2021-07-29T20:06:38,967 Created temporary directory: /tmp/pip-ephem-wheel-cache-4hc6ow08 2021-07-29T20:06:38,970 Created temporary directory: /tmp/pip-req-tracker-9nk19x6z 2021-07-29T20:06:38,971 Initialized build tracking at /tmp/pip-req-tracker-9nk19x6z 2021-07-29T20:06:38,971 Created build tracker: /tmp/pip-req-tracker-9nk19x6z 2021-07-29T20:06:38,971 Entered build tracker: /tmp/pip-req-tracker-9nk19x6z 2021-07-29T20:06:38,972 Created temporary directory: /tmp/pip-wheel-px9qp3x2 2021-07-29T20:06:39,003 WARNING: The index url "/" seems invalid, please provide a scheme. 2021-07-29T20:06:39,004 WARNING: The index url "t" seems invalid, please provide a scheme. 2021-07-29T20:06:39,004 WARNING: The index url "m" seems invalid, please provide a scheme. 2021-07-29T20:06:39,004 WARNING: The index url "p" seems invalid, please provide a scheme. 2021-07-29T20:06:39,005 Looking in indexes: https://pypi.org/simple, /, t, m, p 2021-07-29T20:06:39,008 WARNING: Location '/strawc/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T20:06:39,008 WARNING: Location 't/strawc/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T20:06:39,008 WARNING: Location 'm/strawc/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T20:06:39,008 WARNING: Location 'p/strawc/' is ignored: it is either a non-existing path or lacks a specific scheme. 2021-07-29T20:06:39,009 1 location(s) to search for versions of strawc: 2021-07-29T20:06:39,009 * https://pypi.org/simple/strawc/ 2021-07-29T20:06:39,009 Fetching project page and analyzing links: https://pypi.org/simple/strawc/ 2021-07-29T20:06:39,010 Getting page https://pypi.org/simple/strawc/ 2021-07-29T20:06:39,011 Found index url https://pypi.org/simple 2021-07-29T20:06:39,206 Found link https://files.pythonhosted.org/packages/14/cd/7e4dbd8964e197806357e1af9cb23374c4b332cfdcc5f5fed56cd6e12f98/strawC-0.0.2.1.tar.gz#sha256=26d798c98bb8a08011e4c233816f6c76c66605ca09ce068d8f1952532cf22ffc (from https://pypi.org/simple/strawc/) (requires-python:>3.3), version: 0.0.2.1 2021-07-29T20:06:39,207 Skipping link: not a file: https://pypi.org/simple/strawc/ 2021-07-29T20:06:39,224 Given no hashes to check 1 links for project 'strawc': discarding no candidates 2021-07-29T20:06:39,242 Collecting strawc==0.0.2.1 2021-07-29T20:06:39,244 Created temporary directory: /tmp/pip-unpack-ikbephby 2021-07-29T20:06:39,423 Downloading strawC-0.0.2.1.tar.gz (12 kB) 2021-07-29T20:06:39,476 Added strawc==0.0.2.1 from https://files.pythonhosted.org/packages/14/cd/7e4dbd8964e197806357e1af9cb23374c4b332cfdcc5f5fed56cd6e12f98/strawC-0.0.2.1.tar.gz#sha256=26d798c98bb8a08011e4c233816f6c76c66605ca09ce068d8f1952532cf22ffc to build tracker '/tmp/pip-req-tracker-9nk19x6z' 2021-07-29T20:06:39,477 Running setup.py (path:/tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58/setup.py) egg_info for package strawc 2021-07-29T20:06:39,477 Created temporary directory: /tmp/pip-pip-egg-info-1bxfb9z8 2021-07-29T20:06:39,478 Running command python setup.py egg_info 2021-07-29T20:06:42,484 running egg_info 2021-07-29T20:06:42,487 creating /tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info 2021-07-29T20:06:42,487 writing /tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/PKG-INFO 2021-07-29T20:06:42,490 writing dependency_links to /tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/dependency_links.txt 