2021-07-29T18:02:26,263 Created temporary directory: /tmp/pip-ephem-wheel-cache-bccxumht
2021-07-29T18:02:26,266 Created temporary directory: /tmp/pip-req-tracker-_1jb3gio
2021-07-29T18:02:26,267 Initialized build tracking at /tmp/pip-req-tracker-_1jb3gio
2021-07-29T18:02:26,267 Created build tracker: /tmp/pip-req-tracker-_1jb3gio
2021-07-29T18:02:26,267 Entered build tracker: /tmp/pip-req-tracker-_1jb3gio
2021-07-29T18:02:26,268 Created temporary directory: /tmp/pip-wheel-a694zaxu
2021-07-29T18:02:26,300 WARNING: The index url "/" seems invalid, please provide a scheme.
2021-07-29T18:02:26,301 WARNING: The index url "t" seems invalid, please provide a scheme.
2021-07-29T18:02:26,301 WARNING: The index url "m" seems invalid, please provide a scheme.
2021-07-29T18:02:26,301 WARNING: The index url "p" seems invalid, please provide a scheme.
2021-07-29T18:02:26,302 Looking in indexes: https://pypi.org/simple, /, t, m, p
2021-07-29T18:02:26,304 WARNING: Location '/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T18:02:26,305 WARNING: Location 't/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T18:02:26,305 WARNING: Location 'm/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T18:02:26,305 WARNING: Location 'p/adaptivepele/' is ignored: it is either a non-existing path or lacks a specific scheme.
2021-07-29T18:02:26,306 1 location(s) to search for versions of adaptivepele:
2021-07-29T18:02:26,306 * https://pypi.org/simple/adaptivepele/
2021-07-29T18:02:26,306 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-07-29T18:02:26,306 Getting page https://pypi.org/simple/adaptivepele/
2021-07-29T18:02:26,308 Found index url https://pypi.org/simple
2021-07-29T18:02:26,399   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-07-29T18:02:26,399   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-07-29T18:02:26,399   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-07-29T18:02:26,400   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-07-29T18:02:26,400   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-07-29T18:02:26,400   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-07-29T18:02:26,400   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-07-29T18:02:26,401 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2021-07-29T18:02:26,419 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-07-29T18:02:26,437 Collecting adaptivepele==1.7.1
2021-07-29T18:02:26,438   Created temporary directory: /tmp/pip-unpack-mkxkudcl
2021-07-29T18:02:26,482   Downloading AdaptivePELE-1.7.1.tar.gz (3.0 MB)
2021-07-29T18:02:27,768   Added adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 to build tracker '/tmp/pip-req-tracker-_1jb3gio'
2021-07-29T18:02:27,769     Running setup.py (path:/tmp/pip-wheel-a694zaxu/adaptivepele_befe1afaf6eb40758acaae5afef55975/setup.py) egg_info for package adaptivepele
2021-07-29T18:02:27,770     Created temporary directory: /tmp/pip-pip-egg-info-fccchybl
2021-07-29T18:02:27,770     Running command python setup.py egg_info
2021-07-29T18:02:28,916     Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-29T18:02:29,035     running egg_info
2021-07-29T18:02:29,037     creating /tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info
2021-07-29T18:02:29,038     writing /tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/PKG-INFO
2021-07-29T18:02:29,041     writing dependency_links to /tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/dependency_links.txt
2021-07-29T18:02:29,043     writing requirements to /tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/requires.txt
2021-07-29T18:02:29,044     writing top-level names to /tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/top_level.txt
2021-07-29T18:02:29,046     writing manifest file '/tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T18:02:29,207     reading manifest file '/tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T18:02:29,209     reading manifest template 'MANIFEST.in'
2021-07-29T18:02:29,249     writing manifest file '/tmp/pip-pip-egg-info-fccchybl/AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T18:02:29,355   Source in /tmp/pip-wheel-a694zaxu/adaptivepele_befe1afaf6eb40758acaae5afef55975 has version 1.7.1, which satisfies requirement adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155
2021-07-29T18:02:29,356   Removed adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 from build tracker '/tmp/pip-req-tracker-_1jb3gio'
2021-07-29T18:02:29,360 Created temporary directory: /tmp/pip-unpack-6dpho19f
2021-07-29T18:02:29,360 Building wheels for collected packages: adaptivepele
2021-07-29T18:02:29,365   Created temporary directory: /tmp/pip-wheel-ecn6myo5
2021-07-29T18:02:29,365   Building wheel for adaptivepele (setup.py): started
2021-07-29T18:02:29,365   Destination directory: /tmp/pip-wheel-ecn6myo5
2021-07-29T18:02:29,366   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a694zaxu/adaptivepele_befe1afaf6eb40758acaae5afef55975/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a694zaxu/adaptivepele_befe1afaf6eb40758acaae5afef55975/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ecn6myo5
2021-07-29T18:02:30,502   Warning: 'classifiers' should be a list, got type 'tuple'
2021-07-29T18:02:30,637   running bdist_wheel
2021-07-29T18:02:30,642   running build
2021-07-29T18:02:30,642   running build_py
