2021-07-29T18:36:27,376 Created temporary directory: /tmp/pip-ephem-wheel-cache-fbu1ds39 2021-07-29T18:36:27,379 Created temporary directory: /tmp/pip-req-tracker-g5854jfr 2021-07-29T18:36:27,380 Initialized build tracking at /tmp/pip-req-tracker-g5854jfr 2021-07-29T18:36:27,380 Created build tracker: /tmp/pip-req-tracker-g5854jfr 2021-07-29T18:36:27,380 Entered build tracker: /tmp/pip-req-tracker-g5854jfr 2021-07-29T18:36:27,381 Created temporary directory: /tmp/pip-wheel-xe1suciv 2021-07-29T18:36:27,420 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T18:36:27,420 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T18:36:27,421 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T18:36:27,421 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T18:36:27,421 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T18:36:27,424 WARNING: Location '/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T18:36:27,425 WARNING: Location 't/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T18:36:27,425 WARNING: Location 'm/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T18:36:27,426 WARNING: Location 'p/gemmi/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T18:36:27,426 1 location(s) to search for versions of gemmi: 2021-07-29T18:36:27,426 * https://pypi.org/simple/gemmi/ 2021-07-29T18:36:27,426 Fetching project page and analyzing links: https://pypi.org/simple/gemmi/ 2021-07-29T18:36:27,427 Getting page https://pypi.org/simple/gemmi/ 2021-07-29T18:36:27,429 Found index url https://pypi.org/simple 2021-07-29T18:36:27,698 Found link 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https://files.pythonhosted.org/packages/5d/86/6cef13dcfd9b5f3101e826f35fd54088942496489b9307480185fe63d2ed/gemmi-0.3.2.tar.gz#sha256=b626f55807abf58f2510c90bcf383af50f132bb2a9ff1d6a8a53ac50a591a217 (from https://pypi.org/simple/gemmi/), version: 0.3.2 2021-07-29T18:36:27,703 Found link https://files.pythonhosted.org/packages/af/9d/ce0bdf384249da75e4584b624f5a144366a3c8eceff2dff19236aff08dd1/gemmi-0.3.3.tar.gz#sha256=c8de0da30464e49532af856e47b3815df9c042690169a85dfc3fac7c83066251 (from https://pypi.org/simple/gemmi/), version: 0.3.3 2021-07-29T18:36:27,703 Found link https://files.pythonhosted.org/packages/b3/b8/1f41f9a0849c5011cb890f89b6548c8dec1b52ee4bf28cb0ebe3728016e9/gemmi-0.3.4.tar.gz#sha256=94184ef130c341b67eddf0fbab41b57d47c36ab3a53088af315065b50e7c117c (from https://pypi.org/simple/gemmi/), version: 0.3.4 2021-07-29T18:36:27,703 Found link https://files.pythonhosted.org/packages/f4/f0/f4cd4d29e53707efccb2e6d4b2c185851dc1ef02f7aa041b9803fb1a8590/gemmi-0.3.5.tar.gz#sha256=f78b590b4594ec016dcf8b3be10b5eb23e54e2b19dbc73647da9bbf15ac4f824 (from https://pypi.org/simple/gemmi/), version: 0.3.5 2021-07-29T18:36:27,704 Found link https://files.pythonhosted.org/packages/39/b1/9ca0ad395150af606cf85a2e45c2dfaab02492d36ff264efdcf25f7479c1/gemmi-0.3.6.tar.gz#sha256=b290c9ebf03555ba308f9e65e9eaf31ae40acf89e7d9a4b5536e0096dea7d3e2 (from https://pypi.org/simple/gemmi/), version: 0.3.6 2021-07-29T18:36:27,704 Found link https://files.pythonhosted.org/packages/99/ff/0da30f43421b952256ba77edf0eee9bc0711715a4687489ee33037a1f132/gemmi-0.3.7.tar.gz#sha256=8461d66b7bf033cb20d9b62a5fe65474de09e59b90702651f2317ca1e578f451 (from https://pypi.org/simple/gemmi/), version: 0.3.7 2021-07-29T18:36:27,704 Found link https://files.pythonhosted.org/packages/06/4f/5e2e02aa93bcdf27b54f810ecda6e3d08b962d8ef27c9fa731f04523dc80/gemmi-0.3.8.tar.gz#sha256=95a3baada9756ab68f1061161fdddbe3532ffd7c70c2271256f51781e11d7dc2 (from https://pypi.org/simple/gemmi/), version: 0.3.8 2021-07-29T18:36:27,704 Found link https://files.pythonhosted.org/packages/c0/4d/7567aed9911e6f62021508d72deae27d7f1e5dcb41032c4d642c01158408/gemmi-0.4.0.post1.tar.gz#sha256=fe4aab685772be9002ae047c86282061a54a8472c41e71dc7f4e2426a26a7626 (from https://pypi.org/simple/gemmi/), version: 0.4.0.post1 2021-07-29T18:36:27,705 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f5/da/3fb440c7b946febcc4fdb3f4928b1e93b2627ccdf26d69962f3c05b8f077/gemmi-0.4.1-cp36-cp36m-win32.whl#sha256=7fd237c9df1a14c4fdb3ac71999e492d2c704924d99cbc3c56e2b3068e6732cf (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,705 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/88/8c/72cd48a1e89ad92f24e67d15545b9e3f478f256fb4729dbbb4985a0efe2f/gemmi-0.4.1-cp36-cp36m-win_amd64.whl#sha256=0e787ecd22313c52bfeae3408a3de06ec676e793822a245886bccfe5bd8cd79a (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,705 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cb/84/0162cc2197241200740655ebe6cfd33342ddb152feca089f98aab91f56b0/gemmi-0.4.1-cp37-cp37m-win32.whl#sha256=f818934948b41087b9e2d1fb4a14db70c822f6cf153658a649d607d098d9bfd1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,705 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/3a/c69ec458774b60d61a929ac2357d0b9c0a0b5187e55cdb75e138cefee2d3/gemmi-0.4.1-cp37-cp37m-win_amd64.whl#sha256=81d236d7ffe05be29cd3480c2821276337f661e6fcb0881c5e32c360b7be7378 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,705 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c2/a2/55410bfd6be3391475c2a005fcde251f843e0d117707dacb07bb880d2b21/gemmi-0.4.1-cp38-cp38-win32.whl#sha256=980c890ffc5034940e756a887670406939f3a95ce60493ab98cd8f2e4f2d7830 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,706 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/a4/361f66459b444340a29c1dbeb81918dccfab580f92752571a361b53c80fe/gemmi-0.4.1-cp38-cp38-win_amd64.whl#sha256=28de811e9a1c142a311cb4ed52f367788d9911de9cd17ad84566afae1ce97b15 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,706 Found link https://files.pythonhosted.org/packages/2f/d5/4ca93e1691bd8cb2d1e06ce4ff816eca300aa4e09416caf45bbb6451f013/gemmi-0.4.1.tar.gz#sha256=65f36f61e1b88913ab697bfb846553e15398ca27fac952a1d386a5d15779951b (from https://pypi.org/simple/gemmi/), version: 0.4.1 2021-07-29T18:36:27,706 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/22/03/599bf3752327fdbc408133daf5d6a7b950d72c4d81f20d8d3b2d8e95be85/gemmi-0.4.2-cp27-cp27m-manylinux2010_x86_64.whl#sha256=2c3fe451e560f0cb316f425afa8f95ad0138c5e14baf15bad8add3b16a002820 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,706 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/aa/f03b573d7333211fda34ad2c7dddbb4b7310fcf9caf7e938318208819049/gemmi-0.4.2-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=f7faad54418319bc8ff1b7e5b1cb4f4cbac4653f4edf528e911f040f5c9ce012 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,707 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/34/eb/d55b627cd8cb0f9bd3fc076afdd8b3b999316d6c4c24b6b703b97730ffab/gemmi-0.4.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=65d303507bbedb01265a59e33f9c087957fbcffe240366a802e240fa032eca1c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,707 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/6a/fe1a65806633ea2129507b0f8b4034afdbf383e474a12152839ee50a52eb/gemmi-0.4.2-cp36-cp36m-manylinux2010_x86_64.whl#sha256=09fd610301a230cb7890f2d7f6dd7ae98ead9bc59f3fc37790f8a95dd4017eac (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,707 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/59/a4976acb0891bc600c161f08c341666daf419885f07a105e335e1aeeecb7/gemmi-0.4.2-cp36-cp36m-win32.whl#sha256=7143c3b674f428a420ac13d72fb0d327e3c842f014e2dac1fcf18453d3671d6f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,707 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/f9/0e3c3e3cbb2116fa23a1fe815542a971a5775cd7ada9d02ffd5d58fcde85/gemmi-0.4.2-cp36-cp36m-win_amd64.whl#sha256=326b19d2fb0b8714f6a4631b3e0e2283b11424936cb994d0a330d6a70cc56986 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,707 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/95/85635908935957b4ccc1700dafdcd0c309e00a4a3291aa7a8d6c65a5f089/gemmi-0.4.2-cp37-cp37m-manylinux2010_x86_64.whl#sha256=d61e759f705dc2fd16c94947550a258668ec6e2d4085addac6dc5d746f308149 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,708 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bf/5e/2dcb2454003be5505eb7a75b5eecde74486d2a1bea2f189fc30c749076e6/gemmi-0.4.2-cp37-cp37m-win32.whl#sha256=e9eecdc0afdf6d05b0b668462fc45f48c32dcb22a153e6138ffd590dc220b957 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,708 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3c/8d/055161b661f3dcebbd1cfa3c55ba02ab7f434d87147481b3566080a4ccac/gemmi-0.4.2-cp37-cp37m-win_amd64.whl#sha256=18a9f24cca2ad93f5feec70abe64eb75c1547509e4530898e4b5566696ad26a1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,708 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ce/82/a45cb30c350b56f4dc628986b84b91310b88e1b2ac73ae3b37c3a1ac8585/gemmi-0.4.2-cp38-cp38-manylinux2010_x86_64.whl#sha256=c922d52b726ee554dfcbe8e01af11bb32b2ddbd9d6377ceb7db836b5bf2b15b5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,708 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9a/39/784a739b8d83175667ef1cc85a53acbe79b9437292031225b3ed552bc035/gemmi-0.4.2-cp38-cp38-win32.whl#sha256=5b586c704add91aa59ca14cf7f03142512e9785329b42a8cb9007453548511e9 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,708 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/62/8911a99982bc95e629f41a7096f0f907cf4b001ed6c0087e0a2763c943e1/gemmi-0.4.2-cp38-cp38-win_amd64.whl#sha256=06c0efb154804fab1c74c816bde974089e0653fb58c8f3c0ad9795e7c5678217 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,709 Skipping link: No binaries permitted for gemmi: 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https://files.pythonhosted.org/packages/b7/cf/5a9f3534db7e32658104b69e8a631c4fcf9a4bff7b8d38dca572bb6ed5d7/gemmi-0.4.3-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=27b97d8d1e5d1490d51a39c07ebc7640dd29b35b058bacb06db9b4ab21b0c118 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,709 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d4/8b/c55499a4d0d2a155c4c4ce220a2a942f0026909f4ec849609fc6688eb5a4/gemmi-0.4.3-cp35-cp35m-manylinux2010_x86_64.whl#sha256=182acd66e655a5cd5efd233e4baa0e1c153e8e15053767d2b3e6b5776f57176b (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,710 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c3/c4/d3239cd44ce93e14454e2f6596a723f5245776fe822238ac0473ef6d81d4/gemmi-0.4.3-cp36-cp36m-manylinux2010_x86_64.whl#sha256=4875dd21b03ce53882a4569978d0c7f4db1f9984605721989da6836835a24ff6 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,710 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/b9/4821a0951160692524e8394629b952337ad0fbe111b5cf26dc56a9c8e59e/gemmi-0.4.3-cp36-cp36m-win32.whl#sha256=65466099cb7f64117693b55e2b6c41d834a3c7651bfbce0890bd8c9fb7b70f05 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,710 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6a/52/e2813c31a8d080649737308823e85d17324defb683a61e853beea00ed63e/gemmi-0.4.3-cp36-cp36m-win_amd64.whl#sha256=f4ff57170a1acd028b3bfd68d7228bf930855d2d3b2631a9eea4e01602ef3fb2 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,710 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b1/91/659f69913777cc1fa590f25f5831d9803c9681923690e426af680d9380cd/gemmi-0.4.3-cp37-cp37m-manylinux2010_x86_64.whl#sha256=0e52c81f36d45b51055c0ab62317f72e136a86b9c4ca3ea8045eecaace7b09e5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,710 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5a/c9/e78fbd8a8d48f13c9da4e6afc4941bbf40142e6423d487335f8fcf46e2db/gemmi-0.4.3-cp37-cp37m-win32.whl#sha256=5940874fbbc5dbf350789d03e91ba10ed902ad9d3321030a524337e437c8409c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,711 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9e/6e/0ab2f8a07c42a54d6e6fda65549ff13a081c94601f084f795a380a8f14d2/gemmi-0.4.3-cp37-cp37m-win_amd64.whl#sha256=40b926cfc1e03963c4d19455dccce11daf9350b1ac54210608b24936e25bb833 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,711 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dd/43/aa263331953f26ee8cf573129576a87252c4667686b04280e2e2d46a1ef7/gemmi-0.4.3-cp38-cp38-manylinux2010_x86_64.whl#sha256=533c17851d4f2d9d5207cfe8b97de9e7fd42bbf95995e9ee5044c6ce59daae6d (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,711 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/37/dd827724ae053469469c4dc3f050b5b16093195fa50030a202a593fb380a/gemmi-0.4.3-cp38-cp38-win32.whl#sha256=9b13da898e62666249251a358f10087ffdac2bcf8734bb1780b54fda263babc8 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,711 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cd/15/4460162edf9aea5c568b6fbdf2b55536800b32e639064db8fb112c779edf/gemmi-0.4.3-cp38-cp38-win_amd64.whl#sha256=e70501c35e56ec6dafd8a2d64d74a3e5cf32fc87c5934d5ca68ad077bb0fe042 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,711 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/35/e8b97d567e27090876330931af7a5f097aed5387067718a25a9d4225ff82/gemmi-0.4.3-cp39-cp39-manylinux2010_x86_64.whl#sha256=f2b50d47148bb02c0cade07d936c27efd56aa192b871cbd05c50e815f0f5189c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,712 Found link https://files.pythonhosted.org/packages/b7/6b/b4c5c2c12da58813f2478fdffac17d86aaf46c570b6f8b42eef9778d8180/gemmi-0.4.3.tar.gz#sha256=dd1f9d3b5ae06593f15e3093db5a41e6d4609307888ed3b25388087eae7ad9d3 (from https://pypi.org/simple/gemmi/), version: 0.4.3 2021-07-29T18:36:27,712 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/88/e074befd61f9abbc617edd24283bf642869882c023b2da5cf78bbbe8b967/gemmi-0.4.4-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=06ac6acad283b6d6181c337cc9cbd24ab4ad745b51da2e55ed1ef6973d0b5af9 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,712 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/f0/47da82d4ba10f1d15a212d74c9d712158b994bde8115f9d6d01f5c4ebe6f/gemmi-0.4.4-cp27-cp27m-manylinux2010_i686.whl#sha256=8a18033708701fa6c866fef000142a2e2ae14246a8995308d0369e3c13fe65fa (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,712 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1f/b6/28f2a87d7e189fe9604897e13fd05a881a7933d7d293fc04efdbc6ad436b/gemmi-0.4.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=c68986b7542e8bd4047437fcf378e991ad90edeb6f89079d740225c994bc51dd (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,713 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/89/06/0c6eda981f85fb5f1633d19c8ce0cbd2d8fcf5677b5d563740241737ac90/gemmi-0.4.4-cp27-cp27mu-manylinux2010_i686.whl#sha256=98dff07c2c7815462abadbfc17fbe76d772e9e245fcef055d6288d03ffdb3c9f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,713 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/66/c696b84cab12dcc9c41f4d59eb767ed681359a0eafd331d9dfe5bab42b8c/gemmi-0.4.4-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8d8c82d510af39a126b398da03fe4ca475329a253bbf03dfe09b59d78c5e34e9 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,713 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1b/ed/d6745f20401fa9383ec0f166120c8f1d569795d5dc75601386e9811e587e/gemmi-0.4.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d43f4e79bf7b9a069ac8874c243b64840c3311e19c0fa273ad24d136c84e045b (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,713 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dc/18/0b5127d8f84979f371d588a323047483a22604eadb457ce9cee709895f29/gemmi-0.4.4-cp36-cp36m-manylinux2010_i686.whl#sha256=949eaec9199f5c503c997f91bcf1dd466e2ef6f1231367bf9c2a124d994e6226 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,713 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6b/62/eea9c84d0e37df89b34c03b562522556419c080462c92eede3ccb9697625/gemmi-0.4.4-cp36-cp36m-manylinux2010_x86_64.whl#sha256=c53cba8d1391021ba4798991109659c10bedaf8ee81164fd8b13fb55a4d86a9f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/62/78cbc5c9e8f68a84547621a5d42ae22560c0215f918a6c8e007835a59e8a/gemmi-0.4.4-cp36-cp36m-win32.whl#sha256=c3deb52d2b7f72db23ae5c5cb9d01d0fde1d26b736629b68846ad5421db1a20e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a8/86/7258f7f4797308e3750c30ec16d9850dac8d0e865fc1d2fcd18e345ff82d/gemmi-0.4.4-cp36-cp36m-win_amd64.whl#sha256=c692693b0466895dc0cc172aad70e6d657435a161f9c7fc8b49dabac8a5ebb06 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/44/c8cd594bc8075226ec1d38c330eb412650e75d9899db7c160b96b788fe5f/gemmi-0.4.4-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a4dafdb7d1068d7ae205d89409e128a0778c197a23f22472440371d8290c3592 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/68/832c4428629c200710b73ab360bbf3cbbe7bdff439618e06c136efb083a4/gemmi-0.4.4-cp37-cp37m-manylinux2010_i686.whl#sha256=0e10dfcbb8f357af4865cd9a4b7f8429ac955fc1ec13ab309fddcbafcca07b5f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/02/b1edf3ca6e2bbc04d5bf9223ca53571a6dec25156b708bc4303352f4f8b1/gemmi-0.4.4-cp37-cp37m-manylinux2010_x86_64.whl#sha256=ccb6e07f90b7e7fdf60ad6785b1c1d00f40d08e8f017a892273f550498b8f4c2 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,714 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/13/2f/37bbe81cdad4ad391102f85f660dddc3b9c69a9babb79edf7a546bb00a34/gemmi-0.4.4-cp37-cp37m-win32.whl#sha256=805ceab04ae4a94fcdc6e6570eb43f62e31d8625e22178e6410ca91cd8b9154d (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,715 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e0/3b/624099e50f36dccf6adf402c5c30f8aa788a29e7a7daa0814ffc2b029438/gemmi-0.4.4-cp37-cp37m-win_amd64.whl#sha256=d248cc41378cc2222823fb361c66cb1b54f8bbffc3a86ce5e25a81a6d2747388 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,715 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/e6/54a757bb93d5e818d3c2a9a2c78c4ce2d929831e82248e2bbdfc8b83a5a4/gemmi-0.4.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=db1c7347a999d654491436314f6baade4df7e19de1a4593b10b96ec9739868ee (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,715 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/61/12/f0e468abe27ca297d48739409f91ae7c8316179eb46e7d6566ef6f8531f0/gemmi-0.4.4-cp38-cp38-manylinux2010_i686.whl#sha256=b8a49aed16792fc6449076847b207af60527bd8c5ed35941f806310b41ff09c3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,715 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e3/25/f86bf28f87680c7acfc0366eaeef544af75c17480777e9572f845b73a9ae/gemmi-0.4.4-cp38-cp38-manylinux2010_x86_64.whl#sha256=9f736fead1ba7d617f1a99ed0d034c9352df8df285e67fd29e201abd9b887da3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,715 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/0b/5ed3cfbd0bc92abf4bed4dd765ed5c3aa639ff2500abe9855c6178f4a8f5/gemmi-0.4.4-cp38-cp38-win32.whl#sha256=095e7da75761fe455e338e0e483757c7d75a49f084003987a5024a829b6d0c26 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,716 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/54/78bf9f5257e928db4a5c3464ac0258b2e7c8ddfb01103dd2278bfc996a1c/gemmi-0.4.4-cp38-cp38-win_amd64.whl#sha256=c5214191d65e4fe2ebd7581aabfc431b2aca113ead63040cbd9bacc7148d10f2 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,716 Skipping link: No binaries permitted for gemmi: 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gemmi: https://files.pythonhosted.org/packages/c4/14/73eda6090c1a6062c6428762e3b722856dada25bfff509532ccd1b039c87/gemmi-0.4.4-cp39-cp39-win32.whl#sha256=fac3841b4db5f7b2f9aed5fd4cdf2021e01173a5e27611c1411752142c9a4c46 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,717 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/84/f7/2b4825646ab5c6afaa50858c97267cbc2b234b6e99a43d956924c6518f0e/gemmi-0.4.4-cp39-cp39-win_amd64.whl#sha256=2a87669bfc6e6c7d6286bb5c98a088d1ba16a7750499f4b8a40d61325e1ae7db (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,717 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/34/8bdb8d15ead8117585bec881c80a62983fbd74ebc1b08bf164f15d5f97c7/gemmi-0.4.4-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=f1fbbf7470e4ec8e8c057bcc2f16be115c9a5bd7b4480bbb5f03381076bca1b4 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,717 Skipping link: No binaries permitted for gemmi: 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for gemmi: https://files.pythonhosted.org/packages/68/be/1dbdfd3831075a2920c4c3cecb9178dba6f270d77995c773d65a8e16a701/gemmi-0.4.4-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=6435d1be8aac19664dea1383f8e7f5627eefc1a23b68bf3d6379ca540297fe36 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,718 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/7d/3c1fab59be120cdfb4d5f2500b58864c55467381533564babcd43f8fd012/gemmi-0.4.4-pp37-pypy37_pp73-win32.whl#sha256=fc6da7524c20947ac7c98923b039e6049d13ef3571140c829e90098bafd4279c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,718 Found link https://files.pythonhosted.org/packages/50/93/11e3197ee0d201256c63faca3023f68eb50823f4f0d3dd15c537fce89cc9/gemmi-0.4.4.tar.gz#sha256=308032ecee13391e4638a59519cc766c18b60ee3cd606be6a32e386d6f42ad99 (from https://pypi.org/simple/gemmi/), version: 0.4.4 2021-07-29T18:36:27,718 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a3/89/62715a67fdbec732441eefb9ab39bd62f7f43334ac4015b791b977be68c5/gemmi-0.4.5-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=e1c4a7ebc11bda58fe37e3122014e6b759aa304e060a418b9d94e7fd7ad63a4b (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b5/39/c38fa021a44e9343cc886722365d453cf364e2a5a67c285bb328b20ff540/gemmi-0.4.5-cp27-cp27m-manylinux2010_i686.whl#sha256=fdb7369a6239325cd006b385e39f0b03fd0ae859e3836364448279b45f309f64 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f7/18/b755993b408896b60e4852f9107331006a1b99c83926a948c9b4b27aab32/gemmi-0.4.5-cp27-cp27m-manylinux2010_x86_64.whl#sha256=920123a13367dc00b75835be38a88cb4ff58b73075f0455267b9d89e294e205f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/57/51/0c582b5adc6cb799a6b87766c498fe7144f792cba2c70b6e4ff31542e874/gemmi-0.4.5-cp27-cp27mu-manylinux2010_i686.whl#sha256=0c7121d24a39f704f2a714b5242bba2f492101ddd8aab8bb2ba6a2b7bb70a261 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/a8/12c264b0b6d417ac551fdceb2fd5ac3e0bb2e2a83f4931c8f86135b2df4d/gemmi-0.4.5-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=5b5b40c5289affee9549ce07edcdd7e2757f0852462b2c25847c5a2769f22d02 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/b2/660f35b80809bd4f75f2b8f5dd356f1b3b3ee6b999e6811743c68c0dc308/gemmi-0.4.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=b091810784901da3db22eb8706f4b1a6dcc6b562a1178db3fd5a62ee80055832 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,719 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/55/44/f25c57803987a15bea2c24d638da47e8e778fd53acb194e1757523778938/gemmi-0.4.5-cp36-cp36m-manylinux2010_i686.whl#sha256=6dbb7b44a65b6803eb0b47c0bd842c9437d7c1f35f2313f8d3714d4b59fd6cce (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,720 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/09/9d/58f15c2552bfc071f973eec23499c9d6a1b8dc0ce60c7997e49a7402ec91/gemmi-0.4.5-cp36-cp36m-manylinux2010_x86_64.whl#sha256=a2c2f6058ae7c4886953bf86523dc47481db3ed7e1f3e9173716a3ee839eafcf (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,720 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/f0/bfa6c95e9071a4061d60c1240f6d5c1dccec497bfbc4a78e9dd0d5d261fa/gemmi-0.4.5-cp36-cp36m-win32.whl#sha256=04d83f14868b96d94c28552e29a63cff5ebd2dcc3cfaf187d23f4a92dd3ff5ea (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,720 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/11/448e121ac8ac7217b6f7cc570a6d26bc51d27858c78bc533b6c2a7640b8e/gemmi-0.4.5-cp36-cp36m-win_amd64.whl#sha256=6e8a0fc30a5ff29275df00f05a0e2c2a835ec11281f4f596cdbf6496957dcaa7 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,720 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/72/77ea0f799d73d54999181ddd615206492343ada2617996f7169acab168ec/gemmi-0.4.5-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=6e31f1d82cfa6efef5f41acf9e42aa79033ceac7ce43b3506b4fdec4768058d7 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,720 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/0b/52ea2dd8bb3d311e441674a79cee4dd490140865595473cb222096c8cdc4/gemmi-0.4.5-cp37-cp37m-manylinux2010_i686.whl#sha256=4585db43804da417733695d772fda639c291b7c0884782ecec4d1fe9b18ca7a3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,721 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/0d/a91f70f43b8a0732f82739b3abac31fc6d363c229395308205b87d383045/gemmi-0.4.5-cp37-cp37m-manylinux2010_x86_64.whl#sha256=2092e41ec84a4a46aa524d6d7757c8a4a605079046fce66fb54dfb8c0e5bf7d4 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,721 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/72/1e/57b1c8dd3d6b918198328579e69ce68f7b0df2d7021fe9b7dac55d7e9cb6/gemmi-0.4.5-cp37-cp37m-win32.whl#sha256=31c587ea6e759cbab910b61fca9915cc5f43b57ffc7b8f476aacff50a4e85fe4 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,721 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/54/26/3683d8c49bae1ee13b96911f28006a90163eb65778695c2e67939c4bc37c/gemmi-0.4.5-cp37-cp37m-win_amd64.whl#sha256=a699bd63fc23a69491e07380a4dc7ffe4413c8c2d713f47e47fda375611491f1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,721 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/69/e1/b12f90c4962282c329afdc1a4c9cb7475dda068ec1e0a815209010621c83/gemmi-0.4.5-cp38-cp38-macosx_10_9_x86_64.whl#sha256=4d631c4d619a2d541fa782dc4cd80d890f9ab035f752ef3df6382c9410c8f445 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,721 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/49/90/276372a683c5687081103062ebc8e535181d9eff9ecf4eee42c9081be19f/gemmi-0.4.5-cp38-cp38-manylinux2010_i686.whl#sha256=856373e20c79a00d584663b382f94c04f4420680ebb110bc4a53c2c0eeb9e0c6 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,722 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/e5/da6409d8b6d9850036c3ef87e460336c6231b1e0c3bb95f34dd0aaf3836b/gemmi-0.4.5-cp38-cp38-manylinux2010_x86_64.whl#sha256=623b9c2ae4d79d5e7a884e77fc280a27548ca9e38f48b7bae2b0f34173bb1f68 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,722 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/8e/1764f1045f32c0bfb1d2901ac8b75fbe97e1e392b355ee9af815cf38ef57/gemmi-0.4.5-cp38-cp38-win32.whl#sha256=157f6912317fdf5d67f357295791f6bf09c65807a32869bfe0e727284bc292fc (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,722 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/2f/73a7b609eac9a9c71e7bff951c2e100e407da14c5a214dc18eda13eb4141/gemmi-0.4.5-cp38-cp38-win_amd64.whl#sha256=95d0f2513b337665e83c5c597b6e173f4652aa3a9020dd6d8dec354ef3384028 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,722 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/12/d4/4208b738e30605318d8f26090bc4380846040f98ded22271e7e4ca46d2c5/gemmi-0.4.5-cp39-cp39-macosx_10_9_x86_64.whl#sha256=22798169f42d28791944b02590495ecbe351f42355aa772f7c3f66bf2b3945bd (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,722 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/af/ce/ab46b8088defeb988d95646598ba860a8a627231198d45ce61a3605ba00b/gemmi-0.4.5-cp39-cp39-manylinux2010_i686.whl#sha256=1922f1bf704a4ec26370cac149de8134a2daff3556196f2e833c1aeeac0e792d (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,723 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/43/2c/663a099339e2bc8294891757038496434774ac16c65a2798cc431e206a55/gemmi-0.4.5-cp39-cp39-manylinux2010_x86_64.whl#sha256=801817242e73e7941c9e3f1279f55d3b6e29bfe66aa3585347287198133c1460 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,723 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/f1/13a68d2f9a11b3664e0e1de4d79326cd67862bca4f5c49ee4bef2514b9db/gemmi-0.4.5-cp39-cp39-win32.whl#sha256=9905d8f5f4e8f51c58c4a66d6b925e2896e9884e7cb2ef88d5b2188d3c9d163e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,723 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e5/82/f72b3028dd1a01369dab40d8943011dd96bd56d7d019b848b9545345a50b/gemmi-0.4.5-cp39-cp39-win_amd64.whl#sha256=8ea3999c416085cbbb373a30bde468e215c3db0c2506a0df71700a7a3333c50d (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,723 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ee/6c/c0b2f77136489e9aada94adf29c586fa51e982d63cb162b71f598aa52e4a/gemmi-0.4.5-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=38d0270275c0f846ebd8af070a829fde935553fc0b9234a34a424afcf514aa61 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,723 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2b/62/0b7d622c7961f0df3818fd1e56d398c7c723ddacb9eaf864d1c729fc8e22/gemmi-0.4.5-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=551e99ff2f9ee59edd78e7b28cbf13e123aeae2b698d7eac3464db0e7a2298b1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,724 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5c/b1/c48b5b6c866bc104ad5ad0667d4133d9185a982928235270332fb8a21436/gemmi-0.4.5-pp36-pypy36_pp73-win32.whl#sha256=904dc646c8452ed4db7af53ec85aa3920bf3198bc58ee7ddead55d5368c79c23 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,724 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/13/721e4b76e5db2f9549ba22f0c42181d25c936a9a7d17ad2640aaf91ee38e/gemmi-0.4.5-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=9faaa0bdf8c884bb4ae6d765995dd61ddd1592644aa86fdaab8d3870622db4b5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,724 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/e5/ac1318a6fdd197e1a1b039658efb59afbd1abbb44ea9789fd0c6b9b49724/gemmi-0.4.5-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=e1a09762126bad2f4aa0e9b3f68459ab1205f244bd4d306dc9b4ea8f9290e03e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,724 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/bf/c3c250e76b72ececf8b9b4c46c5d53bf2f321a97137bda5c791061b2eb4d/gemmi-0.4.5-pp37-pypy37_pp73-win32.whl#sha256=9fd2954c6eb5b6612096bc315508a8bc79e03c84b924d4c68f8a3e82f635dbc3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,724 Found link https://files.pythonhosted.org/packages/cb/de/3009e2c600cdface74bc3cd3a61abe573a1795494884caabce654f7d9b67/gemmi-0.4.5.tar.gz#sha256=3add3d4a24237b0d80499aea92d21d361aa1603a8fed01f076815321a2a1cf58 (from https://pypi.org/simple/gemmi/), version: 0.4.5 2021-07-29T18:36:27,725 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/fc/4278f6a11da18b4797458633032cb0a7e8babfd94e69285761ede60f972c/gemmi-0.4.6-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=083116a92e0fbfa4373de32be3e43e01ca1d1e6be86b7c6ef173c3ea553861b5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,725 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3f/2b/9f4b2fa9e86ad506c5d66d1e6eb2b2e71fa2895f2675250f0a8f314ad322/gemmi-0.4.6-cp27-cp27m-manylinux2010_i686.whl#sha256=1473bcd63ddc6df187c0f86d8a6e868525b4280b1c66f6f50c1ab25d5e722393 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,725 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b6/7f/10630937c391f27987c18f19aa42c4594ddb39e0b0f5302f0dfec4aa4428/gemmi-0.4.6-cp27-cp27m-manylinux2010_x86_64.whl#sha256=a9447f119c5e0d27ab9caf0926837c973b062d5949ff885bce1adf813bb77514 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,725 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d6/fb/798923bf3741e91253a24491049b57590469a7f50cb3cc9253fcf60945d0/gemmi-0.4.6-cp27-cp27mu-manylinux2010_i686.whl#sha256=82b61383fc8481a5fde3260b026f238c625515a1ed9f302dc5a662bedd4a1551 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,725 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3d/74/b4ea05a4bf76367e0ad27b4c5bc02c2ed31c32bdd2386378d72c90175c59/gemmi-0.4.6-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=e0ef1e691b9069a30e1fe0570d4ea511e6699c759bc42281f332ac4d6629902c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,726 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/10/23fa05a07b6df83608aa59cc238f74e84d8058ad2ae310bdbb47d1c81f85/gemmi-0.4.