2021-07-29T15:16:55,852 Created temporary directory: /tmp/pip-ephem-wheel-cache-8a_d9wjj 2021-07-29T15:16:55,856 Created temporary directory: /tmp/pip-req-tracker-ffs4b79g 2021-07-29T15:16:55,856 Initialized build tracking at /tmp/pip-req-tracker-ffs4b79g 2021-07-29T15:16:55,857 Created build tracker: /tmp/pip-req-tracker-ffs4b79g 2021-07-29T15:16:55,857 Entered build tracker: /tmp/pip-req-tracker-ffs4b79g 2021-07-29T15:16:55,857 Created temporary directory: /tmp/pip-wheel-gxfbzv7i 2021-07-29T15:16:55,893 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T15:16:55,893 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T15:16:55,894 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T15:16:55,894 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T15:16:55,894 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T15:16:55,897 WARNING: Location '/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T15:16:55,897 WARNING: Location 't/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T15:16:55,898 WARNING: Location 'm/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T15:16:55,898 WARNING: Location 'p/asap3/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T15:16:55,898 1 location(s) to search for versions of asap3: 2021-07-29T15:16:55,898 * https://pypi.org/simple/asap3/ 2021-07-29T15:16:55,899 Fetching project page and analyzing links: https://pypi.org/simple/asap3/ 2021-07-29T15:16:55,899 Getting page https://pypi.org/simple/asap3/ 2021-07-29T15:16:55,900 Found index url https://pypi.org/simple 2021-07-29T15:16:56,001 Found link https://files.pythonhosted.org/packages/b3/18/a0fd1f238ed751f8882f815a62354e9e6df3077a9afe218d7754a2fd6a5d/asap3-3.9.6.tar.gz#sha256=9c2895508d6ef7806769ff2bd7d783a895b145543cf906d886192ae0ffc2280d (from https://pypi.org/simple/asap3/), version: 3.9.6 2021-07-29T15:16:56,002 Found link https://files.pythonhosted.org/packages/6d/4b/7623da3d3d4086c524a94def4340bf1e1b4aee1c935420fad6123b20d678/asap3-3.10.0.tar.gz#sha256=4ccb0640ce65acecccd4e871353d6cf94521577507c397623a31e47cf6c624eb (from https://pypi.org/simple/asap3/), version: 3.10.0 2021-07-29T15:16:56,002 Found link https://files.pythonhosted.org/packages/a8/18/3552565db206a682f6c934e8f1291a71095f21b6387d3d2c284c071efe11/asap3-3.10.2.tar.gz#sha256=60ec50c9c50d1b3115edde2ab8f2f42370e08f6eb15c14de0350724d78c47df1 (from https://pypi.org/simple/asap3/), version: 3.10.2 2021-07-29T15:16:56,002 Found link https://files.pythonhosted.org/packages/46/93/a36962deb1049cd6c189fc9944213a7456fc78d7158273a4cf494503e4b0/asap3-3.10.3.tar.gz#sha256=9fabec07296c83fc33c41ac2475e57bd3a2ef688a8364bc3000e70b7195c396e (from https://pypi.org/simple/asap3/), version: 3.10.3 2021-07-29T15:16:56,003 Found link https://files.pythonhosted.org/packages/51/a7/753ffcd46d2da6bb3d07bbe7e2bf320b71e19568b43fc9f3f774cf741f33/asap3-3.10.5.tar.gz#sha256=909682a35b7336bb7deaaa75f697ba26affbff27ad17e3b9fca4a1b3717206c7 (from https://pypi.org/simple/asap3/), version: 3.10.5 2021-07-29T15:16:56,003 Found link https://files.pythonhosted.org/packages/21/ee/fcceabc5e6c11a3398a1039f4ca39c627fafe6176cc6540aedb75f4384f6/asap3-3.10.6.tar.gz#sha256=832ab0e94903efe9ee632db20c56ed605386fc2e62bf863ae3bf81092047ae95 (from https://pypi.org/simple/asap3/), version: 3.10.6 2021-07-29T15:16:56,003 Found link https://files.pythonhosted.org/packages/28/af/109859a068fb8f90b0fa9a594486480b8ae7e9f911593441d8ce82a0f9dd/asap3-3.10.7.tar.gz#sha256=20d721f3eeac6982132eda91d9309baaea03f6ddeab418a0744879daf353c773 (from https://pypi.org/simple/asap3/), version: 3.10.7 2021-07-29T15:16:56,003 Found link https://files.pythonhosted.org/packages/2a/66/8dec58eb472f7855d0837b93daa75825a7bc243b773566902d00b043be18/asap3-3.10.8.tar.gz#sha256=a167e89c717cc75c1ff41bb370b9454563c29333e49b7383e668094af547d139 (from https://pypi.org/simple/asap3/), version: 3.10.8 2021-07-29T15:16:56,004 Found link https://files.pythonhosted.org/packages/31/d5/4dea3371c9d83192c450b8905074653276fb33e9f0e20207471cc0025d09/asap3-3.10.10.tar.gz#sha256=58cc70379ff3de727ad2e19882082c40a4780c72ae86e21decd15a8df1e202f0 (from https://pypi.org/simple/asap3/), version: 3.10.10 2021-07-29T15:16:56,004 Found link https://files.pythonhosted.org/packages/54/04/53dd4e0a6041e9e1e734a81540acd259e1d9e59eec4174f3c530a5b0b448/asap3-3.11.3.tar.gz#sha256=1c4ae761a561d586d9c7a806ff3712a5be6dd61c679b458f95cea329fe683830 (from https://pypi.org/simple/asap3/), version: 3.11.3 2021-07-29T15:16:56,004 Found link https://files.pythonhosted.org/packages/40/c0/af6c6283708b8f23424921d0cfb3a9696b34a3351227e259efbb84178c81/asap3-3.11.5.tar.gz#sha256=faa35042a501581b028f5517ba29530776eef1a4cc8283ad39b7d2722507d18a (from https://pypi.org/simple/asap3/), version: 3.11.5 2021-07-29T15:16:56,005 Found link https://files.pythonhosted.org/packages/83/64/107a2d74f612e5634107b298cc6f636da8324cbd4f8dc3fb06dea33c1ca2/asap3-3.11.6.tar.gz#sha256=242c782bf4267bf67001670f19e16d65f41cb5bf8161c4c7334863b516c52ad0 (from https://pypi.org/simple/asap3/), version: 3.11.6 2021-07-29T15:16:56,005 Found link https://files.pythonhosted.org/packages/14/11/96cebd1ff5aec0b416edfc46c77db129ab9309b5a8b06cc87e20fe14d7cd/asap3-3.11.8.tar.gz#sha256=bd4f0057a34f3f1ea382fcb673bd8bb8be200f53b04adfb9c05b7cf504c70c9b (from https://pypi.org/simple/asap3/), version: 3.11.8 2021-07-29T15:16:56,005 Found link https://files.pythonhosted.org/packages/4f/74/7c39573d0050a75d182b86d8d1bffd7cb797bae459bda1115d717917b95d/asap3-3.11.9.tar.gz#sha256=b40874392631eb05dea00ca71365bb6939e6480afae8b706777e958d6e9293ce (from https://pypi.org/simple/asap3/), version: 3.11.9 2021-07-29T15:16:56,005 Found link https://files.pythonhosted.org/packages/5a/f2/4496f1c397cf0bebdf8af6200370df58de329251c38cdf5316e22c2461af/asap3-3.11.10.tar.gz#sha256=da1b9bb8cde76cf9010921dfd765acf8e7488ae60e5e57c62ec390a178c89261 (from https://pypi.org/simple/asap3/), version: 3.11.10 2021-07-29T15:16:56,006 Found link https://files.pythonhosted.org/packages/3a/52/77063f553b0ded38f99f97c06ee7c81cc9bfeda82b571bdcb25957f80b04/asap3-3.12.1.tar.gz#sha256=6852d7b3f668b8f740f1be7a0b8ead6b831cb1c381b02448e3e9a578d9efb182 (from https://pypi.org/simple/asap3/), version: 3.12.1 2021-07-29T15:16:56,006 Found link https://files.pythonhosted.org/packages/dd/fc/d1953b172e106f00e1cc19c0f830746cb2dec3d1cdeb5ad0ce4347f5a4d9/asap3-3.12.2.tar.gz#sha256=b6c03c790ba4c9f0d231659078c26ce8193fa21314bf2fe4adaa7899d5cd9dbe (from https://pypi.org/simple/asap3/), version: 3.12.2 2021-07-29T15:16:56,006 Found link https://files.pythonhosted.org/packages/d6/cb/7252853e126b18e97811f4d9081a5e2c9d348d51dcccd3a18387236f6f9b/asap3-3.12.3.tar.gz#sha256=70eeb0143b3713b51f89351de0a836433a2248af295d621d94b7c9ddf44a0812 (from https://pypi.org/simple/asap3/), version: 3.12.3 2021-07-29T15:16:56,006 Found link https://files.pythonhosted.org/packages/c6/82/42d85a2fc9ff3e2079f07c32f82ca047e6202eb2974a4a227173278f423a/asap3-3.12.7.tar.gz#sha256=d0903650389d3c162e016fe8162c7a920be9fa7e88cdcf41b953163584ae9348 (from https://pypi.org/simple/asap3/), version: 3.12.7 2021-07-29T15:16:56,007 Found link https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 (from https://pypi.org/simple/asap3/), version: 3.12.8 2021-07-29T15:16:56,007 Skipping link: not a file: https://pypi.org/simple/asap3/ 2021-07-29T15:16:56,027 Given no hashes to check 1 links for project 'asap3': discarding no candidates 2021-07-29T15:16:56,045 Collecting asap3==3.12.8 2021-07-29T15:16:56,047 Created temporary directory: /tmp/pip-unpack-223nqlm5 2021-07-29T15:16:56,095 Downloading asap3-3.12.8.tar.gz (851 kB) 2021-07-29T15:16:57,409 Added asap3==3.12.8 from https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 to build tracker '/tmp/pip-req-tracker-ffs4b79g' 2021-07-29T15:16:57,410 Running setup.py (path:/tmp/pip-wheel-gxfbzv7i/asap3_4b5609beaeb14736a7d17a7b6b88b96e/setup.py) egg_info for package asap3 2021-07-29T15:16:57,411 Created temporary directory: /tmp/pip-pip-egg-info-bxysfdpj 2021-07-29T15:16:57,411 Running command python setup.py egg_info 2021-07-29T15:16:58,545 Asap version number: 3.12.8 2021-07-29T15:16:58,545 customize-local.py not found - this is OK. 2021-07-29T15:16:58,546 customize-piwheels48.py not found - this is OK. 2021-07-29T15:16:58,546 Reading customization from customize.py 2021-07-29T15:16:58,546 Setting CC=mpicxx -pthread 2021-07-29T15:16:58,546 Setting CXX=mpicxx -pthread 2021-07-29T15:16:58,546 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T15:16:58,546 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T15:16:58,546 Recording version info into VersionInfo_autogen 2021-07-29T15:16:58,547 CC = mpicxx -pthread 2021-07-29T15:16:58,547 CFLAGS = -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 2021-07-29T15:16:58,547 Identifying source files 2021-07-29T15:16:58,547 Identifying Python submodules 2021-07-29T15:16:58,547 running egg_info 2021-07-29T15:16:58,547 creating /tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info 2021-07-29T15:16:58,548 writing /tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/PKG-INFO 2021-07-29T15:16:58,550 writing dependency_links to /tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/dependency_links.txt 2021-07-29T15:16:58,552 writing top-level names to /tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/top_level.txt 2021-07-29T15:16:58,554 writing manifest file '/tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/SOURCES.txt' 2021-07-29T15:16:58,918 reading manifest file '/tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/SOURCES.txt' 2021-07-29T15:16:58,919 reading manifest template 'MANIFEST.in' 2021-07-29T15:16:58,975 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T15:16:58,975 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T15:16:58,975 adding license file 'LICENSE' 2021-07-29T15:16:58,976 adding license file 'LICENSE.LESSER' 2021-07-29T15:16:58,995 writing manifest file '/tmp/pip-pip-egg-info-bxysfdpj/asap3.egg-info/SOURCES.txt' 2021-07-29T15:16:59,105 Source in /tmp/pip-wheel-gxfbzv7i/asap3_4b5609beaeb14736a7d17a7b6b88b96e has version 3.12.8, which satisfies requirement asap3==3.12.8 from https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 2021-07-29T15:16:59,106 Removed asap3==3.12.8 from https://files.pythonhosted.org/packages/a8/c2/7545c4cee5dcdcbb86a8d423598ae97b83f6cfc87fd3d1bc0bb792dc01dc/asap3-3.12.8.tar.gz#sha256=bc0e94fb3f6ab62b5cc9f0822ae59022e83f450af6f452d159a0e34a22372d11 from build tracker '/tmp/pip-req-tracker-ffs4b79g' 2021-07-29T15:16:59,110 Created temporary directory: /tmp/pip-unpack-kpjy14v6 2021-07-29T15:16:59,111 Building wheels for collected packages: asap3 2021-07-29T15:16:59,116 Created temporary directory: /tmp/pip-wheel-z2f1mcz9 2021-07-29T15:16:59,116 Building wheel for asap3 (setup.py): started 2021-07-29T15:16:59,116 Destination directory: /tmp/pip-wheel-z2f1mcz9 2021-07-29T15:16:59,117 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gxfbzv7i/asap3_4b5609beaeb14736a7d17a7b6b88b96e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gxfbzv7i/asap3_4b5609beaeb14736a7d17a7b6b88b96e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-z2f1mcz9 2021-07-29T15:17:00,031 Asap version number: 3.12.8 2021-07-29T15:17:00,031 customize-local.py not found - this is OK. 2021-07-29T15:17:00,032 customize-piwheels48.py not found - this is OK. 2021-07-29T15:17:00,032 Reading customization from customize.py 2021-07-29T15:17:00,034 Setting CC=mpicxx -pthread 2021-07-29T15:17:00,035 Setting CXX=mpicxx -pthread 2021-07-29T15:17:00,035 Setting LDSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 2021-07-29T15:17:00,035 Setting LDCXXSHARED=mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions 2021-07-29T15:17:00,048 Identifying source files 2021-07-29T15:17:00,052 Identifying Python submodules 2021-07-29T15:17:00,210 running bdist_wheel 2021-07-29T15:17:00,397 running build 2021-07-29T15:17:00,398 running build_py 2021-07-29T15:17:00,534 creating build 2021-07-29T15:17:00,534 creating build/lib.linux-armv7l-3.9 2021-07-29T15:17:00,535 creating build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,536 copying Python/asap3/testtools.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,538 copying Python/asap3/fixepydoc.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,539 copying Python/asap3/version.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,541 copying Python/asap3/EMT2011_py.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,544 copying Python/asap3/mpi.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,545 copying Python/asap3/__init__.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,548 copying Python/asap3/memory.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,549 copying Python/asap3/constraints.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,551 copying Python/asap3/EMT2013Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,554 copying Python/asap3/EMT2011Parameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,555 copying Python/asap3/timing.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,557 copying Python/asap3/GuptaParameters.py -> build/lib.linux-armv7l-3.9/asap3 2021-07-29T15:17:00,560 creating build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,561 copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,564 copying Python/asap3/Internal/Subject.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,566 copying Python/asap3/Internal/ListOfElements.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,568 copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,570 copying Python/asap3/Internal/EMTParameters.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,573 copying Python/asap3/Internal/Collector.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,576 copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,579 copying Python/asap3/Internal/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,580 copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,584 copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,587 copying Python/asap3/Internal/Threads.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,589 copying Python/asap3/Internal/Builtins.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,591 copying Python/asap3/Internal/CheckArray.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,593 copying Python/asap3/Internal/checkversion.py -> build/lib.linux-armv7l-3.9/asap3/Internal 2021-07-29T15:17:00,595 creating build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T15:17:00,596 copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility 2021-07-29T15:17:00,599 creating build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,599 copying Python/asap3/io/cpu_setup.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,601 copying Python/asap3/io/bundletrajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,604 copying Python/asap3/io/__init__.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,606 copying Python/asap3/io/trajectory.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,609 copying Python/asap3/io/ReadOldFiles.py -> build/lib.linux-armv7l-3.9/asap3/io 2021-07-29T15:17:00,611 creating build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T15:17:00,612 copying Python/asap3/optimize/fire.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T15:17:00,614 copying Python/asap3/optimize/mdmin.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T15:17:00,616 copying Python/asap3/optimize/optimize.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T15:17:00,618 copying Python/asap3/optimize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/optimize 2021-07-29T15:17:00,621 creating build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,622 copying Python/asap3/analysis/findcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,624 copying Python/asap3/analysis/rdf.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,627 copying Python/asap3/analysis/cutcluster.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,629 copying Python/asap3/analysis/clusterposition.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,631 copying Python/asap3/analysis/ptm.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,633 copying Python/asap3/analysis/averagepositions.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,636 copying Python/asap3/analysis/__init__.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,638 copying Python/asap3/analysis/localstructure.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,640 copying Python/asap3/analysis/particle.py -> build/lib.linux-armv7l-3.9/asap3/analysis 2021-07-29T15:17:00,643 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,644 copying Python/asap3/MonteCarlo/Start.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,646 copying Python/asap3/MonteCarlo/Basin.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,648 copying Python/asap3/MonteCarlo/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,650 copying Python/asap3/MonteCarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,652 copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo 2021-07-29T15:17:00,654 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T15:17:00,655 copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T15:17:00,658 copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T15:17:00,661 copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves 2021-07-29T15:17:00,663 creating build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T15:17:00,664 copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T15:17:00,666 copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T15:17:00,669 copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data 2021-07-29T15:17:00,671 creating build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,672 copying Python/asap3/setup/dislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,675 copying Python/asap3/setup/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,676 copying Python/asap3/setup/VelocityDistribution.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,678 copying Python/asap3/setup/multidislocation.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,680 copying Python/asap3/setup/displacementfield.py -> build/lib.linux-armv7l-3.9/asap3/setup 2021-07-29T15:17:00,684 creating build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,685 copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,687 copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,689 copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,691 copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,693 copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,695 copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,698 copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,700 copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,702 copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline 2021-07-29T15:17:00,705 creating build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,706 copying Python/asap3/Tools/MaterialProperties.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,709 copying Python/asap3/Tools/Timing.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,711 copying Python/asap3/Tools/ElasticConstants.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,713 copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,716 copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,718 copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,720 copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,722 copying Python/asap3/Tools/niflheim.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,723 copying Python/asap3/Tools/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,725 copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.linux-armv7l-3.9/asap3/Tools 2021-07-29T15:17:00,728 creating build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,729 copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,731 copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,733 copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,736 copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,738 copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,740 copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,744 copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,746 copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,748 copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,751 copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,753 copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization 2021-07-29T15:17:00,757 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,758 copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,761 copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,763 copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,766 copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,768 copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,769 copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,772 copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,774 copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,775 copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc 2021-07-29T15:17:00,778 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:17:00,778 copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:17:00,781 copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:17:00,785 copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:17:00,787 creating build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T15:17:00,788 copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T15:17:00,790 copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T15:17:00,792 copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T15:17:00,794 copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data 2021-07-29T15:17:00,797 creating build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,798 copying Python/asap3/md/md.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,800 copying Python/asap3/md/verlet.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,802 copying Python/asap3/md/nptberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,804 copying Python/asap3/md/velocitydistribution.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,805 copying Python/asap3/md/nvtberendsen.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,807 copying Python/asap3/md/langevin.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,809 copying Python/asap3/md/npt.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,811 copying Python/asap3/md/__init__.py -> build/lib.linux-armv7l-3.9/asap3/md 2021-07-29T15:17:00,813 creating build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T15:17:00,814 copying Python/asap3/visualize/colortable.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T15:17:00,817 copying Python/asap3/visualize/fieldplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T15:17:00,820 copying Python/asap3/visualize/primiplotter.