2021-07-29T18:02:30,776   creating build
2021-07-29T18:02:30,776   creating build/lib.linux-armv7l-3.9
2021-07-29T18:02:30,777   creating build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,778   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,780   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,782   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,784   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,786   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:30,789   creating build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,790   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,791   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,793   copying AdaptivePELE/constants/buildEnvironments.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,795   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,797   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/constants
2021-07-29T18:02:30,800   creating build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,801   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,803   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,805   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,808   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,809   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,811   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,813   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,815   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,817   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,819   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,821   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,824   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,826   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,829   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,831   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,834   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,836   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,838   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:02:30,842   creating build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,843   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,846   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,848   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,850   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,854   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,855   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,857   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,859   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,861   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,863   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/tests
2021-07-29T18:02:30,866   creating build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,867   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,869   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,870   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,873   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,878   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/clustering
2021-07-29T18:02:30,881   creating build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T18:02:30,882   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T18:02:30,884   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T18:02:30,886   creating build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T18:02:30,888   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T18:02:30,891   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T18:02:30,893   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T18:02:30,895   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/simulation
2021-07-29T18:02:30,900   creating build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,901   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,904   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,905   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,909   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,910   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,912   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,915   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/utilities
2021-07-29T18:02:30,919   creating build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T18:02:30,920   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T18:02:30,921   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T18:02:30,924   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/validator
