >= n); 2021-07-29T13:55:38,026 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T13:55:38,026 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:55:38,026 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:55:38,027 | ^~ 2021-07-29T13:55:38,027 Basics/NormalAtoms.cpp:554:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:55:38,027 554 | if (pos.capacity() < n) 2021-07-29T13:55:38,027 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T13:55:39,492 In file included from /usr/include/c++/10/vector:72, 2021-07-29T13:55:39,492 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:39,492 from Basics/NormalAtoms.h:33, 2021-07-29T13:55:39,492 from Basics/NormalAtoms.cpp:29: 2021-07-29T13:55:39,492 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T13:55:39,492 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:39,493 721 | vector<_Tp, _Alloc>:: 2021-07-29T13:55:39,493 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:39,493 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:39,493 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:40,620 In file included from /usr/include/c++/10/vector:67, 2021-07-29T13:55:40,620 from Basics/AtomsBasis.h:33, 2021-07-29T13:55:40,620 from Basics/NormalAtoms.h:33, 2021-07-29T13:55:40,620 from Basics/NormalAtoms.cpp:29: 2021-07-29T13:55:40,620 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T13:55:40,621 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:40,621 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:40,621 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:40,621 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:40,621 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:40,621 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:40,621 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:55:40,621 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T13:55:40,622 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:40,622 1666 | std::__iterator_category(__first)); 2021-07-29T13:55:40,622 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:55:40,622 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:55:41,733 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-29T13:55:43,522 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-29T13:55:45,245 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-29T13:55:46,349 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-29T13:55:48,657 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-29T13:55:50,740 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:50,740 from Basics/NeighborList.h:37, 2021-07-29T13:55:50,740 from Brenner/BrennerPotential.h:32, 2021-07-29T13:55:50,740 from Brenner/BrennerPotential.cpp:26: 2021-07-29T13:55:50,740 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:50,740 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:50,740 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:51,879 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-29T13:55:53,998 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:53,998 from Basics/NeighborList.h:37, 2021-07-29T13:55:53,998 from Brenner/BrennerPotential.h:32, 2021-07-29T13:55:53,999 from Brenner/bcuint.cpp:27: 2021-07-29T13:55:53,999 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:53,999 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:53,999 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:54,562 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-29T13:55:56,570 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:55:56,570 from Basics/NeighborList.h:37, 2021-07-29T13:55:56,570 from Brenner/BrennerPotential.h:32, 2021-07-29T13:55:56,571 from Brenner/caguts.cpp:44: 2021-07-29T13:55:56,571 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:55:56,571 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:55:56,571 | ^~~~~~~~~~~~~~ 2021-07-29T13:55:57,470 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-29T13:55:58,756 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-29T13:55:58,879 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-29T13:56:00,776 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:00,776 from Basics/NeighborList.h:37, 2021-07-29T13:56:00,776 from Brenner/BrennerPotential.h:32, 2021-07-29T13:56:00,776 from Brenner/mtable.cpp:7: 2021-07-29T13:56:00,776 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:00,777 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:00,777 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:01,371 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-29T13:56:03,431 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:03,432 from Basics/NeighborList.h:37, 2021-07-29T13:56:03,432 from Brenner/BrennerPotential.h:32, 2021-07-29T13:56:03,432 from Brenner/pibond.cpp:7: 2021-07-29T13:56:03,432 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:03,432 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:03,432 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:05,789 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-29T13:56:07,700 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:07,700 from Basics/NeighborList.h:37, 2021-07-29T13:56:07,700 from Brenner/BrennerPotential.h:32, 2021-07-29T13:56:07,700 from Brenner/asapbrenner.h:7, 2021-07-29T13:56:07,700 from Brenner/radic.cpp:27: 2021-07-29T13:56:07,700 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:07,701 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:07,701 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:08,237 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-29T13:56:08,752 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-29T13:56:10,728 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:10,728 from Basics/NeighborList.h:37, 2021-07-29T13:56:10,729 from Brenner/BrennerPotential.h:32, 2021-07-29T13:56:10,729 from Brenner/sili_germ.cpp:7: 2021-07-29T13:56:10,729 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:10,729 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:10,729 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:11,342 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-29T13:56:13,201 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:13,201 from Basics/NeighborList.h:37, 2021-07-29T13:56:13,202 from Brenner/BrennerPotential.h:32, 2021-07-29T13:56:13,202 from Brenner/asapbrenner.h:7, 2021-07-29T13:56:13,202 from Brenner/spgch.h:4, 2021-07-29T13:56:13,202 from Brenner/spgch.cpp:1: 2021-07-29T13:56:13,202 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:13,202 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:13,202 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:13,328 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-29T13:56:14,862 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:14,862 from Interface/DynamicsInterface.h:29, 2021-07-29T13:56:14,862 from Interface/DynamicsInterface.cpp:26: 2021-07-29T13:56:14,863 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:14,863 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:14,863 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:14,863 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:14,863 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:14,863 | ^~ 2021-07-29T13:56:14,864 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:14,864 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:14,864 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:14,864 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:14,864 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:14,865 | ^~ 2021-07-29T13:56:14,872 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:14,872 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:14,872 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:14,872 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:14,873 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:14,873 | ^~ 2021-07-29T13:56:14,874 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:14,874 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:14,874 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:14,874 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:14,874 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:14,875 | ^~ 2021-07-29T13:56:14,884 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:14,885 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:14,885 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:14,885 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:14,885 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:14,885 | ^~ 2021-07-29T13:56:14,890 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,890 Interface/DynamicsInterface.cpp:72:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,891 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T13:56:14,891 | ^~~~~~~ 2021-07-29T13:56:14,891 Interface/DynamicsInterface.cpp:72:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,891 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T13:56:14,891 | ^~~~~~ 2021-07-29T13:56:14,891 Interface/DynamicsInterface.cpp:72:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,892 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T13:56:14,892 | ^~~~~~~~~~ 2021-07-29T13:56:14,892 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,892 Interface/DynamicsInterface.cpp:111:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,893 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,893 | ^~~~~~~ 2021-07-29T13:56:14,893 Interface/DynamicsInterface.cpp:111:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,893 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,893 | ^~~~~~ 2021-07-29T13:56:14,893 Interface/DynamicsInterface.cpp:111:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,893 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,894 | ^~~~~~~~~~ 2021-07-29T13:56:14,894 Interface/DynamicsInterface.cpp:111:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,894 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,894 | ^~~~~~~ 2021-07-29T13:56:14,894 Interface/DynamicsInterface.cpp:111:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,894 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,894 | ^~~~~~~ 2021-07-29T13:56:14,895 Interface/DynamicsInterface.cpp:111:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,895 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,895 | ^~~~ 2021-07-29T13:56:14,895 Interface/DynamicsInterface.cpp:111:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,895 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,895 | ^~~~ 2021-07-29T13:56:14,895 Interface/DynamicsInterface.cpp:111:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,896 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,896 | ^~~~~~~ 2021-07-29T13:56:14,896 Interface/DynamicsInterface.cpp:111:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,896 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T13:56:14,896 | ^~~~~~ 2021-07-29T13:56:14,896 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,896 Interface/DynamicsInterface.cpp:157:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,897 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T13:56:14,897 | ^~~~~~~ 2021-07-29T13:56:14,897 Interface/DynamicsInterface.cpp:157:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,897 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T13:56:14,897 | ^~~~~~~~~~~ 2021-07-29T13:56:14,897 Interface/DynamicsInterface.cpp:157:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,897 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T13:56:14,898 | ^~~~~ 2021-07-29T13:56:14,898 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,898 Interface/DynamicsInterface.cpp:185:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,898 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,898 | ^~~~~~ 2021-07-29T13:56:14,898 Interface/DynamicsInterface.cpp:185:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,898 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,899 | ^~~~ 2021-07-29T13:56:14,899 Interface/DynamicsInterface.cpp:185:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,899 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,899 | ^~~~ 2021-07-29T13:56:14,899 Interface/DynamicsInterface.cpp:185:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,899 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,899 | ^~~~~~~ 2021-07-29T13:56:14,900 Interface/DynamicsInterface.cpp:185:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,900 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,900 | ^~~~~~ 2021-07-29T13:56:14,900 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,900 Interface/DynamicsInterface.cpp:209:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,900 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,900 | ^~~~~~ 2021-07-29T13:56:14,901 Interface/DynamicsInterface.cpp:209:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,901 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,901 | ^~~~ 2021-07-29T13:56:14,901 Interface/DynamicsInterface.cpp:209:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,901 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,901 | ^~~~ 2021-07-29T13:56:14,901 Interface/DynamicsInterface.cpp:209:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,901 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,902 | ^~~~~~~ 2021-07-29T13:56:14,902 Interface/DynamicsInterface.cpp:209:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,902 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T13:56:14,902 | ^~~~~~ 2021-07-29T13:56:14,902 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:14,902 Interface/DynamicsInterface.cpp:246:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:14,902 246 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-29T13:56:14,903 | ^~~~~~~~~~ 2021-07-29T13:56:15,620 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-29T13:56:17,109 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:17,109 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-29T13:56:17,109 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:17,110 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:17,110 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:17,110 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:17,110 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:17,110 | ^~ 2021-07-29T13:56:17,119 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:17,120 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:17,120 