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=59e6a23c19f68f57a352bde9da0725932d37c6b6aacdb7039a173433b5f57b01 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,726 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9c/55/e8ba86967640ea9c436a8dda39164837d45e7ee5f7fe6688ec9e52ceec81/gemmi-0.4.6-cp36-cp36m-manylinux2010_i686.whl#sha256=a55404ede320c7f1ae9167a07c8f7ff8d3d94bf447a3128620f82bf26a453dd1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,726 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/03/7cd6b99f2d8ce8ac485e7550e476ff0d752b5743486de3a953ba162f8ae7/gemmi-0.4.6-cp36-cp36m-manylinux2010_x86_64.whl#sha256=1865ae6bbab2e2ba60dd2583e97279ab8a792218ce6c66f1d793c44580900cb5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,726 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ed/2d/e80e5393bfaea7be595bcf6ace407e0042b28496e510b38395476c9a7836/gemmi-0.4.6-cp36-cp36m-win32.whl#sha256=bb7e17fafed5a23aeedb8d85d838bcb175353d3c5d105ec808f16599c52e6324 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,726 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/1c/1ebdff39cfc9cecab2445b22e1b480d458c253dac3e9017c3d76451e908f/gemmi-0.4.6-cp36-cp36m-win_amd64.whl#sha256=0fad8b9e630bf333eaa150c38ef5321f1d25f5892e2d72a6250095b41d9831c0 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,727 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f0/1a405fed888d6d3aba90bfcdf11b6e12655202b728ff2a035e3f5ff11297/gemmi-0.4.6-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=a3aabd2b9ef0b9b78b257dcf42d19e5eadd139dab04738ad5809b2ff2148dce1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,727 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/51/51/71162451f2e331bd46c154b2673f38823559e90989d5e5c1196f8fd9565b/gemmi-0.4.6-cp37-cp37m-manylinux2010_i686.whl#sha256=f460efe7d9196a4c739b884589f5db3598735881070d0099a3e3980fd14da1e9 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,727 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4b/29/d5b7a27bad71957f41c644c3c19637f0d9fefabbbc4c501cf6be1eb0537c/gemmi-0.4.6-cp37-cp37m-manylinux2010_x86_64.whl#sha256=c1c06a78d7dbd6806644063ce29e8c2a5fcdfa5af8e60986a0db5e2d03ef57db (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,727 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/e8/506e69e5caaf93daf0e9429f2379a16ff07d39b76916944f492d7fe369a0/gemmi-0.4.6-cp37-cp37m-win32.whl#sha256=2bf2d9f46c4bc5cb5804ca92818b4a025f68c6d1c101e839fe3810f58c2a6ba2 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,727 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/21/cd910ccb94c96cc6608e109eead1645be18715b4699382aae51604464b71/gemmi-0.4.6-cp37-cp37m-win_amd64.whl#sha256=bfcffee0607e0644fe5403b3e327ae0716479466eb04c88987c50d9ff368a8af (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,728 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/78/df/e72a1f1be72b6a3ff8f4def21ec8b31ac56c77bad1b871386fc8028115dd/gemmi-0.4.6-cp38-cp38-macosx_10_9_x86_64.whl#sha256=6dbf6ef26cf0c8d789099c8cfbad5b87d3f740b0adce638c7b5659373db1675a (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,728 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/56/cd/c2fe5e0c0673c734db137d12d45ade2a16de88a68772926ddff4ce230ac6/gemmi-0.4.6-cp38-cp38-manylinux2010_i686.whl#sha256=62a9cb3f4b44beabc38455e70531b202c0fbffe5591678d72a7e1c9b32ea3755 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,728 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ca/08/607d0949bb3e508feb63d71dcb16c8cc54b146d5d020e228b90db69f44c0/gemmi-0.4.6-cp38-cp38-manylinux2010_x86_64.whl#sha256=4827bae4bd2facbc7025a1eff48bbea5b43b68d2868a219ab94acd62f7083233 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,728 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0e/cd/df5f9d994a9b20ea68cc6efb0892011d870db72ec985c77df6298f3ca836/gemmi-0.4.6-cp38-cp38-win32.whl#sha256=f357a0b5e91a1b3ac519ee3ddd9f5e6a7bd5941d00cba4678102567c4558ba31 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,728 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1a/4a/6a4e5db1bdc3be1a1cb6c0c21193d981ea5fa2991058b4ceb7454a9cb520/gemmi-0.4.6-cp38-cp38-win_amd64.whl#sha256=49c6c5c4d851b2751ff69c57a87ef6928beb9c20dd69b109e6416cc91a0401cb (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,729 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/75/1b/306f7baf0785078f809c12c85652537545fc0f3320c914371ffc712f19e3/gemmi-0.4.6-cp39-cp39-macosx_10_9_x86_64.whl#sha256=60c85798ae45505c196dc905b1c742c03ace32369de821aa9066081a7c8234a2 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,729 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/d8/c37aa4a871b46ee81ffc34ffa612f917fe5ec1db64245cb4d050e5d0b827/gemmi-0.4.6-cp39-cp39-manylinux2010_i686.whl#sha256=4a3002520dec779632c877de825ff566ff704973d6cf645dd7d7acf1b8db9116 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,729 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ec/94/8d880d7694f846d9a480b504e4cc4f121055b001e6d2d9070102782bde74/gemmi-0.4.6-cp39-cp39-manylinux2010_x86_64.whl#sha256=39069e5abd4b44345c17008c6241f844c7c1fcf5240193f13dbd98d42e5c0b86 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,729 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/07/ef/2b5075478d09a0c9a688507124642f7e8a99d51d46c6a8dfffc9a9d9ff8a/gemmi-0.4.6-cp39-cp39-win32.whl#sha256=dde1b7a027fc4aeba200a746322a3d9cca4e26f0770498e521c085099c198b4f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,729 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/92/fcae326c99c89b286efcba8cd0c95e125f6ba909c2550ab23ad1e8377cc0/gemmi-0.4.6-cp39-cp39-win_amd64.whl#sha256=c29e9dbb8fb7780a70fd54cc95858d3074f01edbaa3efffe6495d8cd094d4362 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,730 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/24/8b/e39db36831a95644e89dea92bdd451ec6568b4e506ff9c2194cafd38d56f/gemmi-0.4.6-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e1eb99f57b6085a617d5cc839c88059853f6f77dce7aaab6cf5fe021be2b03d1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,730 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/0a/d8cb7a05a6e3f199e0363e61e8cfc369820ea6adc84affc94a9363dec59f/gemmi-0.4.6-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=fa3b71f7fc98ff8b00d089be5955d0f155a48dc6af6f1616af9b5554fb27e86f (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,730 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/53/fa/89eabf0dbbaf91fbfc99bffcb3d603474bc6cd1ef9615e3f3213cd0cfe9d/gemmi-0.4.6-pp36-pypy36_pp73-win32.whl#sha256=3908ec8add86f3cca774bb1e98dcb77fa3c87b5ffc6bc87601dddff296a9abfc (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,730 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/de/a01cc76fdb904af071b74b404daedeedb9fd215609f18e2104e9ec42cabb/gemmi-0.4.6-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=29d4cce47e85736c100d7354c142f0b0d1ba0f7e95e5cf1daefee4fc21913eec (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,730 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/c0/22d5631bb9cf8af0c9a613987e4adaf670730c2af9878dcd49a8503aece8/gemmi-0.4.6-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=628366463a723a97af0506cfaeba4eaf4208609f9ad7410215844e8051471fff (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,731 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/79/86/a7bd5d5c766a719319244373bf8e455bf85993e67230341de9be0b3631d8/gemmi-0.4.6-pp37-pypy37_pp73-win32.whl#sha256=432f3d7ec36725eaeca3a7fe455e99f741f5582cb3bef29f3c7df539618b3192 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,731 Found link https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 (from https://pypi.org/simple/gemmi/), version: 0.4.6 2021-07-29T18:36:27,731 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/86/cdff573b699036edc8ca9f7d83f3f40736ef17ea79726e1b2de7debcd72e/gemmi-0.4.7-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=16038c4f997850ec80ec26e1da46d79ca7ca691958a7b9d8b4af48de5d976f5c (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,731 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1c/6b/786e51debc4e0e199c67fb5a00972f02c6b0e01fdbf6ad19b726fba6a669/gemmi-0.4.7-cp27-cp27m-manylinux2010_i686.whl#sha256=bda0dc61a1352e1eb23e6109664518b4e121fb50d29cf49f96b82f9dcc446516 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,731 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0d/51/99d207e130a212b2bccdc179a4e78a8ceaade11f5ee15c2f4ae3f6d4ecf2/gemmi-0.4.7-cp27-cp27m-manylinux2010_x86_64.whl#sha256=e77c0c838e7f3e6c44bbc5a85be8f446a199a0a705ed4fc1ea0b5416292725d5 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,732 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a2/cd/2fa705d106c5c08b541db9c65bb12f237930bc504995c04e055e8f8c2a50/gemmi-0.4.7-cp27-cp27mu-manylinux2010_i686.whl#sha256=96c08fa68e0282cb4531057752e2d00d5d124797e7b7ecc995bb0732ea56d437 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,732 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6e/1d/85b0771c0235f82fef9df78050e5b22c8b92f89a587af1b4b6b5738fd94c/gemmi-0.4.7-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=ff0abceaddb65944c6331d74788287513a90791b0cb054f6ac49b2a9bfaa7ce3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,732 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/05/20ac362a07e783d571cc65efaf1b3ee539ec28e73985da6a059252b620e3/gemmi-0.4.7-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=c06e129a26b6360f9701a25d36a9f13396bc1bb85364f0e48e2fbdb7e043ae25 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,732 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/af/06d6cd6ce75983ccf4076846eaaf4a586964cfe121f3f767f7d7891f6bfe/gemmi-0.4.7-cp36-cp36m-manylinux2010_i686.whl#sha256=0dddbad6f0d23c466ea5ebc2d30756a9ebc85ddea9233b45403639a9b7e366d3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,732 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a5/61/c8e2ec5bd6d1b6288aa541edc603f43f9248a83f9ca470383d739d7d7adf/gemmi-0.4.7-cp36-cp36m-manylinux2010_x86_64.whl#sha256=b9a8217cba556d234d61bf63fd6acd0607c5826360cde7f45556b72f6b0339a8 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,733 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/c5/83d1c9084eab480c13849462e0f211d74d2aaefd0832e33a42099e4dc7a4/gemmi-0.4.7-cp36-cp36m-win32.whl#sha256=a6b29a96e67222d9f4980163c23b4482e239f8470f03508ce16efe9df892a42b (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,733 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/b9/f336e9522b8375f5e3ca8f02da39a1b3e5a62aa062ca63136c267a69f2ba/gemmi-0.4.7-cp36-cp36m-win_amd64.whl#sha256=c52da00dff031b357be636a128b84d26bcf071ee4735a58d577f445306963e8e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,733 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b3/54/4c0dd5642138b078b208fcd9600fc32e2d412b8945bc5b82fc74cbef20fe/gemmi-0.4.7-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b7f0d0a584c8bc893aee3a421692ead518fb647246067032869e154e1f60432e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,733 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/25/91/ba6367b2cdd3e7ae0400acecb3a8b9ec714a03850eec8023aa41f6124ff7/gemmi-0.4.7-cp37-cp37m-manylinux2010_i686.whl#sha256=56b2315724960c586e1c94af31f614fb656e123432e3d157166dfe5bd6ed9ea6 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,733 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/62/5e843d8e0706d9a1afadad6d8154e837f885aeea77ce72b55a7d88fe5cb3/gemmi-0.4.7-cp37-cp37m-manylinux2010_x86_64.whl#sha256=839e221500da009a66190c21a431b29737be8097e669d3984c3b9c2c4546f5bc (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,734 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b0/ed/c10ad32ec19e1a81c3cf7a7d5b8e511253ed8afc6c304e03ac5fb2fe7457/gemmi-0.4.7-cp37-cp37m-win32.whl#sha256=b1e8067b68223d94fe400a22737a235ba56b3f897383c3e24da5f5756c271cc3 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,734 Skipping link: No binaries permitted for gemmi: 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https://files.pythonhosted.org/packages/50/5d/45b02fecc8de9ea01860f3619954b8f97d702a25d21b59c782b2d0a081c0/gemmi-0.4.7-cp38-cp38-manylinux2010_x86_64.whl#sha256=d8dc0b2580d9a8afe10ac895e8494aedf42231ea4b8d7f1b2e7a194c0cfb01e1 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,735 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/65/5a/d7ef0e8daa496d1e7297fade11e9ef751b525e5e6a26aeaa53fc23acf98f/gemmi-0.4.7-cp38-cp38-win32.whl#sha256=7b23b20c1ff83b88f8d4f61ff3477716a8b5ff495c8e4166e03fb0e9ac769109 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,735 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/84/862810ac717e018ac4cb77860a565b40a6a072afae12e54c0c1fee2d846c/gemmi-0.4.7-cp38-cp38-win_amd64.whl#sha256=dfd4df4a87c20510c955688ba410130d631c8fe7301fa93c59ba5252027897c0 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,735 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d0/27/60f1014c10675300a44b83b9d9b6da47cbed148c9420cd407b89aca042db/gemmi-0.4.7-cp39-cp39-macosx_10_9_x86_64.whl#sha256=fe79f317d9b6e425326d64c310a22942ad7946ff6f422b62b363d12b188fb48e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,735 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/67/e3/3544831741bf92df12d53c16c10257fea7d8a5752c9212e1d6acf1359e0d/gemmi-0.4.7-cp39-cp39-manylinux2010_i686.whl#sha256=aea435633c2af30b3075594deacd256df55fec879d3cae484ea1dd715424509d (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,735 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d9/22/01d397b6c9298ceeabf12c25291afba0a04841a8ee847048136afed56f49/gemmi-0.4.7-cp39-cp39-manylinux2010_x86_64.whl#sha256=75df0a37120f34c4e8c7a9787e5aec4dd951491d870ed1167e45039a28b7e030 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,736 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/94/f2/59a58c53ea47f850008b60b059eb3a181cc05fd3d6a0abafbdbe8ad0b093/gemmi-0.4.7-cp39-cp39-win32.whl#sha256=867a7d5849c87f8e7e20e7806bc50abc372895548ecdbd29d15c0715d9459eab (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,736 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/32/48/f29a0b98b00d7f3a3cf6b7b194f77eab3cbb83a630be8cbc4fdb2d23ff04/gemmi-0.4.7-cp39-cp39-win_amd64.whl#sha256=bf08a3c86fd9a1753416ce59198bb92dfbc74448fd4068e58ac460fd49f2a7bf (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,736 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9b/9c/f6426743545f32e53190ca22d524819dff6b24ca98fc5c164da1db23f6db/gemmi-0.4.7-pp36-pypy36_pp73-macosx_10_9_x86_64.whl#sha256=e9c86f832f8f7def7941551e93b4a8b7fbd22ac6bdd5d42cd713941dc4270c4a (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,736 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ab/07/ea64580e7ed5ce8f2d1db56bf901e9d169d58d4dc52061d5453f6947b8ef/gemmi-0.4.7-pp36-pypy36_pp73-manylinux2010_x86_64.whl#sha256=b57ac1e854b3ff654c13463b6dc9204b489f274b7bc1b6cca80ccd3d7b90925e (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,736 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e4/7d/fc555f63e4842fe2411b7b5add1abb0dd0991f9c8b12a7adf98135531aa3/gemmi-0.4.7-pp36-pypy36_pp73-win32.whl#sha256=c5ae05194dfb35c8665a271aa954be0046b65697e399b1ab35ba0c8239b48269 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,737 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/b3/351231310fb90d16a1a443001a66be62ac3cc357f61c3c33e55ab55552e3/gemmi-0.4.7-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=2c6ec713141da611bf36a84248660d9c1ab49b451359649926f59aee459c9a25 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,737 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/59/87/54699b9751a3d1df8f0495ebf3d94de0c2c43a4890a4f00872e1217eb466/gemmi-0.4.7-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=567d1b48e10bfe4f056f9c74aa07fd355954bfa7308eac7dc10c9e3e8101a910 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,737 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/df/ea/e01a008a71fdb8fe566ec35e322fc2b85067f5158156b54e676f33386b69/gemmi-0.4.7-pp37-pypy37_pp73-win32.whl#sha256=d33a9bf473c446c71b9781fed07efc50fc80305dca26c933971c1ad0d7227768 (from https://pypi.org/simple/gemmi/) 2021-07-29T18:36:27,737 Found link https://files.pythonhosted.org/packages/1a/6a/57ab433972758026e23b70317c45e6dd3d8d5e3b613395222cfc1c66f8e0/gemmi-0.4.7.tar.gz#sha256=22b94c35e5cd807fcdadd3e548f0ddf11dc1b4c5550e3a1359cffdb3e1fc9d14 (from https://pypi.org/simple/gemmi/), version: 0.4.7 2021-07-29T18:36:27,737 Skipping link: not a file: https://pypi.org/simple/gemmi/ 2021-07-29T18:36:27,799 Given no hashes to check 1 links for project 'gemmi': discarding no candidates 2021-07-29T18:36:27,825 Collecting gemmi==0.4.6 2021-07-29T18:36:27,827 Created temporary directory: /tmp/pip-unpack-ndoe25tx 2021-07-29T18:36:28,259 Downloading gemmi-0.4.6.tar.gz (651 kB) 2021-07-29T18:36:29,186 Added gemmi==0.4.6 from https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 to build tracker '/tmp/pip-req-tracker-g5854jfr' 2021-07-29T18:36:29,187 Running setup.py (path:/tmp/pip-wheel-xe1suciv/gemmi_ce2633ae5ef44c3f97e6a913876477ca/setup.py) egg_info for package gemmi 2021-07-29T18:36:29,187 Created temporary directory: /tmp/pip-pip-egg-info-mribr2rt 2021-07-29T18:36:29,188 Running command python setup.py egg_info 2021-07-29T18:36:30,157 running egg_info 2021-07-29T18:36:30,159 creating /tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info 2021-07-29T18:36:30,160 writing /tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/PKG-INFO 2021-07-29T18:36:30,163 writing dependency_links to /tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/dependency_links.txt 2021-07-29T18:36:30,165 writing top-level names to /tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/top_level.txt 2021-07-29T18:36:30,166 writing manifest file '/tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/SOURCES.txt' 2021-07-29T18:36:30,321 reading manifest file '/tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/SOURCES.txt' 2021-07-29T18:36:30,323 reading manifest template 'MANIFEST.in' 2021-07-29T18:36:30,455 adding license file 'LICENSE.txt' 2021-07-29T18:36:30,473 writing manifest file '/tmp/pip-pip-egg-info-mribr2rt/gemmi.egg-info/SOURCES.txt' 2021-07-29T18:36:30,546 Source in /tmp/pip-wheel-xe1suciv/gemmi_ce2633ae5ef44c3f97e6a913876477ca has version 0.4.6, which satisfies requirement gemmi==0.4.6 from https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 2021-07-29T18:36:30,547 Removed gemmi==0.4.6 from https://files.pythonhosted.org/packages/ce/18/3fd50934956b378006bbd12cde768c35dd55c7f5359e82c8680100da07a4/gemmi-0.4.6.tar.gz#sha256=8c804510ddb455282e540189a6acc39c99cc759d27f41a55983c0ea99b8a6c77 from build tracker '/tmp/pip-req-tracker-g5854jfr' 2021-07-29T18:36:30,551 Created temporary directory: /tmp/pip-unpack-spwsmqv8 2021-07-29T18:36:30,551 Building wheels for collected packages: gemmi 2021-07-29T18:36:30,556 Created temporary directory: /tmp/pip-wheel-ww4d5kf4 2021-07-29T18:36:30,557 Building wheel for gemmi (setup.py): started 2021-07-29T18:36:30,557 Destination directory: /tmp/pip-wheel-ww4d5kf4 2021-07-29T18:36:30,557 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xe1suciv/gemmi_ce2633ae5ef44c3f97e6a913876477ca/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xe1suciv/gemmi_ce2633ae5ef44c3f97e6a913876477ca/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ww4d5kf4 2021-07-29T18:36:31,525 running bdist_wheel 2021-07-29T18:36:31,529 running build 2021-07-29T18:36:31,530 running build_py 2021-07-29T18:36:31,669 creating build 2021-07-29T18:36:31,670 creating build/lib.linux-armv7l-3.9 2021-07-29T18:36:31,670 creating build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,671 copying examples/long_geom.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,678 copying examples/mtrix_iso.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,680 copying examples/maskdiff.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,682 copying examples/col_order.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,683 copying examples/hello.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,685 copying examples/matthews.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,687 copying examples/cif_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,688 copying examples/rama_plot.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,690 copying examples/__init__.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,691 copying examples/mtz_i_sigi.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,693 copying examples/map2mtz.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,695 copying examples/merge_mtz_mmcif.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,697 copying examples/__main__.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,699 copying examples/multiproc.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,701 copying examples/aafreq.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,703 copying examples/weight.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,705 copying examples/patterson_slice.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,707 copying examples/sub_ccd.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,709 copying examples/rama_gather.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,711 copying examples/from_json.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,713 copying examples/maskcheck.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,715 copying examples/monomers.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,717 copying examples/ccd_gi.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,719 copying examples/simple_search.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,720 copying examples/ccd_subgraph.py -> build/lib.linux-armv7l-3.9/gemmi-examples 2021-07-29T18:36:31,724 running build_clib 2021-07-29T18:36:31,734 building 'gemmi_zlib' library 2021-07-29T18:36:31,735 creating build/temp.linux-armv7l-3.9 2021-07-29T18:36:31,735 creating build/temp.linux-armv7l-3.9/third_party 2021-07-29T18:36:31,736 creating build/temp.linux-armv7l-3.9/third_party/zlib 2021-07-29T18:36:31,737 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/adler32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o 2021-07-29T18:36:32,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/crc32.c -o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o 2021-07-29T18:36:32,533 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzlib.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o 2021-07-29T18:36:33,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzread.c -o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o 2021-07-29T18:36:33,773 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inflate.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o 2021-07-29T18:36:35,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inftrees.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o 2021-07-29T18:36:35,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inffast.c -o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o 2021-07-29T18:36:36,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/zutil.c -o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o 2021-07-29T18:36:36,809 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-3.9/libgemmi_zlib.a build/temp.linux-armv7l-3.9/third_party/zlib/adler32.o build/temp.linux-armv7l-3.9/third_party/zlib/crc32.o build/temp.linux-armv7l-3.9/third_party/zlib/gzlib.o build/temp.linux-armv7l-3.9/third_party/zlib/gzread.o build/temp.linux-armv7l-3.9/third_party/zlib/inflate.o build/temp.linux-armv7l-3.9/third_party/zlib/inftrees.o build/temp.linux-armv7l-3.9/third_party/zlib/inffast.o build/temp.linux-armv7l-3.9/third_party/zlib/zutil.o 2021-07-29T18:36:36,847 running build_ext 2021-07-29T18:36:36,855 creating tmp 2021-07-29T18:36:36,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp2irg19xt.cpp -o tmp/tmp2irg19xt.o -std=c++14 2021-07-29T18:36:36,941 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp6q1smuhm.cpp -o tmp/tmp6q1smuhm.o -fvisibility=hidden 2021-07-29T18:36:37,028 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpau43th48.cpp -o tmp/tmpau43th48.o -g0 2021-07-29T18:36:37,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmp3i3stwks.cpp -o tmp/tmp3i3stwks.o -Wl,-s 2021-07-29T18:36:37,202 building 'gemmi' extension 2021-07-29T18:36:38,517 creating build/temp.linux-armv7l-3.9/python 2021-07-29T18:36:38,519 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/align.cpp -o build/temp.linux-armv7l-3.9/python/align.