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T15:17:00,823 copying Python/asap3/visualize/__init__.py -> build/lib.linux-armv7l-3.9/asap3/visualize 2021-07-29T15:17:00,840 running build_ext 2021-07-29T15:17:00,846 building '_asap' extension 2021-07-29T15:17:00,848 creating build/temp.linux-armv7l-3.9 2021-07-29T15:17:00,849 creating build/temp.linux-armv7l-3.9/Basics 2021-07-29T15:17:00,850 creating build/temp.linux-armv7l-3.9/Brenner 2021-07-29T15:17:00,851 creating build/temp.linux-armv7l-3.9/Interface 2021-07-29T15:17:00,852 creating build/temp.linux-armv7l-3.9/PTM 2021-07-29T15:17:00,853 creating build/temp.linux-armv7l-3.9/PTM/qcprot 2021-07-29T15:17:00,854 creating build/temp.linux-armv7l-3.9/PTM/voronoi 2021-07-29T15:17:00,855 creating build/temp.linux-armv7l-3.9/Parallel 2021-07-29T15:17:00,855 creating build/temp.linux-armv7l-3.9/ParallelInterface 2021-07-29T15:17:00,856 creating build/temp.linux-armv7l-3.9/Potentials 2021-07-29T15:17:00,857 creating build/temp.linux-armv7l-3.9/Tools 2021-07-29T15:17:00,858 creating build/temp.linux-armv7l-3.9/VersionInfo_autogen 2021-07-29T15:17:00,858 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/AsapObject.cpp -o build/temp.linux-armv7l-3.9/Basics/AsapObject.o 2021-07-29T15:17:02,412 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Debug.cpp -o build/temp.linux-armv7l-3.9/Basics/Debug.o 2021-07-29T15:17:04,099 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/DynamicAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o 2021-07-29T15:17:06,854 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Exception.cpp -o build/temp.linux-armv7l-3.9/Basics/Exception.o 2021-07-29T15:17:09,062 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImageAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o 2021-07-29T15:17:10,615 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:10,615 from Basics/ImageAtoms.h:31, 2021-07-29T15:17:10,615 from Basics/ImageAtoms.cpp:27: 2021-07-29T15:17:10,616 Basics/ImageAtoms.cpp: In destructor ‘virtual AsapNS::ImageAtoms::~ImageAtoms()’: 2021-07-29T15:17:10,616 Basics/Exception.h:158:5: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 2021-07-29T15:17:10,616 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T15:17:10,616 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:10,616 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T15:17:10,616 52 | ASSERT(refcount == 0); 2021-07-29T15:17:10,617 | ^~~~~~ 2021-07-29T15:17:10,617 Basics/Exception.h:158:5: note: in C++11 destructors default to ‘noexcept’ 2021-07-29T15:17:10,617 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) 2021-07-29T15:17:10,617 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:10,617 Basics/ImageAtoms.cpp:52:3: note: in expansion of macro ‘ASSERT’ 2021-07-29T15:17:10,617 52 | ASSERT(refcount == 0); 2021-07-29T15:17:10,618 | ^~~~~~ 2021-07-29T15:17:10,618 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T15:17:10,618 Basics/ImageAtoms.cpp:82:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,618 82 | if (pos.capacity() < nTot) 2021-07-29T15:17:10,618 | ~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T15:17:10,618 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:10,618 from Basics/ImageAtoms.h:31, 2021-07-29T15:17:10,619 from Basics/ImageAtoms.cpp:27: 2021-07-29T15:17:10,619 Basics/ImageAtoms.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,619 84 | ASSERT(allpositions.size() >= nTot); 2021-07-29T15:17:10,619 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:17:10,619 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,619 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,619 | ^~ 2021-07-29T15:17:10,623 Basics/ImageAtoms.cpp:86:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,623 86 | ASSERT(pos.size() == nTot); 2021-07-29T15:17:10,623 | ~~~~~~~~~~~^~~~~~~ 2021-07-29T15:17:10,623 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,623 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,623 | ^~ 2021-07-29T15:17:10,624 Basics/ImageAtoms.cpp: In member function ‘virtual void AsapNS::ImageAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T15:17:10,624 Basics/ImageAtoms.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,624 95 | ASSERT(allpositions.size() >= n); 2021-07-29T15:17:10,624 | ~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T15:17:10,624 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,624 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,625 | ^~ 2021-07-29T15:17:10,625 Basics/ImageAtoms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,625 97 | if (pos.capacity() < n) 2021-07-29T15:17:10,625 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:10,644 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:10,645 from Basics/ImageAtoms.h:31, 2021-07-29T15:17:10,645 from Basics/ImageAtoms.cpp:27: 2021-07-29T15:17:10,645 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::make_images(double)’: 2021-07-29T15:17:10,645 Basics/ImageAtoms.cpp:170:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,645 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); 2021-07-29T15:17:10,645 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:10,645 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,646 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,646 | ^~ 2021-07-29T15:17:10,648 Basics/ImageAtoms.cpp:221:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,649 221 | if (allpositions.capacity() < nSize) 2021-07-29T15:17:10,649 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:17:10,649 Basics/ImageAtoms.cpp:223:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,649 223 | if (allnumbers.capacity() < nSize) 2021-07-29T15:17:10,649 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:17:10,650 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:10,651 from Basics/ImageAtoms.h:31, 2021-07-29T15:17:10,651 from Basics/ImageAtoms.cpp:27: 2021-07-29T15:17:10,651 Basics/ImageAtoms.cpp: In member function ‘void AsapNS::ImageAtoms::update_images()’: 2021-07-29T15:17:10,651 Basics/ImageAtoms.cpp:238:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,651 238 | ASSERT(allpositions.size() <= nSize); 2021-07-29T15:17:10,651 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:17:10,652 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,652 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,652 | ^~ 2021-07-29T15:17:10,652 Basics/ImageAtoms.cpp:241:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:10,652 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); 2021-07-29T15:17:10,652 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:10,653 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:10,653 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:10,653 | ^~ 2021-07-29T15:17:13,153 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/ImagePotential.cpp -o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o 2021-07-29T15:17:14,821 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::Vec]’: 2021-07-29T15:17:14,821 Basics/ImagePotential.cpp:93:38: required from here 2021-07-29T15:17:14,821 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:14,821 139 | for (int i = 0; i < orig_map.size(); i++) 2021-07-29T15:17:14,822 | ~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:17:14,828 Basics/ImagePotential.cpp: In instantiation of ‘void AsapNS::ImagePotential::CollectFromImages(std::vector&) [with T = AsapNS::SymTensor]’: 2021-07-29T15:17:14,828 Basics/ImagePotential.cpp:118:45: required from here 2021-07-29T15:17:14,828 Basics/ImagePotential.cpp:139:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:16,358 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Langevin.cpp -o build/temp.linux-armv7l-3.9/Basics/Langevin.o 2021-07-29T15:17:18,953 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Matrix3x3.cpp -o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o 2021-07-29T15:17:20,092 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MolecularDynamics.cpp -o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o 2021-07-29T15:17:21,556 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:21,557 from Basics/MolecularDynamics.h:30, 2021-07-29T15:17:21,557 from Basics/MolecularDynamics.cpp:27: 2021-07-29T15:17:21,557 Basics/MolecularDynamics.cpp: In member function ‘bool AsapNS::MolecularDynamics::CallObservers(PyObject*)’: 2021-07-29T15:17:21,557 Basics/MolecularDynamics.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<_object*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:21,558 237 | ASSERT(n == obs_kwargs.size()); 2021-07-29T15:17:21,558 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:21,558 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:21,558 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:21,558 | ^~ 2021-07-29T15:17:22,891 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/MonteCarloAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o 2021-07-29T15:17:25,487 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborCellLocator.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o 2021-07-29T15:17:27,240 Basics/NeighborCellLocator.cpp: In destructor ‘virtual AsapNS::NeighborCellLocator::~NeighborCellLocator()’: 2021-07-29T15:17:27,240 Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:27,240 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T15:17:27,240 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:27,243 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:27,244 from Basics/NeighborCellLocator.h:35, 2021-07-29T15:17:27,244 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T15:17:27,244 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::MakeList()’: 2021-07-29T15:17:27,244 Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,244 128 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T15:17:27,244 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T15:17:27,245 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,245 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,245 | ^~ 2021-07-29T15:17:27,255 Basics/NeighborCellLocator.cpp:324:42: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,255 324 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) 2021-07-29T15:17:27,256 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:17:27,256 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:27,256 from Basics/NeighborCellLocator.h:35, 2021-07-29T15:17:27,256 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T15:17:27,256 Basics/NeighborCellLocator.cpp:335:27: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,256 335 | ASSERT(cells.size() == nTotalCells[3]); 2021-07-29T15:17:27,257 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:17:27,257 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,257 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,257 | ^~ 2021-07-29T15:17:27,257 Basics/NeighborCellLocator.cpp:336:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:27,257 336 | for (int i = 0; i < cells.size(); i++) 2021-07-29T15:17:27,258 | ~~^~~~~~~~~~~~~~ 2021-07-29T15:17:27,258 Basics/NeighborCellLocator.cpp:372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:27,258 372 | for (int i = 0; i < cells.size(); i++) 2021-07-29T15:17:27,258 | ~~^~~~~~~~~~~~~~ 2021-07-29T15:17:27,275 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::MakeNeighboringCellLists()’: 2021-07-29T15:17:27,275 Basics/NeighborCellLocator.cpp:487:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:27,275 487 | for (int i = 0; i < nbCells_onthefly.size(); ++i) 2021-07-29T15:17:27,276 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:27,276 Basics/NeighborCellLocator.cpp:490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:27,276 490 | for (int i = 0; i < cells.size(); i++) 2021-07-29T15:17:27,276 | ~~^~~~~~~~~~~~~~ 2021-07-29T15:17:27,337 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:27,337 from Basics/NeighborCellLocator.h:35, 2021-07-29T15:17:27,337 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T15:17:27,337 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::ScaleAndNormalizePositions()’: 2021-07-29T15:17:27,338 Basics/NeighborCellLocator.cpp:1041:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,338 1041 | ASSERT(scaledPositions.size() == nAllAtoms); 2021-07-29T15:17:27,338 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T15:17:27,338 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,338 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,338 | ^~ 2021-07-29T15:17:27,338 Basics/NeighborCellLocator.cpp:1048:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,339 1048 | if (wrappedPositions.capacity() < spsz) 2021-07-29T15:17:27,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T15:17:27,339 Basics/NeighborCellLocator.cpp:1051:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,339 1051 | if (offsetPositions.capacity() < spsz) 2021-07-29T15:17:27,339 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T15:17:27,340 Basics/NeighborCellLocator.cpp:1088:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,341 1088 | if (wrappedPositions.capacity() < spsz) 2021-07-29T15:17:27,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T15:17:27,341 Basics/NeighborCellLocator.cpp:1091:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,341 1091 | if (scaledOffsetPositions.capacity() < spsz) 2021-07-29T15:17:27,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 2021-07-29T15:17:27,356 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:27,357 from Basics/NeighborCellLocator.h:35, 2021-07-29T15:17:27,357 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T15:17:27,357 Basics/NeighborCellLocator.cpp: In member function ‘void AsapNS::NeighborCellLocator::RenormalizePositions()’: 2021-07-29T15:17:27,357 Basics/NeighborCellLocator.cpp:1263:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,357 1263 | ASSERT(referencePositions.size() == nAtoms); 2021-07-29T15:17:27,358 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:17:27,358 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,358 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,358 | ^~ 2021-07-29T15:17:27,358 Basics/NeighborCellLocator.cpp:1264:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,358 1264 | ASSERT(offsetPositions.size() == nAllAtoms); 2021-07-29T15:17:27,358 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T15:17:27,358 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,359 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,359 | ^~ 2021-07-29T15:17:27,361 Basics/NeighborCellLocator.cpp:1281:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,361 1281 | ASSERT(wrappedPositions.size() == nAllAtoms); 2021-07-29T15:17:27,361 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T15:17:27,361 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:27,361 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:27,362 | ^~ 2021-07-29T15:17:27,376 Basics/NeighborCellLocator.cpp: In member function ‘virtual void AsapNS::NeighborCellLocator::print_info(int)’: 2021-07-29T15:17:27,377 Basics/NeighborCellLocator.cpp:1412:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,377 1412 | if (referencePositions.size() > n) 2021-07-29T15:17:27,377 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:27,378 Basics/NeighborCellLocator.cpp:1414:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,378 1414 | if (wrappedPositions.size() > n) 2021-07-29T15:17:27,379 | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:27,380 Basics/NeighborCellLocator.cpp:1416:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,380 1416 | if (scaledPositions.size() > n) 2021-07-29T15:17:27,380 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:27,381 Basics/NeighborCellLocator.cpp:1418:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,381 1418 | if (offsetPositions.size() > n) 2021-07-29T15:17:27,381 | ~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:27,382 Basics/NeighborCellLocator.cpp:1420:36: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,382 1420 | if (scaledOffsetPositions.size() > n) 2021-07-29T15:17:27,382 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:27,388 Basics/NeighborCellLocator.cpp: In member function ‘virtual long int AsapNS::NeighborCellLocator::PrintMemory() const’: 2021-07-29T15:17:27,388 Basics/NeighborCellLocator.cpp:1452:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:27,388 1452 | if (i->size() > longest) 2021-07-29T15:17:27,388 | ~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:17:28,015 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:17:28,015 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:17:28,015 from Basics/NeighborCellLocator.cpp:30: 2021-07-29T15:17:28,015 Interface/Templates.h: At global scope: 2021-07-29T15:17:28,015 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:17:28,016 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:17:28,016 | ^~~~~~~~~~~~~~ 2021-07-29T15:17:34,342 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList.o 2021-07-29T15:17:36,054 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::MakeList()’: 2021-07-29T15:17:36,055 Basics/NeighborList.cpp:126:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,055 126 | if (nAllAtoms != nbList.size()) 2021-07-29T15:17:36,055 | ~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,055 Basics/NeighborList.cpp:128:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,056 128 | if (fulllists && (nAllAtoms != complNbList.size())) 2021-07-29T15:17:36,056 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,074 Basics/NeighborList.cpp:200:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,074 200 | if (nbList[i].capacity() < reservedLength) 2021-07-29T15:17:36,075 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,075 Basics/NeighborList.cpp:210:38: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,075 210 | if (complNbList[i].capacity() < reservedLength) 2021-07-29T15:17:36,075 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,081 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T15:17:36,082 Basics/NeighborList.cpp:359:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,082 359 | if (size < nbList[a1].size()) 2021-07-29T15:17:36,082 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,091 Basics/NeighborList.cpp: In member function ‘virtual int AsapNS::NeighborList::GetFullNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T15:17:36,091 Basics/NeighborList.cpp:479:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,091 479 | if (size < nbList[a1].size() + complNbList[a1].size()) 2021-07-29T15:17:36,091 | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,128 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::RemakeLists(const std::set&, std::set&)’: 2021-07-29T15:17:36,128 Basics/NeighborList.cpp:626:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T15:17:36,128 626 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != complNbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T15:17:36,131 Basics/NeighborList.cpp:656:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-29T15:17:36,131 656 | while ((NEIGHBOR_INDEX(*k) != *i) && (k != nbList[NEIGHBOR_INDEX(*j)].end())) 2021-07-29T15:17:36,146 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::CheckFullListConsistency(std::string, bool)’: 2021-07-29T15:17:36,147 Basics/NeighborList.cpp:757:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,147 757 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T15:17:36,147 Basics/NeighborList.cpp:759:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,147 759 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T15:17:36,159 Basics/NeighborList.cpp:796:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,159 796 | while (NEIGHBOR_INDEX(*k) != i && k != k_end) 2021-07-29T15:17:36,159 Basics/NeighborList.cpp:798:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:17:36,159 798 | if (NEIGHBOR_INDEX(*k) != i) 2021-07-29T15:17:36,170 Basics/NeighborList.cpp: In member function ‘virtual void AsapNS::NeighborList::print_info(int)’: 2021-07-29T15:17:36,170 Basics/NeighborList.cpp:835:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,170 835 | for (int i = 0; i < nbList[n].size(); i++) 2021-07-29T15:17:36,170 | ~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,172 Basics/NeighborList.cpp:841:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,172 841 | for (int i = 0; i < complNbList[n].size(); i++) 2021-07-29T15:17:36,172 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,182 Basics/NeighborList.cpp: In member function ‘void AsapNS::NeighborList::update_translationvectors()’: 2021-07-29T15:17:36,182 Basics/NeighborList.cpp:911:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:36,182 911 | for (int i = 0; i < translationTable.size(); i++) 2021-07-29T15:17:36,182 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:36,653 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:17:36,654 from Basics/NeighborList.h:37, 2021-07-29T15:17:36,654 from Basics/NeighborList.cpp:29: 2021-07-29T15:17:36,654 Interface/Templates.h: At global scope: 2021-07-29T15:17:36,654 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:17:36,654 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:17:36,654 | ^~~~~~~~~~~~~~ 2021-07-29T15:17:37,767 In file included from /usr/include/c++/10/vector:72, 2021-07-29T15:17:37,767 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:37,767 from Basics/Atoms.h:36, 2021-07-29T15:17:37,767 from Basics/NeighborLocator.h:41, 2021-07-29T15:17:37,767 from Basics/NeighborList.h:37, 2021-07-29T15:17:37,768 from Basics/NeighborList.cpp:29: 2021-07-29T15:17:37,768 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T15:17:37,768 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:37,768 721 | vector<_Tp, _Alloc>:: 2021-07-29T15:17:37,768 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:37,768 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:37,768 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:37,859 In file included from /usr/include/c++/10/vector:67, 2021-07-29T15:17:37,859 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:37,859 from Basics/Atoms.h:36, 2021-07-29T15:17:37,859 from Basics/NeighborLocator.h:41, 2021-07-29T15:17:37,859 from Basics/NeighborList.h:37, 2021-07-29T15:17:37,859 from Basics/NeighborList.cpp:29: 2021-07-29T15:17:37,860 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T15:17:37,860 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:37,860 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:37,860 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:37,860 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:37,860 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:37,860 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:37,875 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T15:17:37,875 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:37,875 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:37,875 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:37,875 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:37,875 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:37,876 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:40,792 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NeighborList2013.cpp -o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o 2021-07-29T15:17:42,489 Basics/NeighborList2013.cpp: In member function ‘virtual int AsapNS::NeighborList2013::GetNeighbors(int, int*, AsapNS::Vec*, double*, int&, double) const’: 2021-07-29T15:17:42,489 Basics/NeighborList2013.cpp:33:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:17:42,489 33 | if (size < nbList[a1].size()) 2021-07-29T15:17:42,489 | ~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:42,696 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:17:42,696 from Basics/NeighborList.h:37, 2021-07-29T15:17:42,697 from Basics/NeighborList2013.h:11, 2021-07-29T15:17:42,697 from Basics/NeighborList2013.cpp:8: 2021-07-29T15:17:42,697 Interface/Templates.h: At global scope: 2021-07-29T15:17:42,697 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:17:42,697 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:17:42,697 | ^~~~~~~~~~~~~~ 2021-07-29T15:17:43,121 In file included from /usr/include/c++/10/vector:72, 2021-07-29T15:17:43,122 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:43,122 from Basics/Atoms.h:36, 2021-07-29T15:17:43,122 from Basics/NeighborLocator.h:41, 2021-07-29T15:17:43,122 from Basics/NeighborList.h:37, 2021-07-29T15:17:43,122 from Basics/NeighborList2013.h:11, 2021-07-29T15:17:43,122 from Basics/NeighborList2013.cpp:8: 2021-07-29T15:17:43,122 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T15:17:43,123 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:43,123 721 | vector<_Tp, _Alloc>:: 2021-07-29T15:17:43,123 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:43,123 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:43,123 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:43,224 In file included from /usr/include/c++/10/vector:67, 2021-07-29T15:17:43,224 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:43,224 from Basics/Atoms.h:36, 2021-07-29T15:17:43,224 from Basics/NeighborLocator.h:41, 2021-07-29T15:17:43,225 from Basics/NeighborList.h:37, 2021-07-29T15:17:43,225 from Basics/NeighborList2013.h:11, 2021-07-29T15:17:43,225 from Basics/NeighborList2013.cpp:8: 2021-07-29T15:17:43,225 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborCellLocator::GetWrappedPositions(std::vector&) const’: 2021-07-29T15:17:43,225 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:43,225 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:43,225 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:43,225 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:43,225 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:43,226 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:43,240 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NeighborList::GetWrappedPositions(std::vector&) const’: 2021-07-29T15:17:43,240 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:43,240 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:43,240 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:43,240 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:43,241 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:43,241 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:43,762 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/NormalAtoms.cpp -o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o 2021-07-29T15:17:45,312 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_numbers(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T15:17:45,312 Basics/NormalAtoms.