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:17,120 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:17,120 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:17,120 | ^~ 2021-07-29T13:56:17,128 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:17,129 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:17,129 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:17,129 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:17,129 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:17,129 | ^~ 2021-07-29T13:56:17,139 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:17,139 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:17,139 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:17,140 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:17,140 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:17,140 | ^~ 2021-07-29T13:56:17,149 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:17,150 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:17,150 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:17,150 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:17,150 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:17,150 | ^~ 2021-07-29T13:56:17,566 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-29T13:56:19,096 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-29T13:56:20,601 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:20,601 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-29T13:56:20,602 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:20,602 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:20,602 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:20,602 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:20,602 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:20,602 | ^~ 2021-07-29T13:56:20,612 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:20,612 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:20,612 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:20,612 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:20,612 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:20,613 | ^~ 2021-07-29T13:56:20,621 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:20,621 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:20,621 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:20,621 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:20,621 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:20,621 | ^~ 2021-07-29T13:56:20,631 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:20,632 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:20,632 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:20,632 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:20,632 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:20,632 | ^~ 2021-07-29T13:56:20,642 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:20,642 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:20,642 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:20,642 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:20,643 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:20,643 | ^~ 2021-07-29T13:56:20,843 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:20,843 Interface/NeighborLocatorInterface.cpp:160:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,844 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T13:56:20,844 | ^~~~~~ 2021-07-29T13:56:20,844 Interface/NeighborLocatorInterface.cpp:160:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,844 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T13:56:20,844 | ^~~~~~~ 2021-07-29T13:56:20,844 Interface/NeighborLocatorInterface.cpp:160:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,845 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T13:56:20,845 | ^~~~~~~~~~~~~ 2021-07-29T13:56:20,845 Interface/NeighborLocatorInterface.cpp:160:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,845 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T13:56:20,845 | ^~~~~~ 2021-07-29T13:56:20,846 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:20,846 Interface/NeighborLocatorInterface.cpp:211:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,846 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:56:20,847 | ^~~~~~ 2021-07-29T13:56:20,847 Interface/NeighborLocatorInterface.cpp:211:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,847 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:56:20,847 | ^~~~~~~ 2021-07-29T13:56:20,847 Interface/NeighborLocatorInterface.cpp:211:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,847 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:56:20,848 | ^~~~~~~~~~~~~ 2021-07-29T13:56:20,881 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNBQuery(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:20,881 Interface/NeighborLocatorInterface.cpp:390:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,881 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T13:56:20,881 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:20,881 Interface/NeighborLocatorInterface.cpp:390:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,882 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T13:56:20,882 | ^~~~~~ 2021-07-29T13:56:20,887 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:20,887 Interface/NeighborLocatorInterface.cpp:481:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,887 481 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T13:56:20,888 | ^~~ 2021-07-29T13:56:20,888 Interface/NeighborLocatorInterface.cpp:481:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:20,888 481 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T13:56:20,888 | ^~~~~~ 2021-07-29T13:56:23,324 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-29T13:56:24,634 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:24,634 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:24,634 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T13:56:24,634 | ^~~ 2021-07-29T13:56:24,635 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:24,635 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T13:56:24,635 | ^~~~~~~~~~~~ 2021-07-29T13:56:24,877 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-29T13:56:26,555 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:26,555 Interface/PTMInterface.cpp:95:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,555 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T13:56:26,555 | ^~~~~~~ 2021-07-29T13:56:26,556 Interface/PTMInterface.cpp:95:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,556 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T13:56:26,556 | ^~~~~~~~ 2021-07-29T13:56:26,556 Interface/PTMInterface.cpp:95:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,556 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T13:56:26,556 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:56:26,556 Interface/PTMInterface.cpp:96:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,557 96 | "calculate_strains", "quick", 2021-07-29T13:56:26,557 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:56:26,557 Interface/PTMInterface.cpp:96:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,557 96 | "calculate_strains", "quick", 2021-07-29T13:56:26,557 | ^~~~~~~ 2021-07-29T13:56:26,557 Interface/PTMInterface.cpp:97:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,557 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T13:56:26,558 | ^~~~~~~~~~~~~~~ 2021-07-29T13:56:26,558 Interface/PTMInterface.cpp:97:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:26,558 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T13:56:26,558 | ^~~~~~~~~~~~~~~~~ 2021-07-29T13:56:26,581 In file included from /usr/include/python3.9/Python.h:61, 2021-07-29T13:56:26,581 from Basics/AsapPython.h:38, 2021-07-29T13:56:26,581 from Interface/PTMInterface.h:30, 2021-07-29T13:56:26,581 from Interface/PTMInterface.cpp:1: 2021-07-29T13:56:26,581 Interface/PTMInterface.cpp:299:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:56:26,582 299 | assert(m < indices.size()); 2021-07-29T13:56:26,582 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T13:56:26,582 Interface/PTMInterface.cpp:301:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:56:26,582 301 | assert(idx >= 0 && idx < indices.size()); 2021-07-29T13:56:26,582 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:56:26,806 Interface/PTMInterface.cpp: At global scope: 2021-07-29T13:56:26,806 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:26,806 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-29T13:56:26,806 | ^~~~~ 2021-07-29T13:56:26,807 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:56:26,807 from Interface/PTMInterface.cpp:4: 2021-07-29T13:56:26,807 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:56:26,807 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:56:26,807 | ^~~~~~~~~~~~~~ 2021-07-29T13:56:28,345 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-29T13:56:29,910 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:29,910 from Interface/PotentialInterface.cpp:29: 2021-07-29T13:56:29,911 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:29,911 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:29,911 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:29,911 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:29,911 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:29,911 | ^~ 2021-07-29T13:56:29,921 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:29,921 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:29,921 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:29,921 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:29,921 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:29,922 | ^~ 2021-07-29T13:56:29,929 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:29,930 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:29,930 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:29,930 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:29,930 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:29,930 | ^~ 2021-07-29T13:56:29,940 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:29,941 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:29,941 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:29,941 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:29,941 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:29,941 | ^~ 2021-07-29T13:56:29,951 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:29,951 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:29,951 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:29,951 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:29,951 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:29,951 | ^~ 2021-07-29T13:56:30,207 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,207 Interface/PotentialInterface.cpp:201:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,207 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T13:56:30,207 | ^~~~~~ 2021-07-29T13:56:30,207 Interface/PotentialInterface.cpp:201:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,208 201 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T13:56:30,208 | ^~~~~~~~~ 2021-07-29T13:56:30,209 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,209 Interface/PotentialInterface.cpp:234:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,209 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T13:56:30,210 | ^~~~~~~~~~~~ 2021-07-29T13:56:30,210 Interface/PotentialInterface.cpp:234:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,210 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T13:56:30,210 | ^~~~~~~~~~~~~~~~~ 2021-07-29T13:56:30,210 Interface/PotentialInterface.cpp:234:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,210 234 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T13:56:30,210 | ^~~~~~~~~ 2021-07-29T13:56:30,211 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,211 Interface/PotentialInterface.cpp:270:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,212 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T13:56:30,212 | ^~~~~~ 2021-07-29T13:56:30,212 Interface/PotentialInterface.cpp:270:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,212 270 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T13:56:30,212 | ^~~~~~~~~ 2021-07-29T13:56:30,213 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,213 Interface/PotentialInterface.cpp:291:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,213 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,213 | ^~~~~~~~~~ 2021-07-29T13:56:30,213 Interface/PotentialInterface.cpp:291:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,214 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,214 | ^~~ 2021-07-29T13:56:30,214 Interface/PotentialInterface.cpp:291:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,214 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,214 | ^~~ 2021-07-29T13:56:30,214 Interface/PotentialInterface.cpp:291:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,214 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,214 | ^~~ 2021-07-29T13:56:30,215 Interface/PotentialInterface.cpp:291:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,215 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,215 | ^~~~~~ 2021-07-29T13:56:30,215 Interface/PotentialInterface.cpp:291:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,215 291 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T13:56:30,215 | ^~~~ 2021-07-29T13:56:30,216 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,216 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,216 | ^~~~ 2021-07-29T13:56:30,216 Interface/PotentialInterface.cpp:292:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,216 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,216 | ^~~~ 2021-07-29T13:56:30,216 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,217 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,217 | ^~~~ 2021-07-29T13:56:30,217 Interface/PotentialInterface.cpp:292:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,217 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,217 | ^~~~ 2021-07-29T13:56:30,217 Interface/PotentialInterface.cpp:292:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,217 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,217 | ^~~~ 2021-07-29T13:56:30,218 Interface/PotentialInterface.cpp:292:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,218 