2021-07-29T18:02:30,929   creating build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,930   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,933   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,935   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,937   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,939   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,941   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,943   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,946   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,948   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,949   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,952   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,954   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,956   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,959   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,961   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,963   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,965   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,968   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,969   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,971   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,973   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,975   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,977   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,980   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,982   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,985   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,987   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,989   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,991   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,994   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,996   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:30,998   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,000   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,002   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,004   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,006   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,008   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,010   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,012   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,014   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,016   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,018   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,020   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,022   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,024   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,027   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/analysis
2021-07-29T18:02:31,030   creating build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,031   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,033   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,034   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,036   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,040   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.9/AdaptivePELE/spawning
2021-07-29T18:02:31,054   running build_ext
2021-07-29T18:02:31,059   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2021-07-29T18:02:31,677   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-a694zaxu/adaptivepele_befe1afaf6eb40758acaae5afef55975/AdaptivePELE/atomset/atomset.pxd
2021-07-29T18:02:31,677     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-29T18:02:36,421   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-07-29T18:02:36,422   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-07-29T18:02:36,423   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-07-29T18:02:36,423   building 'AdaptivePELE.atomset.atomset' extension
2021-07-29T18:02:36,424   creating build/temp.linux-armv7l-3.9
2021-07-29T18:02:36,424   creating build/temp.linux-armv7l-3.9/AdaptivePELE
2021-07-29T18:02:36,425   creating build/temp.linux-armv7l-3.9/AdaptivePELE/atomset
2021-07-29T18:02:36,425   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o
2021-07-29T18:02:36,875   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T18:02:36,875                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T18:02:36,876                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T18:02:36,876                    from AdaptivePELE/atomset/atomset.c:612:
2021-07-29T18:02:36,876   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T18:02:36,876      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T18:02:36,876         |  ^~~~~~~
2021-07-29T18:03:08,029   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so
2021-07-29T18:03:08,271   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2021-07-29T18:03:08,271   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2021-07-29T18:03:08,673   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T18:03:08,673                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T18:03:08,674                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T18:03:08,674                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2021-07-29T18:03:08,674   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T18:03:08,674      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T18:03:08,674         |  ^~~~~~~
2021-07-29T18:03:20,259   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so
2021-07-29T18:03:20,413   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2021-07-29T18:03:20,413   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/RMSDCalculator.o
2021-07-29T18:03:20,788   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T18:03:20,788                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T18:03:20,788                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T18:03:20,788                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2021-07-29T18:03:20,789   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T18:03:20,789      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T18:03:20,789         |  ^~~~~~~