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,312 427 | if (numbers.size() != nAtoms+nGhosts) 2021-07-29T15:17:45,312 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:17:45,315 Basics/NormalAtoms.cpp: In member function ‘virtual bool AsapNS::NormalAtoms::check_positions(PyArrayObject*, PyArrayObject*, bool)’: 2021-07-29T15:17:45,316 Basics/NormalAtoms.cpp:472:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,316 472 | bool pos_resized = (positions.size() != nAtoms+nGhosts); 2021-07-29T15:17:45,316 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:17:45,319 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:45,319 from Basics/NormalAtoms.cpp:27: 2021-07-29T15:17:45,320 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T15:17:45,320 Basics/NormalAtoms.cpp:530:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,320 530 | ASSERT(positions.size() == nAtoms + nGhosts); 2021-07-29T15:17:45,320 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:45,320 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:45,320 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:45,320 | ^~ 2021-07-29T15:17:45,321 Basics/NormalAtoms.cpp:531:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,321 531 | if (pos.capacity() < nAtoms + nGhosts) 2021-07-29T15:17:45,321 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:45,325 Basics/NormalAtoms.cpp:537:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T15:17:45,325 537 | if (pos.capacity() < nAtoms) 2021-07-29T15:17:45,325 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:17:45,325 In file included from Basics/AsapPython.h:44, 2021-07-29T15:17:45,326 from Basics/NormalAtoms.cpp:27: 2021-07-29T15:17:45,326 Basics/NormalAtoms.cpp:540:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-29T15:17:45,326 540 | ASSERT(pos.size() == nAtoms); 2021-07-29T15:17:45,326 | ~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:17:45,326 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:45,326 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:45,326 | ^~ 2021-07-29T15:17:45,327 Basics/NormalAtoms.cpp: In member function ‘virtual void AsapNS::NormalAtoms::GetScaledPositions(std::vector&, bool)’: 2021-07-29T15:17:45,327 Basics/NormalAtoms.cpp:552:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,327 552 | ASSERT(positions.size() >= n); 2021-07-29T15:17:45,327 | ~~~~~~~~~~~~~~~~~^~~~ 2021-07-29T15:17:45,327 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:17:45,327 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:17:45,328 | ^~ 2021-07-29T15:17:45,328 Basics/NormalAtoms.cpp:554:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:17:45,328 554 | if (pos.capacity() < n) 2021-07-29T15:17:45,328 | ~~~~~~~~~~~~~~~^~~ 2021-07-29T15:17:46,795 In file included from /usr/include/c++/10/vector:72, 2021-07-29T15:17:46,796 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:46,796 from Basics/NormalAtoms.h:33, 2021-07-29T15:17:46,796 from Basics/NormalAtoms.cpp:29: 2021-07-29T15:17:46,796 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = AsapNS::Vec; _Alloc = std::allocator]’: 2021-07-29T15:17:46,796 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:46,796 721 | vector<_Tp, _Alloc>:: 2021-07-29T15:17:46,797 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:46,797 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:46,797 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:47,924 In file included from /usr/include/c++/10/vector:67, 2021-07-29T15:17:47,924 from Basics/AtomsBasis.h:33, 2021-07-29T15:17:47,924 from Basics/NormalAtoms.h:33, 2021-07-29T15:17:47,924 from Basics/NormalAtoms.cpp:29: 2021-07-29T15:17:47,925 /usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void AsapNS::NormalAtoms::GetPositions(std::vector&, bool) const’: 2021-07-29T15:17:47,925 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:47,925 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:47,925 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:47,925 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:47,925 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:47,925 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:47,926 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:17:47,926 1665 | _M_range_insert(__pos, __first, __last, 2021-07-29T15:17:47,926 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:47,926 1666 | std::__iterator_category(__first)); 2021-07-29T15:17:47,926 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:17:47,926 /usr/include/c++/10/bits/stl_vector.h:1665:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:17:49,052 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/RandomNumbers.cpp -o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o 2021-07-29T15:17:50,867 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Timing.cpp -o build/temp.linux-armv7l-3.9/Basics/Timing.o 2021-07-29T15:17:52,553 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/Vec.cpp -o build/temp.linux-armv7l-3.9/Basics/Vec.o 2021-07-29T15:17:53,662 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Basics/VelocityVerlet.cpp -o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o 2021-07-29T15:17:56,034 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/BrennerPotential.cpp -o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o 2021-07-29T15:17:58,074 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:17:58,075 from Basics/NeighborList.h:37, 2021-07-29T15:17:58,075 from Brenner/BrennerPotential.h:32, 2021-07-29T15:17:58,075 from Brenner/BrennerPotential.cpp:26: 2021-07-29T15:17:58,075 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:17:58,075 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:17:58,075 | ^~~~~~~~~~~~~~ 2021-07-29T15:17:59,226 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/bcuint.cpp -o build/temp.linux-armv7l-3.9/Brenner/bcuint.o 2021-07-29T15:18:01,133 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:01,134 from Basics/NeighborList.h:37, 2021-07-29T15:18:01,134 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:01,135 from Brenner/bcuint.cpp:27: 2021-07-29T15:18:01,135 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:01,135 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:01,136 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:01,732 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/caguts.cpp -o build/temp.linux-armv7l-3.9/Brenner/caguts.o 2021-07-29T15:18:03,751 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:03,751 from Basics/NeighborList.h:37, 2021-07-29T15:18:03,751 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:03,751 from Brenner/caguts.cpp:44: 2021-07-29T15:18:03,751 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:03,752 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:03,752 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:04,645 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/expand.cpp -o build/temp.linux-armv7l-3.9/Brenner/expand.o 2021-07-29T15:18:05,886 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/inter2d_iv.cpp -o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o 2021-07-29T15:18:06,022 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/mtable.cpp -o build/temp.linux-armv7l-3.9/Brenner/mtable.o 2021-07-29T15:18:07,916 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:07,917 from Basics/NeighborList.h:37, 2021-07-29T15:18:07,917 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:07,917 from Brenner/mtable.cpp:7: 2021-07-29T15:18:07,917 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:07,917 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:07,917 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:08,521 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/pibond.cpp -o build/temp.linux-armv7l-3.9/Brenner/pibond.o 2021-07-29T15:18:10,549 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:10,549 from Basics/NeighborList.h:37, 2021-07-29T15:18:10,549 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:10,549 from Brenner/pibond.cpp:7: 2021-07-29T15:18:10,549 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:10,549 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:10,550 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:12,918 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radic.cpp -o build/temp.linux-armv7l-3.9/Brenner/radic.o 2021-07-29T15:18:14,794 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:14,795 from Basics/NeighborList.h:37, 2021-07-29T15:18:14,795 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:14,795 from Brenner/asapbrenner.h:7, 2021-07-29T15:18:14,795 from Brenner/radic.cpp:27: 2021-07-29T15:18:14,795 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:14,795 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:14,795 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:15,334 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/radicdata.cpp -o build/temp.linux-armv7l-3.9/Brenner/radicdata.o 2021-07-29T15:18:15,823 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/sili_germ.cpp -o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o 2021-07-29T15:18:17,790 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:17,790 from Basics/NeighborList.h:37, 2021-07-29T15:18:17,791 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:17,791 from Brenner/sili_germ.cpp:7: 2021-07-29T15:18:17,791 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:17,791 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:17,791 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:18,416 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Brenner/spgch.cpp -o build/temp.linux-armv7l-3.9/Brenner/spgch.o 2021-07-29T15:18:20,297 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:20,298 from Basics/NeighborList.h:37, 2021-07-29T15:18:20,298 from Brenner/BrennerPotential.h:32, 2021-07-29T15:18:20,298 from Brenner/asapbrenner.h:7, 2021-07-29T15:18:20,298 from Brenner/spgch.h:4, 2021-07-29T15:18:20,298 from Brenner/spgch.cpp:1: 2021-07-29T15:18:20,298 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:20,298 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:20,298 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:20,428 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/DynamicsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o 2021-07-29T15:18:21,958 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:21,958 from Interface/DynamicsInterface.h:29, 2021-07-29T15:18:21,958 from Interface/DynamicsInterface.cpp:26: 2021-07-29T15:18:21,958 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:21,959 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:21,959 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:21,959 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:21,959 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:21,959 | ^~ 2021-07-29T15:18:21,960 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:21,960 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:21,960 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:21,960 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:21,960 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:21,961 | ^~ 2021-07-29T15:18:21,968 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:21,968 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:21,968 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:21,968 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:21,969 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:21,969 | ^~ 2021-07-29T15:18:21,970 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:21,970 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:21,970 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:21,970 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:21,970 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:21,971 | ^~ 2021-07-29T15:18:21,980 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:21,980 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:21,981 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:21,981 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:21,981 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:21,981 | ^~ 2021-07-29T15:18:21,986 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_VelocityVerletInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,986 Interface/DynamicsInterface.cpp:72:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,987 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T15:18:21,987 | ^~~~~~~ 2021-07-29T15:18:21,987 Interface/DynamicsInterface.cpp:72:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,987 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T15:18:21,987 | ^~~~~~ 2021-07-29T15:18:21,987 Interface/DynamicsInterface.cpp:72:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,988 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; 2021-07-29T15:18:21,988 | ^~~~~~~~~~ 2021-07-29T15:18:21,988 Interface/DynamicsInterface.cpp: In function ‘int AsapNS::PyAsap_LangevinInit(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,988 Interface/DynamicsInterface.cpp:111:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,989 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,989 | ^~~~~~~ 2021-07-29T15:18:21,989 Interface/DynamicsInterface.cpp:111:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,989 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,989 | ^~~~~~ 2021-07-29T15:18:21,989 Interface/DynamicsInterface.cpp:111:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,989 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,990 | ^~~~~~~~~~ 2021-07-29T15:18:21,990 Interface/DynamicsInterface.cpp:111:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,990 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,990 | ^~~~~~~ 2021-07-29T15:18:21,990 Interface/DynamicsInterface.cpp:111:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,990 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,990 | ^~~~~~~ 2021-07-29T15:18:21,991 Interface/DynamicsInterface.cpp:111:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,991 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,991 | ^~~~ 2021-07-29T15:18:21,991 Interface/DynamicsInterface.cpp:111:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,991 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,991 | ^~~~ 2021-07-29T15:18:21,991 Interface/DynamicsInterface.cpp:111:87: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,992 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,992 | ^~~~~~~ 2021-07-29T15:18:21,992 Interface/DynamicsInterface.cpp:111:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,992 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; 2021-07-29T15:18:21,992 | ^~~~~~ 2021-07-29T15:18:21,992 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DynamicsRun(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,993 Interface/DynamicsInterface.cpp:157:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,993 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T15:18:21,993 | ^~~~~~~ 2021-07-29T15:18:21,993 Interface/DynamicsInterface.cpp:157:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,993 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T15:18:21,993 | ^~~~~~~~~~~ 2021-07-29T15:18:21,993 Interface/DynamicsInterface.cpp:157:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,994 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; 2021-07-29T15:18:21,994 | ^~~~~ 2021-07-29T15:18:21,994 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetScalarConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,994 Interface/DynamicsInterface.cpp:185:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,994 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,994 | ^~~~~~ 2021-07-29T15:18:21,994 Interface/DynamicsInterface.cpp:185:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,995 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,995 | ^~~~ 2021-07-29T15:18:21,995 Interface/DynamicsInterface.cpp:185:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,995 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,995 | ^~~~ 2021-07-29T15:18:21,995 Interface/DynamicsInterface.cpp:185:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,995 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,996 | ^~~~~~~ 2021-07-29T15:18:21,996 Interface/DynamicsInterface.cpp:185:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,996 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,996 | ^~~~~~ 2021-07-29T15:18:21,996 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvSetVectorConstants(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,996 Interface/DynamicsInterface.cpp:209:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,997 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,997 | ^~~~~~ 2021-07-29T15:18:21,997 Interface/DynamicsInterface.cpp:209:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,997 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,997 | ^~~~ 2021-07-29T15:18:21,997 Interface/DynamicsInterface.cpp:209:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,997 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,997 | ^~~~ 2021-07-29T15:18:21,998 Interface/DynamicsInterface.cpp:209:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,998 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,998 | ^~~~~~~ 2021-07-29T15:18:21,998 Interface/DynamicsInterface.cpp:209:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,998 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; 2021-07-29T15:18:21,998 | ^~~~~~ 2021-07-29T15:18:21,998 Interface/DynamicsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_LgvGetRandom(AsapNS::PyAsap_DynamicsObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:21,999 Interface/DynamicsInterface.cpp:246:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:21,999 246 | static char *kwlist[] = {"gaussian", NULL}; 2021-07-29T15:18:21,999 | ^~~~~~~~~~ 2021-07-29T15:18:22,731 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o 2021-07-29T15:18:24,228 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:24,229 from Interface/EMTParameterProviderInterface.cpp:28: 2021-07-29T15:18:24,229 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:24,229 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:24,229 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:24,229 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:24,229 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:24,229 | ^~ 2021-07-29T15:18:24,240 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:24,240 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:24,240 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:24,240 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:24,241 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:24,241 | ^~ 2021-07-29T15:18:24,250 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:24,250 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:24,250 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:24,250 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:24,250 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:24,250 | ^~ 2021-07-29T15:18:24,261 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:24,262 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:24,262 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:24,262 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:24,262 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:24,262 | ^~ 2021-07-29T15:18:24,273 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:24,273 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:24,273 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:24,273 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:24,273 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:24,273 | ^~ 2021-07-29T15:18:24,702 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ExceptionInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o 2021-07-29T15:18:26,214 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/NeighborLocatorInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o 2021-07-29T15:18:27,723 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:27,724 from Interface/NeighborLocatorInterface.cpp:27: 2021-07-29T15:18:27,724 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:27,724 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:27,724 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:27,724 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:27,724 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:27,724 | ^~ 2021-07-29T15:18:27,734 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:27,734 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:27,734 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:27,734 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:27,734 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:27,735 | ^~ 2021-07-29T15:18:27,742 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:27,743 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:27,743 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:27,743 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:27,743 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:27,743 | ^~ 2021-07-29T15:18:27,753 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:27,754 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:27,754 