292 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T13:56:30,218 | ^~~~ 2021-07-29T13:56:30,218 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,218 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T13:56:30,218 | ^~~~~ 2021-07-29T13:56:30,218 Interface/PotentialInterface.cpp:293:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,219 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T13:56:30,219 | ^~~~~ 2021-07-29T13:56:30,219 Interface/PotentialInterface.cpp:293:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,219 293 | "rcs", "rce", "verbose", NULL}; 2021-07-29T13:56:30,219 | ^~~~~~~~~ 2021-07-29T13:56:30,221 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,221 Interface/PotentialInterface.cpp:355:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,221 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T13:56:30,221 | ^~~~~~~~~~~~~ 2021-07-29T13:56:30,222 Interface/PotentialInterface.cpp:355:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,222 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T13:56:30,222 | ^~~~~~~~~~ 2021-07-29T13:56:30,222 Interface/PotentialInterface.cpp:355:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,222 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T13:56:30,222 | ^~~~~~~~~ 2021-07-29T13:56:30,222 Interface/PotentialInterface.cpp:355:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,223 355 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T13:56:30,223 | ^~~~~~~ 2021-07-29T13:56:30,223 Interface/PotentialInterface.cpp:356:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,223 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,223 | ^~~~~~~~ 2021-07-29T13:56:30,223 Interface/PotentialInterface.cpp:356:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,223 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,224 | ^~~~~~ 2021-07-29T13:56:30,224 Interface/PotentialInterface.cpp:356:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,224 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,224 | ^~~~~~~~~~ 2021-07-29T13:56:30,224 Interface/PotentialInterface.cpp:356:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,224 356 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,224 | ^~~~~~~~~ 2021-07-29T13:56:30,227 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,227 Interface/PotentialInterface.cpp:394:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,227 394 | static char *kwlist[] = {"numElements", 2021-07-29T13:56:30,227 | ^~~~~~~~~~~~~ 2021-07-29T13:56:30,228 Interface/PotentialInterface.cpp:395:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,228 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,228 | ^~~~ 2021-07-29T13:56:30,228 Interface/PotentialInterface.cpp:395:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,228 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,228 | ^~~~ 2021-07-29T13:56:30,228 Interface/PotentialInterface.cpp:395:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,229 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,229 | ^~~ 2021-07-29T13:56:30,229 Interface/PotentialInterface.cpp:395:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,229 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,229 | ^~~~ 2021-07-29T13:56:30,229 Interface/PotentialInterface.cpp:395:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,229 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,229 | ^~~~ 2021-07-29T13:56:30,230 Interface/PotentialInterface.cpp:395:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,230 395 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T13:56:30,230 | ^~~~ 2021-07-29T13:56:30,230 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,230 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,230 | ^~~~ 2021-07-29T13:56:30,230 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,230 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,230 | ^~~~ 2021-07-29T13:56:30,231 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,231 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,231 | ^~~~ 2021-07-29T13:56:30,231 Interface/PotentialInterface.cpp:396:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,231 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,231 | ^~~~ 2021-07-29T13:56:30,231 Interface/PotentialInterface.cpp:396:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,231 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,232 | ^~~~ 2021-07-29T13:56:30,232 Interface/PotentialInterface.cpp:396:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,232 396 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T13:56:30,232 | ^~~~ 2021-07-29T13:56:30,232 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,232 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T13:56:30,232 | ^~~~~~~~~~ 2021-07-29T13:56:30,232 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,232 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T13:56:30,233 | ^~~~~~~~ 2021-07-29T13:56:30,233 Interface/PotentialInterface.cpp:397:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,233 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T13:56:30,233 | ^~~~~~ 2021-07-29T13:56:30,233 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,233 397 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T13:56:30,233 | ^~~~~~~~~ 2021-07-29T13:56:30,234 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,234 Interface/PotentialInterface.cpp:500:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,234 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,234 | ^~~ 2021-07-29T13:56:30,234 Interface/PotentialInterface.cpp:500:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,234 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,234 | ^~~ 2021-07-29T13:56:30,234 Interface/PotentialInterface.cpp:500:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,235 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,235 | ^~~ 2021-07-29T13:56:30,235 Interface/PotentialInterface.cpp:500:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,235 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,235 | ^~~~ 2021-07-29T13:56:30,235 Interface/PotentialInterface.cpp:500:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,235 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,235 | ^~~~ 2021-07-29T13:56:30,236 Interface/PotentialInterface.cpp:500:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,236 500 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,236 | ^~~~~~~~~ 2021-07-29T13:56:30,236 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,236 501 | "q", "kappa", 2021-07-29T13:56:30,236 | ^~~ 2021-07-29T13:56:30,236 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,236 501 | "q", "kappa", 2021-07-29T13:56:30,237 | ^~~~~~~ 2021-07-29T13:56:30,237 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,237 502 | "D", "alpha", "R0", 2021-07-29T13:56:30,237 | ^~~ 2021-07-29T13:56:30,237 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,237 502 | "D", "alpha", "R0", 2021-07-29T13:56:30,237 | ^~~~~~~ 2021-07-29T13:56:30,237 Interface/PotentialInterface.cpp:502:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,237 502 | "D", "alpha", "R0", 2021-07-29T13:56:30,238 | ^~~~ 2021-07-29T13:56:30,238 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,238 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,238 | ^~~ 2021-07-29T13:56:30,238 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,238 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,238 | ^~~ 2021-07-29T13:56:30,238 Interface/PotentialInterface.cpp:503:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,239 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,239 | ^~~~ 2021-07-29T13:56:30,239 Interface/PotentialInterface.cpp:503:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,239 503 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,239 | ^~~~~~~~~~~ 2021-07-29T13:56:30,239 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,239 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,239 | ^~~~~~ 2021-07-29T13:56:30,240 Interface/PotentialInterface.cpp:504:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,240 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,240 | ^~~~~~~ 2021-07-29T13:56:30,240 Interface/PotentialInterface.cpp:504:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,240 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,240 | ^~~~~~~~~~~~~~~ 2021-07-29T13:56:30,240 Interface/PotentialInterface.cpp:504:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,240 504 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,240 | ^~~~~~~~~ 2021-07-29T13:56:30,241 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,241 Interface/PotentialInterface.cpp:565:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,241 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,241 | ^~~ 2021-07-29T13:56:30,241 Interface/PotentialInterface.cpp:565:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,241 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,241 | ^~~ 2021-07-29T13:56:30,242 Interface/PotentialInterface.cpp:565:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,242 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,242 | ^~~ 2021-07-29T13:56:30,242 Interface/PotentialInterface.cpp:565:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,242 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,242 | ^~~~ 2021-07-29T13:56:30,242 Interface/PotentialInterface.cpp:565:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,243 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,243 | ^~~~ 2021-07-29T13:56:30,243 Interface/PotentialInterface.cpp:565:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,243 565 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T13:56:30,243 | ^~~~~~~~~ 2021-07-29T13:56:30,243 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,243 566 | "q", "kappa", 2021-07-29T13:56:30,243 | ^~~ 2021-07-29T13:56:30,244 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,244 566 | "q", "kappa", 2021-07-29T13:56:30,244 | ^~~~~~~ 2021-07-29T13:56:30,244 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,244 567 | "D", "alpha", "R0", 2021-07-29T13:56:30,244 | ^~~ 2021-07-29T13:56:30,244 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,244 567 | "D", "alpha", "R0", 2021-07-29T13:56:30,245 | ^~~~~~~ 2021-07-29T13:56:30,245 Interface/PotentialInterface.cpp:567:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,245 567 | "D", "alpha", "R0", 2021-07-29T13:56:30,245 | ^~~~ 2021-07-29T13:56:30,245 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,245 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,245 | ^~~ 2021-07-29T13:56:30,246 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,246 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,246 | ^~~ 2021-07-29T13:56:30,246 Interface/PotentialInterface.cpp:568:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,246 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,246 | ^~~~ 2021-07-29T13:56:30,246 Interface/PotentialInterface.cpp:568:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,247 568 | "a", "b", "f0", "oxide_cut", 2021-07-29T13:56:30,247 | ^~~~~~~~~~~ 2021-07-29T13:56:30,247 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,247 569 | "E", "rho0", "l0", 2021-07-29T13:56:30,247 | ^~~ 2021-07-29T13:56:30,247 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,247 569 | "E", "rho0", "l0", 2021-07-29T13:56:30,247 | ^~~~~~ 2021-07-29T13:56:30,248 Interface/PotentialInterface.cpp:569:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,248 569 | "E", "rho0", "l0", 2021-07-29T13:56:30,248 | ^~~~ 2021-07-29T13:56:30,248 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,248 570 | "B", "C", 2021-07-29T13:56:30,248 | ^~~ 2021-07-29T13:56:30,248 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,249 570 | "B", "C", 2021-07-29T13:56:30,249 | ^~~ 2021-07-29T13:56:30,249 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,249 571 | "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,249 | ^~~~~~~~~~~~~~~ 2021-07-29T13:56:30,249 Interface/PotentialInterface.cpp:571:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,249 571 | "interface_cut", "verbose", NULL}; 2021-07-29T13:56:30,249 | ^~~~~~~~~ 2021-07-29T13:56:30,250 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,250 Interface/PotentialInterface.cpp:647:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,250 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T13:56:30,250 | ^~~~~~~~~~ 2021-07-29T13:56:30,250 Interface/PotentialInterface.cpp:647:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,250 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T13:56:30,250 | ^~~~~~~~~ 2021-07-29T13:56:30,251 Interface/PotentialInterface.cpp:647:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,251 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T13:56:30,251 | ^~~~~~~ 2021-07-29T13:56:30,251 Interface/PotentialInterface.cpp:647:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,251 647 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T13:56:30,251 | ^~~~~~ 2021-07-29T13:56:30,251 Interface/PotentialInterface.cpp:648:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,252 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,252 | ^~~~~~ 2021-07-29T13:56:30,252 Interface/PotentialInterface.cpp:648:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,252 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,252 | ^~~~~~~~~~ 2021-07-29T13:56:30,252 Interface/PotentialInterface.cpp:648:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,252 648 | "rCut", "modified", "verbose", NULL}; 2021-07-29T13:56:30,252 | ^~~~~~~~~ 2021-07-29T13:56:30,253 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,253 Interface/PotentialInterface.cpp:710:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,253 710 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T13:56:30,253 | ^~~~~~~ 2021-07-29T13:56:30,253 Interface/PotentialInterface.cpp:710:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,253 710 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T13:56:30,253 | ^~~~~~~~~~~~~~~~~~ 2021-07-29T13:56:30,259 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-29T13:56:30,260 Interface/PotentialInterface.cpp:862:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:56:30,260 862 | for (int i = 0; i < s1.size(); i++) 2021-07-29T13:56:30,260 | ~~^~~~~~~~~~~ 2021-07-29T13:56:30,266 