2021-07-29T18:03:26,637   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so
2021-07-29T18:03:26,767   building 'AdaptivePELE.freeEnergies.utils' extension
2021-07-29T18:03:26,768   creating build/temp.linux-armv7l-3.9/AdaptivePELE/freeEnergies
2021-07-29T18:03:26,768   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.9/AdaptivePELE/freeEnergies/utils.o
2021-07-29T18:03:27,171   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-29T18:03:27,171                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-29T18:03:27,171                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-29T18:03:27,172                    from AdaptivePELE/freeEnergies/utils.c:610:
2021-07-29T18:03:27,172   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-29T18:03:27,172      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-29T18:03:27,172         |  ^~~~~~~
2021-07-29T18:03:42,438   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so
2021-07-29T18:03:42,636   installing to build/bdist.linux-armv7l/wheel
2021-07-29T18:03:42,637   running install
2021-07-29T18:03:42,638   running install_lib
2021-07-29T18:03:42,645   creating build/bdist.linux-armv7l
2021-07-29T18:03:42,645   creating build/bdist.linux-armv7l/wheel
2021-07-29T18:03:42,647   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,649   copying build/lib.linux-armv7l-3.9/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,653   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,653   copying build/lib.linux-armv7l-3.9/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,656   copying build/lib.linux-armv7l-3.9/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,658   copying build/lib.linux-armv7l-3.9/AdaptivePELE/constants/buildEnvironments.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,660   copying build/lib.linux-armv7l-3.9/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,662   copying build/lib.linux-armv7l-3.9/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-07-29T18:03:42,665   copying build/lib.linux-armv7l-3.9/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,668   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,669   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,671   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,673   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,676   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,678   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,680   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,682   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,684   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,687   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,689   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,691   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,693   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,696   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,699   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,731   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,733   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,736   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,738   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,741   copying build/lib.linux-armv7l-3.9/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-07-29T18:03:42,744   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,745   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,748   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,751   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,753   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,757   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,758   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,760   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,763   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,765   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,767   copying build/lib.linux-armv7l-3.9/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-07-29T18:03:42,770   copying build/lib.linux-armv7l-3.9/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,774   copying build/lib.linux-armv7l-3.9/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,776   copying build/lib.linux-armv7l-3.9/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-07-29T18:03:42,779   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,780   copying build/lib.linux-armv7l-3.9/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,782   copying build/lib.linux-armv7l-3.9/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,784   copying build/lib.linux-armv7l-3.9/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,786   copying build/lib.linux-armv7l-3.9/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,791   copying build/lib.linux-armv7l-3.9/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-07-29T18:03:42,794   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,795   copying build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,797   copying build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,799   copying build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,821   