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:27,754 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:27,754 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:27,754 | ^~ 2021-07-29T15:18:27,764 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:27,764 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:27,764 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:27,764 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:27,765 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:27,765 | ^~ 2021-07-29T15:18:27,965 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborList_Py(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:27,965 Interface/NeighborLocatorInterface.cpp:160:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,965 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T15:18:27,965 | ^~~~~~ 2021-07-29T15:18:27,966 Interface/NeighborLocatorInterface.cpp:160:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,966 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T15:18:27,966 | ^~~~~~~ 2021-07-29T15:18:27,966 Interface/NeighborLocatorInterface.cpp:160:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,966 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T15:18:27,966 | ^~~~~~~~~~~~~ 2021-07-29T15:18:27,966 Interface/NeighborLocatorInterface.cpp:160:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,967 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; 2021-07-29T15:18:27,967 | ^~~~~~ 2021-07-29T15:18:27,968 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NewNeighborCellLocator_Serial(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:27,968 Interface/NeighborLocatorInterface.cpp:211:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,968 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:18:27,968 | ^~~~~~ 2021-07-29T15:18:27,968 Interface/NeighborLocatorInterface.cpp:211:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,968 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:18:27,969 | ^~~~~~~ 2021-07-29T15:18:27,969 Interface/NeighborLocatorInterface.cpp:211:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:27,969 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:18:27,969 | ^~~~~~~~~~~~~ 2021-07-29T15:18:28,002 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNBQuery(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:28,002 Interface/NeighborLocatorInterface.cpp:390:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:28,002 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T15:18:28,003 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:28,003 Interface/NeighborLocatorInterface.cpp:390:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:28,003 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; 2021-07-29T15:18:28,003 | ^~~~~~ 2021-07-29T15:18:28,008 Interface/NeighborLocatorInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_NBL_GetNB(AsapNS::PyAsap_NeighborLocatorObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:28,008 Interface/NeighborLocatorInterface.cpp:481:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:28,009 481 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T15:18:28,009 | ^~~ 2021-07-29T15:18:28,009 Interface/NeighborLocatorInterface.cpp:481:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:28,009 481 | static char *kwlist[] = {"n", "rCut", NULL}; 2021-07-29T15:18:28,009 | ^~~~~~ 2021-07-29T15:18:30,460 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/OpenMPInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o 2021-07-29T15:18:31,761 Interface/OpenMPInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_set_num_threads(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:31,762 Interface/OpenMPInterface.cpp:82:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:31,762 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T15:18:31,762 | ^~~ 2021-07-29T15:18:31,762 Interface/OpenMPInterface.cpp:82:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:31,762 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; 2021-07-29T15:18:31,763 | ^~~~~~~~~~~~ 2021-07-29T15:18:32,002 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PTMInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o 2021-07-29T15:18:33,641 Interface/PTMInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_PTMall(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:33,641 Interface/PTMInterface.cpp:95:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,641 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T15:18:33,642 | ^~~~~~~ 2021-07-29T15:18:33,642 Interface/PTMInterface.cpp:95:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,642 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T15:18:33,642 | ^~~~~~~~ 2021-07-29T15:18:33,642 Interface/PTMInterface.cpp:95:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,643 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", 2021-07-29T15:18:33,643 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:18:33,643 Interface/PTMInterface.cpp:96:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,643 96 | "calculate_strains", "quick", 2021-07-29T15:18:33,643 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:18:33,643 Interface/PTMInterface.cpp:96:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,643 96 | "calculate_strains", "quick", 2021-07-29T15:18:33,644 | ^~~~~~~ 2021-07-29T15:18:33,644 Interface/PTMInterface.cpp:97:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,644 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T15:18:33,644 | ^~~~~~~~~~~~~~~ 2021-07-29T15:18:33,644 Interface/PTMInterface.cpp:97:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:33,644 97 | "return_nblist", "return_mappings", NULL}; 2021-07-29T15:18:33,644 | ^~~~~~~~~~~~~~~~~ 2021-07-29T15:18:33,667 In file included from /usr/include/python3.9/Python.h:61, 2021-07-29T15:18:33,667 from Basics/AsapPython.h:38, 2021-07-29T15:18:33,668 from Interface/PTMInterface.h:30, 2021-07-29T15:18:33,668 from Interface/PTMInterface.cpp:1: 2021-07-29T15:18:33,668 Interface/PTMInterface.cpp:299:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:18:33,668 299 | assert(m < indices.size()); 2021-07-29T15:18:33,668 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T15:18:33,668 Interface/PTMInterface.cpp:301:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:18:33,668 301 | assert(idx >= 0 && idx < indices.size()); 2021-07-29T15:18:33,669 | ~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:18:33,892 Interface/PTMInterface.cpp: At global scope: 2021-07-29T15:18:33,893 Interface/PTMInterface.cpp:11:18: warning: ‘PyObject* error(PyObject*, char*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:33,893 11 | static PyObject* error(PyObject* type, char* msg) 2021-07-29T15:18:33,893 | ^~~~~ 2021-07-29T15:18:33,893 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:18:33,893 from Interface/PTMInterface.cpp:4: 2021-07-29T15:18:33,894 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:18:33,894 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:18:33,894 | ^~~~~~~~~~~~~~ 2021-07-29T15:18:35,442 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PotentialInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o 2021-07-29T15:18:36,980 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:36,981 from Interface/PotentialInterface.cpp:29: 2021-07-29T15:18:36,981 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:36,981 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:36,981 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:36,981 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:36,981 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:36,982 | ^~ 2021-07-29T15:18:36,991 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:36,991 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:36,991 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:36,992 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:36,992 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:36,992 | ^~ 2021-07-29T15:18:37,000 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:37,000 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:37,000 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:37,000 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:37,001 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:37,001 | ^~ 2021-07-29T15:18:37,011 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:37,011 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:37,011 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:37,011 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:37,011 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:37,012 | ^~ 2021-07-29T15:18:37,021 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:37,021 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:37,022 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:37,022 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:37,022 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:37,022 | ^~ 2021-07-29T15:18:37,280 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,280 Interface/PotentialInterface.cpp:202:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,280 202 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T15:18:37,281 | ^~~~~~ 2021-07-29T15:18:37,281 Interface/PotentialInterface.cpp:202:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,281 202 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T15:18:37,281 | ^~~~~~~~~ 2021-07-29T15:18:37,282 Interface/PotentialInterface.cpp: In function ‘int PyAsap_EMT2013Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,283 Interface/PotentialInterface.cpp:235:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,283 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T15:18:37,283 | ^~~~~~~~~~~~ 2021-07-29T15:18:37,283 Interface/PotentialInterface.cpp:235:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,283 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T15:18:37,283 | ^~~~~~~~~~~~~~~~~ 2021-07-29T15:18:37,284 Interface/PotentialInterface.cpp:235:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,284 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; 2021-07-29T15:18:37,284 | ^~~~~~~~~ 2021-07-29T15:18:37,285 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MonteCarloEMTInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,285 Interface/PotentialInterface.cpp:271:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,285 271 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T15:18:37,285 | ^~~~~~ 2021-07-29T15:18:37,285 Interface/PotentialInterface.cpp:271:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,285 271 | static char *kwlist[] = {"prov", "verbose", NULL}; 2021-07-29T15:18:37,286 | ^~~~~~~~~ 2021-07-29T15:18:37,286 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RGLInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,286 Interface/PotentialInterface.cpp:292:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,287 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,287 | ^~~~~~~~~~ 2021-07-29T15:18:37,287 Interface/PotentialInterface.cpp:292:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,287 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,287 | ^~~ 2021-07-29T15:18:37,287 Interface/PotentialInterface.cpp:292:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,287 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,287 | ^~~ 2021-07-29T15:18:37,288 Interface/PotentialInterface.cpp:292:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,288 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,288 | ^~~ 2021-07-29T15:18:37,288 Interface/PotentialInterface.cpp:292:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,288 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,288 | ^~~~~~ 2021-07-29T15:18:37,288 Interface/PotentialInterface.cpp:292:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,289 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", 2021-07-29T15:18:37,289 | ^~~~ 2021-07-29T15:18:37,289 Interface/PotentialInterface.cpp:293:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,289 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,289 | ^~~~ 2021-07-29T15:18:37,289 Interface/PotentialInterface.cpp:293:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,289 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,290 | ^~~~ 2021-07-29T15:18:37,290 Interface/PotentialInterface.cpp:293:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,290 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,290 | ^~~~ 2021-07-29T15:18:37,290 Interface/PotentialInterface.cpp:293:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,290 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,290 | ^~~~ 2021-07-29T15:18:37,290 Interface/PotentialInterface.cpp:293:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,291 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,291 | ^~~~ 2021-07-29T15:18:37,291 Interface/PotentialInterface.cpp:293:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,291 293 | "p3", "p4", "p5", "q3", "q4", "q5", 2021-07-29T15:18:37,291 | ^~~~ 2021-07-29T15:18:37,291 Interface/PotentialInterface.cpp:294:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,291 294 | "rcs", "rce", "verbose", NULL}; 2021-07-29T15:18:37,292 | ^~~~~ 2021-07-29T15:18:37,292 Interface/PotentialInterface.cpp:294:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,292 294 | "rcs", "rce", "verbose", NULL}; 2021-07-29T15:18:37,292 | ^~~~~ 2021-07-29T15:18:37,292 Interface/PotentialInterface.cpp:294:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,292 294 | "rcs", "rce", "verbose", NULL}; 2021-07-29T15:18:37,292 | ^~~~~~~~~ 2021-07-29T15:18:37,294 Interface/PotentialInterface.cpp: In function ‘int PyAsap_LennardJonesInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,295 Interface/PotentialInterface.cpp:356:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,295 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T15:18:37,295 | ^~~~~~~~~~~~~ 2021-07-29T15:18:37,295 Interface/PotentialInterface.cpp:356:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,295 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T15:18:37,295 | ^~~~~~~~~~ 2021-07-29T15:18:37,295 Interface/PotentialInterface.cpp:356:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,296 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T15:18:37,296 | ^~~~~~~~~ 2021-07-29T15:18:37,296 Interface/PotentialInterface.cpp:356:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,296 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", 2021-07-29T15:18:37,296 | ^~~~~~~ 2021-07-29T15:18:37,296 Interface/PotentialInterface.cpp:357:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,296 357 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,297 | ^~~~~~~~ 2021-07-29T15:18:37,297 Interface/PotentialInterface.cpp:357:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,297 357 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,297 | ^~~~~~ 2021-07-29T15:18:37,297 Interface/PotentialInterface.cpp:357:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,297 357 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,297 | ^~~~~~~~~~ 2021-07-29T15:18:37,298 Interface/PotentialInterface.cpp:357:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,298 357 | "masses", "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,298 | ^~~~~~~~~ 2021-07-29T15:18:37,300 Interface/PotentialInterface.cpp: In function ‘int PyAsap_RahmanStillingerLembergInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,301 Interface/PotentialInterface.cpp:395:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,301 395 | static char *kwlist[] = {"numElements", 2021-07-29T15:18:37,301 | ^~~~~~~~~~~~~ 2021-07-29T15:18:37,301 Interface/PotentialInterface.cpp:396:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,301 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,301 | ^~~~ 2021-07-29T15:18:37,301 Interface/PotentialInterface.cpp:396:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,302 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,302 | ^~~~ 2021-07-29T15:18:37,302 Interface/PotentialInterface.cpp:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,302 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,302 | ^~~ 2021-07-29T15:18:37,302 Interface/PotentialInterface.cpp:396:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,302 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,302 | ^~~~ 2021-07-29T15:18:37,303 Interface/PotentialInterface.cpp:396:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,303 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,303 | ^~~~ 2021-07-29T15:18:37,303 Interface/PotentialInterface.cpp:396:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,303 396 | "D0", "R0", "y", "a1", "b1", "c1", 2021-07-29T15:18:37,303 | ^~~~ 2021-07-29T15:18:37,303 Interface/PotentialInterface.cpp:397:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,303 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,304 | ^~~~ 2021-07-29T15:18:37,304 Interface/PotentialInterface.cpp:397:13: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,304 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,304 | ^~~~ 2021-07-29T15:18:37,304 Interface/PotentialInterface.cpp:397:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,304 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,304 | ^~~~ 2021-07-29T15:18:37,304 Interface/PotentialInterface.cpp:397:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,305 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,305 | ^~~~ 2021-07-29T15:18:37,305 Interface/PotentialInterface.cpp:397:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,305 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,305 | ^~~~ 2021-07-29T15:18:37,305 Interface/PotentialInterface.cpp:397:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,305 397 | "a2", "b2", "c2", "a3", "b3", "c3", 2021-07-29T15:18:37,305 | ^~~~ 2021-07-29T15:18:37,306 Interface/PotentialInterface.cpp:398:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,306 398 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T15:18:37,306 | ^~~~~~~~~~ 2021-07-29T15:18:37,306 Interface/PotentialInterface.cpp:398:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,306 398 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T15:18:37,306 | ^~~~~~~~ 2021-07-29T15:18:37,306 Interface/PotentialInterface.cpp:398:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,306 398 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T15:18:37,307 | ^~~~~~ 2021-07-29T15:18:37,307 Interface/PotentialInterface.cpp:398:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,307 398 | "elements", "masses", "rCut", "verbose", NULL}; 2021-07-29T15:18:37,307 | ^~~~~~~~~ 2021-07-29T15:18:37,307 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterfaceInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,307 Interface/PotentialInterface.cpp:501:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,307 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,308 | ^~~ 2021-07-29T15:18:37,308 Interface/PotentialInterface.cpp:501:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,308 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,308 | ^~~ 2021-07-29T15:18:37,308 Interface/PotentialInterface.cpp:501:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,308 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,308 | ^~~ 2021-07-29T15:18:37,308 Interface/PotentialInterface.cpp:501:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,309 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,309 | ^~~~ 2021-07-29T15:18:37,309 Interface/PotentialInterface.cpp:501:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,309 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,309 | ^~~~ 2021-07-29T15:18:37,309 Interface/PotentialInterface.cpp:501:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,309 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,309 | ^~~~~~~~~ 2021-07-29T15:18:37,309 Interface/PotentialInterface.cpp:502:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,310 502 | "q", "kappa", 2021-07-29T15:18:37,310 | ^~~ 2021-07-29T15:18:37,310 Interface/PotentialInterface.cpp:502:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,310 502 | "q", "kappa", 2021-07-29T15:18:37,310 | ^~~~~~~ 2021-07-29T15:18:37,310 Interface/PotentialInterface.cpp:503:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,310 503 | "D", "alpha", "R0", 2021-07-29T15:18:37,310 | ^~~ 2021-07-29T15:18:37,311 Interface/PotentialInterface.cpp:503:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,311 503 | "D", "alpha", "R0", 2021-07-29T15:18:37,311 | ^~~~~~~ 2021-07-29T15:18:37,311 Interface/PotentialInterface.cpp:503:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,311 503 | "D", "alpha", "R0", 2021-07-29T15:18:37,311 | ^~~~ 2021-07-29T15:18:37,311 Interface/PotentialInterface.cpp:504:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,311 504 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,312 | ^~~ 2021-07-29T15:18:37,312 Interface/PotentialInterface.cpp:504:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,312 504 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,312 | ^~~ 2021-07-29T15:18:37,312 Interface/PotentialInterface.cpp:504:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,312 504 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,312 | ^~~~ 2021-07-29T15:18:37,312 Interface/PotentialInterface.cpp:504:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,313 504 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,313 | ^~~~~~~~~~~ 2021-07-29T15:18:37,313 Interface/PotentialInterface.cpp:505:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,313 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,313 | ^~~~~~ 2021-07-29T15:18:37,313 Interface/PotentialInterface.cpp:505:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,313 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,313 | ^~~~~~~ 2021-07-29T15:18:37,314 Interface/PotentialInterface.cpp:505:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,314 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,314 | ^~~~~~~~~~~~~~~ 2021-07-29T15:18:37,314 Interface/PotentialInterface.cpp:505:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,314 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,314 | ^~~~~~~~~ 2021-07-29T15:18:37,314 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MetalOxideInterface2Init(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,315 Interface/PotentialInterface.cpp:566:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,315 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,315 | ^~~ 2021-07-29T15:18:37,315 Interface/PotentialInterface.cpp:566:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,315 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,315 | ^~~ 2021-07-29T15:18:37,315 Interface/PotentialInterface.cpp:566:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,315 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,316 | ^~~ 2021-07-29T15:18:37,316 Interface/PotentialInterface.cpp:566:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,316 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,316 | ^~~~ 2021-07-29T15:18:37,316 Interface/PotentialInterface.cpp:566:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,316 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,316 | ^~~~ 2021-07-29T15:18:37,316 Interface/PotentialInterface.cpp:566:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,317 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", 2021-07-29T15:18:37,317 | ^~~~~~~~~ 2021-07-29T15:18:37,317 Interface/PotentialInterface.cpp:567:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,317 