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialCheckUpdateNbList(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:30,266 Interface/PotentialInterface.cpp:954:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:30,266 954 | static char* argnames[] = {"atoms", NULL}; 2021-07-29T13:56:30,266 | ^~~~~~~ 2021-07-29T13:56:32,961 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-29T13:56:34,467 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:34,468 from Interface/PythonConversions.h:30, 2021-07-29T13:56:34,468 from Interface/PythonConversions.cpp:24: 2021-07-29T13:56:34,468 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:34,468 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:34,468 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:34,468 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:34,469 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:34,469 | ^~ 2021-07-29T13:56:34,478 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:34,478 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:34,478 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:34,478 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:34,479 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:34,479 | ^~ 2021-07-29T13:56:34,487 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:34,487 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:34,487 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:34,487 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:34,487 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:34,488 | ^~ 2021-07-29T13:56:34,497 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:34,498 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:34,498 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:34,498 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:34,498 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:34,498 | ^~ 2021-07-29T13:56:34,508 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:34,508 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:34,508 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:34,509 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:34,509 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:34,509 | ^~ 2021-07-29T13:56:35,380 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-29T13:56:36,994 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:36,994 from Interface/RDFInterface.h:30, 2021-07-29T13:56:36,994 from Interface/RDFInterface.cpp:27: 2021-07-29T13:56:36,994 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:36,994 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:36,995 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:36,995 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:36,995 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:36,995 | ^~ 2021-07-29T13:56:37,004 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:37,004 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:37,005 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:37,005 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:37,005 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:37,005 | ^~ 2021-07-29T13:56:37,012 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:37,013 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:37,013 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:37,013 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:37,013 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:37,013 | ^~ 2021-07-29T13:56:37,023 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:37,024 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:37,024 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:37,024 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:37,024 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:37,024 | ^~ 2021-07-29T13:56:37,034 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:37,034 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:37,034 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:37,034 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:37,034 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:37,035 | ^~ 2021-07-29T13:56:38,959 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-29T13:56:40,485 In file included from Basics/AsapPython.h:44, 2021-07-29T13:56:40,485 from Interface/ToolsInterface.cpp:27: 2021-07-29T13:56:40,485 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:56:40,485 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:40,486 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:56:40,486 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:40,486 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:40,486 | ^~ 2021-07-29T13:56:40,495 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:56:40,495 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:40,496 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:56:40,496 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:40,496 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:40,496 | ^~ 2021-07-29T13:56:40,504 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:56:40,504 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:40,504 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:56:40,504 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:40,504 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:40,505 | ^~ 2021-07-29T13:56:40,514 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:56:40,515 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:40,515 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:56:40,515 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:40,515 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:40,515 | ^~ 2021-07-29T13:56:40,525 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:56:40,525 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:56:40,525 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:56:40,525 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:56:40,526 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:56:40,526 | ^~ 2021-07-29T13:56:40,723 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-29T13:56:40,723 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:40,723 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T13:56:40,724 | ^~~~~~~ 2021-07-29T13:56:40,724 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:56:40,724 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T13:56:40,724 | ^~~~~~~~ 2021-07-29T13:56:41,463 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-29T13:56:43,112 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-29T13:56:44,985 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-29T13:56:47,032 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-29T13:56:48,622 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-29T13:56:50,301 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-29T13:56:52,398 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-29T13:56:54,134 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-29T13:56:55,565 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-29T13:56:55,921 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-29T13:56:56,833 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-29T13:56:57,390 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-29T13:57:00,841 In file included from /usr/include/c++/10/vector:72, 2021-07-29T13:57:00,841 from PTM/voronoi/cell.hpp:15, 2021-07-29T13:57:00,842 from PTM/voronoi/cell.cpp:16: 2021-07-29T13:57:00,842 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T13:57:00,842 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T13:57:00,842 426 | vector<_Tp, _Alloc>:: 2021-07-29T13:57:00,842 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:00,903 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-29T13:57:00,903 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:57:00,903 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T13:57:00,904 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:01,168 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/AsapMPI.cpp -o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o 2021-07-29T13:57:03,089 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:03,089 from Parallel/AsapMPI.cpp:27: 2021-07-29T13:57:03,089 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-29T13:57:03,089 Parallel/AsapMPI.cpp:313:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:03,089 313 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-29T13:57:03,090 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:03,090 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:03,090 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:03,090 | ^~ 2021-07-29T13:57:03,090 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-29T13:57:03,090 Parallel/AsapMPI.cpp:329:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:03,091 329 | ASSERT(sendbuf.size() == size); 2021-07-29T13:57:03,091 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:57:03,091 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:03,091 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:03,091 | ^~ 2021-07-29T13:57:04,257 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelAtoms.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o 2021-07-29T13:57:06,193 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:06,193 from Parallel/ParallelAtoms.h:28, 2021-07-29T13:57:06,193 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T13:57:06,193 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-29T13:57:06,193 Parallel/ParallelAtoms.cpp:266:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:06,193 266 | (sendlist->size() < nProcessors)); 2021-07-29T13:57:06,194 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-29T13:57:06,194 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:06,194 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:06,194 | ^~ 2021-07-29T13:57:06,229 Parallel/ParallelAtoms.cpp:343:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,229 343 | for (int j = 0; j < arrays.size(); j++) 2021-07-29T13:57:06,229 | ~~^~~~~~~~~~~~~~~ 2021-07-29T13:57:06,230 Parallel/ParallelAtoms.cpp:363:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,230 363 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-29T13:57:06,230 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,231 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:06,231 from Parallel/ParallelAtoms.h:28, 2021-07-29T13:57:06,231 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T13:57:06,231 Parallel/ParallelAtoms.cpp:370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,231 370 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-29T13:57:06,231 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,231 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:06,232 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:06,232 | ^~ 2021-07-29T13:57:06,277 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-29T13:57:06,277 Parallel/ParallelAtoms.cpp:634:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,277 634 | for (int i = 0; i < array_names.size(); i++) 2021-07-29T13:57:06,278 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,279 Parallel/ParallelAtoms.cpp:655:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,279 655 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T13:57:06,280 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,280 Parallel/ParallelAtoms.cpp:662:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,280 662 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T13:57:06,280 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,287 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:06,287 from Parallel/ParallelAtoms.h:28, 2021-07-29T13:57:06,287 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T13:57:06,288 Parallel/ParallelAtoms.cpp:674:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,288 674 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-29T13:57:06,288 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,288 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:06,288 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:06,288 | ^~ 2021-07-29T13:57:06,288 Parallel/ParallelAtoms.cpp:684:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,289 684 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T13:57:06,289 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,294 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-29T13:57:06,295 Parallel/ParallelAtoms.cpp:748:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,295 748 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T13:57:06,295 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,331 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:06,332 from Parallel/ParallelAtoms.h:28, 2021-07-29T13:57:06,332 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T13:57:06,332 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T13:57:06,332 Parallel/ParallelAtoms.cpp:1139:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:06,332 1139 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T13:57:06,333 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,333 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:06,333 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:06,333 | ^~ 2021-07-29T13:57:06,333 Parallel/ParallelAtoms.cpp:1145:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,333 1145 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T13:57:06,333 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,344 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:06,344 from Parallel/ParallelAtoms.h:28, 2021-07-29T13:57:06,345 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T13:57:06,345 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T13:57:06,345 Parallel/ParallelAtoms.cpp:1172:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:06,345 1172 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T13:57:06,345 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:06,345 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:06,346 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:06,346 | ^~ 2021-07-29T13:57:06,346 Parallel/ParallelAtoms.cpp:1178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:06,346 1178 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T13:57:06,346 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:11,815 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelPotential.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o 2021-07-29T13:57:15,421 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/RegularGridDecomposition.cpp -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o 2021-07-29T13:57:20,171 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/AsapParallel.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o 2021-07-29T13:57:22,424 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelAtomsInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o 2021-07-29T13:57:24,009 ParallelInterface/ParallelAtomsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DistributeAtoms(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:24,009 ParallelInterface/ParallelAtomsInterface.cpp:39:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:24,009 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T13:57:24,010 | ^~~~~~~ 2021-07-29T13:57:24,010 ParallelInterface/ParallelAtomsInterface.cpp:39:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:24,010 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T13:57:24,010 | ^~~~~~~~~ 2021-07-29T13:57:24,372 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelNeighborListInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o 2021-07-29T13:57:25,889 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:25,889 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-29T13:57:25,889 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T13:57:25,889 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:57:25,889 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T13:57:25,890 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:25,890 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:25,890 | ^~ 2021-07-29T13:57:25,899 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T13:57:25,899 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:57:25,899 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T13:57:25,900 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:25,900 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:25,900 | ^~ 2021-07-29T13:57:25,908 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T13:57:25,908 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:57:25,908 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T13:57:25,908 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:25,909 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:25,909 | ^~ 2021-07-29T13:57:25,919 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T13:57:25,919 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:57:25,919 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T13:57:25,919 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:25,919 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:25,919 | ^~ 2021-07-29T13:57:25,929 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T13:57:25,929 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:57:25,929 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T13:57:25,929 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:25,930 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:25,930 | ^~ 2021-07-29T13:57:26,121 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:26,121 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:26,121 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:57:26,121 | ^~~~~~ 2021-07-29T13:57:26,121 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:26,121 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:57:26,122 | ^~~~~~~ 2021-07-29T13:57:26,122 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:26,122 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T13:57:26,122 | ^~~~~~~~~~~~~ 2021-07-29T13:57:26,275 In file included from ParallelInterface/ParallelNeighborListInterface.cpp:7: 2021-07-29T13:57:26,275 Interface/Templates.h: At global scope: 2021-07-29T13:57:26,275 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:57:26,275 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:57:26,275 | ^~~~~~~~~~~~~~ 2021-07-29T13:57:26,517 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelPotentialInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o 2021-07-29T13:57:27,974 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:27,974 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:27,974 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T13:57:27,975 | ^~~~~~~~~~~ 2021-07-29T13:57:27,975 ParallelInterface/ParallelPotentialInterface.cpp:48:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:27,975 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T13:57:27,975 | ^~~~~~~~~ 2021-07-29T13:57:28,394 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/mpimodule.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o 2021-07-29T13:57:30,200 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_receive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:30,201 ParallelInterface/mpimodule.cpp:193:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,201 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T13:57:30,201 | ^~~ 2021-07-29T13:57:30,201 ParallelInterface/mpimodule.cpp:193:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,201 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T13:57:30,201 | ^~~~~ 2021-07-29T13:57:30,202 ParallelInterface/mpimodule.cpp:193:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,202 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T13:57:30,202 | ^~~~~ 2021-07-29T13:57:30,202 ParallelInterface/mpimodule.cpp:193:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,202 193 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T13:57:30,202 | ^~~~~~~ 2021-07-29T13:57:30,205 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_probe(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:30,205 ParallelInterface/mpimodule.cpp:241:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,206 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T13:57:30,206 | ^~~~~ 2021-07-29T13:57:30,206 ParallelInterface/mpimodule.cpp:241:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,206 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T13:57:30,206 | ^~~~~ 2021-07-29T13:57:30,207 ParallelInterface/mpimodule.cpp:241:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,207 241 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T13:57:30,207 | ^~~~~~~ 2021-07-29T13:57:30,209 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_send(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:30,209 ParallelInterface/mpimodule.cpp:289:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,209 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T13:57:30,209 | ^~~ 2021-07-29T13:57:30,209 ParallelInterface/mpimodule.cpp:289:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,209 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T13:57:30,210 | ^~~~~~ 2021-07-29T13:57:30,210 ParallelInterface/mpimodule.cpp:289:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,210 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T13:57:30,210 | ^~~~~ 2021-07-29T13:57:30,210 ParallelInterface/mpimodule.cpp:289:48: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,210 289 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T13:57:30,211 | ^~~~~~~ 2021-07-29T13:57:30,213 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_sendreceive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T13:57:30,213 ParallelInterface/mpimodule.cpp:331:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,213 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,214 | ^~~ 2021-07-29T13:57:30,214 ParallelInterface/mpimodule.cpp:331:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,214 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,214 | ^~~~~~ 2021-07-29T13:57:30,214 ParallelInterface/mpimodule.cpp:331:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,214 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,215 | ^~~ 2021-07-29T13:57:30,215 ParallelInterface/mpimodule.cpp:331:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,215 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,215 | ^~~~~ 2021-07-29T13:57:30,215 ParallelInterface/mpimodule.cpp:331:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,216 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,216 | ^~~~~~~~~ 2021-07-29T13:57:30,216 ParallelInterface/mpimodule.cpp:331:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,216 331 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T13:57:30,216 | ^~~~~~~~~ 2021-07-29T13:57:30,227 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_reduce(AsapNS::MPIObject*, PyObject*, PyObject*, MPI_Op, int)’: 2021-07-29T13:57:30,227 ParallelInterface/mpimodule.cpp:567:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,227 567 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T13:57:30,227 | ^~~ 2021-07-29T13:57:30,228 ParallelInterface/mpimodule.cpp:567:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T13:57:30,228 567 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T13:57:30,228 | ^~~~~~ 2021-07-29T13:57:31,493 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-29T13:57:33,645 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-29T13:57:33,645 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,645 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-29T13:57:33,645 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:33,659 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-29T13:57:33,659 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,660 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T13:57:33,660 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-29T13:57:33,660 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,660 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T13:57:33,660 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-29T13:57:33,660 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,660 251 | if (force.capacity() < nSize) 2021-07-29T13:57:33,661 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:57:33,661 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,661 262 | if (Eas.capacity() < nAtoms) 2021-07-29T13:57:33,661 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:33,662 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-29T13:57:33,662 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,663 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-29T13:57:33,663 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T13:57:33,666 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:33,666 from Potentials/EMT.h:34, 2021-07-29T13:57:33,666 from Potentials/EMT.cpp:34: 2021-07-29T13:57:33,666 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-29T13:57:33,666 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,666 324 | ASSERT(nelements == elements_set.size()); 2021-07-29T13:57:33,666 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:33,667 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,667 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,667 | ^~ 2021-07-29T13:57:33,683 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-29T13:57:33,683 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,684 538 | ASSERT(Epot.size() == nAtoms); 2021-07-29T13:57:33,684 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:57:33,684 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,684 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,684 | ^~ 2021-07-29T13:57:33,719 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T13:57:33,720 Potentials/EMT.cpp:1271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,720 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T13:57:33,720 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:57:33,720 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,720 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,720 | ^~ 2021-07-29T13:57:33,720 Potentials/EMT.cpp:1271:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,721 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T13:57:33,721 | ~~~~~~~^~~~~~~~~~~~ 2021-07-29T13:57:33,721 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,721 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,721 | ^~ 2021-07-29T13:57:33,721 Potentials/EMT.cpp:1272:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:33,721 1272 | nSize == dEds.size()); 2021-07-29T13:57:33,722 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-29T13:57:33,722 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,722 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,722 | ^~ 2021-07-29T13:57:33,732 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-29T13:57:33,732 Potentials/EMT.cpp:1437:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,732 1437 | ASSERT(virials.size() == nSize); 2021-07-29T13:57:33,733 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:33,733 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,733 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,733 | ^~ 2021-07-29T13:57:33,741 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-29T13:57:33,742 Potentials/EMT.cpp:1556:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,742 1556 | ASSERT(this->force.size() >= nSize); 2021-07-29T13:57:33,742 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:33,742 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,742 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,742 | ^~ 2021-07-29T13:57:33,743 Potentials/EMT.cpp:1559:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:33,743 1559 | ASSERT(virials.size() == nSize); 2021-07-29T13:57:33,743 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:33,743 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:33,743 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:33,743 | ^~ 2021-07-29T13:57:34,302 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:57:34,302 from Potentials/EMT.cpp:39: 2021-07-29T13:57:34,303 Interface/Templates.h: At global scope: 2021-07-29T13:57:34,303 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:57:34,303 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:57:34,303 | ^~~~~~~~~~~~~~ 2021-07-29T13:57:40,390 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-29T13:57:42,316 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:42,316 from Potentials/EMT.h:34, 2021-07-29T13:57:42,316 from Potentials/EMT2013.h:13, 2021-07-29T13:57:42,316 from Potentials/EMT2013.cpp:8: 2021-07-29T13:57:42,316 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-29T13:57:42,316 