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:37:04,444 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:37:04,445 from include/gemmi/model.hpp:15, 2021-07-29T18:37:04,445 from include/gemmi/align.hpp:8, 2021-07-29T18:37:04,445 from python/align.cpp:3: 2021-07-29T18:37:04,445 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Position&}; _Tp = gemmi::Position; _Alloc = std::allocator]’: 2021-07-29T18:37:04,445 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:37:04,445 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:37:04,446 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:08,048 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:37:08,048 from include/gemmi/model.hpp:15, 2021-07-29T18:37:08,049 from include/gemmi/align.hpp:8, 2021-07-29T18:37:08,049 from python/align.cpp:3: 2021-07-29T18:37:08,049 /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SupResult gemmi::calculate_superposition(gemmi::ConstResidueSpan, gemmi::ConstResidueSpan, gemmi::PolymerType, gemmi::SupSelect, char, bool)’: 2021-07-29T18:37:08,049 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:08,049 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:37:08,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:37:08,050 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:08,050 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:37:08,050 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:37:08,050 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:08,050 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:37:08,050 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:37:08,050 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:08,051 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:37:08,051 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:37:10,340 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:37:10,340 from include/gemmi/model.hpp:15, 2021-07-29T18:37:10,340 from include/gemmi/align.hpp:8, 2021-07-29T18:37:10,340 from python/align.cpp:3: 2021-07-29T18:37:10,340 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’: 2021-07-29T18:37:10,340 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:10,341 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:37:10,341 | ^~~~~~~~~~~~~ 2021-07-29T18:37:10,341 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:17,009 In file included from python/common.h:3, 2021-07-29T18:37:17,010 from python/align.cpp:7: 2021-07-29T18:37:17,010 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator, gemmi::Atom> >; Sentinel = gemmi::BidirIterator, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’: 2021-07-29T18:37:17,010 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:37:17,010 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:37:17,010 | ^~~~~~~~~~~~~ 2021-07-29T18:37:17,010 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:37:17,011 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:37:17,092 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Type&, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Type = gemmi::FilterProxy; Extra = {}]’: 2021-07-29T18:37:17,092 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:37:17,092 1986 | return make_iterator(std::begin(value), std::end(value), extra...); 2021-07-29T18:37:17,093 | ^ 2021-07-29T18:37:17,093 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:37:21,379 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:37:21,380 from include/gemmi/model.hpp:15, 2021-07-29T18:37:21,380 from include/gemmi/align.hpp:8, 2021-07-29T18:37:21,380 from python/align.cpp:3: 2021-07-29T18:37:21,380 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = gemmi::Position]’: 2021-07-29T18:37:21,380 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:21,380 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:37:21,381 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:37:21,489 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:37:21,490 from include/gemmi/model.hpp:15, 2021-07-29T18:37:21,490 from include/gemmi/align.hpp:8, 2021-07-29T18:37:21,490 from python/align.cpp:3: 2021-07-29T18:37:21,490 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:37:21,490 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:21,490 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:37:21,490 | ^~~~~~~~~~~~~ 2021-07-29T18:37:21,490 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:21,599 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:37:21,599 from include/gemmi/model.hpp:15, 2021-07-29T18:37:21,600 from include/gemmi/align.hpp:8, 2021-07-29T18:37:21,600 from python/align.cpp:3: 2021-07-29T18:37:21,600 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:37:21,600 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:37:21,600 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:37:21,600 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:21,790 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Selection::add_matching_children(const T&, T&) [with T = gemmi::Model]’: 2021-07-29T18:37:21,790 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:21,790 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:37:21,790 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:23,015 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:37:23,015 from include/gemmi/model.hpp:15, 2021-07-29T18:37:23,015 from include/gemmi/align.hpp:8, 2021-07-29T18:37:23,016 from python/align.cpp:3: 2021-07-29T18:37:23,016 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2021-07-29T18:37:23,016 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:23,016 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:37:23,016 | ^~~~~~~~~~~~~ 2021-07-29T18:37:23,016 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:24,181 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:37:24,182 from include/gemmi/model.hpp:15, 2021-07-29T18:37:24,182 from include/gemmi/align.hpp:8, 2021-07-29T18:37:24,182 from python/align.cpp:3: 2021-07-29T18:37:24,182 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:37:24,182 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:37:24,182 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:37:24,182 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:24,233 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2021-07-29T18:37:24,233 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:24,233 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:37:24,233 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:24,751 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:37:24,752 from include/gemmi/model.hpp:15, 2021-07-29T18:37:24,752 from include/gemmi/align.hpp:8, 2021-07-29T18:37:24,752 from python/align.cpp:3: 2021-07-29T18:37:24,752 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:37:24,752 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:24,753 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:37:24,753 | ^~~~~~~~~~~~~ 2021-07-29T18:37:24,753 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:24,928 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2021-07-29T18:37:24,928 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:24,928 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:24,928 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:24,928 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:24,929 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:24,929 149 | && __assignable>:: 2021-07-29T18:37:24,929 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:24,929 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:24,929 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,164 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’: 2021-07-29T18:37:25,164 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,164 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:37:25,165 | ^~~~~~~~~~~~~ 2021-07-29T18:37:25,165 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,268 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::RefinementInfo::RefinementInfo(const gemmi::RefinementInfo&)’: 2021-07-29T18:37:25,268 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,269 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,269 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,269 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,269 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,269 149 | && __assignable>:: 2021-07-29T18:37:25,269 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,269 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,269 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,388 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’: 2021-07-29T18:37:25,389 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,389 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,389 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,389 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,389 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,389 149 | && __assignable>:: 2021-07-29T18:37:25,389 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,389 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,390 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,390 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,390 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,390 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,390 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,390 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,390 149 | && __assignable>:: 2021-07-29T18:37:25,391 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,391 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,391 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,541 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’: 2021-07-29T18:37:25,541 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,541 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,541 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,541 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,542 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,542 149 | && __assignable>:: 2021-07-29T18:37:25,542 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,542 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,542 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,542 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,542 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,543 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,543 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,543 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,543 149 | && __assignable>:: 2021-07-29T18:37:25,543 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,543 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,543 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,764 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::TlsGroup; _Alloc = std::allocator]’: 2021-07-29T18:37:25,765 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:25,765 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:25,765 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,765 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:25,765 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,765 149 | && __assignable>:: 2021-07-29T18:37:25,765 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:25,765 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:25,765 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,727 /usr/include/c++/10/bits/stl_uninitialized.h: In member function ‘gemmi::Structure gemmi::Structure::empty_copy() const’: 2021-07-29T18:37:26,728 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:26,728 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:26,728 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,728 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:26,728 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,729 149 | && __assignable>:: 2021-07-29T18:37:26,729 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,729 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:26,729 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,738 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:26,738 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:26,738 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,738 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:26,738 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,739 149 | && __assignable>:: 2021-07-29T18:37:26,739 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,739 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:26,739 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,740 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:37:26,740 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:37:26,740 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,740 148 | && __is_trivial(_ValueType2) 2021-07-29T18:37:26,740 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,740 149 | && __assignable>:: 2021-07-29T18:37:26,741 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:26,741 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:37:26,741 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:37:28,467 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/ccp4.cpp -o build/temp.linux-armv7l-3.9/python/ccp4.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:38:00,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/cif.cpp -o build/temp.linux-armv7l-3.9/python/cif.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:38:51,499 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/custom.cpp -o build/temp.linux-armv7l-3.9/python/custom.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:38:56,172 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/elem.cpp -o build/temp.linux-armv7l-3.9/python/elem.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:39:17,647 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/gemmi.cpp -o build/temp.linux-armv7l-3.9/python/gemmi.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:39:37,952 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:39:37,952 from /usr/include/c++/10/valarray:38, 2021-07-29T18:39:37,952 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl.h:20, 2021-07-29T18:39:37,953 from python/gemmi.cpp:4: 2021-07-29T18:39:37,953 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:39:37,953 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:37,953 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2021-07-29T18:39:37,953 | ^~~~~~~~~~~ 2021-07-29T18:39:37,953 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:38,014 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::SmallStructure::remove_hydrogens()’: 2021-07-29T18:39:38,014 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:38,015 914 | return std::__remove_if(__first, __last, 2021-07-29T18:39:38,015 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:39:38,015 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-29T18:39:38,015 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:39:38,072 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:39:38,073 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:39:38,073 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:39:38,073 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:39:38,073 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:39:38,073 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:39:38,073 from python/common.h:3, 2021-07-29T18:39:38,074 from python/gemmi.cpp:3: 2021-07-29T18:39:38,074 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::SmallStructure::Site}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2021-07-29T18:39:38,074 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:39:38,074 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:39:38,074 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:39:38,231 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::SmallStructure gemmi::mx_to_sx_structure(const gemmi::Structure&, int)’: 2021-07-29T18:39:38,232 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:38,232 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:39:38,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:39:38,530 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2021-07-29T18:39:38,531 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:39:38,531 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:39:38,531 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:39:38,699 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:39:38,700 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:39:38,700 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:39:38,700 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:39:38,700 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:39:38,700 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:39:38,700 from python/common.h:3, 2021-07-29T18:39:38,700 from python/gemmi.cpp:3: 2021-07-29T18:39:38,700 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector gemmi::SmallStructure::get_all_unit_cell_sites() const’: 2021-07-29T18:39:38,701 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:38,701 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:39:38,701 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:39:38,701 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:39:38,701 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:39:38,701 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:39:48,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/grid.cpp -o build/temp.linux-armv7l-3.9/python/grid.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:40:21,288 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:40:21,288 from include/gemmi/grid.hpp:15, 2021-07-29T18:40:21,289 from python/grid.cpp:13: 2021-07-29T18:40:21,289 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Blob&}; _Tp = gemmi::Blob; _Alloc = std::allocator]’: 2021-07-29T18:40:21,289 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:40:21,289 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:40:21,289 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:40:25,630 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:40:25,631 from include/gemmi/grid.hpp:15, 2021-07-29T18:40:25,631 from python/grid.cpp:13: 2021-07-29T18:40:25,631 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector gemmi::find_blobs_by_flood_fill(const gemmi::Grid&, const gemmi::BlobCriteria&)’: 2021-07-29T18:40:25,631 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:40:25,631 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:40:25,632 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:40:48,053 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:40:48,053 from include/gemmi/grid.hpp:15, 2021-07-29T18:40:48,053 from python/grid.cpp:13: 2021-07-29T18:40:48,053 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator]’: 2021-07-29T18:40:48,053 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:40:48,053 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:40:48,054 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:40:48,112 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:40:48,112 from include/gemmi/grid.hpp:15, 2021-07-29T18:40:48,112 from python/grid.cpp:13: 2021-07-29T18:40:48,112 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = gemmi::Fractional]’: 2021-07-29T18:40:48,112 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:40:48,112 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:40:48,112 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:40:48,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/hkl.cpp -o build/temp.linux-armv7l-3.9/python/hkl.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:41:24,301 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:41:24,301 from include/gemmi/unitcell.hpp:10, 2021-07-29T18:41:24,302 from python/hkl.cpp:3: 2021-07-29T18:41:24,302 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:41:24,302 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:41:24,302 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:41:24,302 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:41:24,302 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:41:24,383 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-29T18:41:24,383 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:24,383 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:41:24,384 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:41:24,888 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::cif::Block}; _Tp = gemmi::ReflnBlock; _Alloc = std::allocator]’: 2021-07-29T18:41:24,889 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:41:24,889 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:41:24,889 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:41:24,889 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:41:25,089 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:41:25,089 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:41:25,248 /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::Mtz::Dataset& gemmi::Mtz::add_dataset(const string&)’: 2021-07-29T18:41:25,249 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:25,249 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:41:25,249 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:41:34,616 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, std::vector, {gemmi::cif::Document&}, {pybind11::name, pybind11::scope, pybind11::sibling}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:41:34,616 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:34,616 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:41:34,616 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:41:37,000 In file included from python/common.h:3, 2021-07-29T18:41:37,000 from python/hkl.cpp:11: 2021-07-29T18:41:37,000 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::ReflnBlock&; Extra = {}]’: 2021-07-29T18:41:37,000 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:37,000 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:41:37,000 | ^~~~~~~~~~~~~ 2021-07-29T18:41:37,001 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:37,001 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:37,088 In file included from python/hkl.cpp:14: 2021-07-29T18:41:37,088 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:41:37,088 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:41:37,088 318 | v.begin(), v.end()); 2021-07-29T18:41:37,089 | ^ 2021-07-29T18:41:48,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/meta.cpp -o build/temp.linux-armv7l-3.9/python/meta.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:42:26,617 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:26,618 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:26,618 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:26,618 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:26,618 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:26,618 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:26,618 from python/common.h:3, 2021-07-29T18:42:26,618 from python/meta.cpp:3: 2021-07-29T18:42:26,618 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::NcsOp&}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:42:26,618 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:26,619 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:26,619 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:26,675 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:42:26,675 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:26,675 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:26,675 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:26,677 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:26,677 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:42:26,677 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:26,729 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:42:26,729 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:26,729 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:26,730 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:26,730 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:26,768 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:42:26,769 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:26,769 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:26,769 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,074 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:42:27,074 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,075 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,075 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,218 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:42:27,218 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:27,219 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,219 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,220 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:27,221 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:42:27,221 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,302 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:42:27,302 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,302 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,302 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,303 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,381 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:42:27,382 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,382 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,382 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,457 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:27,458 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,458 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,458 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,458 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,519 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:27,520 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,520 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,520 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,807 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:42:27,807 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,808 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,808 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:27,808 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,899 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:42:27,900 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:27,900 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:27,900 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:32,715 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:32,715 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:32,716 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:32,716 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:32,716 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:32,716 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:32,716 from python/common.h:3, 2021-07-29T18:42:32,716 from python/meta.cpp:3: 2021-07-29T18:42:32,716 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:32,716 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:32,716 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:32,717 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:32,812 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:32,812 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:32,812 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:32,812 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:32,935 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:32,935 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:32,935 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:32,935 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:33,158 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:33,159 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:33,159 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:33,159 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:33,292 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:33,293 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:33,293 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:33,293 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:33,401 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:33,401 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:33,401 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:33,401 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:35,611 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:35,612 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:35,612 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:35,612 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:35,828 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:35,828 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:35,828 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:35,828 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:38,839 In file included from python/common.h:3, 2021-07-29T18:42:38,839 from python/meta.cpp:3: 2021-07-29T18:42:38,839 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Assembly&; Extra = {}]’: 2021-07-29T18:42:38,839 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:38,839 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:42:38,839 | ^~~~~~~~~~~~~ 2021-07-29T18:42:38,840 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:38,840 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:38,898 In file included from python/meta.cpp:5: 2021-07-29T18:42:38,898 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:38,899 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:38,899 318 | v.begin(), v.end()); 2021-07-29T18:42:38,899 | ^ 2021-07-29T18:42:39,011 In file included from python/common.h:3, 2021-07-29T18:42:39,011 from python/meta.cpp:3: 2021-07-29T18:42:39,011 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Assembly::Operator&; Extra = {}]’: 2021-07-29T18:42:39,011 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,012 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:42:39,012 | ^~~~~~~~~~~~~ 2021-07-29T18:42:39,012 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,068 In file included from python/meta.cpp:5: 2021-07-29T18:42:39,068 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:39,068 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,068 318 | v.begin(), v.end()); 2021-07-29T18:42:39,068 | ^ 2021-07-29T18:42:39,097 In file included