2021-07-29T20:06:42,492 writing requirements to /tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/requires.txt 2021-07-29T20:06:42,493 writing top-level names to /tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/top_level.txt 2021-07-29T20:06:42,495 writing manifest file '/tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/SOURCES.txt' 2021-07-29T20:06:42,503 reading manifest file '/tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/SOURCES.txt' 2021-07-29T20:06:42,505 reading manifest template 'MANIFEST.in' 2021-07-29T20:06:42,507 adding license file 'LICENSE' 2021-07-29T20:06:42,509 writing manifest file '/tmp/pip-pip-egg-info-1bxfb9z8/strawC.egg-info/SOURCES.txt' 2021-07-29T20:06:42,587 Source in /tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58 has version 0.0.2.1, which satisfies requirement strawc==0.0.2.1 from https://files.pythonhosted.org/packages/14/cd/7e4dbd8964e197806357e1af9cb23374c4b332cfdcc5f5fed56cd6e12f98/strawC-0.0.2.1.tar.gz#sha256=26d798c98bb8a08011e4c233816f6c76c66605ca09ce068d8f1952532cf22ffc 2021-07-29T20:06:42,588 Removed strawc==0.0.2.1 from https://files.pythonhosted.org/packages/14/cd/7e4dbd8964e197806357e1af9cb23374c4b332cfdcc5f5fed56cd6e12f98/strawC-0.0.2.1.tar.gz#sha256=26d798c98bb8a08011e4c233816f6c76c66605ca09ce068d8f1952532cf22ffc from build tracker '/tmp/pip-req-tracker-9nk19x6z' 2021-07-29T20:06:42,594 Created temporary directory: /tmp/pip-unpack-l1n6wada 2021-07-29T20:06:42,594 Building wheels for collected packages: strawc 2021-07-29T20:06:42,599 Created temporary directory: /tmp/pip-wheel-tby9_fa2 2021-07-29T20:06:42,599 Building wheel for strawc (setup.py): started 2021-07-29T20:06:42,600 Destination directory: /tmp/pip-wheel-tby9_fa2 2021-07-29T20:06:42,600 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tby9_fa2 2021-07-29T20:06:43,793 running bdist_wheel 2021-07-29T20:06:43,797 running build 2021-07-29T20:06:43,798 running build_ext 2021-07-29T20:06:43,806 creating tmp 2021-07-29T20:06:43,806 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpajkqfgfx.cpp -o tmp/tmpajkqfgfx.o -std=c++14 2021-07-29T20:06:43,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpt65tr5n7.cpp -o tmp/tmpt65tr5n7.o -fvisibility=hidden 2021-07-29T20:06:43,984 building 'strawC' extension 2021-07-29T20:06:43,996 creating build 2021-07-29T20:06:43,997 creating build/temp.linux-armv7l-3.9 2021-07-29T20:06:43,998 creating build/temp.linux-armv7l-3.9/src 2021-07-29T20:06:43,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58/.eggs/pybind11-2.7.0-py3.9.egg/pybind11/include -I/tmp/pip-wheel-px9qp3x2/strawc_423cdf4d99ad4cb3b0c957e64f35ff58/.eggs/pybind11-2.7.0-py3.9.egg/pybind11/include -I/usr/include/python3.9 -c src/straw.cpp -o build/temp.linux-armv7l-3.9/src/straw.o -DVERSION_INFO="0.0.2.1" -std=c++14 -fvisibility=hidden 2021-07-29T20:06:47,977 src/straw.cpp: In function ‘size_t hdf(char*, size_t, size_t, void*)’: 2021-07-29T20:06:47,977 src/straw.cpp:75:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-29T20:06:47,977 75 | if (found != string::npos) { 2021-07-29T20:06:47,977 | ~~~~~~^~~~~~~~~~~~~~~ 2021-07-29T20:06:47,978 src/straw.cpp:78:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2021-07-29T20:06:47,978 78 | if (found2 != string::npos) { 2021-07-29T20:06:47,978 | ~~~~~~~^~~~~~~~~~~~~~~ 