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:42,316 105 | ASSERT(nelements == elements_set.size()); 2021-07-29T13:57:42,317 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:42,317 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:42,317 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:42,317 | ^~ 2021-07-29T13:57:42,353 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T13:57:42,353 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:42,354 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T13:57:42,354 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:42,354 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:42,354 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:42,354 | ^~ 2021-07-29T13:57:42,354 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:42,355 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T13:57:42,355 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:42,355 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:42,355 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:42,355 | ^~ 2021-07-29T13:57:42,355 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:42,355 569 | nSize == this->dEds.size()); 2021-07-29T13:57:42,356 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:57:42,356 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:42,356 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:42,356 | ^~ 2021-07-29T13:57:42,727 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:57:42,727 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:57:42,727 from Potentials/EMT2013.cpp:13: 2021-07-29T13:57:42,727 Interface/Templates.h: At global scope: 2021-07-29T13:57:42,727 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:57:42,728 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:57:42,728 | ^~~~~~~~~~~~~~ 2021-07-29T13:57:45,033 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-29T13:57:47,514 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-29T13:57:49,778 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-29T13:57:51,753 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-29T13:57:53,643 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-29T13:57:53,643 Potentials/LennardJones.cpp:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:57:53,644 389 | if (nAtoms != virials.size()) 2021-07-29T13:57:53,644 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:57:53,650 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:53,651 from Potentials/LennardJones.cpp:43: 2021-07-29T13:57:53,651 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-29T13:57:53,651 Potentials/LennardJones.cpp:499:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:53,651 499 | ASSERT(forces.size() == nSize); 2021-07-29T13:57:53,651 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:53,651 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:53,651 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:53,651 | ^~ 2021-07-29T13:57:53,656 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-29T13:57:53,656 Potentials/LennardJones.cpp:595:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:53,656 595 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T13:57:53,656 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:57:53,657 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:53,657 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:53,657 | ^~ 2021-07-29T13:57:53,945 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:57:53,945 from Basics/NeighborList.h:37, 2021-07-29T13:57:53,945 from Potentials/LennardJones.cpp:46: 2021-07-29T13:57:53,945 Interface/Templates.h: At global scope: 2021-07-29T13:57:53,946 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:57:53,946 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:57:53,946 | ^~~~~~~~~~~~~~ 2021-07-29T13:57:56,308 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-29T13:57:58,146 Potentials/MetalOxideInterface.cpp: In member function ‘bool AsapNS::MetalOxideInterface::CheckNeighborLists()’: 2021-07-29T13:57:58,146 Potentials/MetalOxideInterface.cpp:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-29T13:57:58,147 220 | if (counters.nblist == atoms->GetPositionsCounter() && neighborList != NULL && !neighborList->IsInvalid()) 2021-07-29T13:57:58,147 | ^~ 2021-07-29T13:57:58,147 Potentials/MetalOxideInterface.cpp:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-29T13:57:58,147 223 | bool update = false; 2021-07-29T13:57:58,147 | ^~~~ 2021-07-29T13:57:58,153 In file included from Basics/AsapPython.h:44, 2021-07-29T13:57:58,153 from Potentials/MetalOxideInterface.cpp:29: 2021-07-29T13:57:58,153 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-29T13:57:58,153 Potentials/MetalOxideInterface.cpp:328:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:58,154 328 | ASSERT(forces.size() == nSize); 2021-07-29T13:57:58,154 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:57:58,154 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:58,154 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:58,154 | ^~ 2021-07-29T13:57:58,170 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-29T13:57:58,170 Potentials/MetalOxideInterface.cpp:583:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:57:58,170 583 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T13:57:58,171 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:57:58,171 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:57:58,171 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:57:58,171 | ^~ 2021-07-29T13:57:58,511 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:57:58,511 from Basics/NeighborList.h:37, 2021-07-29T13:57:58,511 from Potentials/MetalOxideInterface.cpp:32: 2021-07-29T13:57:58,511 Interface/Templates.h: At global scope: 2021-07-29T13:57:58,511 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:57:58,512 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:57:58,512 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:01,776 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-29T13:58:03,655 Potentials/MetalOxideInterface2.cpp: In member function ‘bool AsapNS::MetalOxideInterface2::CheckNeighborLists()’: 2021-07-29T13:58:03,655 Potentials/MetalOxideInterface2.cpp:235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-29T13:58:03,655 235 | if (counters.nblist == atoms->GetPositionsCounter() && neighborList != NULL && !neighborList->IsInvalid()) 2021-07-29T13:58:03,655 | ^~ 2021-07-29T13:58:03,655 Potentials/MetalOxideInterface2.cpp:238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-29T13:58:03,655 238 | bool update = false; 2021-07-29T13:58:03,656 | ^~~~ 2021-07-29T13:58:03,662 In file included from Basics/AsapPython.h:44, 2021-07-29T13:58:03,662 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-29T13:58:03,662 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-29T13:58:03,662 Potentials/MetalOxideInterface2.cpp:343:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:03,663 343 | ASSERT(forces.size() == nSize); 2021-07-29T13:58:03,663 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:58:03,663 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:03,663 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:03,663 | ^~ 2021-07-29T13:58:03,678 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-29T13:58:03,678 Potentials/MetalOxideInterface2.cpp:565:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:03,678 565 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T13:58:03,678 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:58:03,678 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:03,678 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:03,679 | ^~ 2021-07-29T13:58:04,042 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:04,042 from Basics/NeighborList.h:37, 2021-07-29T13:58:04,043 from Potentials/MetalOxideInterface2.cpp:46: 2021-07-29T13:58:04,043 Interface/Templates.h: At global scope: 2021-07-29T13:58:04,043 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:04,043 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:04,043 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:07,460 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-29T13:58:09,616 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:09,616 from Basics/NeighborList.h:37, 2021-07-29T13:58:09,616 from Potentials/MonteCarloEMT.cpp:25: 2021-07-29T13:58:09,617 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:09,617 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:09,617 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:11,296 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-29T13:58:13,177 In file included from Basics/AsapPython.h:44, 2021-07-29T13:58:13,177 from Potentials/Morse.cpp:43: 2021-07-29T13:58:13,177 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-29T13:58:13,177 Potentials/Morse.cpp:484:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:13,178 484 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T13:58:13,178 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:58:13,178 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:13,178 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:13,178 | ^~ 2021-07-29T13:58:13,464 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:13,464 from Basics/NeighborList.h:37, 2021-07-29T13:58:13,464 from Potentials/Morse.cpp:46: 2021-07-29T13:58:13,464 Interface/Templates.h: At global scope: 2021-07-29T13:58:13,464 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:13,465 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:13,465 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:15,173 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T13:58:15,174 from Potentials/Morse.cpp:54: 2021-07-29T13:58:15,174 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T13:58:15,174 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,174 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-29T13:58:15,174 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,174 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,175 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,175 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,197 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-29T13:58:15,198 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,198 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-29T13:58:15,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,214 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T13:58:15,214 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,215 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-29T13:58:15,215 | ^~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,215 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,244 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-29T13:58:15,245 from /usr/include/c++/10/algorithm:62, 2021-07-29T13:58:15,245 from Potentials/Morse.cpp:54: 2021-07-29T13:58:15,245 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T13:58:15,245 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,245 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-29T13:58:15,245 | ^~~~~~~~~~~~~ 2021-07-29T13:58:15,286 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T13:58:15,286 from Potentials/Morse.cpp:54: 2021-07-29T13:58:15,286 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T13:58:15,287 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,287 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-29T13:58:15,287 | ^~~~~~~~~~~~~ 2021-07-29T13:58:15,287 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,287 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,287 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,320 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T13:58:15,321 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,321 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-29T13:58:15,321 | ^~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,321 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,321 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,322 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,322 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-29T13:58:15,322 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,322 1925 | __comp); 2021-07-29T13:58:15,322 | ~~~~~~~ 2021-07-29T13:58:15,322 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,322 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,322 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-29T13:58:15,323 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,323 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,323 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-29T13:58:15,323 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,361 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-29T13:58:15,362 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,362 1974 | std::__introsort_loop(__first, __last, 2021-07-29T13:58:15,362 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,362 1975 | std::__lg(__last - __first) * 2, 2021-07-29T13:58:15,362 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,362 1976 | __comp); 2021-07-29T13:58:15,362 | ~~~~~~~ 2021-07-29T13:58:15,363 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,363 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-29T13:58:15,363 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,363 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T13:58:15,363 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-29T13:58:15,363 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:15,748 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-29T13:58:17,306 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-29T13:58:17,306 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:58:17,307 52 | for (int i = 0; i < virials.size(); i++) 2021-07-29T13:58:17,307 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T13:58:17,732 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-29T13:58:19,593 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-29T13:58:19,594 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:58:19,594 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T13:58:19,594 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T13:58:19,594 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T13:58:19,594 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T13:58:19,595 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-29T13:58:19,924 