from python/common.h:3, 2021-07-29T18:42:39,097 from python/meta.cpp:3: 2021-07-29T18:42:39,098 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Connection&; Extra = {}]’: 2021-07-29T18:42:39,098 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,098 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:42:39,098 | ^~~~~~~~~~~~~ 2021-07-29T18:42:39,098 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,154 In file included from python/meta.cpp:5: 2021-07-29T18:42:39,154 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:39,154 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,154 318 | v.begin(), v.end()); 2021-07-29T18:42:39,155 | ^ 2021-07-29T18:42:39,267 In file included from python/common.h:3, 2021-07-29T18:42:39,267 from python/meta.cpp:3: 2021-07-29T18:42:39,267 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::NcsOp&; Extra = {}]’: 2021-07-29T18:42:39,268 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,268 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:42:39,268 | ^~~~~~~~~~~~~ 2021-07-29T18:42:39,268 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,324 In file included from python/meta.cpp:5: 2021-07-29T18:42:39,324 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:39,324 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:39,324 318 | v.begin(), v.end()); 2021-07-29T18:42:39,325 | ^ 2021-07-29T18:42:48,097 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:48,097 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:48,097 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:48,097 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:48,097 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:48,097 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:48,098 from python/common.h:3, 2021-07-29T18:42:48,098 from python/meta.cpp:3: 2021-07-29T18:42:48,098 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:42:48,098 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:48,098 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:48,098 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:48,160 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:48,161 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:48,161 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:48,161 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:48,288 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:48,289 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:48,289 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:48,289 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:48,290 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:48,290 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:48,290 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:48,290 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:48,290 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:48,291 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:48,291 from python/common.h:3, 2021-07-29T18:42:48,291 from python/meta.cpp:3: 2021-07-29T18:42:48,291 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:48,291 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:42:48,291 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,037 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:49,037 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:49,037 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:49,037 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:49,038 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:49,038 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:49,038 from python/common.h:3, 2021-07-29T18:42:49,038 from python/meta.cpp:3: 2021-07-29T18:42:49,038 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:42:49,038 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:49,038 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:49,038 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,303 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>’: 2021-07-29T18:42:49,303 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:49,303 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:49,303 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,304 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:49,304 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:49,304 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:49,304 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:49,304 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:49,304 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:49,305 from python/common.h:3, 2021-07-29T18:42:49,305 from python/meta.cpp:3: 2021-07-29T18:42:49,305 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:49,305 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:42:49,305 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,604 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:49,604 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:49,604 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:49,604 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:49,604 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:49,604 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:49,605 from python/common.h:3, 2021-07-29T18:42:49,605 from python/meta.cpp:3: 2021-07-29T18:42:49,605 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::’: 2021-07-29T18:42:49,605 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:49,605 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:49,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,813 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly::Operator}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:49,813 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:49,814 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:49,814 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:49,896 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:49,896 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:49,896 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:49,896 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:50,038 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:50,038 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:50,038 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:50,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:50,038 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:50,039 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:50,039 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:50,039 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:50,039 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:50,039 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:50,039 from python/common.h:3, 2021-07-29T18:42:50,039 from python/meta.cpp:3: 2021-07-29T18:42:50,039 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:50,039 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:42:50,040 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:50,307 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:50,307 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:50,307 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:50,307 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:50,307 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:50,307 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:50,308 from python/common.h:3, 2021-07-29T18:42:50,308 from python/meta.cpp:3: 2021-07-29T18:42:50,308 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:42:50,308 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:50,308 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:50,308 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:51,131 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:51,131 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:51,194 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:51,194 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:51,194 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:51,195 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:51,195 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:51,195 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:51,195 from python/common.h:3, 2021-07-29T18:42:51,195 from python/meta.cpp:3: 2021-07-29T18:42:51,195 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:51,195 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:51,195 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:51,195 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:51,246 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:51,246 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:51,247 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:51,247 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:51,247 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:51,247 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:51,247 from python/common.h:3, 2021-07-29T18:42:51,247 from python/meta.cpp:3: 2021-07-29T18:42:51,247 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:51,248 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:51,248 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:51,248 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:51,248 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:51,248 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:42:51,248 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:51,326 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:51,326 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:51,327 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:51,327 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:51,327 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:51,327 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:51,327 from python/common.h:3, 2021-07-29T18:42:51,327 from python/meta.cpp:3: 2021-07-29T18:42:51,327 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:51,327 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:51,328 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:51,328 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:52,422 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:52,422 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,423 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,423 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,423 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,423 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,423 from python/common.h:3, 2021-07-29T18:42:52,423 from python/meta.cpp:3: 2021-07-29T18:42:52,423 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly&}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:42:52,424 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:42:52,424 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:52,424 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,495 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:52,495 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,495 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,495 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,495 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,496 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,496 from python/common.h:3, 2021-07-29T18:42:52,496 from python/meta.cpp:3: 2021-07-29T18:42:52,496 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:52,496 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,496 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:52,496 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:52,586 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:52,587 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,587 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,587 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,587 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,587 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,587 from python/common.h:3, 2021-07-29T18:42:52,587 from python/meta.cpp:3: 2021-07-29T18:42:52,587 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:42:52,588 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:52,588 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:42:52,588 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,588 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,588 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:42:52,588 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,728 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:52,728 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,729 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:52,729 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,729 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:52,729 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,729 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,729 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,729 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,730 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,730 from python/common.h:3, 2021-07-29T18:42:52,730 from python/meta.cpp:3: 2021-07-29T18:42:52,730 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,730 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:42:52,730 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,905 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:42:52,905 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,906 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,906 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,906 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,906 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,906 from python/common.h:3, 2021-07-29T18:42:52,906 from python/meta.cpp:3: 2021-07-29T18:42:52,906 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:52,906 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,907 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:42:52,907 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:52,974 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:52,974 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:52,974 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:52,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:52,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:52,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:52,975 from python/common.h:3, 2021-07-29T18:42:52,975 from python/meta.cpp:3: 2021-07-29T18:42:52,975 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:52,975 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:52,975 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:42:52,976 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:42:53,101 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:42:53,101 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:53,101 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:53,101 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:53,102 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:53,102 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:53,102 from python/common.h:3, 2021-07-29T18:42:53,102 from python/meta.cpp:3: 2021-07-29T18:42:53,102 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly::Operator*; bool _TrivialValueTypes = false]’: 2021-07-29T18:42:53,102 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,102 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:42:53,102 | ^~~~~~~~~~~~~ 2021-07-29T18:42:53,103 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,172 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:53,173 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,173 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:42:53,173 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,173 148 | && __is_trivial(_ValueType2) 2021-07-29T18:42:53,173 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,173 149 | && __assignable>:: 2021-07-29T18:42:53,173 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,173 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:42:53,174 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,174 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,174 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:42:53,174 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,174 148 | && __is_trivial(_ValueType2) 2021-07-29T18:42:53,174 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,174 149 | && __assignable>:: 2021-07-29T18:42:53,174 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,175 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:42:53,175 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,260 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:42:53,260 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,260 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:42:53,260 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,260 148 | && __is_trivial(_ValueType2) 2021-07-29T18:42:53,260 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,261 149 | && __assignable>:: 2021-07-29T18:42:53,261 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,261 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:42:53,261 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,855 In file included from python/meta.cpp:5: 2021-07-29T18:42:53,855 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:53,855 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:53,855 184 | v.insert(v.begin() + i, x); 2021-07-29T18:42:53,856 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:53,975 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:53,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:53,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:53,975 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:53,976 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:53,976 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:53,976 from python/common.h:3, 2021-07-29T18:42:53,976 from python/meta.cpp:3: 2021-07-29T18:42:53,976 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Assembly::Operator, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:53,976 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:53,976 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:53,976 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,023 In file included from python/meta.cpp:5: 2021-07-29T18:42:54,024 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,024 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:54,024 184 | v.insert(v.begin() + i, x); 2021-07-29T18:42:54,024 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,104 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,104 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:54,104 184 | v.insert(v.begin() + i, x); 2021-07-29T18:42:54,104 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,217 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:54,217 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:54,217 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:54,218 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:54,218 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:54,218 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:54,218 from python/common.h:3, 2021-07-29T18:42:54,218 from python/meta.cpp:3: 2021-07-29T18:42:54,218 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::NcsOp, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,218 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,218 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,219 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,262 In file included from python/meta.cpp:5: 2021-07-29T18:42:54,262 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,262 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:42:54,263 184 | v.insert(v.begin() + i, x); 2021-07-29T18:42:54,263 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,615 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:42:54,616 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:54,616 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:54,616 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:54,616 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:54,616 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:54,616 from python/common.h:3, 2021-07-29T18:42:54,616 from python/meta.cpp:3: 2021-07-29T18:42:54,617 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,617 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,617 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,617 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,680 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,681 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,681 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,681 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,713 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,713 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,713 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,714 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,744 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,744 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,744 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,744 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,910 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Assembly, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:54,910 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,910 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,910 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:54,950 /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Connection, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::’: 2021-07-29T18:42:54,950 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:54,951 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:42:54,951 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,284 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:42:55,284 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:42:55,284 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:42:55,284 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:42:55,285 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:42:55,285 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:42:55,285 from python/common.h:3, 2021-07-29T18:42:55,285 from python/meta.cpp:3: 2021-07-29T18:42:55,285 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::NcsOp*; bool _TrivialValueTypes = false]’: 2021-07-29T18:42:55,285 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:55,285 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:42:55,285 | ^~~~~~~~~~~~~ 2021-07-29T18:42:55,286 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:55,347 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:42:55,347 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:55,347 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:42:55,347 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,347 148 | && __is_trivial(_ValueType2) 2021-07-29T18:42:55,347 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,348 149 | && __assignable>:: 2021-07-29T18:42:55,348 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,348 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:42:55,348 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,348 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:42:55,348 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:42:55,348 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,348 148 | && __is_trivial(_ValueType2) 2021-07-29T18:42:55,349 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,349 149 | && __assignable>:: 2021-07-29T18:42:55,349 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:55,349 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:42:55,349 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:42:56,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mol.cpp -o build/temp.linux-armv7l-3.9/python/mol.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:43:43,008 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:43:43,009 from include/gemmi/model.hpp:15, 2021-07-29T18:43:43,009 from python/mol.cpp:3: 2021-07-29T18:43:43,009 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:43:43,009 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:43,009 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:43:43,009 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:43,050 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:43:43,050 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:43,089 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector&)’: 2021-07-29T18:43:43,090 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:43,090 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:43:43,090 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:43,090 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:43,091 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:43:43,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:44,296 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:43:44,297 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:44,297 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:43:44,297 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:44,329 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:43:44,330 from include/gemmi/model.hpp:15, 2021-07-29T18:43:44,330 from python/mol.cpp:3: 2021-07-29T18:43:44,330 /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_child(P&, int) [with P = gemmi::Residue]’: 2021-07-29T18:43:44,330 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:44,330 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:43:44,330 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:44,399 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::remove_alternative_conformations(T&) [with T = gemmi::Chain]’: 2021-07-29T18:43:44,400 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:44,400 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:43:44,400 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,303 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:43:47,303 from include/gemmi/model.hpp:15, 2021-07-29T18:43:47,303 from python/mol.cpp:3: 2021-07-29T18:43:47,303 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:43:47,303 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:47,303 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:43:47,303 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,304 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:47,386 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-29T18:43:47,386 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,386 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:43:47,386 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,542 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:43:47,542 from include/gemmi/model.hpp:8, 2021-07-29T18:43:47,542 from python/mol.cpp:3: 2021-07-29T18:43:47,542 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred:: >]’: 2021-07-29T18:43:47,542 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,542 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2021-07-29T18:43:47,543 | ^~~~~~~~~~~ 2021-07-29T18:43:47,543 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,543 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,612 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:43:47,612 from include/gemmi/model.hpp:15, 2021-07-29T18:43:47,612 from python/mol.cpp:3: 2021-07-29T18:43:47,612 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:43:47,612 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:47,613 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:43:47,613 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,613 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:43:47,655 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:43:47,655 from include/gemmi/model.hpp:15, 2021-07-29T18:43:47,655 from python/mol.cpp:3: 2021-07-29T18:43:47,655 /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_children(P&, pybind11::slice) [with P = gemmi::Residue]’: 2021-07-29T18:43:47,655 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,656 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:43:47,656 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,656 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,656 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:43:47,656 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,725 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::vector_remove_if(std::vector&, F&&) [with T = gemmi::Atom; F = gemmi::trim_to_alanine(gemmi::Residue&)::]’: 2021-07-29T18:43:47,726 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,726 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:43:47,726 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,878 