copying build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,832   copying build/lib.linux-armv7l-3.9/AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-07-29T18:03:42,883   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-07-29T18:03:42,884   copying build/lib.linux-armv7l-3.9/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-07-29T18:03:42,887   copying build/lib.linux-armv7l-3.9/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-07-29T18:03:42,888   copying build/lib.linux-armv7l-3.9/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-07-29T18:03:42,890   copying build/lib.linux-armv7l-3.9/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-07-29T18:03:42,895   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,895   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/conda_deployment.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,897   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,899   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,902   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,903   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,905   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,908   copying build/lib.linux-armv7l-3.9/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-07-29T18:03:42,911   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-07-29T18:03:42,912   copying build/lib.linux-armv7l-3.9/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-07-29T18:03:42,914   copying build/lib.linux-armv7l-3.9/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-07-29T18:03:42,916   copying build/lib.linux-armv7l-3.9/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-07-29T18:03:42,920   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,921   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,924   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,926   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,928   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,930   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,932   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,935   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/calculateDistances.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,938   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,940   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,942   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,945   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,947   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,949   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,952   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,954   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/simulationToCsv.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,956   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,958   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,961   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,963   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,965   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,966   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,969   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,971   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,974   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,976   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,979   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,981   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,983   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,986   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,989   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,991   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,993   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,995   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:42,997   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,000   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,002   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,005   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,008   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,010   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/unbinding.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,013   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,015   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,018   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,021   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/reportSimulation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,024   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,026   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,030   copying build/lib.linux-armv7l-3.9/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-07-29T18:03:43,033   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,034   copying build/lib.linux-armv7l-3.9/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,036   copying build/lib.linux-armv7l-3.9/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,038   copying build/lib.linux-armv7l-3.9/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,040   copying build/lib.linux-armv7l-3.9/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,044   copying build/lib.linux-armv7l-3.9/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-07-29T18:03:43,046   running install_egg_info