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:19,924 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:58:19,924 from Potentials/RGL.cpp:5: 2021-07-29T13:58:19,925 Interface/Templates.h: At global scope: 2021-07-29T13:58:19,925 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:19,925 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:19,925 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:22,321 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-29T13:58:24,201 In file included from Basics/AsapPython.h:44, 2021-07-29T13:58:24,201 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-29T13:58:24,201 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-29T13:58:24,201 Potentials/RahmanStillingerLemberg.cpp:368:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:24,201 368 | ASSERT(forces.size() == nSize); 2021-07-29T13:58:24,202 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T13:58:24,202 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:24,202 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:24,202 | ^~ 2021-07-29T13:58:24,210 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-29T13:58:24,211 Potentials/RahmanStillingerLemberg.cpp:465:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:24,211 465 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T13:58:24,211 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T13:58:24,211 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:24,211 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:24,211 | ^~ 2021-07-29T13:58:24,499 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:24,500 from Basics/NeighborList.h:37, 2021-07-29T13:58:24,500 from Potentials/RahmanStillingerLemberg.cpp:46: 2021-07-29T13:58:24,500 Interface/Templates.h: At global scope: 2021-07-29T13:58:24,500 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:24,500 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:24,500 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:27,074 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-29T13:58:28,836 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-29T13:58:28,836 Tools/CNA.cpp:60:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:58:28,836 60 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-29T13:58:28,836 | ~~~^~~~~~~~ 2021-07-29T13:58:28,840 Tools/CNA.cpp:70:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-29T13:58:28,841 70 | if (a1 < a2) 2021-07-29T13:58:28,841 | ~~~^~~~ 2021-07-29T13:58:28,842 Tools/CNA.cpp:90:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T13:58:28,842 90 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-29T13:58:28,842 | ~~~^~~~ 2021-07-29T13:58:29,073 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:29,073 from Basics/NeighborList.h:37, 2021-07-29T13:58:29,074 from Tools/CNA.cpp:27: 2021-07-29T13:58:29,074 Interface/Templates.h: At global scope: 2021-07-29T13:58:29,074 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:29,074 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:29,074 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:29,919 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-29T13:58:31,626 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:31,626 from Tools/CoordinationNumbers.cpp:27: 2021-07-29T13:58:31,626 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:31,626 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:31,626 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:32,223 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-29T13:58:34,952 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:34,952 from Basics/NeighborList.h:37, 2021-07-29T13:58:34,953 from Tools/FullCNA.cpp:27: 2021-07-29T13:58:34,953 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:34,953 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:34,953 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:36,773 In file included from /usr/include/c++/10/map:60, 2021-07-29T13:58:36,773 from Tools/FullCNA.h:35, 2021-07-29T13:58:36,773 from Tools/FullCNA.cpp:24: 2021-07-29T13:58:36,773 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T13:58:36,773 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T13:58:36,774 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T13:58:36,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,140 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T13:58:37,141 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T13:58:37,141 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T13:58:37,141 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,187 In file included from /usr/include/c++/10/map:61, 2021-07-29T13:58:37,187 from Tools/FullCNA.h:35, 2021-07-29T13:58:37,187 from Tools/FullCNA.cpp:24: 2021-07-29T13:58:37,188 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-29T13:58:37,188 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T13:58:37,188 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T13:58:37,188 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,188 502 | std::tuple(__k), 2021-07-29T13:58:37,188 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,188 503 | std::tuple<>()); 2021-07-29T13:58:37,188 | ~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,189 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T13:58:37,189 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T13:58:37,189 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,190 502 | std::tuple(__k), 2021-07-29T13:58:37,190 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T13:58:37,190 503 | std::tuple<>()); 2021-07-29T13:58:37,190 | ~~~~~~~~~~~~~~~ 2021-07-29T13:58:38,114 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-29T13:58:39,974 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:39,974 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:58:39,975 from Tools/GetNeighborList.cpp:28: 2021-07-29T13:58:39,975 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:39,975 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:39,975 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:40,498 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-29T13:58:42,226 In file included from Basics/AsapPython.h:44, 2021-07-29T13:58:42,226 from Tools/RawRadialDistribution.cpp:29: 2021-07-29T13:58:42,226 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-29T13:58:42,226 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:42,226 55 | ASSERT(result.size() == nGroups); 2021-07-29T13:58:42,226 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T13:58:42,226 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:42,227 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:42,227 | ^~ 2021-07-29T13:58:42,236 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T13:58:42,236 56 | ASSERT(counts.size() == nGroups); 2021-07-29T13:58:42,237 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T13:58:42,237 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T13:58:42,237 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T13:58:42,237 | ^~ 2021-07-29T13:58:42,659 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:42,660 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:58:42,660 from Tools/RawRadialDistribution.cpp:33: 2021-07-29T13:58:42,660 Interface/Templates.h: At global scope: 2021-07-29T13:58:42,660 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:42,660 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:42,660 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:43,817 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-29T13:58:45,688 In file included from Basics/NeighborLocator.h:39, 2021-07-29T13:58:45,689 from Basics/NeighborCellLocator.h:38, 2021-07-29T13:58:45,689 from Tools/SecondaryNeighborLocator.h:43, 2021-07-29T13:58:45,689 from Tools/SecondaryNeighborLocator.cpp:40: 2021-07-29T13:58:45,689 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T13:58:45,689 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T13:58:45,689 | ^~~~~~~~~~~~~~ 2021-07-29T13:58:46,450 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels34_p.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels34_p.o 2021-07-29T13:58:46,694 VersionInfo_autogen/version_piwheels34_p.cpp:15:63: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-29T13:58:46,694 15 | return ("ASAP version 3.12.7 parallel, compiled " __DATE__ " " __TIME__ " on piwheels34 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T13:58:46,694 | ^~~~~~~~ 2021-07-29T13:58:46,695 VersionInfo_autogen/version_piwheels34_p.cpp:15:76: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-29T13:58:46,695 15 | return ("ASAP version 3.12.7 parallel, compiled " __DATE__ " " __TIME__ " on piwheels34 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T13:58:46,695 | ^~~~~~~~ 2021-07-29T13:58:47,317 mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels34_p.o -lm -o build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so 2021-07-29T13:58:49,017 running build_scripts 2021-07-29T13:58:49,017 creating build/scripts-3.9 2021-07-29T13:58:49,019 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-29T13:58:49,022 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-29T13:58:49,024 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-29T13:58:49,024 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-29T13:58:49,033 installing to build/bdist.linux-armv7l/wheel 2021-07-29T13:58:49,033 running install 2021-07-29T13:58:49,035 running install_lib 2021-07-29T13:58:49,039 creating build/bdist.linux-armv7l 2021-07-29T13:58:49,040 creating build/bdist.linux-armv7l/wheel 2021-07-29T13:58:49,042 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,045 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,046 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,049 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,051 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,053 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,056 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,059 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,061 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,064 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T13:58:49,066 creating build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T13:58:49,068 copying build/lib.linux-armv7l-3.9/asap3/visualize/fieldplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T13:58:49,071 copying build/lib.linux-armv7l-3.9/asap3/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T13:58:49,073 copying build/lib.linux-armv7l-3.9/asap3/visualize/colortable.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T13:58:49,077 copying build/lib.linux-armv7l-3.9/asap3/visualize/primiplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T13:58:49,081 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,084 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,086 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,088 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,091 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,093 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,095 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,097 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,100 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,102 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,105 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T13:58:49,108 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,110 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,113 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,116 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,118 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,121 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,122 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,125 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T13:58:49,126 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T13:58:49,128 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,130 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,132 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,135 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,138 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,140 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,142 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,144 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,147 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,150 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,152 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,154 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,156 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T13:58:49,159 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,160 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,163 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,165 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,167 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,170 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,171 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,174 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,176 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,178 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,181 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,184 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,186 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,188 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,190 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T13:58:49,192 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T13:58:49,195 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,198 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,199 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,201 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,204 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,206 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,209 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T13:58:49,211 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,213 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,215 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T13:58:49,216 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T13:58:49,219 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T13:58:49,223 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T13:58:49,224 