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:43:47,878 from include/gemmi/model.hpp:8, 2021-07-29T18:43:47,878 from python/mol.cpp:3: 2021-07-29T18:43:47,879 /usr/include/c++/10/bits/stl_algo.h: In function ‘void gemmi::remove_hydrogens(T&) [with T = gemmi::Residue]’: 2021-07-29T18:43:47,879 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,879 914 | return std::__remove_if(__first, __last, 2021-07-29T18:43:47,879 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,879 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-29T18:43:47,879 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,880 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:43:47,880 from include/gemmi/model.hpp:15, 2021-07-29T18:43:47,880 from python/mol.cpp:3: 2021-07-29T18:43:47,880 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,880 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:43:47,880 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,896 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:43:47,896 from include/gemmi/model.hpp:8, 2021-07-29T18:43:47,896 from python/mol.cpp:3: 2021-07-29T18:43:47,896 /usr/include/c++/10/bits/stl_algo.h: In function ‘void gemmi::remove_hydrogens(T&) [with T = gemmi::Structure]’: 2021-07-29T18:43:47,896 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,896 914 | return std::__remove_if(__first, __last, 2021-07-29T18:43:47,896 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,897 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-29T18:43:47,897 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:47,897 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:43:47,897 from include/gemmi/model.hpp:15, 2021-07-29T18:43:47,897 from python/mol.cpp:3: 2021-07-29T18:43:47,897 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:47,898 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:43:47,898 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:43:53,314 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:43:53,314 from include/gemmi/model.hpp:15, 2021-07-29T18:43:53,314 from python/mol.cpp:3: 2021-07-29T18:43:53,314 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’: 2021-07-29T18:43:53,314 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:53,315 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:43:53,315 | ^~~~~~~~~~~~~ 2021-07-29T18:43:53,315 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:53,697 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:43:53,698 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:43:53,698 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:02,554 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Structure&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:44:02,554 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:02,554 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:02,554 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:02,555 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:02,555 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:02,555 149 | && __assignable>:: 2021-07-29T18:44:02,555 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:02,555 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:02,555 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:12,494 In file included from python/common.h:3, 2021-07-29T18:44:12,495 from python/mol.cpp:9: 2021-07-29T18:44:12,495 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = const gemmi::Atom&; Extra = {}]’: 2021-07-29T18:44:12,495 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:12,495 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:44:12,495 | ^~~~~~~~~~~~~ 2021-07-29T18:44:12,495 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:12,496 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:12,554 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::iterator, {const gemmi::Residue&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:44:12,554 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:12,555 1986 | return make_iterator(std::begin(value), std::end(value), extra...); 2021-07-29T18:44:12,555 | ^ 2021-07-29T18:44:13,214 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator, gemmi::Atom> >; Sentinel = gemmi::BidirIterator, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’: 2021-07-29T18:44:13,215 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,215 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:44:13,215 | ^~~~~~~~~~~~~ 2021-07-29T18:44:13,215 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,215 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,215 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,278 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize&)>, pybind11::iterator, {gemmi::UniqProxy > >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:44:13,278 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,278 1986 | return make_iterator(std::begin(value), std::end(value), extra...); 2021-07-29T18:44:13,278 | ^ 2021-07-29T18:44:13,278 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:13,279 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1986:78: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2021-07-29T18:44:19,994 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:44:19,995 from include/gemmi/model.hpp:15, 2021-07-29T18:44:19,995 from python/mol.cpp:3: 2021-07-29T18:44:19,995 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:44:19,995 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:44:19,995 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:44:19,995 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:20,085 /usr/include/c++/10/bits/vector.tcc: In function ‘C& add_child(P&, C, int) [with P = gemmi::Residue; C = gemmi::Atom]’: 2021-07-29T18:44:20,085 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:20,085 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2021-07-29T18:44:20,086 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:21,547 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:44:21,548 from include/gemmi/model.hpp:15, 2021-07-29T18:44:21,548 from python/mol.cpp:3: 2021-07-29T18:44:21,548 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, void, {gemmi::Residue&, const std::__cxx11::basic_string, std::allocator >&, char, gemmi::Element}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, pybind11::arg_v}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:44:21,548 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:21,548 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:44:21,548 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,019 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:44:22,019 from include/gemmi/model.hpp:15, 2021-07-29T18:44:22,019 from python/mol.cpp:3: 2021-07-29T18:44:22,019 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2021-07-29T18:44:22,020 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,020 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:44:22,020 | ^~~~~~~~~~~~~ 2021-07-29T18:44:22,020 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,080 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static void* pybind11::detail::type_caster_base::make_copy_constructor, void>::::_FUN(const void*)’: 2021-07-29T18:44:22,080 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,081 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:22,081 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,081 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:22,081 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,081 149 | && __assignable>:: 2021-07-29T18:44:22,081 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,081 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:22,082 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,132 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’: 2021-07-29T18:44:22,132 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,132 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:44:22,132 | ^~~~~~~~~~~~~ 2021-07-29T18:44:22,132 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,259 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:44:22,260 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,260 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,261 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:22,262 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:22,262 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,262 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:22,262 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,262 149 | && __assignable>:: 2021-07-29T18:44:22,262 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:22,262 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:22,263 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,015 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Structure&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:44:23,015 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,015 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:23,015 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,015 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:23,015 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,016 149 | && __assignable>:: 2021-07-29T18:44:23,016 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,016 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:23,016 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,187 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:44:23,187 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,187 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:44:23,188 | ^~~~~~~~~~~~~ 2021-07-29T18:44:23,188 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,280 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’: 2021-07-29T18:44:23,280 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,280 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:23,280 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,281 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:23,281 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,281 149 | && __assignable>:: 2021-07-29T18:44:23,281 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,281 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:23,281 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,281 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,282 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:23,282 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,282 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:23,282 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,282 149 | && __assignable>:: 2021-07-29T18:44:23,282 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,282 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:23,282 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,283 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,283 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:23,283 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,283 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:23,283 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,283 149 | && __assignable>:: 2021-07-29T18:44:23,283 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,283 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:23,284 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,405 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’: 2021-07-29T18:44:23,406 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:44:23,406 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:44:23,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,406 148 | && __is_trivial(_ValueType2) 2021-07-29T18:44:23,406 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,406 149 | && __assignable>:: 2021-07-29T18:44:23,406 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:23,407 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:44:23,407 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:44:24,632 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/monlib.cpp -o build/temp.linux-armv7l-3.9/python/monlib.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:45:10,004 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:45:10,005 from /usr/include/c++/10/string:40, 2021-07-29T18:45:10,005 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:45:10,005 from python/monlib.cpp:3: 2021-07-29T18:45:10,005 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:45:10,005 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:10,005 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2021-07-29T18:45:10,005 | ^~~~~~~~~ 2021-07-29T18:45:10,006 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:15,334 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:15,334 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:15,334 from python/monlib.cpp:3: 2021-07-29T18:45:15,334 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:15,334 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:15,334 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:15,334 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:15,412 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:15,413 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:15,513 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:15,513 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,125 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:19,125 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,126 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:19,126 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:19,172 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:19,172 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:19,172 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:19,172 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:19,210 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:19,210 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,211 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:19,211 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:19,211 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,266 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:19,267 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,267 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,332 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:19,332 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,332 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:19,626 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:19,626 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:19,626 from python/monlib.cpp:3: 2021-07-29T18:45:19,627 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::ChemComp::remove_nonmatching_restraints()’: 2021-07-29T18:45:19,627 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:19,627 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:19,627 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:19,628 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:19,628 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:19,628 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:19,629 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:19,629 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:19,629 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,099 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:20,099 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:20,099 from python/monlib.cpp:3: 2021-07-29T18:45:20,100 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:20,100 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:20,100 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:20,100 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,158 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:20,159 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:20,159 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:20,159 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,223 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:20,224 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:20,224 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:20,224 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,291 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:20,292 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:20,292 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:20,292 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,391 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:20,392 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:20,392 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:20,392 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,846 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::ChemComp gemmi::make_chemcomp_from_block(const gemmi::cif::Block&)’: 2021-07-29T18:45:20,846 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:20,846 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:20,846 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,847 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:45:20,848 from /usr/include/c++/10/string:40, 2021-07-29T18:45:20,848 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:45:20,848 from python/monlib.cpp:3: 2021-07-29T18:45:20,848 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:20,848 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:45:20,848 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:20,848 1975 | std::__iterator_category(__first)); 2021-07-29T18:45:20,848 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,415 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:21,415 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:21,415 from python/monlib.cpp:3: 2021-07-29T18:45:21,416 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::Restraints gemmi::read_restraint_modifications(const gemmi::cif::Block&)’: 2021-07-29T18:45:21,416 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:21,416 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:21,416 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,418 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:45:21,418 from /usr/include/c++/10/string:40, 2021-07-29T18:45:21,418 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:45:21,418 from python/monlib.cpp:3: 2021-07-29T18:45:21,419 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:21,419 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:45:21,419 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,419 1975 | std::__iterator_category(__first)); 2021-07-29T18:45:21,419 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,821 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:21,821 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:21,821 from python/monlib.cpp:3: 2021-07-29T18:45:21,821 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::Restraints gemmi::read_link_restraints(const gemmi::cif::Block&)’: 2021-07-29T18:45:21,821 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:21,821 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:21,821 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,824 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:45:21,824 from /usr/include/c++/10/string:40, 2021-07-29T18:45:21,824 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:45:21,824 from python/monlib.cpp:3: 2021-07-29T18:45:21,824 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:21,824 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:45:21,825 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:21,825 1975 | std::__iterator_category(__first)); 2021-07-29T18:45:21,825 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:22,329 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:22,330 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:22,330 from python/monlib.cpp:3: 2021-07-29T18:45:22,330 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:22,330 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:22,330 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:22,330 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:22,476 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:22,477 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:23,436 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:23,436 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:23,436 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:23,436 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:23,438 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:23,438 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:45:23,438 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:23,605 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:23,605 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:23,605 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:23,605 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:23,607 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:23,607 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:45:23,607 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,074 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:24,074 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:24,075 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,075 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,168 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:24,168 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:24,168 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,168 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,170 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:24,170 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:45:24,170 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,680 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Plane&}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:24,680 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:24,680 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,680 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,756 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:24,756 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:24,756 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,756 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,758 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:24,758 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:45:24,758 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,837 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:24,838 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:24,838 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,838 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:24,838 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:24,901 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:24,901 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:45:24,901 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:45:24,902 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:31,035 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:31,035 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:31,035 from python/monlib.cpp:3: 2021-07-29T18:45:31,035 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,035 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,036 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:31,036 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:31,149 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,150 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,150 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:31,150 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:31,337 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,337 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,337 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:31,337 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:31,458 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,459 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,459 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:31,459 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:31,491 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,491 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,491 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:31,491 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:31,608 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,608 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,608 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:31,608 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:31,644 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,645 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,645 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:31,645 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:31,764 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:31,764 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:31,765 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:31,765 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:32,522 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:32,522 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:32,522 from python/monlib.cpp:3: 2021-07-29T18:45:32,522 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:32,523 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:32,523 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:32,523 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:32,524 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:32,524 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:32,524 from python/monlib.cpp:3: 2021-07-29T18:45:32,524 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:32,524 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:32,524 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:32,699 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:32,700 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:32,700 from python/monlib.cpp:3: 2021-07-29T18:45:32,700 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:32,700 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:32,700 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:32,700 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,219 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:33,219 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,219 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:33,219 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,220 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:33,220 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:33,220 from python/monlib.cpp:3: 2021-07-29T18:45:33,220 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,220 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:33,221 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,406 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:33,407 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:33,407 from python/monlib.cpp:3: 2021-07-29T18:45:33,407 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:33,407 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,407 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:33,407 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,568 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:33,568 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,568 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:33,568 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,569 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:33,569 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:33,570 from python/monlib.cpp:3: 2021-07-29T18:45:33,570 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,570 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:33,570 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,728 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:33,729 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:33,729 from python/monlib.cpp:3: 2021-07-29T18:45:33,729 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:33,729 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,729 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:33,729 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,896 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:33,896 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,896 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:33,896 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:33,897 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:33,897 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:33,898 from python/monlib.cpp:3: 2021-07-29T18:45:33,898 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:33,898 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:45:33,898 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:34,042 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:45:34,042 