2021-07-29T18:03:43,075   running egg_info
2021-07-29T18:03:43,076   writing AdaptivePELE.egg-info/PKG-INFO
2021-07-29T18:03:43,079   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2021-07-29T18:03:43,080   writing requirements to AdaptivePELE.egg-info/requires.txt
2021-07-29T18:03:43,081   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2021-07-29T18:03:43,114   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T18:03:43,120   reading manifest template 'MANIFEST.in'
2021-07-29T18:03:43,162   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-07-29T18:03:43,165   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1-py3.9.egg-info
2021-07-29T18:03:43,176   running install_scripts
2021-07-29T18:03:43,223   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1.dist-info/WHEEL
2021-07-29T18:03:43,226   creating '/tmp/pip-wheel-ecn6myo5/AdaptivePELE-1.7.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-29T18:03:43,228   adding 'AdaptivePELE/__init__.py'
2021-07-29T18:03:43,234   adding 'AdaptivePELE/adaptiveSampling.py'
2021-07-29T18:03:43,236   adding 'AdaptivePELE/automateRoundsAdaptive.py'
2021-07-29T18:03:43,238   adding 'AdaptivePELE/makeRelease.py'
2021-07-29T18:03:43,239   adding 'AdaptivePELE/runAllTests.py'
2021-07-29T18:03:43,242   adding 'AdaptivePELE/analysis/__init__.py'
2021-07-29T18:03:43,243   adding 'AdaptivePELE/analysis/addRejectedSteps.py'
2021-07-29T18:03:43,245   adding 'AdaptivePELE/analysis/analyse.py'
2021-07-29T18:03:43,247   adding 'AdaptivePELE/analysis/analyseClustering.py'
2021-07-29T18:03:43,248   adding 'AdaptivePELE/analysis/analysis_utils.py'
2021-07-29T18:03:43,250   adding 'AdaptivePELE/analysis/autoCorrelation.py'
2021-07-29T18:03:43,252   adding 'AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py'
2021-07-29T18:03:43,254   adding 'AdaptivePELE/analysis/bestStructs.py'
2021-07-29T18:03:43,256   adding 'AdaptivePELE/analysis/calculateDistances.py'
2021-07-29T18:03:43,257   adding 'AdaptivePELE/analysis/calculateSASAvalues.py'
2021-07-29T18:03:43,259   adding 'AdaptivePELE/analysis/cluster.py'
2021-07-29T18:03:43,262   adding 'AdaptivePELE/analysis/clusterAdaptiveRun.py'
2021-07-29T18:03:43,263   adding 'AdaptivePELE/analysis/clusters_lagtime_grid.py'
2021-07-29T18:03:43,265   adding 'AdaptivePELE/analysis/compareClustering.py'
2021-07-29T18:03:43,266   adding 'AdaptivePELE/analysis/convertTrajectory.py'
2021-07-29T18:03:43,268   adding 'AdaptivePELE/analysis/correctRMSD.py'
2021-07-29T18:03:43,270   adding 'AdaptivePELE/analysis/count_clusters.py'
2021-07-29T18:03:43,271   adding 'AdaptivePELE/analysis/crossValidationClustering.py'
2021-07-29T18:03:43,273   adding 'AdaptivePELE/analysis/dehidratate_and_align.py'
2021-07-29T18:03:43,274   adding 'AdaptivePELE/analysis/extract_ligand_traj.py'
2021-07-29T18:03:43,275   adding 'AdaptivePELE/analysis/filter_by_radius.py'
2021-07-29T18:03:43,277   adding 'AdaptivePELE/analysis/findfirstbindingevent.py'
2021-07-29T18:03:43,278   adding 'AdaptivePELE/analysis/foldersFirstBindingEvent.py'
2021-07-29T18:03:43,279   adding 'AdaptivePELE/analysis/generateBox.py'
2021-07-29T18:03:43,281   adding 'AdaptivePELE/analysis/histCM.py'
2021-07-29T18:03:43,282   adding 'AdaptivePELE/analysis/identifyClusterSnapshot.py'
2021-07-29T18:03:43,285   adding 'AdaptivePELE/analysis/interactivePlot.py'
2021-07-29T18:03:43,287   adding 'AdaptivePELE/analysis/makePNGs.py'
2021-07-29T18:03:43,288   adding 'AdaptivePELE/analysis/networkCM.py'
2021-07-29T18:03:43,290   adding 'AdaptivePELE/analysis/numberOfClusters.py'
2021-07-29T18:03:43,291   adding 'AdaptivePELE/analysis/pathwayRMSD.py'
2021-07-29T18:03:43,292   adding 'AdaptivePELE/analysis/plot3DNetwork.py'
2021-07-29T18:03:43,295   adding 'AdaptivePELE/analysis/plotAdaptive.py'
2021-07-29T18:03:43,296   adding 'AdaptivePELE/analysis/plotRMSF.py'
2021-07-29T18:03:43,298   adding 'AdaptivePELE/analysis/plotSpawningClusters.py'
2021-07-29T18:03:43,299   adding 'AdaptivePELE/analysis/reportSimulation.py'
2021-07-29T18:03:43,302   adding 'AdaptivePELE/analysis/selectOnPlot.py'
2021-07-29T18:03:43,303   adding 'AdaptivePELE/analysis/simple_postprocessing.py'
2021-07-29T18:03:43,305   adding 'AdaptivePELE/analysis/simulationToCsv.py'
2021-07-29T18:03:43,306   adding 'AdaptivePELE/analysis/splitTrajectory.py'
2021-07-29T18:03:43,307   adding 'AdaptivePELE/analysis/standarize_MD_energies.py'
2021-07-29T18:03:43,309   adding 'AdaptivePELE/analysis/trajectory_processing.py'
2021-07-29T18:03:43,310   adding 'AdaptivePELE/analysis/unbinding.py'
2021-07-29T18:03:43,311   adding 'AdaptivePELE/analysis/writeClusteringStructures.py'
2021-07-29T18:03:43,313   adding 'AdaptivePELE/analysis/writeNetworkFiles.py'
2021-07-29T18:03:43,314   adding 'AdaptivePELE/analysis/writeTrajToSnapshot.py'
2021-07-29T18:03:43,398   adding 'AdaptivePELE/atomset/RMSDCalculator.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T18:03:43,554   adding 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T18:03:43,561   adding 'AdaptivePELE/atomset/__init__.py'
2021-07-29T18:03:43,910   adding 'AdaptivePELE/atomset/atomset.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T18:03:43,926   adding 'AdaptivePELE/atomset/setup.py'
2021-07-29T18:03:43,928   adding 'AdaptivePELE/clustering/__init__.py'