567 | "q", "kappa", 2021-07-29T15:18:37,317 | ^~~ 2021-07-29T15:18:37,317 Interface/PotentialInterface.cpp:567:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,317 567 | "q", "kappa", 2021-07-29T15:18:37,318 | ^~~~~~~ 2021-07-29T15:18:37,318 Interface/PotentialInterface.cpp:568:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,318 568 | "D", "alpha", "R0", 2021-07-29T15:18:37,318 | ^~~ 2021-07-29T15:18:37,318 Interface/PotentialInterface.cpp:568:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,318 568 | "D", "alpha", "R0", 2021-07-29T15:18:37,318 | ^~~~~~~ 2021-07-29T15:18:37,318 Interface/PotentialInterface.cpp:568:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,319 568 | "D", "alpha", "R0", 2021-07-29T15:18:37,319 | ^~~~ 2021-07-29T15:18:37,319 Interface/PotentialInterface.cpp:569:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,319 569 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,319 | ^~~ 2021-07-29T15:18:37,319 Interface/PotentialInterface.cpp:569:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,319 569 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,320 | ^~~ 2021-07-29T15:18:37,320 Interface/PotentialInterface.cpp:569:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,320 569 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,320 | ^~~~ 2021-07-29T15:18:37,320 Interface/PotentialInterface.cpp:569:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,320 569 | "a", "b", "f0", "oxide_cut", 2021-07-29T15:18:37,320 | ^~~~~~~~~~~ 2021-07-29T15:18:37,320 Interface/PotentialInterface.cpp:570:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,321 570 | "E", "rho0", "l0", 2021-07-29T15:18:37,321 | ^~~ 2021-07-29T15:18:37,321 Interface/PotentialInterface.cpp:570:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,321 570 | "E", "rho0", "l0", 2021-07-29T15:18:37,321 | ^~~~~~ 2021-07-29T15:18:37,321 Interface/PotentialInterface.cpp:570:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,321 570 | "E", "rho0", "l0", 2021-07-29T15:18:37,322 | ^~~~ 2021-07-29T15:18:37,322 Interface/PotentialInterface.cpp:571:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,322 571 | "B", "C", 2021-07-29T15:18:37,322 | ^~~ 2021-07-29T15:18:37,322 Interface/PotentialInterface.cpp:571:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,322 571 | "B", "C", 2021-07-29T15:18:37,322 | ^~~ 2021-07-29T15:18:37,323 Interface/PotentialInterface.cpp:572:4: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,323 572 | "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,323 | ^~~~~~~~~~~~~~~ 2021-07-29T15:18:37,323 Interface/PotentialInterface.cpp:572:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,323 572 | "interface_cut", "verbose", NULL}; 2021-07-29T15:18:37,323 | ^~~~~~~~~ 2021-07-29T15:18:37,323 Interface/PotentialInterface.cpp: In function ‘int PyAsap_MorseInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,323 Interface/PotentialInterface.cpp:648:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,324 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T15:18:37,324 | ^~~~~~~~~~ 2021-07-29T15:18:37,324 Interface/PotentialInterface.cpp:648:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,324 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T15:18:37,324 | ^~~~~~~~~ 2021-07-29T15:18:37,324 Interface/PotentialInterface.cpp:648:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,325 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T15:18:37,325 | ^~~~~~~ 2021-07-29T15:18:37,325 Interface/PotentialInterface.cpp:648:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,325 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", 2021-07-29T15:18:37,325 | ^~~~~~ 2021-07-29T15:18:37,325 Interface/PotentialInterface.cpp:649:7: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,325 649 | "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,325 | ^~~~~~ 2021-07-29T15:18:37,326 Interface/PotentialInterface.cpp:649:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,326 649 | "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,326 | ^~~~~~~~~~ 2021-07-29T15:18:37,326 Interface/PotentialInterface.cpp:649:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,326 649 | "rCut", "modified", "verbose", NULL}; 2021-07-29T15:18:37,326 | ^~~~~~~~~ 2021-07-29T15:18:37,326 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetPotentialEnergy(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,327 Interface/PotentialInterface.cpp:711:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,327 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T15:18:37,327 | ^~~~~~~ 2021-07-29T15:18:37,327 Interface/PotentialInterface.cpp:711:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,327 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; 2021-07-29T15:18:37,327 | ^~~~~~~~~~~~~~~~~~ 2021-07-29T15:18:37,333 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialGetExtra(AsapNS::PyAsap_PotentialObject*, PyObject*)’: 2021-07-29T15:18:37,334 Interface/PotentialInterface.cpp:863:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:18:37,334 863 | for (int i = 0; i < s1.size(); i++) 2021-07-29T15:18:37,334 | ~~^~~~~~~~~~~ 2021-07-29T15:18:37,340 Interface/PotentialInterface.cpp: In function ‘PyObject* PyAsap_PotentialCheckUpdateNbList(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:37,340 Interface/PotentialInterface.cpp:955:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:37,340 955 | static char* argnames[] = {"atoms", NULL}; 2021-07-29T15:18:37,340 | ^~~~~~~ 2021-07-29T15:18:40,052 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/PythonConversions.cpp -o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o 2021-07-29T15:18:41,546 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:41,546 from Interface/PythonConversions.h:30, 2021-07-29T15:18:41,546 from Interface/PythonConversions.cpp:24: 2021-07-29T15:18:41,546 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:41,547 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:41,547 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:41,547 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:41,547 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:41,547 | ^~ 2021-07-29T15:18:41,556 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:41,557 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:41,557 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:41,557 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:41,557 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:41,557 | ^~ 2021-07-29T15:18:41,565 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:41,565 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:41,566 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:41,566 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:41,566 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:41,566 | ^~ 2021-07-29T15:18:41,576 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:41,576 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:41,576 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:41,576 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:41,577 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:41,577 | ^~ 2021-07-29T15:18:41,586 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:41,586 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:41,587 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:41,587 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:41,587 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:41,587 | ^~ 2021-07-29T15:18:42,447 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/RDFInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o 2021-07-29T15:18:44,023 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:44,023 from Interface/RDFInterface.h:30, 2021-07-29T15:18:44,024 from Interface/RDFInterface.cpp:27: 2021-07-29T15:18:44,024 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:44,024 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:44,024 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:44,024 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:44,024 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:44,024 | ^~ 2021-07-29T15:18:44,034 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:44,034 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:44,034 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:44,034 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:44,035 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:44,035 | ^~ 2021-07-29T15:18:44,042 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:44,042 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:44,042 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:44,043 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:44,043 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:44,043 | ^~ 2021-07-29T15:18:44,053 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:44,053 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:44,053 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:44,054 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:44,054 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:44,054 | ^~ 2021-07-29T15:18:44,063 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:44,064 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:44,064 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:44,064 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:44,064 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:44,064 | ^~ 2021-07-29T15:18:45,995 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Interface/ToolsInterface.cpp -o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o 2021-07-29T15:18:47,534 In file included from Basics/AsapPython.h:44, 2021-07-29T15:18:47,534 from Interface/ToolsInterface.cpp:27: 2021-07-29T15:18:47,534 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:18:47,534 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:47,535 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:18:47,535 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:47,535 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:47,535 | ^~ 2021-07-29T15:18:47,544 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:18:47,545 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:47,545 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:18:47,545 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:47,545 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:47,545 | ^~ 2021-07-29T15:18:47,553 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:18:47,553 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:47,553 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:18:47,554 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:47,554 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:47,554 | ^~ 2021-07-29T15:18:47,564 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:18:47,564 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:47,564 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:18:47,564 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:47,565 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:47,565 | ^~ 2021-07-29T15:18:47,574 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:18:47,574 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:18:47,575 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:18:47,575 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:18:47,575 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:18:47,575 | ^~ 2021-07-29T15:18:47,772 Interface/ToolsInterface.cpp: In function ‘int AsapNS::PyAsap_FullCNAInit(AsapNS::PyAsap_FullCNAObject*, PyObject*, PyObject*)’: 2021-07-29T15:18:47,772 Interface/ToolsInterface.cpp:92:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:47,773 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T15:18:47,773 | ^~~~~~~ 2021-07-29T15:18:47,773 Interface/ToolsInterface.cpp:92:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:18:47,773 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; 2021-07-29T15:18:47,773 | ^~~~~~~~ 2021-07-29T15:18:48,511 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/alloy_types.cpp -o build/temp.linux-armv7l-3.9/PTM/alloy_types.o 2021-07-29T15:18:50,162 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/canonical.cpp -o build/temp.linux-armv7l-3.9/PTM/canonical.o 2021-07-29T15:18:52,016 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/convex_hull_incremental.cpp -o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o 2021-07-29T15:18:54,051 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/deformation_gradient.cpp -o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o 2021-07-29T15:18:55,629 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/graph_data.cpp -o build/temp.linux-armv7l-3.9/PTM/graph_data.o 2021-07-29T15:18:57,293 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/index_ptm.cpp -o build/temp.linux-armv7l-3.9/PTM/index_ptm.o 2021-07-29T15:18:59,391 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/initialize_data.cpp -o build/temp.linux-armv7l-3.9/PTM/initialize_data.o 2021-07-29T15:19:01,137 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/neighbour_ordering.cpp -o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o 2021-07-29T15:19:02,612 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/normalize_vertices.cpp -o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o 2021-07-29T15:19:02,949 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/polar.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o 2021-07-29T15:19:03,847 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/qcprot/quat.cpp -o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o 2021-07-29T15:19:04,397 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c PTM/voronoi/cell.cpp -o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o 2021-07-29T15:19:07,850 In file included from /usr/include/c++/10/vector:72, 2021-07-29T15:19:07,851 from PTM/voronoi/cell.hpp:15, 2021-07-29T15:19:07,851 from PTM/voronoi/cell.cpp:16: 2021-07-29T15:19:07,851 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T15:19:07,851 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T15:19:07,851 426 | vector<_Tp, _Alloc>:: 2021-07-29T15:19:07,852 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:07,912 /usr/include/c++/10/bits/vector.tcc: In member function ‘void voro::voronoicell_base::face_areas(std::vector&)’: 2021-07-29T15:19:07,912 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:19:07,913 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T15:19:07,913 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:08,177 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/AsapMPI.cpp -o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o 2021-07-29T15:19:10,043 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:10,044 from Parallel/AsapMPI.cpp:27: 2021-07-29T15:19:10,044 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllToAll(std::vector&, std::vector&, int)’: 2021-07-29T15:19:10,044 Parallel/AsapMPI.cpp:313:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:10,044 313 | ASSERT(sendbuf.size() == size * nProcessors); 2021-07-29T15:19:10,044 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:10,044 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:10,045 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:10,045 | ^~ 2021-07-29T15:19:10,045 Parallel/AsapMPI.cpp: In member function ‘void AsapNS::Communicator::AllGather(std::vector&, std::vector&, int)’: 2021-07-29T15:19:10,045 Parallel/AsapMPI.cpp:329:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:10,045 329 | ASSERT(sendbuf.size() == size); 2021-07-29T15:19:10,045 | ~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:19:10,045 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:10,046 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:10,046 | ^~ 2021-07-29T15:19:11,212 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelAtoms.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o 2021-07-29T15:19:13,126 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:13,126 from Parallel/ParallelAtoms.h:28, 2021-07-29T15:19:13,126 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T15:19:13,126 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::Migrate(bool)’: 2021-07-29T15:19:13,127 Parallel/ParallelAtoms.cpp:266:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:13,127 266 | (sendlist->size() < nProcessors)); 2021-07-29T15:19:13,127 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2021-07-29T15:19:13,127 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:13,127 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:13,127 | ^~ 2021-07-29T15:19:13,162 Parallel/ParallelAtoms.cpp:343:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,162 343 | for (int j = 0; j < arrays.size(); j++) 2021-07-29T15:19:13,162 | ~~^~~~~~~~~~~~~~~ 2021-07-29T15:19:13,163 Parallel/ParallelAtoms.cpp:363:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,163 363 | for (int j = 0; j < new_arrays.size(); j++) 2021-07-29T15:19:13,164 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,164 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:13,164 from Parallel/ParallelAtoms.h:28, 2021-07-29T15:19:13,164 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T15:19:13,164 Parallel/ParallelAtoms.cpp:370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,164 370 | ASSERT(b - b0 == receiveBuffer.size()); 2021-07-29T15:19:13,165 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,165 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:13,165 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:13,165 | ^~ 2021-07-29T15:19:13,210 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::UpdateGhostData()’: 2021-07-29T15:19:13,210 Parallel/ParallelAtoms.cpp:634:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,210 634 | for (int i = 0; i < array_names.size(); i++) 2021-07-29T15:19:13,211 | ~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,212 Parallel/ParallelAtoms.cpp:655:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,213 655 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T15:19:13,213 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,213 Parallel/ParallelAtoms.cpp:662:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,213 662 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T15:19:13,213 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,220 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:13,220 from Parallel/ParallelAtoms.h:28, 2021-07-29T15:19:13,220 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T15:19:13,221 Parallel/ParallelAtoms.cpp:674:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,221 674 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); 2021-07-29T15:19:13,221 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,221 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:13,221 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:13,221 | ^~ 2021-07-29T15:19:13,222 Parallel/ParallelAtoms.cpp:684:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,222 684 | for (int arr = 0; arr < array_names.size(); arr++) 2021-07-29T15:19:13,222 | ~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,227 Parallel/ParallelAtoms.cpp: In member function ‘virtual void AsapNS::ParallelAtoms::CommunicateData(double*, int)’: 2021-07-29T15:19:13,228 Parallel/ParallelAtoms.cpp:748:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,228 748 | for (int dp = 0; dp < sendlist->size(); dp++) 2021-07-29T15:19:13,228 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,264 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:13,265 from Parallel/ParallelAtoms.h:28, 2021-07-29T15:19:13,265 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T15:19:13,265 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T15:19:13,265 Parallel/ParallelAtoms.cpp:1139:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:13,265 1139 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T15:19:13,266 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,266 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:13,266 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:13,266 | ^~ 2021-07-29T15:19:13,266 Parallel/ParallelAtoms.cpp:1145:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,266 1145 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T15:19:13,266 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,277 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:13,277 from Parallel/ParallelAtoms.h:28, 2021-07-29T15:19:13,278 from Parallel/ParallelAtoms.cpp:24: 2021-07-29T15:19:13,278 Parallel/ParallelAtoms.cpp: In member function ‘void AsapNS::ParallelAtoms::CollectFromGhosts(std::vector&)’: 2021-07-29T15:19:13,278 Parallel/ParallelAtoms.cpp:1172:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:13,278 1172 | ASSERT(data.size() == nAtoms + nGhosts); 2021-07-29T15:19:13,278 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:13,278 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:13,279 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:13,279 | ^~ 2021-07-29T15:19:13,279 Parallel/ParallelAtoms.cpp:1178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:13,279 1178 | for (int dp = 0; dp < recvlist->size(); dp++) 2021-07-29T15:19:13,279 | ~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:18,679 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/ParallelPotential.cpp -o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o 2021-07-29T15:19:22,223 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Parallel/RegularGridDecomposition.cpp -o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o 2021-07-29T15:19:26,961 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/AsapParallel.