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:34,042 from python/monlib.cpp:3: 2021-07-29T18:45:34,042 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:34,042 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:34,043 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:45:34,043 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:36,137 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:36,137 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:36,137 from python/monlib.cpp:3: 2021-07-29T18:45:36,138 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:36,138 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:36,138 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:36,138 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:36,254 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:36,254 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:36,254 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:36,254 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:36,374 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:36,384 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:36,384 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:36,384 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:36,601 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:36,602 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:36,602 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:45:36,602 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:45:41,761 In file included from python/common.h:3, 2021-07-29T18:45:41,761 from python/monlib.cpp:8: 2021-07-29T18:45:41,761 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Plane&; Extra = {}]’: 2021-07-29T18:45:41,761 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,762 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:45:41,762 | ^~~~~~~~~~~~~ 2021-07-29T18:45:41,762 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,818 In file included from python/monlib.cpp:10: 2021-07-29T18:45:41,818 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:41,818 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,818 318 | v.begin(), v.end()); 2021-07-29T18:45:41,819 | ^ 2021-07-29T18:45:41,931 In file included from python/common.h:3, 2021-07-29T18:45:41,931 from python/monlib.cpp:8: 2021-07-29T18:45:41,931 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Torsion&; Extra = {}]’: 2021-07-29T18:45:41,932 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,932 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:45:41,932 | ^~~~~~~~~~~~~ 2021-07-29T18:45:41,932 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,988 In file included from python/monlib.cpp:10: 2021-07-29T18:45:41,988 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:41,988 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:41,988 318 | v.begin(), v.end()); 2021-07-29T18:45:41,989 | ^ 2021-07-29T18:45:42,017 In file included from python/common.h:3, 2021-07-29T18:45:42,018 from python/monlib.cpp:8: 2021-07-29T18:45:42,018 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Angle&; Extra = {}]’: 2021-07-29T18:45:42,018 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,018 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:45:42,018 | ^~~~~~~~~~~~~ 2021-07-29T18:45:42,018 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,074 In file included from python/monlib.cpp:10: 2021-07-29T18:45:42,075 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:42,075 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,075 318 | v.begin(), v.end()); 2021-07-29T18:45:42,075 | ^ 2021-07-29T18:45:42,104 In file included from python/common.h:3, 2021-07-29T18:45:42,104 from python/monlib.cpp:8: 2021-07-29T18:45:42,104 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Bond&; Extra = {}]’: 2021-07-29T18:45:42,104 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,104 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:45:42,105 | ^~~~~~~~~~~~~ 2021-07-29T18:45:42,105 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,161 In file included from python/monlib.cpp:10: 2021-07-29T18:45:42,161 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:42,161 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:42,161 318 | v.begin(), v.end()); 2021-07-29T18:45:42,161 | ^ 2021-07-29T18:45:53,684 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:53,685 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:53,685 from python/monlib.cpp:3: 2021-07-29T18:45:53,685 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Plane, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:53,685 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:53,685 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:53,685 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:53,733 In file included from python/monlib.cpp:10: 2021-07-29T18:45:53,734 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:53,734 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:53,734 184 | v.insert(v.begin() + i, x); 2021-07-29T18:45:53,734 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:53,894 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:53,894 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:53,894 184 | v.insert(v.begin() + i, x); 2021-07-29T18:45:53,895 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:53,974 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:53,974 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:53,975 184 | v.insert(v.begin() + i, x); 2021-07-29T18:45:53,975 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,015 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:54,016 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:54,016 from python/monlib.cpp:3: 2021-07-29T18:45:54,016 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Bond, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,016 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,016 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,016 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,062 In file included from python/monlib.cpp:10: 2021-07-29T18:45:54,062 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,062 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:45:54,063 184 | v.insert(v.begin() + i, x); 2021-07-29T18:45:54,063 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,508 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:45:54,508 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:54,509 from python/monlib.cpp:3: 2021-07-29T18:45:54,509 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,509 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,509 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,509 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,541 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,541 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,542 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,542 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,608 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,608 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,608 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,608 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,640 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,640 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,640 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,640 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,708 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Torsion, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,708 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,708 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,708 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:54,750 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Angle, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:54,751 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:54,751 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:45:54,751 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,399 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:45:55,400 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:45:55,400 from python/monlib.cpp:3: 2021-07-29T18:45:55,400 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Bond*; bool _TrivialValueTypes = false]’: 2021-07-29T18:45:55,400 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,400 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:45:55,400 | ^~~~~~~~~~~~~ 2021-07-29T18:45:55,400 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,470 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:55,470 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,470 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,470 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,471 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,471 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,471 149 | && __assignable>:: 2021-07-29T18:45:55,471 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,471 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,471 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,471 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,472 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,472 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,472 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,472 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,472 149 | && __assignable>:: 2021-07-29T18:45:55,472 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,472 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,472 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,566 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:45:55,566 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,566 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,566 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,566 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,566 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,567 149 | && __assignable>:: 2021-07-29T18:45:55,567 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,567 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,567 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,669 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Angle*; bool _TrivialValueTypes = false]’: 2021-07-29T18:45:55,669 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,670 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:45:55,670 | ^~~~~~~~~~~~~ 2021-07-29T18:45:55,670 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,753 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:55,753 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,753 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,753 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,753 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,754 149 | && __assignable>:: 2021-07-29T18:45:55,754 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,754 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,754 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,754 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,754 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,755 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,755 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,755 149 | && __assignable>:: 2021-07-29T18:45:55,755 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,755 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,755 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,846 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:45:55,846 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,847 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:55,847 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,847 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:55,847 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,847 149 | && __assignable>:: 2021-07-29T18:45:55,847 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,847 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:55,847 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:55,954 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Torsion*; bool _TrivialValueTypes = false]’: 2021-07-29T18:45:55,954 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:55,954 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:45:55,954 | ^~~~~~~~~~~~~ 2021-07-29T18:45:55,955 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,047 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:56,047 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,047 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,047 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,047 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,047 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,048 149 | && __assignable>:: 2021-07-29T18:45:56,048 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,048 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,048 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,048 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,048 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,048 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,048 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,049 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,049 149 | && __assignable>:: 2021-07-29T18:45:56,049 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,049 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,049 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,134 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:45:56,134 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,134 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,134 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,134 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,135 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,135 149 | && __assignable>:: 2021-07-29T18:45:56,135 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,135 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,135 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,502 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2021-07-29T18:45:56,502 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,502 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:45:56,503 | ^~~~~~~~~~~~~ 2021-07-29T18:45:56,503 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,594 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:45:56,594 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,595 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,595 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,595 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,595 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,595 149 | && __assignable>:: 2021-07-29T18:45:56,595 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,595 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,595 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,596 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,596 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,596 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,596 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,596 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,596 149 | && __assignable>:: 2021-07-29T18:45:56,596 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,596 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,597 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,689 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:45:56,689 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:45:56,689 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:45:56,689 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,689 148 | && __is_trivial(_ValueType2) 2021-07-29T18:45:56,690 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,690 149 | && __assignable>:: 2021-07-29T18:45:56,690 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:45:56,690 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:45:56,690 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:00,119 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mtz.cpp -o build/temp.linux-armv7l-3.9/python/mtz.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:46:44,796 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:46:44,796 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:44,796 from python/mtz.cpp:3: 2021-07-29T18:46:44,796 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:44,796 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:44,796 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:44,796 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:44,797 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:44,889 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:44,889 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:44,889 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:46:44,889 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:44,988 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:46:44,988 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:44,988 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:44,988 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:45,070 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-29T18:46:45,071 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:45,071 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:46:45,071 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:46,759 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Mtz::Dataset&}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:46,759 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:46,759 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:46,759 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:46,759 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:46,900 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:46,901 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:46:46,901 130 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:46,901 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:46,903 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:46,903 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2021-07-29T18:46:46,903 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:47,021 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:47,022 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:47,022 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:47,022 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:47,022 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:47,133 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:47,134 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:47,134 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:47,134 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:47,934 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:47,935 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:46:47,935 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:46:47,935 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:48,028 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2021-07-29T18:46:48,028 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:48,028 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:46:48,029 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:54,353 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:46:54,353 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:54,353 from python/mtz.cpp:3: 2021-07-29T18:46:54,353 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:46:54,353 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:54,354 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:46:54,354 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:54,490 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:46:54,490 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:54,490 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:46:54,491 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:46:54,977 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:46:54,977 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:54,977 from python/mtz.cpp:3: 2021-07-29T18:46:54,977 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>’: 2021-07-29T18:46:54,978 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:54,978 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:46:54,978 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:54,978 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:46:54,978 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:54,978 from python/mtz.cpp:3: 2021-07-29T18:46:54,978 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:54,979 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:46:54,979 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:55,191 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:46:55,191 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:55,191 from python/mtz.cpp:3: 2021-07-29T18:46:55,191 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::’: 2021-07-29T18:46:55,192 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:55,192 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:46:55,192 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:46:57,107 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:46:57,107 from include/gemmi/mtz.hpp:17, 2021-07-29T18:46:57,107 from python/mtz.cpp:3: 2021-07-29T18:46:57,107 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:46:57,107 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:46:57,108 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:46:57,108 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:47:00,975 In file included from python/common.h:3, 2021-07-29T18:47:00,976 from python/mtz.cpp:8: 2021-07-29T18:47:00,976 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Iterator, Sentinel, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Mtz::Dataset&; Extra = {}]’: 2021-07-29T18:47:00,976 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:00,976 1929 | iterator make_iterator(Iterator first, Sentinel last, Extra &&... extra) { 2021-07-29T18:47:00,976 | ^~~~~~~~~~~~~ 2021-07-29T18:47:00,976 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:1929:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:01,057 In file included from python/mtz.cpp:10: 2021-07-29T18:47:01,058 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:01,058 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:318:38: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:01,058 318 | v.begin(), v.end()); 2021-07-29T18:47:01,058 | ^ 2021-07-29T18:47:09,046 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:09,046 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:184:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2021-07-29T18:47:09,046 184 | v.insert(v.begin() + i, x); 2021-07-29T18:47:09,046 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:09,538 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:47:09,538 from include/gemmi/mtz.hpp:17, 2021-07-29T18:47:09,539 from python/mtz.cpp:3: 2021-07-29T18:47:09,539 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:09,539 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:09,539 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:47:09,539 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:09,683 /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Mtz::Dataset, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::’: 2021-07-29T18:47:09,683 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:09,683 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:47:09,683 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,368 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:47:11,368 from include/gemmi/mtz.hpp:17, 2021-07-29T18:47:11,368 from python/mtz.cpp:3: 2021-07-29T18:47:11,368 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Mtz::Dataset*; bool _TrivialValueTypes = false]’: 2021-07-29T18:47:11,368 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,368 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:47:11,368 | ^~~~~~~~~~~~~ 2021-07-29T18:47:11,369 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,448 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {char [17]}, 0>::&)>, void, {pybind11::detail::value_and_holder&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:11,448 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,448 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:47:11,448 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,448 148 | && __is_trivial(_ValueType2) 2021-07-29T18:47:11,449 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,449 149 | && __assignable>:: 2021-07-29T18:47:11,449 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,449 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:47:11,449 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,507 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:11,508 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,508 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:47:11,508 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,508 148 | && __is_trivial(_ValueType2) 2021-07-29T18:47:11,508 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,508 149 | && __assignable>:: 2021-07-29T18:47:11,508 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,508 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:47:11,508 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,509 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,510 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:47:11,510 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,510 148 | && __is_trivial(_ValueType2) 2021-07-29T18:47:11,510 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,510 149 | && __assignable>:: 2021-07-29T18:47:11,510 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,510 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:47:11,510 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,617 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Mtz&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:47:11,618 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:11,618 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:47:11,618 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,618 148 | && __is_trivial(_ValueType2) 2021-07-29T18:47:11,618 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,618 149 | && __assignable>:: 2021-07-29T18:47:11,618 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:11,618 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:47:11,619 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:21,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/read.cpp -o build/temp.linux-armv7l-3.9/python/read.