2021-07-29T18:03:43,937   adding 'AdaptivePELE/clustering/clustering.py'
2021-07-29T18:03:43,939   adding 'AdaptivePELE/clustering/clusteringTypes.py'
2021-07-29T18:03:43,940   adding 'AdaptivePELE/clustering/thresholdcalculator.py'
2021-07-29T18:03:43,942   adding 'AdaptivePELE/clustering/thresholdcalculatortypes.py'
2021-07-29T18:03:43,943   adding 'AdaptivePELE/constants/__init__.py'
2021-07-29T18:03:43,945   adding 'AdaptivePELE/constants/blockNames.py'
2021-07-29T18:03:43,946   adding 'AdaptivePELE/constants/buildEnvironments.py'
2021-07-29T18:03:43,948   adding 'AdaptivePELE/constants/constants.py'
2021-07-29T18:03:43,949   adding 'AdaptivePELE/constants/symmetries.py'
2021-07-29T18:03:43,951   adding 'AdaptivePELE/freeEnergies/__init__.py'
2021-07-29T18:03:43,953   adding 'AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py'
2021-07-29T18:03:43,954   adding 'AdaptivePELE/freeEnergies/calculateDGiterations.py'
2021-07-29T18:03:43,956   adding 'AdaptivePELE/freeEnergies/checkDetailedBalance.py'
2021-07-29T18:03:43,957   adding 'AdaptivePELE/freeEnergies/cluster.py'
2021-07-29T18:03:43,959   adding 'AdaptivePELE/freeEnergies/computeDGGrid.py'
2021-07-29T18:03:43,962   adding 'AdaptivePELE/freeEnergies/computeDeltaG.py'
2021-07-29T18:03:43,964   adding 'AdaptivePELE/freeEnergies/estimate.py'
2021-07-29T18:03:43,966   adding 'AdaptivePELE/freeEnergies/estimateDG.py'
2021-07-29T18:03:43,967   adding 'AdaptivePELE/freeEnergies/estimateDGAdaptive.py'
2021-07-29T18:03:43,969   adding 'AdaptivePELE/freeEnergies/extendTrajectories.py'
2021-07-29T18:03:43,973   adding 'AdaptivePELE/freeEnergies/extractCoords.py'
2021-07-29T18:03:43,975   adding 'AdaptivePELE/freeEnergies/getRepresentativeStructures.py'
2021-07-29T18:03:43,977   adding 'AdaptivePELE/freeEnergies/ownBuildMSM.py'
2021-07-29T18:03:43,978   adding 'AdaptivePELE/freeEnergies/prepareMSMFolders.py'
2021-07-29T18:03:43,980   adding 'AdaptivePELE/freeEnergies/runMarkovChainModel.py'
2021-07-29T18:03:43,982   adding 'AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py'
2021-07-29T18:03:44,195   adding 'AdaptivePELE/freeEnergies/utils.cpython-39-arm-linux-gnueabihf.so'
2021-07-29T18:03:44,204   adding 'AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py'
2021-07-29T18:03:44,206   adding 'AdaptivePELE/simulation/__init__.py'
2021-07-29T18:03:44,210   adding 'AdaptivePELE/simulation/openmm_simulations.py'
2021-07-29T18:03:44,212   adding 'AdaptivePELE/simulation/simulationTypes.py'
2021-07-29T18:03:44,221   adding 'AdaptivePELE/simulation/simulationrunner.py'
2021-07-29T18:03:44,223   adding 'AdaptivePELE/spawning/__init__.py'
2021-07-29T18:03:44,225   adding 'AdaptivePELE/spawning/densitycalculator.py'
2021-07-29T18:03:44,226   adding 'AdaptivePELE/spawning/densitycalculatortypes.py'
2021-07-29T18:03:44,233   adding 'AdaptivePELE/spawning/spawning.py'
2021-07-29T18:03:44,235   adding 'AdaptivePELE/spawning/spawningTypes.py'
2021-07-29T18:03:44,236   adding 'AdaptivePELE/tests/__init__.py'
2021-07-29T18:03:44,238   adding 'AdaptivePELE/tests/testAdaptiveSampling.py'
2021-07-29T18:03:44,241   adding 'AdaptivePELE/tests/testAtomset.py'
2021-07-29T18:03:44,242   adding 'AdaptivePELE/tests/testClustering.py'
2021-07-29T18:03:44,244   adding 'AdaptivePELE/tests/testDensityCalculator.py'
2021-07-29T18:03:44,245   adding 'AdaptivePELE/tests/testMD.py'
2021-07-29T18:03:44,246   adding 'AdaptivePELE/tests/testMD_CUDA.py'
2021-07-29T18:03:44,248   adding 'AdaptivePELE/tests/testReporter.py'
2021-07-29T18:03:44,250   adding 'AdaptivePELE/tests/testSpawning.py'
2021-07-29T18:03:44,251   adding 'AdaptivePELE/tests/testThresholdcalculator.py'
2021-07-29T18:03:44,255   adding 'AdaptivePELE/utilities/PDBLoader.py'
2021-07-29T18:03:44,257   adding 'AdaptivePELE/utilities/__init__.py'
2021-07-29T18:03:44,258   adding 'AdaptivePELE/utilities/clusteringUtilities.py'
2021-07-29T18:03:44,259   adding 'AdaptivePELE/utilities/conda_deployment.py'
2021-07-29T18:03:44,260   adding 'AdaptivePELE/utilities/generate_topology_object.py'
2021-07-29T18:03:44,262   adding 'AdaptivePELE/utilities/synchronization.py'
2021-07-29T18:03:44,267   adding 'AdaptivePELE/utilities/utilities.py'
2021-07-29T18:03:44,269   adding 'AdaptivePELE/validator/__init__.py'
2021-07-29T18:03:44,271   adding 'AdaptivePELE/validator/controlFileValidator.py'
2021-07-29T18:03:44,273   adding 'AdaptivePELE/validator/validatorBlockNames.py'
2021-07-29T18:03:44,275   adding 'AdaptivePELE-1.7.1.dist-info/METADATA'
2021-07-29T18:03:44,276   adding 'AdaptivePELE-1.7.1.dist-info/WHEEL'
2021-07-29T18:03:44,277   adding 'AdaptivePELE-1.7.1.dist-info/top_level.txt'
2021-07-29T18:03:44,279   adding 'AdaptivePELE-1.7.1.dist-info/RECORD'
2021-07-29T18:03:44,317   removing build/bdist.linux-armv7l/wheel
2021-07-29T18:03:44,624   Building wheel for adaptivepele (setup.py): finished with status 'done'
2021-07-29T18:03:44,648   Created wheel for adaptivepele: filename=AdaptivePELE-1.7.1-cp39-cp39-linux_armv7l.whl size=1711952 sha256=8ba47dab67ab6fbd1e1bd022bdee1d4de408ec335fecc88108e7a3d295f378e9
2021-07-29T18:03:44,648   Stored in directory: /tmp/pip-ephem-wheel-cache-bccxumht/wheels/64/37/2f/3bdd80bc0047b4d462fe242fe77a3cc1d4ca99a5e39222bdf6
2021-07-29T18:03:44,662 Successfully built adaptivepele
2021-07-29T18:03:44,724 Removed build tracker: '/tmp/pip-req-tracker-_1jb3gio'