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o 2021-07-29T15:19:29,187 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelAtomsInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o 2021-07-29T15:19:30,743 ParallelInterface/ParallelAtomsInterface.cpp: In function ‘PyObject* AsapNS::PyAsap_DistributeAtoms(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:30,744 ParallelInterface/ParallelAtomsInterface.cpp:39:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:30,744 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T15:19:30,744 | ^~~~~~~ 2021-07-29T15:19:30,744 ParallelInterface/ParallelAtomsInterface.cpp:39:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:30,744 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; 2021-07-29T15:19:30,745 | ^~~~~~~~~ 2021-07-29T15:19:31,108 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelNeighborListInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o 2021-07-29T15:19:32,608 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:32,608 from ParallelInterface/ParallelNeighborListInterface.cpp:2: 2021-07-29T15:19:32,608 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorDouble(const std::vector&)’: 2021-07-29T15:19:32,608 Interface/PythonConversions.h:48:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:19:32,609 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); 2021-07-29T15:19:32,609 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:32,609 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:32,609 | ^~ 2021-07-29T15:19:32,618 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorInt(const std::vector&)’: 2021-07-29T15:19:32,619 Interface/PythonConversions.h:59:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:19:32,619 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); 2021-07-29T15:19:32,619 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:32,619 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:32,619 | ^~ 2021-07-29T15:19:32,627 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorChar(const std::vector&)’: 2021-07-29T15:19:32,627 Interface/PythonConversions.h:71:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:19:32,628 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); 2021-07-29T15:19:32,628 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:32,628 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:32,628 | ^~ 2021-07-29T15:19:32,638 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorVec(const std::vector&)’: 2021-07-29T15:19:32,638 Interface/PythonConversions.h:84:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:19:32,638 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); 2021-07-29T15:19:32,639 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:32,639 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:32,639 | ^~ 2021-07-29T15:19:32,648 Interface/PythonConversions.h: In function ‘PyObject* AsapNS::PyAsap_ArrayFromVectorSymTensor(const std::vector&)’: 2021-07-29T15:19:32,649 Interface/PythonConversions.h:97:48: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:19:32,649 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); 2021-07-29T15:19:32,649 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:32,649 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:32,649 | ^~ 2021-07-29T15:19:32,841 ParallelInterface/ParallelNeighborListInterface.cpp: In function ‘PyObject* PyAsap_NewNeighborCellLocator_Parallel(PyObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:32,841 ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:32,841 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:19:32,841 | ^~~~~~ 2021-07-29T15:19:32,842 ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:32,842 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:19:32,842 | ^~~~~~~ 2021-07-29T15:19:32,842 ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:32,842 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; 2021-07-29T15:19:32,842 | ^~~~~~~~~~~~~ 2021-07-29T15:19:32,995 In file included from ParallelInterface/ParallelNeighborListInterface.cpp:7: 2021-07-29T15:19:32,995 Interface/Templates.h: At global scope: 2021-07-29T15:19:32,995 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:19:32,995 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:19:32,996 | ^~~~~~~~~~~~~~ 2021-07-29T15:19:33,231 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/ParallelPotentialInterface.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o 2021-07-29T15:19:34,672 ParallelInterface/ParallelPotentialInterface.cpp: In function ‘int PyAsap_ParPotInit(AsapNS::PyAsap_PotentialObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:34,672 ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:34,672 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T15:19:34,673 | ^~~~~~~~~~~ 2021-07-29T15:19:34,673 ParallelInterface/ParallelPotentialInterface.cpp:48:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:34,673 48 | static char *kwlist[] = {"potential", "verbose", NULL}; 2021-07-29T15:19:34,673 | ^~~~~~~~~ 2021-07-29T15:19:35,075 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c ParallelInterface/mpimodule.cpp -o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o 2021-07-29T15:19:36,872 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_receive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:36,873 ParallelInterface/mpimodule.cpp:194:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,873 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T15:19:36,873 | ^~~ 2021-07-29T15:19:36,873 ParallelInterface/mpimodule.cpp:194:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,873 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T15:19:36,873 | ^~~~~ 2021-07-29T15:19:36,874 ParallelInterface/mpimodule.cpp:194:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,874 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T15:19:36,874 | ^~~~~ 2021-07-29T15:19:36,874 ParallelInterface/mpimodule.cpp:194:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,874 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; 2021-07-29T15:19:36,874 | ^~~~~~~ 2021-07-29T15:19:36,877 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_probe(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:36,877 ParallelInterface/mpimodule.cpp:242:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,878 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T15:19:36,878 | ^~~~~ 2021-07-29T15:19:36,878 ParallelInterface/mpimodule.cpp:242:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,878 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T15:19:36,878 | ^~~~~ 2021-07-29T15:19:36,878 ParallelInterface/mpimodule.cpp:242:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,879 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; 2021-07-29T15:19:36,879 | ^~~~~~~ 2021-07-29T15:19:36,880 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_send(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:36,881 ParallelInterface/mpimodule.cpp:290:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,881 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T15:19:36,881 | ^~~ 2021-07-29T15:19:36,881 ParallelInterface/mpimodule.cpp:290:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,881 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T15:19:36,882 | ^~~~~~ 2021-07-29T15:19:36,882 ParallelInterface/mpimodule.cpp:290:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,882 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T15:19:36,882 | ^~~~~ 2021-07-29T15:19:36,882 ParallelInterface/mpimodule.cpp:290:48: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,882 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; 2021-07-29T15:19:36,883 | ^~~~~~~ 2021-07-29T15:19:36,885 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_sendreceive(AsapNS::MPIObject*, PyObject*, PyObject*)’: 2021-07-29T15:19:36,885 ParallelInterface/mpimodule.cpp:332:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,886 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,886 | ^~~ 2021-07-29T15:19:36,886 ParallelInterface/mpimodule.cpp:332:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,886 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,886 | ^~~~~~ 2021-07-29T15:19:36,886 ParallelInterface/mpimodule.cpp:332:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,887 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,887 | ^~~ 2021-07-29T15:19:36,887 ParallelInterface/mpimodule.cpp:332:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,887 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,887 | ^~~~~ 2021-07-29T15:19:36,887 ParallelInterface/mpimodule.cpp:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,888 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,888 | ^~~~~~~~~ 2021-07-29T15:19:36,888 ParallelInterface/mpimodule.cpp:332:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,888 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", 2021-07-29T15:19:36,888 | ^~~~~~~~~ 2021-07-29T15:19:36,899 ParallelInterface/mpimodule.cpp: In function ‘PyObject* mpi_reduce(AsapNS::MPIObject*, PyObject*, PyObject*, MPI_Op, int)’: 2021-07-29T15:19:36,899 ParallelInterface/mpimodule.cpp:568:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,899 568 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T15:19:36,899 | ^~~ 2021-07-29T15:19:36,900 ParallelInterface/mpimodule.cpp:568:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021-07-29T15:19:36,900 568 | static char *kwlist[] = {"a", "root", NULL}; 2021-07-29T15:19:36,900 | ^~~~~~ 2021-07-29T15:19:38,160 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT.o 2021-07-29T15:19:40,342 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::SetAtoms(PyObject*, AsapNS::Atoms*)’: 2021-07-29T15:19:40,342 Potentials/EMT.cpp:193:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,342 193 | for (int i = 0; i < parameters.size(); i++) 2021-07-29T15:19:40,342 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:40,356 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::Allocate()’: 2021-07-29T15:19:40,357 Potentials/EMT.cpp:242:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,357 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T15:19:40,357 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-29T15:19:40,357 Potentials/EMT.cpp:242:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,358 242 | if (nSize != force.size() || nAtoms != Eas.size()) 2021-07-29T15:19:40,358 | ~~~~~~~^~~~~~~~~~~~~ 2021-07-29T15:19:40,358 Potentials/EMT.cpp:251:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,358 251 | if (force.capacity() < nSize) 2021-07-29T15:19:40,358 | ~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:19:40,359 Potentials/EMT.cpp:262:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,360 262 | if (Eas.capacity() < nAtoms) 2021-07-29T15:19:40,360 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:19:40,362 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::AllocateStress()’: 2021-07-29T15:19:40,362 Potentials/EMT.cpp:302:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,362 302 | if (ghostatoms && (virials.capacity() < nSize)) 2021-07-29T15:19:40,363 | ~~~~~~~~~~~~~~~~~~~^~~~~~~ 2021-07-29T15:19:40,365 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:40,366 from Potentials/EMT.h:34, 2021-07-29T15:19:40,366 from Potentials/EMT.cpp:34: 2021-07-29T15:19:40,366 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::InitParameters()’: 2021-07-29T15:19:40,366 Potentials/EMT.cpp:324:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,366 324 | ASSERT(nelements == elements_set.size()); 2021-07-29T15:19:40,366 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:40,366 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,366 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,366 | ^~ 2021-07-29T15:19:40,384 Potentials/EMT.cpp: In member function ‘virtual const std::vector& AsapNS::EMT::GetPotentialEnergies(PyObject*)’: 2021-07-29T15:19:40,384 Potentials/EMT.cpp:538:22: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,385 538 | ASSERT(Epot.size() == nAtoms); 2021-07-29T15:19:40,385 | ~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:19:40,385 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,385 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,385 | ^~ 2021-07-29T15:19:40,422 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T15:19:40,422 Potentials/EMT.cpp:1271:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,422 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T15:19:40,422 | ~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:19:40,422 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,422 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,422 | ^~ 2021-07-29T15:19:40,423 Potentials/EMT.cpp:1271:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,423 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && 2021-07-29T15:19:40,423 | ~~~~~~~^~~~~~~~~~~~ 2021-07-29T15:19:40,423 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,423 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,423 | ^~ 2021-07-29T15:19:40,424 Potentials/EMT.cpp:1272:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:40,424 1272 | nSize == dEds.size()); 2021-07-29T15:19:40,424 | ~~~~~~^~~~~~~~~~~~~~ 2021-07-29T15:19:40,424 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,424 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,424 | ^~ 2021-07-29T15:19:40,437 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergies()’: 2021-07-29T15:19:40,437 Potentials/EMT.cpp:1437:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,437 1437 | ASSERT(virials.size() == nSize); 2021-07-29T15:19:40,438 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:19:40,438 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,438 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,438 | ^~ 2021-07-29T15:19:40,447 Potentials/EMT.cpp: In member function ‘virtual void AsapNS::EMT::CalculateForcesAfterEnergiesSingle()’: 2021-07-29T15:19:40,448 Potentials/EMT.cpp:1556:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,448 1556 | ASSERT(this->force.size() >= nSize); 2021-07-29T15:19:40,448 | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:19:40,448 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,448 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,448 | ^~ 2021-07-29T15:19:40,449 Potentials/EMT.cpp:1559:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:19:40,449 1559 | ASSERT(virials.size() == nSize); 2021-07-29T15:19:40,449 | ~~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:19:40,449 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:40,450 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:40,450 | ^~ 2021-07-29T15:19:41,012 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:19:41,012 from Potentials/EMT.cpp:39: 2021-07-29T15:19:41,012 Interface/Templates.h: At global scope: 2021-07-29T15:19:41,012 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:19:41,012 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:19:41,013 | ^~~~~~~~~~~~~~ 2021-07-29T15:19:47,120 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMT2013.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o 2021-07-29T15:19:49,056 In file included from Basics/AsapPython.h:44, 2021-07-29T15:19:49,057 from Potentials/EMT.h:34, 2021-07-29T15:19:49,057 from Potentials/EMT2013.h:13, 2021-07-29T15:19:49,057 from Potentials/EMT2013.cpp:8: 2021-07-29T15:19:49,057 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::InitParameters()’: 2021-07-29T15:19:49,057 Potentials/EMT2013.cpp:105:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::set::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:49,057 105 | ASSERT(nelements == elements_set.size()); 2021-07-29T15:19:49,057 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:49,057 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:49,058 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:49,058 | ^~ 2021-07-29T15:19:49,093 Potentials/EMT2013.cpp: In member function ‘virtual void AsapNS::EMT2013::CalculateEnergiesAfterSigmas(bool)’: 2021-07-29T15:19:49,093 Potentials/EMT2013.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:49,093 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T15:19:49,093 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:49,094 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:49,094 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:49,094 | ^~ 2021-07-29T15:19:49,094 Potentials/EMT2013.cpp:568:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:49,094 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && 2021-07-29T15:19:49,094 | ~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:49,094 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:49,095 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:49,095 | ^~ 2021-07-29T15:19:49,095 Potentials/EMT2013.cpp:569:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:19:49,095 569 | nSize == this->dEds.size()); 2021-07-29T15:19:49,095 | ~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:19:49,095 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:19:49,095 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:19:49,095 | ^~ 2021-07-29T15:19:49,474 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:19:49,474 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:19:49,474 from Potentials/EMT2013.cpp:13: 2021-07-29T15:19:49,475 Interface/Templates.h: At global scope: 2021-07-29T15:19:49,475 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:19:49,475 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:19:49,475 | ^~~~~~~~~~~~~~ 2021-07-29T15:19:51,816 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o 2021-07-29T15:19:54,289 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o 2021-07-29T15:19:56,552 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o 2021-07-29T15:19:58,517 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/LennardJones.cpp -o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o 2021-07-29T15:20:00,376 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetVirials(PyObject*)’: 2021-07-29T15:20:00,376 Potentials/LennardJones.cpp:389:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:20:00,376 389 | if (nAtoms != virials.size()) 2021-07-29T15:20:00,376 | ~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:20:00,383 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:00,383 from Potentials/LennardJones.cpp:43: 2021-07-29T15:20:00,383 Potentials/LennardJones.cpp: In member function ‘virtual const std::vector& AsapNS::LennardJones::GetForces(PyObject*)’: 2021-07-29T15:20:00,384 Potentials/LennardJones.cpp:499:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:00,384 499 | ASSERT(forces.size() == nSize); 2021-07-29T15:20:00,384 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:20:00,384 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:00,384 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:00,384 | ^~ 2021-07-29T15:20:00,389 Potentials/LennardJones.cpp: In member function ‘double AsapNS::LennardJones::CalculateEnergyAndEnergies()’: 2021-07-29T15:20:00,389 Potentials/LennardJones.cpp:595:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:00,389 595 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T15:20:00,389 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:20:00,389 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:00,389 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:00,390 | ^~ 2021-07-29T15:20:00,675 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:00,675 from Basics/NeighborList.h:37, 2021-07-29T15:20:00,675 from Potentials/LennardJones.cpp:46: 2021-07-29T15:20:00,675 Interface/Templates.h: At global scope: 2021-07-29T15:20:00,676 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:00,676 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:00,676 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:03,100 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o 2021-07-29T15:20:04,971 Potentials/MetalOxideInterface.cpp: In member function ‘bool AsapNS::MetalOxideInterface::CheckNeighborLists()’: 2021-07-29T15:20:04,971 Potentials/MetalOxideInterface.cpp:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-29T15:20:04,971 220 | if (counters.nblist == atoms->GetPositionsCounter() && neighborList != NULL && !neighborList->IsInvalid()) 2021-07-29T15:20:04,971 | ^~ 2021-07-29T15:20:04,971 Potentials/MetalOxideInterface.cpp:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-29T15:20:04,971 223 | bool update = false; 2021-07-29T15:20:04,972 | ^~~~ 2021-07-29T15:20:04,978 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:04,979 from Potentials/MetalOxideInterface.cpp:29: 2021-07-29T15:20:04,979 Potentials/MetalOxideInterface.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface::GetForces(PyObject*)’: 2021-07-29T15:20:04,979 Potentials/MetalOxideInterface.cpp:328:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:04,979 328 | ASSERT(forces.size() == nSize); 2021-07-29T15:20:04,979 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:20:04,979 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:04,979 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:04,979 | ^~ 2021-07-29T15:20:04,997 Potentials/MetalOxideInterface.cpp: In member function ‘double AsapNS::MetalOxideInterface::CalculateEnergyAndEnergies()’: 2021-07-29T15:20:04,997 Potentials/MetalOxideInterface.cpp:583:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:04,997 583 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T15:20:04,997 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:20:04,997 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:04,998 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:04,998 | ^~ 2021-07-29T15:20:05,340 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:05,340 from Basics/NeighborList.h:37, 2021-07-29T15:20:05,340 from Potentials/MetalOxideInterface.cpp:32: 2021-07-29T15:20:05,340 Interface/Templates.h: At global scope: 2021-07-29T15:20:05,340 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:05,340 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:05,340 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:08,582 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MetalOxideInterface2.cpp -o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o 2021-07-29T15:20:10,449 Potentials/MetalOxideInterface2.cpp: In member function ‘bool AsapNS::MetalOxideInterface2::CheckNeighborLists()’: 2021-07-29T15:20:10,450 Potentials/MetalOxideInterface2.cpp:235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2021-07-29T15:20:10,450 235 | if (counters.nblist == atoms->GetPositionsCounter() && neighborList != NULL && !neighborList->IsInvalid()) 2021-07-29T15:20:10,450 | ^~ 2021-07-29T15:20:10,450 Potentials/MetalOxideInterface2.cpp:238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2021-07-29T15:20:10,450 238 | bool update = false; 2021-07-29T15:20:10,451 | ^~~~ 2021-07-29T15:20:10,456 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:10,457 from Potentials/MetalOxideInterface2.cpp:43: 2021-07-29T15:20:10,457 Potentials/MetalOxideInterface2.cpp: In member function ‘virtual const std::vector& AsapNS::MetalOxideInterface2::GetForces(PyObject*)’: 2021-07-29T15:20:10,457 Potentials/MetalOxideInterface2.cpp:343:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:10,457 343 | ASSERT(forces.size() == nSize); 2021-07-29T15:20:10,457 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:20:10,457 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:10,457 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:10,458 | ^~ 2021-07-29T15:20:10,472 Potentials/MetalOxideInterface2.cpp: In member function ‘double AsapNS::MetalOxideInterface2::CalculateEnergyAndEnergies()’: 2021-07-29T15:20:10,472 Potentials/MetalOxideInterface2.cpp:565:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:10,472 565 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T15:20:10,473 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:20:10,473 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:10,473 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:10,473 | ^~ 2021-07-29T15:20:10,837 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:10,838 from Basics/NeighborList.h:37, 2021-07-29T15:20:10,838 from Potentials/MetalOxideInterface2.cpp:46: 2021-07-29T15:20:10,838 Interface/Templates.h: At global scope: 2021-07-29T15:20:10,838 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:10,838 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:10,838 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:14,249 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/MonteCarloEMT.cpp -o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o 2021-07-29T15:20:16,421 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:16,421 from Basics/NeighborList.h:37, 2021-07-29T15:20:16,422 from Potentials/MonteCarloEMT.cpp:25: 2021-07-29T15:20:16,422 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:16,422 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:16,422 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:18,114 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Morse.cpp -o build/temp.linux-armv7l-3.9/Potentials/Morse.o 2021-07-29T15:20:19,969 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:19,969 from Potentials/Morse.cpp:43: 2021-07-29T15:20:19,970 Potentials/Morse.cpp: In member function ‘double AsapNS::Morse::CalculateEnergyAndEnergies()’: 2021-07-29T15:20:19,970 Potentials/Morse.cpp:484:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:19,970 484 