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:47:53,953 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:47:53,953 from include/gemmi/iterator.hpp:9, 2021-07-29T18:47:53,953 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:47:53,954 from python/read.cpp:4: 2021-07-29T18:47:53,954 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:47:53,954 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:53,954 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:53,954 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:53,993 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:47:53,994 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:54,032 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector&)’: 2021-07-29T18:47:54,032 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:54,032 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:54,033 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:54,033 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:54,033 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:54,033 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:54,084 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator]’: 2021-07-29T18:47:54,084 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:54,084 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:54,084 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:54,708 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]’: 2021-07-29T18:47:54,708 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:54,709 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:54,763 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]’: 2021-07-29T18:47:54,764 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:54,764 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:54,764 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:54,988 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:54,989 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:54,989 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:54,989 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,139 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,139 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:55,139 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:55,139 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,169 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,170 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:55,170 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:55,170 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,259 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,259 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:55,324 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,324 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:55,324 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:55,325 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,493 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,494 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:55,494 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:55,494 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,690 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,690 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:55,690 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:55,690 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,740 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,740 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:55,741 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:55,741 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,804 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,804 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:55,804 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:55,804 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:55,826 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]’: 2021-07-29T18:47:55,826 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:55,826 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:55,826 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:56,550 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:47:56,550 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:56,605 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:47:56,605 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:56,605 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:56,605 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:56,864 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:47:56,864 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:47:56,864 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:47:56,864 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:56,938 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:47:56,938 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:56,938 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:56,938 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:47:58,766 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’: 2021-07-29T18:47:58,767 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:47:58,767 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:47:58,767 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:00,113 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:48:00,113 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:00,113 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:00,114 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:00,114 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:00,195 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-29T18:48:00,195 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:00,195 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:00,195 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:00,903 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:48:00,903 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:00,904 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:00,904 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:01,067 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2021-07-29T18:48:01,068 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:01,068 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:01,068 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:01,511 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::read_connectivity(gemmi::cif::Block&, gemmi::Structure&)’: 2021-07-29T18:48:01,511 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:01,511 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:01,511 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:02,336 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:48:02,336 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:02,336 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:02,337 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:02,408 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2021-07-29T18:48:02,408 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:02,409 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:02,409 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:02,536 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:48:02,537 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:02,537 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:02,537 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:02,576 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2021-07-29T18:48:02,577 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:02,577 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:02,577 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:03,530 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2021-07-29T18:48:03,531 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:03,531 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:03,531 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:03,795 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:48:03,795 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:03,795 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:03,795 from python/read.cpp:4: 2021-07-29T18:48:03,795 /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’: 2021-07-29T18:48:03,795 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:03,795 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:48:03,796 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:48:03,799 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:03,800 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:48:03,800 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:48:07,953 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:48:07,953 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:07,953 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:07,953 from python/read.cpp:4: 2021-07-29T18:48:07,954 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2021-07-29T18:48:07,954 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:07,954 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:07,954 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:08,163 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:48:08,163 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:08,163 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:08,163 from python/read.cpp:4: 2021-07-29T18:48:08,163 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector gemmi::impl::read_assemblies(gemmi::cif::Block&)’: 2021-07-29T18:48:08,164 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:08,164 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:48:08,164 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:48:09,840 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:48:09,841 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:09,841 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:09,841 from python/read.cpp:4: 2021-07-29T18:48:09,841 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:48:09,841 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:09,841 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:48:09,841 | ^~~~~~~~~~~~~ 2021-07-29T18:48:09,842 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:09,966 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:48:09,966 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:09,967 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:09,967 from python/read.cpp:4: 2021-07-29T18:48:09,967 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]’: 2021-07-29T18:48:09,967 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:09,967 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:09,967 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:10,033 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]’: 2021-07-29T18:48:10,034 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:10,034 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:10,034 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:10,115 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]’: 2021-07-29T18:48:10,115 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:48:10,115 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:48:10,115 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:10,194 /usr/include/c++/10/bits/vector.tcc: In function ‘T& gemmi::impl::find_or_add(std::vector&, const string&) [with T = gemmi::RefinementInfo::Restr]’: 2021-07-29T18:48:10,195 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:10,195 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:10,195 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:10,334 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’: 2021-07-29T18:48:10,334 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:10,334 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:48:10,334 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:21,779 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:48:21,779 from include/gemmi/iterator.hpp:9, 2021-07-29T18:48:21,780 from include/gemmi/cifdoc.hpp:8, 2021-07-29T18:48:21,780 from python/read.cpp:4: 2021-07-29T18:48:21,780 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2021-07-29T18:48:21,780 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,780 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:48:21,780 | ^~~~~~~~~~~~~ 2021-07-29T18:48:21,780 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,834 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’: 2021-07-29T18:48:21,834 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,834 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,927 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:48:21,927 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,927 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,929 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:21,929 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:48:21,929 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:21,929 148 | && __is_trivial(_ValueType2) 2021-07-29T18:48:21,929 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:21,930 149 | && __assignable>:: 2021-07-29T18:48:21,930 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:21,930 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:48:21,930 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,112 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’: 2021-07-29T18:48:22,112 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,112 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:48:22,113 | ^~~~~~~~~~~~~ 2021-07-29T18:48:22,113 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,179 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’: 2021-07-29T18:48:22,179 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,179 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:48:22,179 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,179 148 | && __is_trivial(_ValueType2) 2021-07-29T18:48:22,179 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,179 149 | && __assignable>:: 2021-07-29T18:48:22,180 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,180 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:48:22,180 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,180 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,181 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:48:22,181 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,181 148 | && __is_trivial(_ValueType2) 2021-07-29T18:48:22,181 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,181 149 | && __assignable>:: 2021-07-29T18:48:22,181 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,181 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:48:22,181 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,182 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,182 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:48:22,182 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,182 148 | && __is_trivial(_ValueType2) 2021-07-29T18:48:22,183 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,183 149 | && __assignable>:: 2021-07-29T18:48:22,183 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,183 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:48:22,183 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,343 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’: 2021-07-29T18:48:22,343 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:48:22,343 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:48:22,344 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,344 148 | && __is_trivial(_ValueType2) 2021-07-29T18:48:22,344 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,344 149 | && __assignable>:: 2021-07-29T18:48:22,344 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:22,344 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:48:22,344 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:48:27,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/recgrid.cpp -o build/temp.linux-armv7l-3.9/python/recgrid.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:49:06,872 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:49:06,873 from include/gemmi/unitcell.hpp:10, 2021-07-29T18:49:06,873 from include/gemmi/asudata.hpp:11, 2021-07-29T18:49:06,873 from include/gemmi/recgrid.hpp:8, 2021-07-29T18:49:06,873 from python/recgrid.cpp:3: 2021-07-29T18:49:06,873 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mat33&, gemmi::Vec3&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:49:06,873 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:06,873 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:49:06,874 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:06,874 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:06,954 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const SG*) [with SG = gemmi::SpaceGroup]’: 2021-07-29T18:49:06,955 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:06,955 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:49:06,955 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:35,920 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/scaling.cpp -o build/temp.linux-armv7l-3.9/python/scaling.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:49:46,781 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:49:46,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:49:46,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:49:46,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:49:46,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:49:46,782 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:49:46,782 from python/common.h:3, 2021-07-29T18:49:46,782 from python/scaling.cpp:3: 2021-07-29T18:49:46,782 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:49:46,782 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:46,782 721 | vector<_Tp, _Alloc>:: 2021-07-29T18:49:46,782 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:49,435 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Scaling::Point}; _Tp = gemmi::Scaling::Point; _Alloc = std::allocator::Point>]’: 2021-07-29T18:49:49,435 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Point, std::allocator::Point> >::iterator’ changed in GCC 7.1 2021-07-29T18:49:49,435 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:49:49,435 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:49,506 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Scaling::prepare_points(const gemmi::AsuData >&, const gemmi::AsuData >&, const gemmi::AsuData >&) [with Real = float]’: 2021-07-29T18:49:49,506 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Point*, std::vector::Point, std::allocator::Point> > >’ changed in GCC 7.1 2021-07-29T18:49:49,506 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:49:49,506 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,897 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:49:55,897 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:55,897 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:49:55,897 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,897 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:55,935 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:49:55,935 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:49:55,935 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:49:55,935 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:49:55,935 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:49:55,935 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:49:55,936 from python/common.h:3, 2021-07-29T18:49:55,936 from python/scaling.cpp:3: 2021-07-29T18:49:55,936 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector gemmi::Scaling::get_parameters() const [with Real = float]’: 2021-07-29T18:49:55,936 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,936 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:49:55,936 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:49:55,937 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,937 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:49:55,937 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:49:55,938 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,938 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:49:55,938 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:49:55,939 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,939 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,939 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,939 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,939 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,940 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,940 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,940 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,941 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,941 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,941 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,941 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,942 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,942 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,942 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,942 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,942 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,943 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,943 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,943 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,943 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,943 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,943 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,944 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,944 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,944 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,944 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2021-07-29T18:49:55,944 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,944 1314 | std::random_access_iterator_tag()); 2021-07-29T18:49:55,945 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:55,945 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:55,945 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:49:55,945 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:49:56,087 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:49:56,087 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:49:56,087 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:49:56,087 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:49:56,087 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:49:56,088 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:49:56,088 from python/common.h:3, 2021-07-29T18:49:56,088 from python/scaling.cpp:3: 2021-07-29T18:49:56,088 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:49:56,088 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:49:56,088 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:49:56,088 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:56,120 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector gemmi::Scaling::compute_values() const [with Real = float]’: 2021-07-29T18:49:56,120 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:49:56,121 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:49:56,121 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:49:56,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/search.cpp -o build/temp.linux-armv7l-3.9/python/search.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:50:25,459 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:50:25,459 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:25,459 from python/search.cpp:3: 2021-07-29T18:50:25,459 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Transform&}; _Tp = gemmi::Transform; _Alloc = std::allocator]’: 2021-07-29T18:50:25,459 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:50:25,460 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:50:25,460 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:25,500 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator]’: 2021-07-29T18:50:25,500 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:50:25,594 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:50:25,594 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:25,594 from python/search.cpp:3: 2021-07-29T18:50:25,594 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::add_site(const gemmi::SmallStructure::Site&, int)’: 2021-07-29T18:50:25,595 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:25,595 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:50:25,595 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:50:29,843 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:50:29,843 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:29,843 from python/search.cpp:3: 2021-07-29T18:50:29,843 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2021-07-29T18:50:29,843 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:50:29,844 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:50:29,844 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:30,819 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:50:30,820 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:30,820 from python/search.cpp:3: 2021-07-29T18:50:30,820 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::initialize(gemmi::Model&, const gemmi::UnitCell&, double)’: 2021-07-29T18:50:30,820 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:30,820 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:50:30,820 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:50:30,821 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:50:30,822 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:30,822 from python/search.cpp:3: 2021-07-29T18:50:30,822 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:30,822 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:50:30,822 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:45,160 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:50:45,161 from include/gemmi/neighbor.hpp:9, 2021-07-29T18:50:45,161 from python/search.cpp:3: 2021-07-29T18:50:45,161 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2021-07-29T18:50:45,161 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:45,161 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:50:45,162 | ^~~~~~~~~~~~~ 2021-07-29T18:50:45,162 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:45,342 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’: 2021-07-29T18:50:45,342 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:50:45,342 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:50:45,342 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:45,343 148 | && __is_trivial(_ValueType2) 2021-07-29T18:50:45,343 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:45,343 149 | && __assignable>:: 2021-07-29T18:50:45,343 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:45,343 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:50:45,343 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:50:46,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sf.cpp -o build/temp.linux-armv7l-3.9/python/sf.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:51:17,374 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:51:17,374 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:51:17,374 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:51:17,374 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:51:17,374 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:51:17,374 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:51:17,375 from python/common.h:3, 2021-07-29T18:51:17,375 from python/sf.cpp:3: 2021-07-29T18:51:17,375 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:51:17,375 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:51:17,375 509 | vector<_Tp, _Alloc>:: 2021-07-29T18:51:17,375 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:51:17,444 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:51:17,444 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/common.h:160, 2021-07-29T18:51:17,444 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pytypes.h:12, 2021-07-29T18:51:17,444 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/cast.h:13, 2021-07-29T18:51:17,444 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/attr.h:13, 2021-07-29T18:51:17,444 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:44, 2021-07-29T18:51:17,445 from python/common.h:3, 2021-07-29T18:51:17,445 from python/sf.cpp:3: 2021-07-29T18:51:17,445 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::IT92]’: 2021-07-29T18:51:17,445 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:51:17,445 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T18:51:17,445 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:51:17,534 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::C4322]’: 2021-07-29T18:51:17,534 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:51:17,534 960 | _M_fill_insert(end(), __new_size - size(), __x); 2021-07-29T18:51:17,534 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:51:20,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sym.cpp -o build/temp.linux-armv7l-3.9/python/sym.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:52:00,538 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/topo.cpp -o build/temp.linux-armv7l-3.9/python/topo.