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T13:58:49,227 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T13:58:49,229 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T13:58:49,231 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T13:58:49,233 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,235 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,237 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,239 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,242 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T13:58:49,244 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,246 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,250 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T13:58:49,251 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T13:58:49,254 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T13:58:49,256 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T13:58:49,258 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T13:58:49,261 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,262 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,266 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T13:58:49,267 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T13:58:49,269 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T13:58:49,272 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T13:58:49,274 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T13:58:49,277 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,280 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,282 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,286 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:58:49,287 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:58:49,291 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:58:49,294 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T13:58:49,296 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,298 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,301 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,303 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,306 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T13:58:49,309 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,313 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,315 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,317 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,320 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,324 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,327 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,330 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,333 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,335 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,337 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,341 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,344 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,346 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T13:58:49,350 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,352 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,355 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,358 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,360 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,363 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,365 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,367 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,370 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,373 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T13:58:49,375 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T13:58:49,377 copying build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-29T13:58:49,598 running install_egg_info 2021-07-29T13:58:49,624 running egg_info 2021-07-29T13:58:49,624 creating asap3.egg-info 2021-07-29T13:58:49,625 writing asap3.egg-info/PKG-INFO 2021-07-29T13:58:49,627 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-29T13:58:49,630 writing top-level names to asap3.egg-info/top_level.txt 2021-07-29T13:58:49,631 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T13:58:49,686 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T13:58:49,688 reading manifest template 'MANIFEST.in' 2021-07-29T13:58:49,790 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T13:58:49,790 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T13:58:49,790 adding license file 'LICENSE' 2021-07-29T13:58:49,791 adding license file 'LICENSE.LESSER' 2021-07-29T13:58:49,814 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T13:58:49,816 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.12.7-py3.9.egg-info 2021-07-29T13:58:49,826 running install_scripts 2021-07-29T13:58:49,919 creating build/bdist.linux-armv7l/wheel/asap3-3.12.7.data 2021-07-29T13:58:49,919 creating build/bdist.linux-armv7l/wheel/asap3-3.12.7.data/scripts 2021-07-29T13:58:49,920 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.12.7.data/scripts 2021-07-29T13:58:49,923 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.12.7.data/scripts 2021-07-29T13:58:49,925 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.7.data/scripts/asap-qsub to 755 2021-07-29T13:58:49,925 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.7.data/scripts/asap-sbatch to 755 2021-07-29T13:58:49,939 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-29T13:58:49,940 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T13:58:49,949 creating build/bdist.linux-armv7l/wheel/asap3-3.12.7.dist-info/WHEEL 2021-07-29T13:58:49,952 creating '/tmp/pip-wheel-991ixflu/asap3-3.12.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T13:58:52,280 adding '_asap.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T13:58:52,377 adding 'asap3/EMT2011Parameters.py' 2021-07-29T13:58:52,379 adding 'asap3/EMT2011_py.py' 2021-07-29T13:58:52,381 adding 'asap3/EMT2013Parameters.py' 2021-07-29T13:58:52,383 adding 'asap3/GuptaParameters.py' 2021-07-29T13:58:52,384 adding 'asap3/__init__.py' 2021-07-29T13:58:52,385 adding 'asap3/constraints.py' 2021-07-29T13:58:52,387 adding 'asap3/fixepydoc.py' 2021-07-29T13:58:52,388 adding 'asap3/memory.py' 2021-07-29T13:58:52,389 adding 'asap3/mpi.py' 2021-07-29T13:58:52,391 adding 'asap3/testtools.py' 2021-07-29T13:58:52,392 adding 'asap3/timing.py' 2021-07-29T13:58:52,393 adding 'asap3/version.py' 2021-07-29T13:58:52,397 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-29T13:58:52,398 adding 'asap3/Internal/Builtins.py' 2021-07-29T13:58:52,399 adding 'asap3/Internal/CheckArray.py' 2021-07-29T13:58:52,401 adding 'asap3/Internal/Collector.py' 2021-07-29T13:58:52,403 adding 'asap3/Internal/EMTParameters.py' 2021-07-29T13:58:52,404 adding 'asap3/Internal/ListOfElements.py' 2021-07-29T13:58:52,406 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-29T13:58:52,408 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-29T13:58:52,412 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-29T13:58:52,414 adding 'asap3/Internal/Subject.py' 2021-07-29T13:58:52,415 adding 'asap3/Internal/Threads.py' 2021-07-29T13:58:52,417 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-29T13:58:52,418 adding 'asap3/Internal/__init__.py' 2021-07-29T13:58:52,419 adding 'asap3/Internal/checkversion.py' 2021-07-29T13:58:52,421 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-29T13:58:52,423 adding 'asap3/MonteCarlo/Base.py' 2021-07-29T13:58:52,425 adding 'asap3/MonteCarlo/Basin.py' 2021-07-29T13:58:52,426 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-29T13:58:52,427 adding 'asap3/MonteCarlo/Start.py' 2021-07-29T13:58:52,428 adding 'asap3/MonteCarlo/__init__.py' 2021-07-29T13:58:52,431 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-29T13:58:52,433 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-29T13:58:52,434 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-29T13:58:52,436 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-29T13:58:52,438 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-29T13:58:52,439 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-29T13:58:52,442 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-29T13:58:52,443 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-29T13:58:52,445 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-29T13:58:52,447 adding 'asap3/Tools/ElasticConstants.py' 2021-07-29T13:58:52,448 adding 'asap3/Tools/MaterialProperties.py' 2021-07-29T13:58:52,450 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-29T13:58:52,451 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-29T13:58:52,453 adding 'asap3/Tools/Timing.py' 2021-07-29T13:58:52,454 adding 'asap3/Tools/__init__.py' 2021-07-29T13:58:52,456 adding 'asap3/Tools/niflheim.py' 2021-07-29T13:58:52,458 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-29T13:58:52,460 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-29T13:58:52,462 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-29T13:58:52,464 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-29T13:58:52,468 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-29T13:58:52,470 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-29T13:58:52,471 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-29T13:58:52,479 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-29T13:58:52,482 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-29T13:58:52,483 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-29T13:58:52,485 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-29T13:58:52,487 adding 'asap3/analysis/__init__.py' 2021-07-29T13:58:52,488 adding 'asap3/analysis/averagepositions.py' 2021-07-29T13:58:52,490 adding 'asap3/analysis/clusterposition.py' 2021-07-29T13:58:52,491 adding 'asap3/analysis/cutcluster.py' 2021-07-29T13:58:52,493 adding 'asap3/analysis/findcluster.py' 2021-07-29T13:58:52,495 adding 'asap3/analysis/localstructure.py' 2021-07-29T13:58:52,496 adding 'asap3/analysis/particle.py' 2021-07-29T13:58:52,499 adding 'asap3/analysis/ptm.py' 2021-07-29T13:58:52,501 adding 'asap3/analysis/rdf.py' 2021-07-29T13:58:52,503 adding 'asap3/io/ReadOldFiles.py' 2021-07-29T13:58:52,504 adding 'asap3/io/__init__.py' 2021-07-29T13:58:52,507 adding 'asap3/io/bundletrajectory.py' 2021-07-29T13:58:52,509 adding 'asap3/io/cpu_setup.py' 2021-07-29T13:58:52,511 adding 'asap3/io/trajectory.py' 2021-07-29T13:58:52,512 adding 'asap3/md/__init__.py' 2021-07-29T13:58:52,514 adding 'asap3/md/langevin.py' 2021-07-29T13:58:52,516 adding 'asap3/md/md.py' 2021-07-29T13:58:52,517 adding 'asap3/md/npt.py' 2021-07-29T13:58:52,518 adding 'asap3/md/nptberendsen.py' 2021-07-29T13:58:52,520 adding 'asap3/md/nvtberendsen.py' 2021-07-29T13:58:52,522 adding 'asap3/md/velocitydistribution.py' 2021-07-29T13:58:52,523 adding 'asap3/md/verlet.py' 2021-07-29T13:58:52,525 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-29T13:58:52,526 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-29T13:58:52,527 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-29T13:58:52,529 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-29T13:58:52,531 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-29T13:58:52,533 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-29T13:58:52,534 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-29T13:58:52,536 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-29T13:58:52,537 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-29T13:58:52,539 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-29T13:58:52,540 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-29T13:58:52,542 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-29T13:58:52,543 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-29T13:58:52,545 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-29T13:58:52,550 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-29T13:58:52,554 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-29T13:58:52,556 adding 'asap3/optimize/__init__.py' 2021-07-29T13:58:52,557 adding 'asap3/optimize/fire.py' 2021-07-29T13:58:52,558 adding 'asap3/optimize/mdmin.py' 2021-07-29T13:58:52,560 adding 'asap3/optimize/optimize.py' 2021-07-29T13:58:52,561 adding 'asap3/setup/VelocityDistribution.py' 2021-07-29T13:58:52,563 adding 'asap3/setup/__init__.py' 2021-07-29T13:58:52,564 adding 'asap3/setup/dislocation.py' 2021-07-29T13:58:52,566 adding 'asap3/setup/displacementfield.py' 2021-07-29T13:58:52,568 adding 'asap3/setup/multidislocation.py' 2021-07-29T13:58:52,570 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-29T13:58:52,571 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-29T13:58:52,572 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-29T13:58:52,574 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-29T13:58:52,576 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-29T13:58:52,577 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-29T13:58:52,579 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-29T13:58:52,581 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-29T13:58:52,582 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-29T13:58:52,584 adding 'asap3/visualize/__init__.py' 2021-07-29T13:58:52,588 adding 'asap3/visualize/colortable.py' 2021-07-29T13:58:52,590 adding 'asap3/visualize/fieldplotter.py' 2021-07-29T13:58:52,595 adding 'asap3/visualize/primiplotter.py' 2021-07-29T13:58:52,598 adding 'asap3-3.12.7.data/scripts/asap-qsub' 2021-07-29T13:58:52,600 adding 'asap3-3.12.7.data/scripts/asap-sbatch' 2021-07-29T13:58:52,607 adding 'asap3-3.12.7.dist-info/LICENSE' 2021-07-29T13:58:52,609 adding 'asap3-3.12.7.dist-info/LICENSE.LESSER' 2021-07-29T13:58:52,610 adding 'asap3-3.12.7.dist-info/METADATA' 2021-07-29T13:58:52,611 adding 'asap3-3.12.7.dist-info/WHEEL' 2021-07-29T13:58:52,612 adding 'asap3-3.12.7.dist-info/top_level.txt' 2021-07-29T13:58:52,614 adding 'asap3-3.12.7.dist-info/RECORD' 2021-07-29T13:58:52,785 removing build/bdist.linux-armv7l/wheel 2021-07-29T13:58:52,983 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-29T13:58:53,047 Created wheel for asap3: filename=asap3-3.12.7-cp39-cp39-linux_armv7l.whl size=4731642 sha256=7a8aab693e3f1cf50f190de687596d381caa601f223679c74bdf0515029f048a 2021-07-29T13:58:53,047 Stored in directory: /tmp/pip-ephem-wheel-cache-9dsa9nmo/wheels/9d/a2/66/d1dec5394ab3911bdfcaa714bc60ed055bafe8e3c6efce7571 2021-07-29T13:58:53,064 Successfully built asap3 2021-07-29T13:58:53,204 Removed build tracker: '/tmp/pip-req-tracker-zfcucm8y'