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T15:20:19,970 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:20:19,970 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:19,970 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:19,970 | ^~ 2021-07-29T15:20:20,253 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:20,254 from Basics/NeighborList.h:37, 2021-07-29T15:20:20,254 from Potentials/Morse.cpp:46: 2021-07-29T15:20:20,254 Interface/Templates.h: At global scope: 2021-07-29T15:20:20,254 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:20,254 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:20,254 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:21,961 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T15:20:21,962 from Potentials/Morse.cpp:54: 2021-07-29T15:20:21,962 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T15:20:21,962 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:21,962 79 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, 2021-07-29T15:20:21,962 | ^~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:21,962 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:21,963 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:21,963 /usr/include/c++/10/bits/stl_algo.h:79:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:21,984 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: 2021-07-29T15:20:21,984 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:21,984 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-29T15:20:21,984 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,000 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T15:20:22,000 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,000 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-29T15:20:22,000 | ^~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,001 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,029 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-29T15:20:22,030 from /usr/include/c++/10/algorithm:62, 2021-07-29T15:20:22,030 from Potentials/Morse.cpp:54: 2021-07-29T15:20:22,030 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T15:20:22,030 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,030 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-29T15:20:22,030 | ^~~~~~~~~~~~~ 2021-07-29T15:20:22,070 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T15:20:22,070 from Potentials/Morse.cpp:54: 2021-07-29T15:20:22,071 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T15:20:22,071 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,071 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-29T15:20:22,071 | ^~~~~~~~~~~~~ 2021-07-29T15:20:22,071 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,071 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,071 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,105 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: 2021-07-29T15:20:22,105 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,105 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-29T15:20:22,105 | ^~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,105 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,105 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,106 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,106 1924 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, 2021-07-29T15:20:22,106 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,106 1925 | __comp); 2021-07-29T15:20:22,106 | ~~~~~~~ 2021-07-29T15:20:22,106 /usr/include/c++/10/bits/stl_algo.h:1924:34: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,106 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,106 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-29T15:20:22,107 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,107 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,107 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-29T15:20:22,107 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,145 /usr/include/c++/10/bits/stl_algo.h: In member function ‘double AsapNS::Morse::Add(std::vector&)’: 2021-07-29T15:20:22,146 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,146 1974 | std::__introsort_loop(__first, __last, 2021-07-29T15:20:22,146 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,146 1975 | std::__lg(__last - __first) * 2, 2021-07-29T15:20:22,146 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,146 1976 | __comp); 2021-07-29T15:20:22,146 | ~~~~~~~ 2021-07-29T15:20:22,147 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,147 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-29T15:20:22,147 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,147 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T15:20:22,147 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-29T15:20:22,147 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:22,537 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/Potential.cpp -o build/temp.linux-armv7l-3.9/Potentials/Potential.o 2021-07-29T15:20:24,216 Potentials/Potential.cpp: In member function ‘virtual AsapNS::SymTensor AsapNS::Potential::GetVirial(PyObject*)’: 2021-07-29T15:20:24,216 Potentials/Potential.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:20:24,216 52 | for (int i = 0; i < virials.size(); i++) 2021-07-29T15:20:24,216 | ~~^~~~~~~~~~~~~~~~ 2021-07-29T15:20:24,678 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RGL.cpp -o build/temp.linux-armv7l-3.9/Potentials/RGL.o 2021-07-29T15:20:26,664 Potentials/RGL.cpp: In member function ‘void AsapNS::RGL::Allocate()’: 2021-07-29T15:20:26,664 Potentials/RGL.cpp:127:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:20:26,665 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T15:20:26,665 | ~~~~~~^~~~~~~~~~~~~~~~ 2021-07-29T15:20:26,665 Potentials/RGL.cpp:127:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-29T15:20:26,665 127 | if (nSize != forces.size() || nAtoms != epot.size()) { 2021-07-29T15:20:26,665 | ~~~~~~~^~~~~~~~~~~~~~ 2021-07-29T15:20:26,991 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:26,992 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:20:26,992 from Potentials/RGL.cpp:5: 2021-07-29T15:20:26,992 Interface/Templates.h: At global scope: 2021-07-29T15:20:26,992 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:26,992 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:26,992 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:29,409 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o 2021-07-29T15:20:31,318 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:31,318 from Potentials/RahmanStillingerLemberg.cpp:43: 2021-07-29T15:20:31,319 Potentials/RahmanStillingerLemberg.cpp: In member function ‘virtual const std::vector& AsapNS::RahmanStillingerLemberg::GetForces(PyObject*)’: 2021-07-29T15:20:31,319 Potentials/RahmanStillingerLemberg.cpp:368:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:31,319 368 | ASSERT(forces.size() == nSize); 2021-07-29T15:20:31,319 | ~~~~~~~~~~~~~~^~~~~~~~ 2021-07-29T15:20:31,319 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:31,319 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:31,319 | ^~ 2021-07-29T15:20:31,328 Potentials/RahmanStillingerLemberg.cpp: In member function ‘double AsapNS::RahmanStillingerLemberg::CalculateEnergyAndEnergies()’: 2021-07-29T15:20:31,328 Potentials/RahmanStillingerLemberg.cpp:465:34: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:31,328 465 | ASSERT(atomicEnergies.size() == nAtoms); 2021-07-29T15:20:31,328 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2021-07-29T15:20:31,328 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:31,329 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:31,329 | ^~ 2021-07-29T15:20:31,615 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:31,615 from Basics/NeighborList.h:37, 2021-07-29T15:20:31,616 from Potentials/RahmanStillingerLemberg.cpp:46: 2021-07-29T15:20:31,616 Interface/Templates.h: At global scope: 2021-07-29T15:20:31,616 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:31,616 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:31,616 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:34,210 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CNA.cpp -o build/temp.linux-armv7l-3.9/Tools/CNA.o 2021-07-29T15:20:35,894 Tools/CNA.cpp: In function ‘void AsapNS::CNA(PyObject*, double, std::vector&)’: 2021-07-29T15:20:35,894 Tools/CNA.cpp:60:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:20:35,894 60 | for (unsigned int a2 = 0; a2 < nTotal; a2++) 2021-07-29T15:20:35,895 | ~~~^~~~~~~~ 2021-07-29T15:20:35,898 Tools/CNA.cpp:70:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-29T15:20:35,898 70 | if (a1 < a2) 2021-07-29T15:20:35,898 | ~~~^~~~ 2021-07-29T15:20:35,899 Tools/CNA.cpp:90:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-29T15:20:35,899 90 | for (unsigned int j1 = 0; j1 < j2; j1++) 2021-07-29T15:20:35,899 | ~~~^~~~ 2021-07-29T15:20:36,129 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:36,129 from Basics/NeighborList.h:37, 2021-07-29T15:20:36,129 from Tools/CNA.cpp:27: 2021-07-29T15:20:36,129 Interface/Templates.h: At global scope: 2021-07-29T15:20:36,130 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:36,130 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:36,130 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:36,979 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/CoordinationNumbers.cpp -o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o 2021-07-29T15:20:38,685 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:38,685 from Tools/CoordinationNumbers.cpp:27: 2021-07-29T15:20:38,685 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:38,685 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:38,685 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:39,282 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/FullCNA.cpp -o build/temp.linux-armv7l-3.9/Tools/FullCNA.o 2021-07-29T15:20:42,022 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:42,022 from Basics/NeighborList.h:37, 2021-07-29T15:20:42,022 from Tools/FullCNA.cpp:27: 2021-07-29T15:20:42,023 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:42,023 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:42,023 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:43,842 In file included from /usr/include/c++/10/map:60, 2021-07-29T15:20:43,842 from Tools/FullCNA.h:35, 2021-07-29T15:20:43,842 from Tools/FullCNA.cpp:24: 2021-07-29T15:20:43,842 /usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T15:20:43,842 /usr/include/c++/10/bits/stl_tree.h:2193:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T15:20:43,842 2193 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T15:20:43,842 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,208 /usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple&>, std::tuple<>}; _Key = std::pair; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: 2021-07-29T15:20:44,208 /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T15:20:44,208 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2021-07-29T15:20:44,208 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,254 In file included from /usr/include/c++/10/map:61, 2021-07-29T15:20:44,255 from Tools/FullCNA.h:35, 2021-07-29T15:20:44,255 from Tools/FullCNA.cpp:24: 2021-07-29T15:20:44,255 /usr/include/c++/10/bits/stl_map.h: In member function ‘void AsapNS::FullCNA::SetMultipleCutoffs(std::map, double>&)’: 2021-07-29T15:20:44,255 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T15:20:44,255 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T15:20:44,255 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,255 502 | std::tuple(__k), 2021-07-29T15:20:44,256 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,256 503 | std::tuple<>()); 2021-07-29T15:20:44,256 | ~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,257 /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2021-07-29T15:20:44,257 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2021-07-29T15:20:44,257 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,257 502 | std::tuple(__k), 2021-07-29T15:20:44,257 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T15:20:44,257 503 | std::tuple<>()); 2021-07-29T15:20:44,257 | ~~~~~~~~~~~~~~~ 2021-07-29T15:20:45,168 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/GetNeighborList.cpp -o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o 2021-07-29T15:20:47,045 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:47,045 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:20:47,045 from Tools/GetNeighborList.cpp:28: 2021-07-29T15:20:47,045 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:47,046 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:47,046 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:47,512 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/RawRadialDistribution.cpp -o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o 2021-07-29T15:20:49,235 In file included from Basics/AsapPython.h:44, 2021-07-29T15:20:49,235 from Tools/RawRadialDistribution.cpp:29: 2021-07-29T15:20:49,235 Tools/RawRadialDistribution.cpp: In function ‘void AsapNS::RawRadialDistribution(PyObject*, int, const int*, double, int, AsapNS::RDFtype&, AsapNS::RDFcountType&, long int*)’: 2021-07-29T15:20:49,235 Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integer expressions of different signedness: ‘std::vector, long int*> >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:49,236 55 | ASSERT(result.size() == nGroups); 2021-07-29T15:20:49,236 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T15:20:49,236 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:49,236 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:49,236 | ^~ 2021-07-29T15:20:49,244 Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-29T15:20:49,245 56 | ASSERT(counts.size() == nGroups); 2021-07-29T15:20:49,245 | ~~~~~~~~~~~~~~^~~~~~~~~~ 2021-07-29T15:20:49,245 Basics/Exception.h:157:26: note: in definition of macro ‘ASSERT’ 2021-07-29T15:20:49,245 157 | #define ASSERT(EX) if (!(EX)) \ 2021-07-29T15:20:49,245 | ^~ 2021-07-29T15:20:49,668 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:49,668 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:20:49,669 from Tools/RawRadialDistribution.cpp:33: 2021-07-29T15:20:49,669 Interface/Templates.h: At global scope: 2021-07-29T15:20:49,669 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:49,669 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:49,669 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:50,818 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o 2021-07-29T15:20:52,699 In file included from Basics/NeighborLocator.h:39, 2021-07-29T15:20:52,699 from Basics/NeighborCellLocator.h:38, 2021-07-29T15:20:52,699 from Tools/SecondaryNeighborLocator.h:43, 2021-07-29T15:20:52,699 from Tools/SecondaryNeighborLocator.cpp:40: 2021-07-29T15:20:52,700 Interface/Templates.h:51:13: warning: ‘void AsapNS::PyAsap_Dealloc(PyObject*)’ defined but not used [-Wunused-function] 2021-07-29T15:20:52,700 51 | static void PyAsap_Dealloc(PyObject *self) 2021-07-29T15:20:52,700 | ^~~~~~~~~~~~~~ 2021-07-29T15:20:53,466 mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/include/python3.9 -c VersionInfo_autogen/version_piwheels48_p.cpp -o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels48_p.o 2021-07-29T15:20:53,717 VersionInfo_autogen/version_piwheels48_p.cpp:15:63: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2021-07-29T15:20:53,718 15 | return ("ASAP version 3.12.8 parallel, compiled " __DATE__ " " __TIME__ " on piwheels48 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T15:20:53,718 | ^~~~~~~~ 2021-07-29T15:20:53,718 VersionInfo_autogen/version_piwheels48_p.cpp:15:76: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2021-07-29T15:20:53,719 15 | return ("ASAP version 3.12.8 parallel, compiled " __DATE__ " " __TIME__ " on piwheels48 using 'distutils with mpicxx -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 '"); 2021-07-29T15:20:53,719 | ^~~~~~~~ 2021-07-29T15:20:54,349 mpicxx -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Basics/AsapObject.o build/temp.linux-armv7l-3.9/Basics/Debug.o build/temp.linux-armv7l-3.9/Basics/DynamicAtoms.o build/temp.linux-armv7l-3.9/Basics/Exception.o build/temp.linux-armv7l-3.9/Basics/ImageAtoms.o build/temp.linux-armv7l-3.9/Basics/ImagePotential.o build/temp.linux-armv7l-3.9/Basics/Langevin.o build/temp.linux-armv7l-3.9/Basics/Matrix3x3.o build/temp.linux-armv7l-3.9/Basics/MolecularDynamics.o build/temp.linux-armv7l-3.9/Basics/MonteCarloAtoms.o build/temp.linux-armv7l-3.9/Basics/NeighborCellLocator.o build/temp.linux-armv7l-3.9/Basics/NeighborList.o build/temp.linux-armv7l-3.9/Basics/NeighborList2013.o build/temp.linux-armv7l-3.9/Basics/NormalAtoms.o build/temp.linux-armv7l-3.9/Basics/RandomNumbers.o build/temp.linux-armv7l-3.9/Basics/Timing.o build/temp.linux-armv7l-3.9/Basics/Vec.o build/temp.linux-armv7l-3.9/Basics/VelocityVerlet.o build/temp.linux-armv7l-3.9/Brenner/BrennerPotential.o build/temp.linux-armv7l-3.9/Brenner/bcuint.o build/temp.linux-armv7l-3.9/Brenner/caguts.o build/temp.linux-armv7l-3.9/Brenner/expand.o build/temp.linux-armv7l-3.9/Brenner/inter2d_iv.o build/temp.linux-armv7l-3.9/Brenner/mtable.o build/temp.linux-armv7l-3.9/Brenner/pibond.o build/temp.linux-armv7l-3.9/Brenner/radic.o build/temp.linux-armv7l-3.9/Brenner/radicdata.o build/temp.linux-armv7l-3.9/Brenner/sili_germ.o build/temp.linux-armv7l-3.9/Brenner/spgch.o build/temp.linux-armv7l-3.9/Interface/DynamicsInterface.o build/temp.linux-armv7l-3.9/Interface/EMTParameterProviderInterface.o build/temp.linux-armv7l-3.9/Interface/ExceptionInterface.o build/temp.linux-armv7l-3.9/Interface/NeighborLocatorInterface.o build/temp.linux-armv7l-3.9/Interface/OpenMPInterface.o build/temp.linux-armv7l-3.9/Interface/PTMInterface.o build/temp.linux-armv7l-3.9/Interface/PotentialInterface.o build/temp.linux-armv7l-3.9/Interface/PythonConversions.o build/temp.linux-armv7l-3.9/Interface/RDFInterface.o build/temp.linux-armv7l-3.9/Interface/ToolsInterface.o build/temp.linux-armv7l-3.9/PTM/alloy_types.o build/temp.linux-armv7l-3.9/PTM/canonical.o build/temp.linux-armv7l-3.9/PTM/convex_hull_incremental.o build/temp.linux-armv7l-3.9/PTM/deformation_gradient.o build/temp.linux-armv7l-3.9/PTM/graph_data.o build/temp.linux-armv7l-3.9/PTM/index_ptm.o build/temp.linux-armv7l-3.9/PTM/initialize_data.o build/temp.linux-armv7l-3.9/PTM/neighbour_ordering.o build/temp.linux-armv7l-3.9/PTM/normalize_vertices.o build/temp.linux-armv7l-3.9/PTM/qcprot/polar.o build/temp.linux-armv7l-3.9/PTM/qcprot/quat.o build/temp.linux-armv7l-3.9/PTM/voronoi/cell.o build/temp.linux-armv7l-3.9/Parallel/AsapMPI.o build/temp.linux-armv7l-3.9/Parallel/ParallelAtoms.o build/temp.linux-armv7l-3.9/Parallel/ParallelPotential.o build/temp.linux-armv7l-3.9/Parallel/RegularGridDecomposition.o build/temp.linux-armv7l-3.9/ParallelInterface/AsapParallel.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelAtomsInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelNeighborListInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/ParallelPotentialInterface.o build/temp.linux-armv7l-3.9/ParallelInterface/mpimodule.o build/temp.linux-armv7l-3.9/Potentials/EMT.o build/temp.linux-armv7l-3.9/Potentials/EMT2013.o build/temp.linux-armv7l-3.9/Potentials/EMTDefaultParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTPythonParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/EMTRasmussenParameterProvider.o build/temp.linux-armv7l-3.9/Potentials/LennardJones.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface.o build/temp.linux-armv7l-3.9/Potentials/MetalOxideInterface2.o build/temp.linux-armv7l-3.9/Potentials/MonteCarloEMT.o build/temp.linux-armv7l-3.9/Potentials/Morse.o build/temp.linux-armv7l-3.9/Potentials/Potential.o build/temp.linux-armv7l-3.9/Potentials/RGL.o build/temp.linux-armv7l-3.9/Potentials/RahmanStillingerLemberg.o build/temp.linux-armv7l-3.9/Tools/CNA.o build/temp.linux-armv7l-3.9/Tools/CoordinationNumbers.o build/temp.linux-armv7l-3.9/Tools/FullCNA.o build/temp.linux-armv7l-3.9/Tools/GetNeighborList.o build/temp.linux-armv7l-3.9/Tools/RawRadialDistribution.o build/temp.linux-armv7l-3.9/Tools/SecondaryNeighborLocator.o build/temp.linux-armv7l-3.9/VersionInfo_autogen/version_piwheels48_p.o -lm -o build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so 2021-07-29T15:20:56,009 running build_scripts 2021-07-29T15:20:56,010 creating build/scripts-3.9 2021-07-29T15:20:56,011 copying and adjusting scripts/asap-qsub -> build/scripts-3.9 2021-07-29T15:20:56,013 copying and adjusting scripts/asap-sbatch -> build/scripts-3.9 2021-07-29T15:20:56,015 changing mode of build/scripts-3.9/asap-qsub from 644 to 755 2021-07-29T15:20:56,016 changing mode of build/scripts-3.9/asap-sbatch from 644 to 755 2021-07-29T15:20:56,026 installing to build/bdist.linux-armv7l/wheel 2021-07-29T15:20:56,026 running install 2021-07-29T15:20:56,028 running install_lib 2021-07-29T15:20:56,032 creating build/bdist.linux-armv7l 2021-07-29T15:20:56,033 creating build/bdist.linux-armv7l/wheel 2021-07-29T15:20:56,034 copying build/lib.linux-armv7l-3.9/_asap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-29T15:20:56,252 creating build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,254 creating build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,255 copying build/lib.linux-armv7l-3.9/asap3/Internal/UtilityFunctions.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,257 creating build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T15:20:56,258 copying build/lib.linux-armv7l-3.9/asap3/Internal/Compatibility/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal/Compatibility 2021-07-29T15:20:56,260 copying build/lib.linux-armv7l-3.9/asap3/Internal/Subject.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,262 copying build/lib.linux-armv7l-3.9/asap3/Internal/ListOfElements.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,263 copying build/lib.linux-armv7l-3.9/asap3/Internal/MonteCarloAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,265 copying build/lib.linux-armv7l-3.9/asap3/Internal/EMTParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,268 copying build/lib.linux-armv7l-3.9/asap3/Internal/Collector.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,270 copying build/lib.linux-armv7l-3.9/asap3/Internal/OpenKIMcalculator.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,273 copying build/lib.linux-armv7l-3.9/asap3/Internal/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,274 copying build/lib.linux-armv7l-3.9/asap3/Internal/BuiltinPotentials.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,277 copying build/lib.linux-armv7l-3.9/asap3/Internal/ParallelListOfAtoms.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,280 copying build/lib.linux-armv7l-3.9/asap3/Internal/Threads.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,284 copying build/lib.linux-armv7l-3.9/asap3/Internal/Builtins.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,285 copying build/lib.linux-armv7l-3.9/asap3/Internal/CheckArray.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,287 copying build/lib.linux-armv7l-3.9/asap3/Internal/checkversion.py -> build/bdist.linux-armv7l/wheel/asap3/Internal 2021-07-29T15:20:56,289 copying build/lib.linux-armv7l-3.9/asap3/testtools.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,292 creating build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,293 copying build/lib.linux-armv7l-3.9/asap3/io/cpu_setup.