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:52:46,466 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:52:46,466 from /usr/include/c++/10/string:40, 2021-07-29T18:52:46,466 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:52:46,467 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:46,467 from python/topo.cpp:3: 2021-07-29T18:52:46,467 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:52:46,467 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:46,467 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2021-07-29T18:52:46,467 | ^~~~~~~~~ 2021-07-29T18:52:46,467 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:47,157 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:52:47,157 from include/gemmi/util.hpp:8, 2021-07-29T18:52:47,157 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:52:47,158 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:52:47,158 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:47,158 from python/topo.cpp:3: 2021-07-29T18:52:47,158 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: 2021-07-29T18:52:47,158 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:47,158 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2021-07-29T18:52:47,158 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:47,249 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2021-07-29T18:52:47,249 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:47,249 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-29T18:52:47,250 | ^~~~~~~~~~~~~~~~ 2021-07-29T18:52:47,250 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:48,600 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-29T18:52:48,601 from /usr/include/c++/10/algorithm:62, 2021-07-29T18:52:48,601 from include/gemmi/util.hpp:8, 2021-07-29T18:52:48,601 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:52:48,601 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:52:48,601 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:48,601 from python/topo.cpp:3: 2021-07-29T18:52:48,602 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = gemmi::Atom; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2021-07-29T18:52:48,602 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:48,602 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-29T18:52:48,602 | ^~~~~~~~~~~~~ 2021-07-29T18:52:50,889 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:52:50,889 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:50,889 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:50,890 from python/topo.cpp:3: 2021-07-29T18:52:50,890 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:52:50,890 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:50,890 171 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:50,890 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:50,974 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:52:50,974 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:51,822 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2021-07-29T18:52:51,822 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:51,822 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:51,823 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:51,923 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:52:51,923 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:51,923 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:51,923 from python/topo.cpp:3: 2021-07-29T18:52:51,923 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::add_hydrogens_without_positions(const gemmi::ChemComp&, gemmi::Residue&)’: 2021-07-29T18:52:51,923 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:51,924 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:52:51,924 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:52:54,404 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:52:54,404 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:54,404 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:54,404 from python/topo.cpp:3: 2021-07-29T18:52:54,405 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:52:54,405 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:54,405 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:54,405 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:54,480 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:52:54,480 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:54,480 184 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:54,480 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:54,480 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:54,543 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:52:54,543 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:54,543 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:54,750 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:52:54,750 from include/gemmi/util.hpp:8, 2021-07-29T18:52:54,750 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:52:54,751 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:52:54,751 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:54,751 from python/topo.cpp:3: 2021-07-29T18:52:54,751 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:52:54,751 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:54,751 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2021-07-29T18:52:54,752 | ^~~~~~~~~~~ 2021-07-29T18:52:54,752 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:54,842 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:52:54,842 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:54,842 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:55,061 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:52:55,062 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:55,062 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:55,062 from python/topo.cpp:3: 2021-07-29T18:52:55,062 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2021-07-29T18:52:55,062 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:55,062 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:55,062 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:56,082 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::BondedAtom}; _Tp = gemmi::BondedAtom; _Alloc = std::allocator]’: 2021-07-29T18:52:56,082 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:56,242 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::place_hydrogens(const gemmi::Atom&, gemmi::Topo::ResInfo&, const gemmi::Topo&)’: 2021-07-29T18:52:56,242 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:56,242 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:52:56,242 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:57,434 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2021-07-29T18:52:57,434 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:57,434 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:52:57,434 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:57,793 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2021-07-29T18:52:57,793 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-29T18:52:58,671 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:52:58,671 from include/gemmi/util.hpp:8, 2021-07-29T18:52:58,671 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:52:58,671 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:52:58,671 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,672 from python/topo.cpp:3: 2021-07-29T18:52:58,672 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::ChemMod::apply_to(gemmi::ChemComp&) const’: 2021-07-29T18:52:58,672 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,672 914 | return std::__remove_if(__first, __last, 2021-07-29T18:52:58,672 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,672 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-29T18:52:58,672 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,672 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:52:58,672 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:58,673 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,673 from python/topo.cpp:3: 2021-07-29T18:52:58,673 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,673 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:52:58,673 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,673 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:52:58,673 from include/gemmi/util.hpp:8, 2021-07-29T18:52:58,673 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:52:58,673 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:52:58,674 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,674 from python/topo.cpp:3: 2021-07-29T18:52:58,674 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,674 914 | return std::__remove_if(__first, __last, 2021-07-29T18:52:58,674 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,674 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2021-07-29T18:52:58,674 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,674 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:52:58,674 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:58,674 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,675 from python/topo.cpp:3: 2021-07-29T18:52:58,675 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,675 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2021-07-29T18:52:58,675 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,681 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,681 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:52:58,681 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:52:58,681 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,682 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:52:58,682 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,682 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,682 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:52:58,682 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:52:58,691 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,691 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:52:58,691 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:52:58,691 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,691 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2021-07-29T18:52:58,692 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,692 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:52:58,692 from /usr/include/c++/10/string:40, 2021-07-29T18:52:58,692 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:52:58,692 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,692 from python/topo.cpp:3: 2021-07-29T18:52:58,692 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,692 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:52:58,692 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,693 1975 | std::__iterator_category(__first)); 2021-07-29T18:52:58,693 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,693 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:52:58,693 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:52:58,693 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,693 from python/topo.cpp:3: 2021-07-29T18:52:58,693 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,693 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:52:58,693 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,693 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:52:58,694 from /usr/include/c++/10/string:40, 2021-07-29T18:52:58,694 from include/gemmi/chemcomp.hpp:9, 2021-07-29T18:52:58,694 from include/gemmi/topo.hpp:8, 2021-07-29T18:52:58,694 from python/topo.cpp:3: 2021-07-29T18:52:58,694 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:52:58,694 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:52:58,694 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:52:58,694 1975 | std::__iterator_category(__first)); 2021-07-29T18:52:58,694 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:00,644 In file included from /usr/include/c++/10/vector:66, 2021-07-29T18:53:00,644 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:53:00,644 from include/gemmi/topo.hpp:8, 2021-07-29T18:53:00,644 from python/topo.cpp:3: 2021-07-29T18:53:00,645 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2021-07-29T18:53:00,645 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:00,645 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2021-07-29T18:53:00,645 | ^~~~~~~~~~~~~ 2021-07-29T18:53:00,645 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:00,765 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’: 2021-07-29T18:53:00,765 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:00,765 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:53:00,765 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:00,766 148 | && __is_trivial(_ValueType2) 2021-07-29T18:53:00,766 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:00,766 149 | && __assignable>:: 2021-07-29T18:53:00,766 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:00,766 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:53:00,766 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:01,704 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2021-07-29T18:53:01,704 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:01,704 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2021-07-29T18:53:01,704 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:01,704 148 | && __is_trivial(_ValueType2) 2021-07-29T18:53:01,705 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:01,705 149 | && __assignable>:: 2021-07-29T18:53:01,705 | ~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:01,705 150 | __uninit_copy(__first, __last, __result); 2021-07-29T18:53:01,705 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:02,080 In file included from /usr/include/c++/10/vector:67, 2021-07-29T18:53:02,080 from include/gemmi/chemcomp.hpp:10, 2021-07-29T18:53:02,080 from include/gemmi/topo.hpp:8, 2021-07-29T18:53:02,080 from python/topo.cpp:3: 2021-07-29T18:53:02,080 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Topo::initialize_refmac_topology(const gemmi::Structure&, gemmi::Model&, gemmi::MonLib&)’: 2021-07-29T18:53:02,081 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:02,081 1198 | _M_realloc_insert(end(), __x); 2021-07-29T18:53:02,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-29T18:53:02,616 In file included from /usr/include/c++/10/algorithm:62, 2021-07-29T18:53:02,616 from include/gemmi/util.hpp:8, 2021-07-29T18:53:02,616 from include/gemmi/cifdoc.hpp:11, 2021-07-29T18:53:02,616 from include/gemmi/chemcomp.hpp:11, 2021-07-29T18:53:02,617 from include/gemmi/topo.hpp:8, 2021-07-29T18:53:02,617 from python/topo.cpp:3: 2021-07-29T18:53:02,617 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2021-07-29T18:53:02,617 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:02,617 1662 | __heap_select(_RandomAccessIterator __first, 2021-07-29T18:53:02,617 | ^~~~~~~~~~~~~ 2021-07-29T18:53:02,617 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:02,618 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,472 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2021-07-29T18:53:34,472 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,472 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-29T18:53:34,473 | ^~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,473 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,475 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,475 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-29T18:53:34,475 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,477 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,477 1937 | std::__heap_select(__first, __middle, __last, __comp); 2021-07-29T18:53:34,478 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,748 /usr/include/c++/10/bits/stl_algo.h: In function ‘std::unique_ptr gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, bool)’: 2021-07-29T18:53:34,749 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,749 1974 | std::__introsort_loop(__first, __last, 2021-07-29T18:53:34,749 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,749 1975 | std::__lg(__last - __first) * 2, 2021-07-29T18:53:34,749 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,749 1976 | __comp); 2021-07-29T18:53:34,749 | ~~~~~~~ 2021-07-29T18:53:34,750 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,750 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-29T18:53:34,750 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:34,750 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:53:34,751 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-29T18:53:34,751 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:53:36,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/unitcell.cpp -o build/temp.linux-armv7l-3.9/python/unitcell.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:54:03,157 In file included from /usr/include/c++/10/vector:72, 2021-07-29T18:54:03,157 from include/gemmi/unitcell.hpp:10, 2021-07-29T18:54:03,157 from python/unitcell.cpp:3: 2021-07-29T18:54:03,157 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-29T18:54:03,158 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-29T18:54:03,158 426 | vector<_Tp, _Alloc>:: 2021-07-29T18:54:03,158 | ^~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:20,666 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::)>, pybind11::array_t, {const gemmi::SMat33&, pybind11::array_t}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg}>::::_FUN(pybind11::detail::function_call&)’: 2021-07-29T18:54:20,667 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2021-07-29T18:54:20,667 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-29T18:54:20,667 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:21,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/write.cpp -o build/temp.linux-armv7l-3.9/python/write.o -DVERSION_INFO="0.4.6" -std=c++14 -fvisibility=hidden -g0 2021-07-29T18:54:41,497 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2021-07-29T18:54:41,497 from /usr/include/c++/10/string:40, 2021-07-29T18:54:41,497 from include/gemmi/sprintf.hpp:19, 2021-07-29T18:54:41,497 from python/write.cpp:4: 2021-07-29T18:54:41,497 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:54:41,497 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:41,497 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2021-07-29T18:54:41,498 | ^~~~~~~~~ 2021-07-29T18:54:41,498 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:41,527 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2021-07-29T18:54:41,527 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:41,528 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,463 /usr/include/c++/10/bits/stl_algobase.h: In function ‘void gemmi::update_mmcif_block(const gemmi::Structure&, gemmi::cif::Block&, gemmi::MmcifOutputGroups)’: 2021-07-29T18:54:59,463 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,464 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,464 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,464 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,464 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,464 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,465 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,465 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,465 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,465 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,466 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,466 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,466 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,466 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,466 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,467 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,467 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,467 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,467 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,467 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,468 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,468 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,468 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,468 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,468 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,469 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,469 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,469 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,469 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,469 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,471 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,471 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,471 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,471 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,471 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,472 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,472 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,472 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,472 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,472 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,473 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,473 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,473 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,473 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,474 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,474 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,474 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,474 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,474 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,475 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,475 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,475 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,475 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,476 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,476 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,476 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-29T18:54:59,476 1974 | return __find_if(__first, __last, __pred, 2021-07-29T18:54:59,476 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:54:59,477 1975 | std::__iterator_category(__first)); 2021-07-29T18:54:59,477 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T18:55:15,898 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/python/align.o build/temp.linux-armv7l-3.9/python/ccp4.o build/temp.linux-armv7l-3.9/python/cif.o build/temp.linux-armv7l-3.9/python/custom.o build/temp.linux-armv7l-3.9/python/elem.o build/temp.linux-armv7l-3.9/python/gemmi.o build/temp.linux-armv7l-3.9/python/grid.o build/temp.linux-armv7l-3.9/python/hkl.o build/temp.linux-armv7l-3.9/python/meta.o build/temp.linux-armv7l-3.9/python/mol.o build/temp.linux-armv7l-3.9/python/monlib.o build/temp.linux-armv7l-3.9/python/mtz.o build/temp.linux-armv7l-3.9/python/read.o build/temp.linux-armv7l-3.9/python/recgrid.o build/temp.linux-armv7l-3.9/python/scaling.o build/temp.linux-armv7l-3.9/python/search.o build/temp.linux-armv7l-3.9/python/sf.o build/temp.linux-armv7l-3.9/python/sym.o build/temp.linux-armv7l-3.9/python/topo.o build/temp.linux-armv7l-3.9/python/unitcell.o build/temp.linux-armv7l-3.9/python/write.o -Lbuild/temp.linux-armv7l-3.9 -lgemmi_zlib -lgemmi_zlib -o build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -Wl,-s 2021-07-29T18:55:19,942 installing to build/bdist.linux-armv7l/wheel 2021-07-29T18:55:19,942 running install 2021-07-29T18:55:19,944 running install_lib 2021-07-29T18:55:19,949 creating build/bdist.linux-armv7l 2021-07-29T18:55:19,950 creating build/bdist.linux-armv7l/wheel 2021-07-29T18:55:19,952 creating build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,954 copying build/lib.linux-armv7l-3.9/gemmi-examples/long_geom.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,957 copying build/lib.linux-armv7l-3.9/gemmi-examples/mtrix_iso.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,959 copying build/lib.linux-armv7l-3.9/gemmi-examples/maskdiff.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,962 copying build/lib.linux-armv7l-3.9/gemmi-examples/col_order.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,964 copying build/lib.linux-armv7l-3.9/gemmi-examples/hello.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,966 copying build/lib.linux-armv7l-3.9/gemmi-examples/matthews.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,969 copying build/lib.linux-armv7l-3.9/gemmi-examples/cif_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,971 copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_plot.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,974 copying build/lib.linux-armv7l-3.9/gemmi-examples/__init__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,976 copying build/lib.linux-armv7l-3.9/gemmi-examples/mtz_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,978 copying build/lib.linux-armv7l-3.9/gemmi-examples/map2mtz.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,980 copying build/lib.linux-armv7l-3.9/gemmi-examples/merge_mtz_mmcif.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,983 copying build/lib.linux-armv7l-3.9/gemmi-examples/__main__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,985 copying build/lib.linux-armv7l-3.9/gemmi-examples/multiproc.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,987 copying build/lib.linux-armv7l-3.9/gemmi-examples/aafreq.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,990 copying build/lib.linux-armv7l-3.9/gemmi-examples/weight.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,993 copying build/lib.linux-armv7l-3.9/gemmi-examples/patterson_slice.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,995 copying build/lib.linux-armv7l-3.9/gemmi-examples/sub_ccd.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:19,998 copying build/lib.linux-armv7l-3.9/gemmi-examples/rama_gather.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,000 copying build/lib.linux-armv7l-3.9/gemmi-examples/from_json.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,003 copying build/lib.linux-armv7l-3.9/gemmi-examples/maskcheck.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,005 copying build/lib.linux-armv7l-3.9/gemmi-examples/monomers.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,008 copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_gi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,010 copying build/lib.linux-armv7l-3.9/gemmi-examples/simple_search.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,012 copying build/lib.linux-armv7l-3.9/gemmi-examples/ccd_subgraph.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2021-07-29T18:55:20,014 copying build/lib.linux-armv7l-3.9/gemmi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-29T18:55:20,150 running install_egg_info 2021-07-29T18:55:20,179 running egg_info 2021-07-29T18:55:20,179 writing gemmi.egg-info/PKG-INFO 2021-07-29T18:55:20,182 writing dependency_links to gemmi.egg-info/dependency_links.txt 2021-07-29T18:55:20,184 writing top-level names to gemmi.egg-info/top_level.txt 2021-07-29T18:55:20,200 reading manifest file 'gemmi.egg-info/SOURCES.txt' 2021-07-29T18:55:20,248 reading manifest template 'MANIFEST.in' 2021-07-29T18:55:20,375 adding license file 'LICENSE.txt' 2021-07-29T18:55:20,396 writing manifest file 'gemmi.egg-info/SOURCES.txt' 2021-07-29T18:55:20,398 Copying gemmi.egg-info to build/bdist.linux-armv7l/wheel/gemmi-0.4.6-py3.9.egg-info 2021-07-29T18:55:20,409 running install_scripts 2021-07-29T18:55:20,486 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-29T18:55:20,491 creating build/bdist.linux-armv7l/wheel/gemmi-0.4.6.dist-info/WHEEL 2021-07-29T18:55:20,494 creating '/tmp/pip-wheel-ww4d5kf4/gemmi-0.4.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T18:55:21,510 adding 'gemmi.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T18:55:21,557 adding 'gemmi-examples/__init__.py' 2021-07-29T18:55:21,558 adding 'gemmi-examples/__main__.py' 2021-07-29T18:55:21,560 adding 'gemmi-examples/aafreq.py' 2021-07-29T18:55:21,561 adding 'gemmi-examples/ccd_gi.py' 2021-07-29T18:55:21,562 adding 'gemmi-examples/ccd_subgraph.py' 2021-07-29T18:55:21,563 adding 'gemmi-examples/cif_i_sigi.py' 2021-07-29T18:55:21,565 adding 'gemmi-examples/col_order.py' 2021-07-29T18:55:21,566 adding 'gemmi-examples/from_json.py' 2021-07-29T18:55:21,567 adding 'gemmi-examples/hello.py' 2021-07-29T18:55:21,568 adding 'gemmi-examples/long_geom.py' 2021-07-29T18:55:21,569 adding 'gemmi-examples/map2mtz.py' 2021-07-29T18:55:21,570 adding 'gemmi-examples/maskcheck.py' 2021-07-29T18:55:21,571 adding 'gemmi-examples/maskdiff.py' 2021-07-29T18:55:21,573 adding 'gemmi-examples/matthews.py' 2021-07-29T18:55:21,574 adding 'gemmi-examples/merge_mtz_mmcif.py' 2021-07-29T18:55:21,576 adding 'gemmi-examples/monomers.py' 2021-07-29T18:55:21,577 adding 'gemmi-examples/mtrix_iso.py' 2021-07-29T18:55:21,578 adding 'gemmi-examples/mtz_i_sigi.py' 2021-07-29T18:55:21,579 adding 'gemmi-examples/multiproc.py' 2021-07-29T18:55:21,580 adding 'gemmi-examples/patterson_slice.py' 2021-07-29T18:55:21,582 adding 'gemmi-examples/rama_gather.py' 2021-07-29T18:55:21,583 adding 'gemmi-examples/rama_plot.py' 2021-07-29T18:55:21,584 adding 'gemmi-examples/simple_search.py' 2021-07-29T18:55:21,585 adding 'gemmi-examples/sub_ccd.py' 2021-07-29T18:55:21,587 adding 'gemmi-examples/weight.py' 2021-07-29T18:55:21,589 adding 'gemmi-0.4.6.dist-info/LICENSE.txt' 2021-07-29T18:55:21,590 adding 'gemmi-0.4.6.dist-info/METADATA' 2021-07-29T18:55:21,591 adding 'gemmi-0.4.6.dist-info/WHEEL' 2021-07-29T18:55:21,592 adding 'gemmi-0.4.6.dist-info/top_level.txt' 2021-07-29T18:55:21,593 adding 'gemmi-0.4.6.dist-info/RECORD' 2021-07-29T18:55:21,625 removing build/bdist.linux-armv7l/wheel 2021-07-29T18:55:21,728 Building wheel for gemmi (setup.py): finished with status 'done' 2021-07-29T18:55:21,758 Created wheel for gemmi: filename=gemmi-0.4.6-cp39-cp39-linux_armv7l.whl size=2221042 sha256=7d46a4fdcea047d9b8637a04813935beb5e5da741bceb0a1d690a7839080a40a 2021-07-29T18:55:21,759 Stored in directory: /tmp/pip-ephem-wheel-cache-fbu1ds39/wheels/f1/b4/38/6fa08aa935e3c40188abcb62a8becbfbc90ee985bee0f3142f 2021-07-29T18:55:21,770 Successfully built gemmi 2021-07-29T18:55:21,844 Removed build tracker: '/tmp/pip-req-tracker-g5854jfr'