2021-07-29T20:06:48,016 src/straw.cpp: In function ‘std::map, chromosome> readHeader(std::istream&, long int&)’: 2021-07-29T20:06:48,016 src/straw.cpp:204:14: warning: unused variable ‘nviPosition’ [-Wunused-variable] 2021-07-29T20:06:48,016 204 | long nviPosition = readLongFromFile(fin); 2021-07-29T20:06:48,016 | ^~~~~~~~~~~ 2021-07-29T20:06:48,016 src/straw.cpp:205:14: warning: unused variable ‘nviLength’ [-Wunused-variable] 2021-07-29T20:06:48,017 205 | long nviLength = readLongFromFile(fin); 2021-07-29T20:06:48,017 | ^~~~~~~~~ 2021-07-29T20:06:48,019 src/straw.cpp: In function ‘bool readFooter(std::istream&, long int, int, int, std::string, std::string, int, long int&, indexEntry&, indexEntry&)’: 2021-07-29T20:06:48,019 src/straw.cpp:243:14: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-07-29T20:06:48,019 243 | long nBytes = readLongFromFile(fin); 2021-07-29T20:06:48,019 | ^~~~~~ 2021-07-29T20:06:48,020 src/straw.cpp:245:13: warning: unused variable ‘nBytes’ [-Wunused-variable] 2021-07-29T20:06:48,020 245 | int nBytes = readIntFromFile(fin); 2021-07-29T20:06:48,020 | ^~~~~~ 2021-07-29T20:06:48,022 src/straw.cpp:258:13: warning: unused variable ‘sizeinbytes’ [-Wunused-variable] 2021-07-29T20:06:48,023 258 | int sizeinbytes = readIntFromFile(fin); 2021-07-29T20:06:48,023 | ^~~~~~~~~~~ 2021-07-29T20:06:48,025 src/straw.cpp:298:17: warning: unused variable ‘chrIdx’ [-Wunused-variable] 2021-07-29T20:06:48,025 298 | int chrIdx = readIntFromFile(fin); 2021-07-29T20:06:48,025 | ^~~~~~ 2021-07-29T20:06:48,026 src/straw.cpp:277:13: warning: unused variable ‘binSize’ [-Wunused-variable] 2021-07-29T20:06:48,026 277 | int binSize = readIntFromFile(fin); 2021-07-29T20:06:48,026 | ^~~~~~~ 2021-07-29T20:06:48,026 src/straw.cpp:333:17: warning: unused variable ‘chrIdx’ [-Wunused-variable] 2021-07-29T20:06:48,027 333 | int chrIdx = readIntFromFile(fin); 2021-07-29T20:06:48,027 | ^~~~~~ 2021-07-29T20:06:48,027 src/straw.cpp:312:13: warning: unused variable ‘binSize’ [-Wunused-variable] 2021-07-29T20:06:48,027 312 | int binSize = readIntFromFile(fin); 2021-07-29T20:06:48,027 | ^~~~~~~ 2021-07-29T20:06:48,070 src/straw.cpp: In function ‘std::map readMatrixHttp(CURL*, long int, std::string, int, int&, int&)’: 2021-07-29T20:06:48,070 src/straw.cpp:484:9: warning: unused variable ‘c1’ [-Wunused-variable] 2021-07-29T20:06:48,070 484 | int c1 = readIntFromFile(bufin); 2021-07-29T20:06:48,070 | ^~ 2021-07-29T20:06:48,071 src/straw.cpp:485:9: warning: unused variable ‘c2’ [-Wunused-variable] 2021-07-29T20:06:48,071 485 | int c2 = readIntFromFile(bufin); 2021-07-29T20:06:48,071 | ^~ 2021-07-29T20:06:48,072 src/straw.cpp: In function ‘std::map readMatrix(std::istream&, long int, std::string, int, int&, int&)’: 2021-07-29T20:06:48,072 src/straw.cpp:511:9: warning: unused variable ‘c1’ [-Wunused-variable] 2021-07-29T20:06:48,072 511 | int c1 = readIntFromFile(fin); 2021-07-29T20:06:48,072 | ^~ 2021-07-29T20:06:48,073 src/straw.cpp:512:9: warning: unused variable ‘c2’ [-Wunused-variable] 2021-07-29T20:06:48,073 512 | int c2 = readIntFromFile(fin); 2021-07-29T20:06:48,073 | ^~ 2021-07-29T20:07:00,609 src/straw.cpp: In function ‘std::vector straw(std::string, std::string, std::string, std::string, std::string, int)’: 2021-07-29T20:07:00,609 src/straw.cpp:975:30: warning: ‘curl’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-29T20:07:00,609 975 | buffer4 = getData(curl, c2NormEntry.position, c2NormEntry.size); 2021-07-29T20:07:00,609 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T20:07:01,611 src/straw.cpp: In function ‘int getSize(std::string, std::string, std::string, std::string, std::string, int)’: 2021-07-29T20:07:01,611 src/straw.cpp:1173:30: warning: ‘curl’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-29T20:07:01,611 1173 | buffer4 = getData(curl, c2NormEntry.position, c2NormEntry.size); 2021-07-29T20:07:01,611 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-29T20:07:14,613 creating build/lib.linux-armv7l-3.9 2021-07-29T20:07:14,614 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/straw.o -o build/lib.linux-armv7l-3.9/strawC.cpython-39-arm-linux-gnueabihf.so -lcurl -lz 2021-07-29T20:07:15,162 installing to build/bdist.linux-armv7l/wheel 2021-07-29T20:07:15,162 running install 2021-07-29T20:07:15,163 running install_lib 2021-07-29T20:07:15,167 creating build/bdist.linux-armv7l 2021-07-29T20:07:15,167 creating build/bdist.linux-armv7l/wheel 2021-07-29T20:07:15,169 copying build/lib.linux-armv7l-3.9/strawC.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-29T20:07:15,243 running install_egg_info 2021-07-29T20:07:15,254 running egg_info 2021-07-29T20:07:15,255 writing strawC.egg-info/PKG-INFO 2021-07-29T20:07:15,257 writing dependency_links to strawC.egg-info/dependency_links.txt 2021-07-29T20:07:15,259 writing requirements to strawC.egg-info/requires.txt 2021-07-29T20:07:15,260 writing top-level names to strawC.egg-info/top_level.txt 2021-07-29T20:07:15,264 reading manifest file 'strawC.egg-info/SOURCES.txt' 2021-07-29T20:07:15,267 reading manifest template 'MANIFEST.in' 2021-07-29T20:07:15,268 adding license file 'LICENSE' 2021-07-29T20:07:15,271 writing manifest file 'strawC.egg-info/SOURCES.txt' 2021-07-29T20:07:15,272 Copying strawC.egg-info to build/bdist.linux-armv7l/wheel/strawC-0.0.2.1-py3.9.egg-info 2021-07-29T20:07:15,287 running install_scripts 2021-07-29T20:07:15,371 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-29T20:07:15,376 creating build/bdist.linux-armv7l/wheel/strawC-0.0.2.1.dist-info/WHEEL 2021-07-29T20:07:15,379 creating '/tmp/pip-wheel-tby9_fa2/strawC-0.0.2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-29T20:07:15,914 adding 'strawC.cpython-39-arm-linux-gnueabihf.so' 2021-07-29T20:07:15,945 adding 'strawC-0.0.2.1.dist-info/LICENSE' 2021-07-29T20:07:15,946 adding 'strawC-0.0.2.1.dist-info/METADATA' 2021-07-29T20:07:15,947 adding 'strawC-0.0.2.1.dist-info/WHEEL' 2021-07-29T20:07:15,948 adding 'strawC-0.0.2.1.dist-info/top_level.txt' 2021-07-29T20:07:15,949 adding 'strawC-0.0.2.1.dist-info/RECORD' 2021-07-29T20:07:15,967 removing build/bdist.linux-armv7l/wheel 2021-07-29T20:07:16,055 Building wheel for strawc (setup.py): finished with status 'done' 2021-07-29T20:07:16,073 Created wheel for strawc: filename=strawC-0.0.2.1-cp39-cp39-linux_armv7l.whl size=1075934 sha256=a7b989f38a536293f85601925ff363f61c85819948bfb86ecb2ea2b8c84afd95 2021-07-29T20:07:16,074 Stored in directory: /tmp/pip-ephem-wheel-cache-4hc6ow08/wheels/99/5a/95/76b0f57c91b6fa206cc39d8ad37e0de53313701b15529ef671 2021-07-29T20:07:16,085 Successfully built strawc 2021-07-29T20:07:16,127 Removed build tracker: '/tmp/pip-req-tracker-9nk19x6z'