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,295 copying build/lib.linux-armv7l-3.9/asap3/io/bundletrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,297 copying build/lib.linux-armv7l-3.9/asap3/io/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,299 copying build/lib.linux-armv7l-3.9/asap3/io/trajectory.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,302 copying build/lib.linux-armv7l-3.9/asap3/io/ReadOldFiles.py -> build/bdist.linux-armv7l/wheel/asap3/io 2021-07-29T15:20:56,304 copying build/lib.linux-armv7l-3.9/asap3/fixepydoc.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,306 creating build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T15:20:56,307 copying build/lib.linux-armv7l-3.9/asap3/optimize/fire.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T15:20:56,309 copying build/lib.linux-armv7l-3.9/asap3/optimize/mdmin.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T15:20:56,312 copying build/lib.linux-armv7l-3.9/asap3/optimize/optimize.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T15:20:56,314 copying build/lib.linux-armv7l-3.9/asap3/optimize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/optimize 2021-07-29T15:20:56,316 creating build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,317 copying build/lib.linux-armv7l-3.9/asap3/analysis/findcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,320 copying build/lib.linux-armv7l-3.9/asap3/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,322 copying build/lib.linux-armv7l-3.9/asap3/analysis/cutcluster.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,324 copying build/lib.linux-armv7l-3.9/asap3/analysis/clusterposition.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,326 copying build/lib.linux-armv7l-3.9/asap3/analysis/ptm.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,329 copying build/lib.linux-armv7l-3.9/asap3/analysis/averagepositions.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,331 copying build/lib.linux-armv7l-3.9/asap3/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,333 copying build/lib.linux-armv7l-3.9/asap3/analysis/localstructure.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,336 copying build/lib.linux-armv7l-3.9/asap3/analysis/particle.py -> build/bdist.linux-armv7l/wheel/asap3/analysis 2021-07-29T15:20:56,338 copying build/lib.linux-armv7l-3.9/asap3/version.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,340 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,341 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Start.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,344 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T15:20:56,345 creating build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T15:20:56,346 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T15:20:56,349 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T15:20:56,351 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves/Data 2021-07-29T15:20:56,353 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Surface.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T15:20:56,356 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T15:20:56,359 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Moves/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo/Moves 2021-07-29T15:20:56,360 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Basin.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,362 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Base.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,365 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,366 copying build/lib.linux-armv7l-3.9/asap3/MonteCarlo/Metropolis.py -> build/bdist.linux-armv7l/wheel/asap3/MonteCarlo 2021-07-29T15:20:56,369 creating build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,370 copying build/lib.linux-armv7l-3.9/asap3/setup/dislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,373 creating build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,374 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/dislocated.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,376 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,378 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/energy.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,380 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/nanocrystalline.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,382 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/quat_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,385 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/helpers.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,387 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,389 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/plane_utils.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,391 copying build/lib.linux-armv7l-3.9/asap3/setup/nanocrystalline/grain_structures.py -> build/bdist.linux-armv7l/wheel/asap3/setup/nanocrystalline 2021-07-29T15:20:56,393 copying build/lib.linux-armv7l-3.9/asap3/setup/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,394 copying build/lib.linux-armv7l-3.9/asap3/setup/VelocityDistribution.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,396 copying build/lib.linux-armv7l-3.9/asap3/setup/multidislocation.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,399 copying build/lib.linux-armv7l-3.9/asap3/setup/displacementfield.py -> build/bdist.linux-armv7l/wheel/asap3/setup 2021-07-29T15:20:56,402 creating build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,403 copying build/lib.linux-armv7l-3.9/asap3/Tools/MaterialProperties.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,405 copying build/lib.linux-armv7l-3.9/asap3/Tools/Timing.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,407 copying build/lib.linux-armv7l-3.9/asap3/Tools/ElasticConstants.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,410 copying build/lib.linux-armv7l-3.9/asap3/Tools/AsapFileToTrajectory.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,412 copying build/lib.linux-armv7l-3.9/asap3/Tools/EMT_two_atom_test.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,414 copying build/lib.linux-armv7l-3.9/asap3/Tools/SurfaceEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,416 copying build/lib.linux-armv7l-3.9/asap3/Tools/AtomicEnergies.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,418 copying build/lib.linux-armv7l-3.9/asap3/Tools/niflheim.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,420 copying build/lib.linux-armv7l-3.9/asap3/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,422 copying build/lib.linux-armv7l-3.9/asap3/Tools/OptimizationDatabase.py -> build/bdist.linux-armv7l/wheel/asap3/Tools 2021-07-29T15:20:56,425 creating build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,426 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/GetParameters.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,428 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Search.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,430 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/EMT.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,433 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Optimization.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,435 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Sampling.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,437 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Quantities.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,441 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,443 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/Performance.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,445 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,449 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/RGL.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,451 copying build/lib.linux-armv7l-3.9/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/bdist.linux-armv7l/wheel/asap3/Tools/ParameterOptimization 2021-07-29T15:20:56,454 copying build/lib.linux-armv7l-3.9/asap3/EMT2011_py.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,457 copying build/lib.linux-armv7l-3.9/asap3/mpi.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,459 copying build/lib.linux-armv7l-3.9/asap3/__init__.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,462 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,463 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/cluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,467 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/resizecluster.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,469 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/atommontecarlodata.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,471 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/langmuirExpression.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,473 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/AdsCalc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,475 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/clusteratom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,478 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/Logger.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,480 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:20:56,481 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/surface.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:20:56,484 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/atom.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:20:56,488 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/montecarlo 2021-07-29T15:20:56,490 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,491 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/mc_result.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc 2021-07-29T15:20:56,494 creating build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T15:20:56,495 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/symmetry.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T15:20:56,497 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/au.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T15:20:56,499 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/fcc.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T15:20:56,501 copying build/lib.linux-armv7l-3.9/asap3/nanoparticle_mc/data/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/nanoparticle_mc/data 2021-07-29T15:20:56,503 copying build/lib.linux-armv7l-3.9/asap3/memory.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,506 creating build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,507 copying build/lib.linux-armv7l-3.9/asap3/md/md.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,509 copying build/lib.linux-armv7l-3.9/asap3/md/verlet.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,511 copying build/lib.linux-armv7l-3.9/asap3/md/nptberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,513 copying build/lib.linux-armv7l-3.9/asap3/md/velocitydistribution.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,515 copying build/lib.linux-armv7l-3.9/asap3/md/nvtberendsen.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,517 copying build/lib.linux-armv7l-3.9/asap3/md/langevin.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,519 copying build/lib.linux-armv7l-3.9/asap3/md/npt.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,521 copying build/lib.linux-armv7l-3.9/asap3/md/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/md 2021-07-29T15:20:56,523 copying build/lib.linux-armv7l-3.9/asap3/constraints.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,526 creating build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T15:20:56,527 copying build/lib.linux-armv7l-3.9/asap3/visualize/colortable.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T15:20:56,531 copying build/lib.linux-armv7l-3.9/asap3/visualize/fieldplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T15:20:56,533 copying build/lib.linux-armv7l-3.9/asap3/visualize/primiplotter.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T15:20:56,536 copying build/lib.linux-armv7l-3.9/asap3/visualize/__init__.py -> build/bdist.linux-armv7l/wheel/asap3/visualize 2021-07-29T15:20:56,538 copying build/lib.linux-armv7l-3.9/asap3/EMT2013Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,540 copying build/lib.linux-armv7l-3.9/asap3/EMT2011Parameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,542 copying build/lib.linux-armv7l-3.9/asap3/timing.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,544 copying build/lib.linux-armv7l-3.9/asap3/GuptaParameters.py -> build/bdist.linux-armv7l/wheel/asap3 2021-07-29T15:20:56,546 running install_egg_info 2021-07-29T15:20:56,572 running egg_info 2021-07-29T15:20:56,572 creating asap3.egg-info 2021-07-29T15:20:56,573 writing asap3.egg-info/PKG-INFO 2021-07-29T15:20:56,575 writing dependency_links to asap3.egg-info/dependency_links.txt 2021-07-29T15:20:56,577 writing top-level names to asap3.egg-info/top_level.txt 2021-07-29T15:20:56,579 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T15:20:56,630 reading manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T15:20:56,632 reading manifest template 'MANIFEST.in' 2021-07-29T15:20:56,728 warning: no files found matching 'Test/testVerlet.pickle' 2021-07-29T15:20:56,728 warning: no files found matching 'Test/TestParallel-openmpi.sh' 2021-07-29T15:20:56,729 adding license file 'LICENSE' 2021-07-29T15:20:56,729 adding license file 'LICENSE.LESSER' 2021-07-29T15:20:56,755 writing manifest file 'asap3.egg-info/SOURCES.txt' 2021-07-29T15:20:56,757 Copying asap3.egg-info to build/bdist.linux-armv7l/wheel/asap3-3.12.8-py3.9.egg-info 2021-07-29T15:20:56,766 running install_scripts 2021-07-29T15:20:56,859 creating build/bdist.linux-armv7l/wheel/asap3-3.12.8.data 2021-07-29T15:20:56,859 creating build/bdist.linux-armv7l/wheel/asap3-3.12.8.data/scripts 2021-07-29T15:20:56,860 copying build/scripts-3.9/asap-qsub -> build/bdist.linux-armv7l/wheel/asap3-3.12.8.data/scripts 2021-07-29T15:20:56,863 copying build/scripts-3.9/asap-sbatch -> build/bdist.linux-armv7l/wheel/asap3-3.12.8.data/scripts 2021-07-29T15:20:56,865 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.8.data/scripts/asap-qsub to 755 2021-07-29T15:20:56,865 changing mode of build/bdist.linux-armv7l/wheel/asap3-3.12.8.data/scripts/asap-sbatch to 755 2021-07-29T15:20:56,879 adding license file "LICENSE.LESSER" (matched pattern "LICEN[CS]E*") 2021-07-29T15:20:56,880 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T15:20:56,887 creating build/bdist.linux-armv7l/wheel/asap3-3.12.8.dist-info/WHEEL 2021-07-29T15:20:56,890 creating '/tmp/pip-wheel-z2f1mcz9/asap3-3.12.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T15:20:59,219 adding '_asap.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T15:20:59,326 adding 'asap3/EMT2011Parameters.py' 2021-07-29T15:20:59,329 adding 'asap3/EMT2011_py.py' 2021-07-29T15:20:59,331 adding 'asap3/EMT2013Parameters.py' 2021-07-29T15:20:59,333 adding 'asap3/GuptaParameters.py' 2021-07-29T15:20:59,334 adding 'asap3/__init__.py' 2021-07-29T15:20:59,339 adding 'asap3/constraints.py' 2021-07-29T15:20:59,340 adding 'asap3/fixepydoc.py' 2021-07-29T15:20:59,341 adding 'asap3/memory.py' 2021-07-29T15:20:59,343 adding 'asap3/mpi.py' 2021-07-29T15:20:59,344 adding 'asap3/testtools.py' 2021-07-29T15:20:59,346 adding 'asap3/timing.py' 2021-07-29T15:20:59,347 adding 'asap3/version.py' 2021-07-29T15:20:59,351 adding 'asap3/Internal/BuiltinPotentials.py' 2021-07-29T15:20:59,353 adding 'asap3/Internal/Builtins.py' 2021-07-29T15:20:59,355 adding 'asap3/Internal/CheckArray.py' 2021-07-29T15:20:59,357 adding 'asap3/Internal/Collector.py' 2021-07-29T15:20:59,359 adding 'asap3/Internal/EMTParameters.py' 2021-07-29T15:20:59,360 adding 'asap3/Internal/ListOfElements.py' 2021-07-29T15:20:59,362 adding 'asap3/Internal/MonteCarloAtoms.py' 2021-07-29T15:20:59,365 adding 'asap3/Internal/OpenKIMcalculator.py' 2021-07-29T15:20:59,369 adding 'asap3/Internal/ParallelListOfAtoms.py' 2021-07-29T15:20:59,371 adding 'asap3/Internal/Subject.py' 2021-07-29T15:20:59,373 adding 'asap3/Internal/Threads.py' 2021-07-29T15:20:59,374 adding 'asap3/Internal/UtilityFunctions.py' 2021-07-29T15:20:59,376 adding 'asap3/Internal/__init__.py' 2021-07-29T15:20:59,377 adding 'asap3/Internal/checkversion.py' 2021-07-29T15:20:59,379 adding 'asap3/Internal/Compatibility/__init__.py' 2021-07-29T15:20:59,381 adding 'asap3/MonteCarlo/Base.py' 2021-07-29T15:20:59,383 adding 'asap3/MonteCarlo/Basin.py' 2021-07-29T15:20:59,384 adding 'asap3/MonteCarlo/Metropolis.py' 2021-07-29T15:20:59,386 adding 'asap3/MonteCarlo/Start.py' 2021-07-29T15:20:59,387 adding 'asap3/MonteCarlo/__init__.py' 2021-07-29T15:20:59,390 adding 'asap3/MonteCarlo/Moves/Base.py' 2021-07-29T15:20:59,392 adding 'asap3/MonteCarlo/Moves/Surface.py' 2021-07-29T15:20:59,394 adding 'asap3/MonteCarlo/Moves/__init__.py' 2021-07-29T15:20:59,395 adding 'asap3/MonteCarlo/Moves/Data/__init__.py' 2021-07-29T15:20:59,397 adding 'asap3/MonteCarlo/Moves/Data/fcc.py' 2021-07-29T15:20:59,398 adding 'asap3/MonteCarlo/Moves/Data/symmetry.py' 2021-07-29T15:20:59,400 adding 'asap3/Tools/AsapFileToTrajectory.py' 2021-07-29T15:20:59,401 adding 'asap3/Tools/AtomicEnergies.py' 2021-07-29T15:20:59,403 adding 'asap3/Tools/EMT_two_atom_test.py' 2021-07-29T15:20:59,405 adding 'asap3/Tools/ElasticConstants.py' 2021-07-29T15:20:59,406 adding 'asap3/Tools/MaterialProperties.py' 2021-07-29T15:20:59,408 adding 'asap3/Tools/OptimizationDatabase.py' 2021-07-29T15:20:59,409 adding 'asap3/Tools/SurfaceEnergies.py' 2021-07-29T15:20:59,410 adding 'asap3/Tools/Timing.py' 2021-07-29T15:20:59,411 adding 'asap3/Tools/__init__.py' 2021-07-29T15:20:59,413 adding 'asap3/Tools/niflheim.py' 2021-07-29T15:20:59,415 adding 'asap3/Tools/ParameterOptimization/EMT.py' 2021-07-29T15:20:59,416 adding 'asap3/Tools/ParameterOptimization/GetParameters.py' 2021-07-29T15:20:59,418 adding 'asap3/Tools/ParameterOptimization/Optimization.py' 2021-07-29T15:20:59,420 adding 'asap3/Tools/ParameterOptimization/Performance.py' 2021-07-29T15:20:59,424 adding 'asap3/Tools/ParameterOptimization/Quantities.py' 2021-07-29T15:20:59,425 adding 'asap3/Tools/ParameterOptimization/RGL.py' 2021-07-29T15:20:59,427 adding 'asap3/Tools/ParameterOptimization/Sampling.py' 2021-07-29T15:20:59,434 adding 'asap3/Tools/ParameterOptimization/ScipyFmin.py' 2021-07-29T15:20:59,436 adding 'asap3/Tools/ParameterOptimization/Search.py' 2021-07-29T15:20:59,438 adding 'asap3/Tools/ParameterOptimization/SearchParallel.py' 2021-07-29T15:20:59,440 adding 'asap3/Tools/ParameterOptimization/__init__.py' 2021-07-29T15:20:59,441 adding 'asap3/analysis/__init__.py' 2021-07-29T15:20:59,443 adding 'asap3/analysis/averagepositions.py' 2021-07-29T15:20:59,444 adding 'asap3/analysis/clusterposition.py' 2021-07-29T15:20:59,446 adding 'asap3/analysis/cutcluster.py' 2021-07-29T15:20:59,447 adding 'asap3/analysis/findcluster.py' 2021-07-29T15:20:59,449 adding 'asap3/analysis/localstructure.py' 2021-07-29T15:20:59,450 adding 'asap3/analysis/particle.py' 2021-07-29T15:20:59,453 adding 'asap3/analysis/ptm.py' 2021-07-29T15:20:59,455 adding 'asap3/analysis/rdf.py' 2021-07-29T15:20:59,457 adding 'asap3/io/ReadOldFiles.py' 2021-07-29T15:20:59,458 adding 'asap3/io/__init__.py' 2021-07-29T15:20:59,460 adding 'asap3/io/bundletrajectory.py' 2021-07-29T15:20:59,462 adding 'asap3/io/cpu_setup.py' 2021-07-29T15:20:59,463 adding 'asap3/io/trajectory.py' 2021-07-29T15:20:59,465 adding 'asap3/md/__init__.py' 2021-07-29T15:20:59,467 adding 'asap3/md/langevin.py' 2021-07-29T15:20:59,468 adding 'asap3/md/md.py' 2021-07-29T15:20:59,469 adding 'asap3/md/npt.py' 2021-07-29T15:20:59,471 adding 'asap3/md/nptberendsen.py' 2021-07-29T15:20:59,472 adding 'asap3/md/nvtberendsen.py' 2021-07-29T15:20:59,473 adding 'asap3/md/velocitydistribution.py' 2021-07-29T15:20:59,474 adding 'asap3/md/verlet.py' 2021-07-29T15:20:59,476 adding 'asap3/nanoparticle_mc/AdsCalc.py' 2021-07-29T15:20:59,478 adding 'asap3/nanoparticle_mc/Logger.py' 2021-07-29T15:20:59,479 adding 'asap3/nanoparticle_mc/__init__.py' 2021-07-29T15:20:59,480 adding 'asap3/nanoparticle_mc/atommontecarlodata.py' 2021-07-29T15:20:59,483 adding 'asap3/nanoparticle_mc/cluster.py' 2021-07-29T15:20:59,487 adding 'asap3/nanoparticle_mc/clusteratom.py' 2021-07-29T15:20:59,488 adding 'asap3/nanoparticle_mc/langmuirExpression.py' 2021-07-29T15:20:59,489 adding 'asap3/nanoparticle_mc/mc_result.py' 2021-07-29T15:20:59,490 adding 'asap3/nanoparticle_mc/resizecluster.py' 2021-07-29T15:20:59,492 adding 'asap3/nanoparticle_mc/data/__init__.py' 2021-07-29T15:20:59,493 adding 'asap3/nanoparticle_mc/data/au.py' 2021-07-29T15:20:59,495 adding 'asap3/nanoparticle_mc/data/fcc.py' 2021-07-29T15:20:59,496 adding 'asap3/nanoparticle_mc/data/symmetry.py' 2021-07-29T15:20:59,498 adding 'asap3/nanoparticle_mc/montecarlo/__init__.py' 2021-07-29T15:20:59,502 adding 'asap3/nanoparticle_mc/montecarlo/atom.py' 2021-07-29T15:20:59,506 adding 'asap3/nanoparticle_mc/montecarlo/surface.py' 2021-07-29T15:20:59,508 adding 'asap3/optimize/__init__.py' 2021-07-29T15:20:59,509 adding 'asap3/optimize/fire.py' 2021-07-29T15:20:59,510 adding 'asap3/optimize/mdmin.py' 2021-07-29T15:20:59,512 adding 'asap3/optimize/optimize.py' 2021-07-29T15:20:59,513 adding 'asap3/setup/VelocityDistribution.py' 2021-07-29T15:20:59,514 adding 'asap3/setup/__init__.py' 2021-07-29T15:20:59,516 adding 'asap3/setup/dislocation.py' 2021-07-29T15:20:59,518 adding 'asap3/setup/displacementfield.py' 2021-07-29T15:20:59,520 adding 'asap3/setup/multidislocation.py' 2021-07-29T15:20:59,521 adding 'asap3/setup/nanocrystalline/__init__.py' 2021-07-29T15:20:59,523 adding 'asap3/setup/nanocrystalline/dislocated.py' 2021-07-29T15:20:59,524 adding 'asap3/setup/nanocrystalline/energy.py' 2021-07-29T15:20:59,525 adding 'asap3/setup/nanocrystalline/grain_structures.py' 2021-07-29T15:20:59,527 adding 'asap3/setup/nanocrystalline/helpers.py' 2021-07-29T15:20:59,528 adding 'asap3/setup/nanocrystalline/nanocrystalline.py' 2021-07-29T15:20:59,531 adding 'asap3/setup/nanocrystalline/nanocrystalline_orig.py' 2021-07-29T15:20:59,532 adding 'asap3/setup/nanocrystalline/plane_utils.py' 2021-07-29T15:20:59,533 adding 'asap3/setup/nanocrystalline/quat_utils.py' 2021-07-29T15:20:59,535 adding 'asap3/visualize/__init__.py' 2021-07-29T15:20:59,539 adding 'asap3/visualize/colortable.py' 2021-07-29T15:20:59,541 adding 'asap3/visualize/fieldplotter.py' 2021-07-29T15:20:59,546 adding 'asap3/visualize/primiplotter.py' 2021-07-29T15:20:59,549 adding 'asap3-3.12.8.data/scripts/asap-qsub' 2021-07-29T15:20:59,550 adding 'asap3-3.12.8.data/scripts/asap-sbatch' 2021-07-29T15:20:59,558 adding 'asap3-3.12.8.dist-info/LICENSE' 2021-07-29T15:20:59,560 adding 'asap3-3.12.8.dist-info/LICENSE.LESSER' 2021-07-29T15:20:59,561 adding 'asap3-3.12.8.dist-info/METADATA' 2021-07-29T15:20:59,562 adding 'asap3-3.12.8.dist-info/WHEEL' 2021-07-29T15:20:59,563 adding 'asap3-3.12.8.dist-info/top_level.txt' 2021-07-29T15:20:59,565 adding 'asap3-3.12.8.dist-info/RECORD' 2021-07-29T15:20:59,626 removing build/bdist.linux-armv7l/wheel 2021-07-29T15:20:59,804 Building wheel for asap3 (setup.py): finished with status 'done' 2021-07-29T15:20:59,870 Created wheel for asap3: filename=asap3-3.12.8-cp39-cp39-linux_armv7l.whl size=4732137 sha256=4ea12a08002a856a8100c3ccf96c0cb7a30f681068ea00be5f57f5e657843aa4 2021-07-29T15:20:59,871 Stored in directory: /tmp/pip-ephem-wheel-cache-8a_d9wjj/wheels/da/2c/ee/ae24413adb74ca214773e27011ba67fb73a3c33c4fed888c21 2021-07-29T15:20:59,888 Successfully built asap3 2021-07-29T15:21:00,048 Removed build tracker: '/tmp/pip-req-tracker-ffs4b79g'